AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968960 MtrunA17_Chr3g0109101 92.881 295 20 1 1 294 1 295 0.0 541
Msa0968960 MtrunA17_Chr3g0109111 88.820 322 35 1 7 327 79 400 0.0 527
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968960 AT3G02690.1 72.555 317 83 2 7 322 99 412 1.68e-154 439

Find 98 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCGATGCTGCTTGCTTTC+AGG 0.034711 6_4:-359525 Msa0968960:CDS
TATAGATTATGACTTGTTTA+TGG 0.122808 6_4:-356691 Msa0968960:three_prime_UTR
TAATATCGCCGTTCTTCTTC+TGG 0.156426 6_4:-359718 Msa0968960:CDS
ATACTTGCGGCTTTGCTATT+TGG 0.192263 6_4:-358795 Msa0968960:CDS
ATTGGGAATGCTAGTGCTTT+TGG 0.223059 6_4:-356958 Msa0968960:three_prime_UTR
AAATTGTCATGAACTCAAAT+TGG 0.247469 6_4:-356976 Msa0968960:three_prime_UTR
CAACGATAGTTGAAGGGTTA+TGG 0.279629 6_4:-359754 Msa0968960:CDS
GTCGATGCTGCTTGCTTTCA+GGG 0.294962 6_4:-359524 Msa0968960:CDS
AGCATCGACGAGAGCAAATA+TGG 0.297028 6_4:+359538 None:intergenic
TTCCTTCTGGCTTCCATGCT+TGG 0.297169 6_4:-359571 Msa0968960:CDS
TATTTCAGGTTTCTGTATCT+TGG 0.302197 6_4:-357143 Msa0968960:intron
AGAGGAAGGGCGTTTCCTTC+TGG 0.304509 6_4:-359584 Msa0968960:CDS
AGAGAAAACTTCAGCTGGTT+TGG 0.310039 6_4:-359483 Msa0968960:CDS
ATGGGAGCAACTTCTCACTA+TGG 0.345755 6_4:-358409 Msa0968960:CDS
CATCTTCTTCTGCACTTAAG+AGG 0.346078 6_4:+359807 None:intergenic
AATATCGCCGTTCTTCTTCT+GGG 0.346517 6_4:-359717 Msa0968960:CDS
GGCGAGTCCATTGGAATTGT+TGG 0.358289 6_4:-358774 Msa0968960:CDS
AGTTGCTCCCATCAATTGAT+AGG 0.369335 6_4:+358420 None:intergenic
GAGAAAACTTCAGCTGGTTT+GGG 0.385919 6_4:-359482 Msa0968960:CDS
CTTCTTCTGGGGCACTTCCA+TGG 0.396917 6_4:-359705 Msa0968960:CDS
GGGCTTGTACTTGGTGTCAT+AGG 0.398978 6_4:-358744 Msa0968960:CDS
TTACAGTTCAACTGATGTAT+TGG 0.404065 6_4:-357979 Msa0968960:CDS
CGAAAATTGAGGCAAACATT+GGG 0.404211 6_4:+357518 None:intergenic
TATTGCAGCTACAGTAATAC+TGG 0.409163 6_4:+357088 None:intergenic
AACGATAGTTGAAGGGTTAT+GGG 0.412873 6_4:-359753 Msa0968960:CDS
GGAGCTGCCGGGCTTGTACT+TGG 0.418936 6_4:-358753 Msa0968960:CDS
ATTGGAATTGTTGGAGCTGC+CGG 0.419713 6_4:-358765 Msa0968960:CDS
TTGCTATTTGGCGAGTCCAT+TGG 0.426917 6_4:-358783 Msa0968960:CDS
AACAACGACCCTGCTGTAAG+TGG 0.430978 6_4:-358014 Msa0968960:CDS
TGGCTTATCCATGCTTTATG+TGG 0.436416 6_4:+359841 None:intergenic
CCGAAAATTGAGGCAAACAT+TGG 0.438271 6_4:+357517 None:intergenic
ACCCATCCAGTTGCCATGAT+AGG 0.438828 6_4:+358299 None:intergenic
AATTGTCATGAACTCAAATT+GGG 0.445021 6_4:-356975 Msa0968960:three_prime_UTR
TTACCTTCCCTATCAATTGA+TGG 0.445495 6_4:-358428 Msa0968960:CDS
TCTGATCCTATCATGGCAAC+TGG 0.460438 6_4:-358305 Msa0968960:CDS
TTGCAGCATATGGTTATTGG+TGG 0.460764 6_4:-358065 Msa0968960:intron
CATGATAGGATCAGAGTACT+TGG 0.465171 6_4:+358313 None:intergenic
AACAATCTGTACAGGTGAAA+AGG 0.470799 6_4:+357115 None:intergenic
TCGTTTCGTCTCATTCCTGC+CGG 0.471862 6_4:-359635 Msa0968960:CDS
TTGGAATTGTTGGAGCTGCC+GGG 0.484733 6_4:-358764 Msa0968960:CDS
AACTTCTCACTATGGGGAAG+TGG 0.486637 6_4:-358401 Msa0968960:CDS
TTTGGAAGCGCTGTTAGCTA+TGG 0.497044 6_4:-357936 Msa0968960:CDS
TCATTGCCAACGATAGTTGA+AGG 0.500413 6_4:-359761 Msa0968960:CDS
CGTTTCGTCTCATTCCTGCC+GGG 0.504091 6_4:-359634 Msa0968960:CDS
CAAGTACTCTGATCCTATCA+TGG 0.508310 6_4:-358312 Msa0968960:CDS
TTAAGACTCCCACTTACAGC+AGG 0.509878 6_4:+358005 None:intergenic
GGGTTAGAGAAAACTTCAGC+TGG 0.512891 6_4:-359488 Msa0968960:CDS
TATGGGGAAGTGGGGAGATG+TGG 0.515222 6_4:-358391 Msa0968960:CDS
TGGGAGCAACTTCTCACTAT+GGG 0.515852 6_4:-358408 Msa0968960:CDS
TACCTTCCCTATCAATTGAT+GGG 0.518568 6_4:-358427 Msa0968960:CDS
ATCCTATCATGGCAACTGGA+TGG 0.520007 6_4:-358301 Msa0968960:CDS
AAATGTAAGTGAACTGAGCT+TGG 0.524209 6_4:+357546 None:intergenic
TCCTATCATGGCAACTGGAT+GGG 0.527496 6_4:-358300 Msa0968960:intron
TTGGCACTGTCATGGTTCGG+TGG 0.529695 6_4:-358340 Msa0968960:CDS
TGGCACTGTCATGGTTCGGT+GGG 0.533959 6_4:-358339 Msa0968960:CDS
AAAAGCAACAAGAAGGAACC+CGG 0.541215 6_4:+359616 None:intergenic
ACTTCTCACTATGGGGAAGT+GGG 0.542735 6_4:-358400 Msa0968960:CDS
CTGGCTCCAACAATCTGTAC+AGG 0.544488 6_4:+357107 None:intergenic
ATATCGCCGTTCTTCTTCTG+GGG 0.550209 6_4:-359716 Msa0968960:CDS
GCTTCTTGCAGCTCAGAGCA+TGG 0.554655 6_4:-358366 Msa0968960:CDS
TTTGACAGTGGCTATACTTG+CGG 0.561743 6_4:-358808 Msa0968960:CDS
CTCTTAAGTGCAGAAGAAGA+TGG 0.563214 6_4:-359806 Msa0968960:CDS
GGTTAACTTTAGAAACACTT+CGG 0.564771 6_4:-357060 Msa0968960:CDS
TACTGTAGCTGCAATATACA+TGG 0.565537 6_4:-357081 Msa0968960:CDS
CAGTTGGCACTGTCATGGTT+CGG 0.567605 6_4:-358343 Msa0968960:CDS
GTTGCTCCCATCAATTGATA+GGG 0.571292 6_4:+358421 None:intergenic
CATAACCCTTCAACTATCGT+TGG 0.574957 6_4:+359755 None:intergenic
GGCAGCTCCAACAATTCCAA+TGG 0.578419 6_4:+358767 None:intergenic
GATGACTTTACTGCTACGCT+AGG 0.578531 6_4:-356728 Msa0968960:three_prime_UTR
GCAAGTATAGCCACTGTCAA+AGG 0.578902 6_4:+358810 None:intergenic
CTCATGAACCACATAAAGCA+TGG 0.581441 6_4:-359849 None:intergenic
CATGGCAGTTGGCACTGTCA+TGG 0.583057 6_4:-358348 Msa0968960:CDS
GCAACAAGAAGGAACCCGGC+AGG 0.583290 6_4:+359620 None:intergenic
CATTGCCAACGATAGTTGAA+GGG 0.584619 6_4:-359760 Msa0968960:CDS
GACGAGAGCAAATATGGCGA+TGG 0.586449 6_4:+359544 None:intergenic
GCAGCTCAGAGCATGGCAGT+TGG 0.587376 6_4:-358359 Msa0968960:CDS
AACCAGCAAAAGCAACAAGA+AGG 0.591823 6_4:+359609 None:intergenic
TGATTCACAACCTTTGACAG+TGG 0.592362 6_4:-358820 Msa0968960:CDS
TATGACACCAAGTACAAGCC+CGG 0.598392 6_4:+358746 None:intergenic
CTCCCATCAATTGATAGGGA+AGG 0.603069 6_4:+358425 None:intergenic
CACTTCTTTCATCGCCACCA+TGG 0.610773 6_4:+359688 None:intergenic
AGCCAAGCATGGAAGCCAGA+AGG 0.612271 6_4:+359569 None:intergenic
TGGCGATGGAGAGCCAAGCA+TGG 0.615881 6_4:+359558 None:intergenic
TAAGAATCGCTAATGCCACA+AGG 0.616917 6_4:+358036 None:intergenic
GAAGTGCCCCAGAAGAAGAA+CGG 0.628202 6_4:+359710 None:intergenic
CTTCTGGGGCACTTCCATGG+TGG 0.634864 6_4:-359702 Msa0968960:CDS
AAGAATCGCTAATGCCACAA+GGG 0.636088 6_4:+358037 None:intergenic
GCAGTCTTACCCGAAAATTG+AGG 0.636414 6_4:+357507 None:intergenic
GAAAATTGAGGCAAACATTG+GGG 0.640798 6_4:+357519 None:intergenic
ATAGTTGAAGGGTTATGGGA+AGG 0.643808 6_4:-359749 Msa0968960:CDS
ACAACGACCCTGCTGTAAGT+GGG 0.654735 6_4:-358013 Msa0968960:CDS
AGAATCGCTAATGCCACAAG+GGG 0.656521 6_4:+358038 None:intergenic
TAAGACTCCCACTTACAGCA+GGG 0.658809 6_4:+358006 None:intergenic
CATAGGACTTGTGTTACTCG+AGG 0.662221 6_4:-358727 Msa0968960:intron
CTTCTCACTATGGGGAAGTG+GGG 0.663161 6_4:-358399 Msa0968960:CDS
AAAGAAGTGATTCCGAAATG+CGG 0.663568 6_4:-359674 Msa0968960:CDS
GGGAGCAACTTCTCACTATG+GGG 0.688783 6_4:-358407 Msa0968960:CDS
GAATCGCTAATGCCACAAGG+GGG 0.752839 6_4:+358039 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATTCTATTATTATTGTT+TGG - chr6_4:357099-357118 Msa0968960:CDS 15.0%
!! CTATTCTATTATTATTGTTT+GGG - chr6_4:357100-357119 Msa0968960:CDS 15.0%
!!! ACTTTTCTTTTTCTTTTAAA+CGG - chr6_4:357362-357381 Msa0968960:intron 15.0%
!! TAATATGACATATTCATTAT+GGG + chr6_4:358884-358903 None:intergenic 15.0%
!! CTAATACAATAAAATTTCTA+TGG + chr6_4:359743-359762 None:intergenic 15.0%
!! GTAGTAATAATGACTATATT+CGG - chr6_4:357286-357305 Msa0968960:intron 20.0%
!!! CTTTTCTTTTTCTTTTAAAC+GGG - chr6_4:357363-357382 Msa0968960:intron 20.0%
!!! ATTTTATAGAGTAATTTCAC+GGG + chr6_4:357524-357543 None:intergenic 20.0%
!!! CATTTTATAGAGTAATTTCA+CGG + chr6_4:357525-357544 None:intergenic 20.0%
!! TTTGATTAAGTTTAACCTAA+AGG - chr6_4:357795-357814 Msa0968960:intron 20.0%
!! AAAAGGATTATGCATATAAT+TGG - chr6_4:357867-357886 Msa0968960:intron 20.0%
!! ATATAATTGGAAGGATATTA+AGG - chr6_4:357880-357899 Msa0968960:intron 20.0%
!! TCAAAATTACAAAATCAACT+CGG + chr6_4:357962-357981 None:intergenic 20.0%
!!! TAGTATATAATAGAAGGTAT+TGG + chr6_4:358009-358028 None:intergenic 20.0%
!! ACTGAATAGTATATAATAGA+AGG + chr6_4:358015-358034 None:intergenic 20.0%
!! TAGTGAAATGATGATTATAT+GGG - chr6_4:358265-358284 Msa0968960:intron 20.0%
!! CTAATCGTTTAAAAAAAAAG+AGG - chr6_4:358325-358344 Msa0968960:CDS 20.0%
!! GTTTAAAAAAAAAGAGGAAA+GGG - chr6_4:358331-358350 Msa0968960:CDS 20.0%
!! AAATCTTCAAGTGTATAAAA+TGG + chr6_4:358826-358845 None:intergenic 20.0%
!! CTAATATGACATATTCATTA+TGG + chr6_4:358885-358904 None:intergenic 20.0%
!! CAATAAAATTATTATGTCAC+TGG + chr6_4:359188-359207 None:intergenic 20.0%
!!! CATTTTTATGTTTCTTTTTC+AGG - chr6_4:359296-359315 Msa0968960:intron 20.0%
!!! TTTTGATTAGTTGTTATATC+AGG - chr6_4:359624-359643 Msa0968960:CDS 20.0%
!!! AAACAATTTTCTCTTGTATA+AGG + chr6_4:359720-359739 None:intergenic 20.0%
!!! TATAGATTATGACTTGTTTA+TGG - chr6_4:359799-359818 Msa0968960:CDS 20.0%
! CTTATTTGAGGATATATACA+AGG + chr6_4:357139-357158 None:intergenic 25.0%
! ATATCCTCAAATAAGACTAT+AGG - chr6_4:357144-357163 Msa0968960:intron 25.0%
!!! ATTGATATTGCTGTTTTGTT+TGG - chr6_4:357411-357430 Msa0968960:intron 25.0%
!!! TTGATATTGCTGTTTTGTTT+GGG - chr6_4:357412-357431 Msa0968960:intron 25.0%
! AAAAGTTGCTGAGTTAAATT+TGG - chr6_4:357582-357601 Msa0968960:intron 25.0%
! AGGATATTAAGGATATGTTT+CGG - chr6_4:357891-357910 Msa0968960:intron 25.0%
!!! TATAATAGAAGGTATTGGTT+AGG + chr6_4:358004-358023 None:intergenic 25.0%
! GTAGTGAAATGATGATTATA+TGG - chr6_4:358264-358283 Msa0968960:intron 25.0%
! CGTTTAAAAAAAAAGAGGAA+AGG - chr6_4:358330-358349 Msa0968960:CDS 25.0%
! TTAAGAACTTTGTAGAAGTT+TGG - chr6_4:358376-358395 Msa0968960:CDS 25.0%
!! TCAATATACTGATTACAATG+TGG + chr6_4:358792-358811 None:intergenic 25.0%
!! CGAAAAAGTTATGATTTTGA+AGG + chr6_4:359221-359240 None:intergenic 25.0%
!!! AAAACATGTTAATTTGCTAG+TGG + chr6_4:359265-359284 None:intergenic 25.0%
!!! ACCTTTGTATACACATTTTT+TGG - chr6_4:359319-359338 Msa0968960:intron 25.0%
! ACCAAAAAATGTGTATACAA+AGG + chr6_4:359323-359342 None:intergenic 25.0%
!!! TGTATACACATTTTTTGGTT+TGG - chr6_4:359324-359343 Msa0968960:intron 25.0%
!!! ATTTTTTGGTTTGGTATTTC+AGG - chr6_4:359333-359352 Msa0968960:intron 25.0%
!!! TTCATGACAATTTTTTCGTT+GGG + chr6_4:359507-359526 None:intergenic 25.0%
! AAATTGTCATGAACTCAAAT+TGG - chr6_4:359514-359533 Msa0968960:CDS 25.0%
! AATTGTCATGAACTCAAATT+GGG - chr6_4:359515-359534 Msa0968960:CDS 25.0%
! TTTCTCTTGTATAAGGATTA+AGG + chr6_4:359713-359732 None:intergenic 25.0%
CGAAACGAAGAAACAAAAAA+AGG + chr6_4:356843-356862 None:intergenic 30.0%
!! TTCACCTATAGTCTTATTTG+AGG + chr6_4:357151-357170 None:intergenic 30.0%
CATACAATGTGCATTAGATA+AGG + chr6_4:357482-357501 None:intergenic 30.0%
CTTATCTAATGCACATTGTA+TGG - chr6_4:357480-357499 Msa0968960:intron 30.0%
GGATTATGCATATAATTGGA+AGG - chr6_4:357871-357890 Msa0968960:intron 30.0%
TTGAGATGTACAATTTCTCT+TGG - chr6_4:357978-357997 Msa0968960:CDS 30.0%
TTACAGTTCAACTGATGTAT+TGG - chr6_4:358511-358530 Msa0968960:intron 30.0%
! TTCTTTTACAGTGCAACTAA+AGG - chr6_4:358581-358600 Msa0968960:intron 30.0%
ATGAATGAAAATTCACTGCA+AGG + chr6_4:358642-358661 None:intergenic 30.0%
! ACTAAAGTAAGCTCAGTTTT+AGG - chr6_4:358666-358685 Msa0968960:intron 30.0%
GATTTAAACTACGTTCTTTG+AGG + chr6_4:358707-358726 None:intergenic 30.0%
! TATACTGATTACAATGTGGA+AGG + chr6_4:358788-358807 None:intergenic 30.0%
! ATATTCATTATGGGCTGATA+TGG + chr6_4:358875-358894 None:intergenic 30.0%
!!! TTGTTTTTGTGATGTATTGC+AGG - chr6_4:358913-358932 Msa0968960:intron 30.0%
CTTTAATTGTGAAGTCATTC+AGG - chr6_4:359112-359131 Msa0968960:intron 30.0%
!! TTTTTCGTAGCTTTTTTCAC+TGG - chr6_4:359234-359253 Msa0968960:intron 30.0%
!! TATTTCAGGTTTCTGTATCT+TGG - chr6_4:359347-359366 Msa0968960:intron 30.0%
! GGTTAACTTTAGAAACACTT+CGG - chr6_4:359430-359449 Msa0968960:intron 30.0%
!!! GTTCATGACAATTTTTTCGT+TGG + chr6_4:359508-359527 None:intergenic 30.0%
AACGATAGTTGAAGGGTTAT+GGG - chr6_4:356737-356756 Msa0968960:three_prime_UTR 35.0%
AAAGAAGTGATTCCGAAATG+CGG - chr6_4:356816-356835 Msa0968960:intron 35.0%
ACAAAAAAAGGACCGCATTT+CGG + chr6_4:356831-356850 None:intergenic 35.0%
GTGTGTCATATTGATAGAAC+TGG - chr6_4:357551-357570 Msa0968960:CDS 35.0%
! TATTGATAGAACTGGACTAG+AGG - chr6_4:357559-357578 Msa0968960:intron 35.0%
GACTATCTAGTGTGGATATA+TGG - chr6_4:357636-357655 Msa0968960:intron 35.0%
AGAACTAAGTCACTTCCTTT+AGG + chr6_4:357813-357832 None:intergenic 35.0%
!! AACTTTGGGTTGTGCATAAA+GGG + chr6_4:357840-357859 None:intergenic 35.0%
!! TAACTTTGGGTTGTGCATAA+AGG + chr6_4:357841-357860 None:intergenic 35.0%
!! TCCTTTTGACTGCTAACTTT+GGG + chr6_4:357854-357873 None:intergenic 35.0%
!! ATCCTTTTGACTGCTAACTT+TGG + chr6_4:357855-357874 None:intergenic 35.0%
TTACCTTCCCTATCAATTGA+TGG - chr6_4:358062-358081 Msa0968960:CDS 35.0%
TACCTTCCCTATCAATTGAT+GGG - chr6_4:358063-358082 Msa0968960:intron 35.0%
CCATATGCTGCAAAAGAAAT+AGG + chr6_4:358418-358437 None:intergenic 35.0%
!! CCTATTTCTTTTGCAGCATA+TGG - chr6_4:358415-358434 Msa0968960:CDS 35.0%
! CTTTTGCAGCATATGGTTAT+TGG - chr6_4:358422-358441 Msa0968960:CDS 35.0%
TTCCAAAAATGGACATGTAG+AGG + chr6_4:358541-358560 None:intergenic 35.0%
AACGTAGTTTAAATCTCCAC+CGG - chr6_4:358712-358731 Msa0968960:intron 35.0%
! TGATACTTTTACAACCATCC+CGG + chr6_4:358734-358753 None:intergenic 35.0%
! TGAACCATTTTGGATCAAAG+TGG + chr6_4:358763-358782 None:intergenic 35.0%
AAATGTAAGTGAACTGAGCT+TGG + chr6_4:358947-358966 None:intergenic 35.0%
GAAAATTGAGGCAAACATTG+GGG + chr6_4:358974-358993 None:intergenic 35.0%
CGAAAATTGAGGCAAACATT+GGG + chr6_4:358975-358994 None:intergenic 35.0%
! CCAATGTTTGCCTCAATTTT+CGG - chr6_4:358973-358992 Msa0968960:intron 35.0%
! CAATGTTTGCCTCAATTTTC+GGG - chr6_4:358974-358993 Msa0968960:intron 35.0%
AACAATCTGTACAGGTGAAA+AGG + chr6_4:359378-359397 None:intergenic 35.0%
! TTTTCACCTGTACAGATTGT+TGG - chr6_4:359377-359396 Msa0968960:intron 35.0%
TATTGCAGCTACAGTAATAC+TGG + chr6_4:359405-359424 None:intergenic 35.0%
TACTGTAGCTGCAATATACA+TGG - chr6_4:359409-359428 Msa0968960:intron 35.0%
! TTACATAGTCAGTTTTCTGC+TGG - chr6_4:359467-359486 Msa0968960:intron 35.0%
TTAAGGATTGTGTTCTACTC+TGG + chr6_4:359696-359715 None:intergenic 35.0%
!!! CTTAAGAGGCACTCTTTTAC+TGG + chr6_4:356672-356691 None:intergenic 40.0%
CATCTTCTTCTGCACTTAAG+AGG + chr6_4:356686-356705 None:intergenic 40.0%
CTCTTAAGTGCAGAAGAAGA+TGG - chr6_4:356684-356703 Msa0968960:three_prime_UTR 40.0%
TCATTGCCAACGATAGTTGA+AGG - chr6_4:356729-356748 Msa0968960:three_prime_UTR 40.0%
CATTGCCAACGATAGTTGAA+GGG - chr6_4:356730-356749 Msa0968960:three_prime_UTR 40.0%
CATAACCCTTCAACTATCGT+TGG + chr6_4:356738-356757 None:intergenic 40.0%
CAACGATAGTTGAAGGGTTA+TGG - chr6_4:356736-356755 Msa0968960:three_prime_UTR 40.0%
ATAGTTGAAGGGTTATGGGA+AGG - chr6_4:356741-356760 Msa0968960:three_prime_UTR 40.0%
TAATATCGCCGTTCTTCTTC+TGG - chr6_4:356772-356791 Msa0968960:intron 40.0%
AATATCGCCGTTCTTCTTCT+GGG - chr6_4:356773-356792 Msa0968960:intron 40.0%
AAAAGCAACAAGAAGGAACC+CGG + chr6_4:356877-356896 None:intergenic 40.0%
!!! TTCCTTCTTGTTGCTTTTGC+TGG - chr6_4:356879-356898 Msa0968960:three_prime_UTR 40.0%
AACCAGCAAAAGCAACAAGA+AGG + chr6_4:356884-356903 None:intergenic 40.0%
!!! TTTTGCTGGTTCTAGAGGAA+GGG - chr6_4:356893-356912 Msa0968960:three_prime_UTR 40.0%
AGAGAAAACTTCAGCTGGTT+TGG - chr6_4:357007-357026 Msa0968960:three_prime_UTR 40.0%
! GAGAAAACTTCAGCTGGTTT+GGG - chr6_4:357008-357027 Msa0968960:three_prime_UTR 40.0%
CTTGCTTTGACTATCTAGTG+TGG - chr6_4:357628-357647 Msa0968960:intron 40.0%
ATCTAGTGTGGATATATGGC+AGG - chr6_4:357640-357659 Msa0968960:intron 40.0%
TGATTCACAACCTTTGACAG+TGG - chr6_4:357670-357689 Msa0968960:intron 40.0%
TTTGACAGTGGCTATACTTG+CGG - chr6_4:357682-357701 Msa0968960:intron 40.0%
!! ATACTTGCGGCTTTGCTATT+TGG - chr6_4:357695-357714 Msa0968960:intron 40.0%
ACCCAAAGTTAGCAGTCAAA+AGG - chr6_4:357850-357869 Msa0968960:intron 40.0%
TATTTCTTGGTTGTGCACAC+TGG + chr6_4:357934-357953 None:intergenic 40.0%
CAACTCGGCAATGTATTTCT+TGG + chr6_4:357947-357966 None:intergenic 40.0%
ATTCAGTAATGCAGCACTAC+TGG - chr6_4:358028-358047 Msa0968960:CDS 40.0%
GTTGCTCCCATCAATTGATA+GGG + chr6_4:358072-358091 None:intergenic 40.0%
AGTTGCTCCCATCAATTGAT+AGG + chr6_4:358073-358092 None:intergenic 40.0%
! CATGATAGGATCAGAGTACT+TGG + chr6_4:358180-358199 None:intergenic 40.0%
CAAGTACTCTGATCCTATCA+TGG - chr6_4:358178-358197 Msa0968960:intron 40.0%
TTGCAGCATATGGTTATTGG+TGG - chr6_4:358425-358444 Msa0968960:CDS 40.0%
AAGAATCGCTAATGCCACAA+GGG + chr6_4:358456-358475 None:intergenic 40.0%
TAAGAATCGCTAATGCCACA+AGG + chr6_4:358457-358476 None:intergenic 40.0%
! CTCCTCTACATGTCCATTTT+TGG - chr6_4:358536-358555 Msa0968960:intron 40.0%
!! CTACGTTCTTTGAGGTTACA+AGG + chr6_4:358699-358718 None:intergenic 40.0%
ACGTAGTTTAAATCTCCACC+GGG - chr6_4:358713-358732 Msa0968960:intron 40.0%
!! AGTGCCACTTTGATCCAAAA+TGG - chr6_4:358756-358775 Msa0968960:CDS 40.0%
CCGAAAATTGAGGCAAACAT+TGG + chr6_4:358976-358995 None:intergenic 40.0%
! ATTGGGAATGCTAGTGCTTT+TGG - chr6_4:359532-359551 Msa0968960:CDS 40.0%
! AATGCTAGTGCTTTTGGACA+GGG - chr6_4:359538-359557 Msa0968960:CDS 40.0%
ATATCGCCGTTCTTCTTCTG+GGG - chr6_4:356774-356793 Msa0968960:intron 45.0%
!!! GTTGCTTTTGCTGGTTCTAG+AGG - chr6_4:356888-356907 Msa0968960:three_prime_UTR 45.0%
!!! CTTTTGCTGGTTCTAGAGGA+AGG - chr6_4:356892-356911 Msa0968960:three_prime_UTR 45.0%
!! AGCATCGACGAGAGCAAATA+TGG + chr6_4:356955-356974 None:intergenic 45.0%
! TTTCAGGGTTTTCTCGCTGA+AGG - chr6_4:356981-357000 Msa0968960:three_prime_UTR 45.0%
! TTCAGGGTTTTCTCGCTGAA+GGG - chr6_4:356982-357001 Msa0968960:three_prime_UTR 45.0%
GGGTTAGAGAAAACTTCAGC+TGG - chr6_4:357002-357021 Msa0968960:three_prime_UTR 45.0%
GCAAGTATAGCCACTGTCAA+AGG + chr6_4:357683-357702 None:intergenic 45.0%
!! TTGCTATTTGGCGAGTCCAT+TGG - chr6_4:357707-357726 Msa0968960:intron 45.0%
ATTGGAATTGTTGGAGCTGC+CGG - chr6_4:357725-357744 Msa0968960:intron 45.0%
TATGACACCAAGTACAAGCC+CGG + chr6_4:357747-357766 None:intergenic 45.0%
! CATAGGACTTGTGTTACTCG+AGG - chr6_4:357763-357782 Msa0968960:intron 45.0%
CTCCCATCAATTGATAGGGA+AGG + chr6_4:358068-358087 None:intergenic 45.0%
ATGGGAGCAACTTCTCACTA+TGG - chr6_4:358081-358100 Msa0968960:intron 45.0%
TGGGAGCAACTTCTCACTAT+GGG - chr6_4:358082-358101 Msa0968960:intron 45.0%
AACTTCTCACTATGGGGAAG+TGG - chr6_4:358089-358108 Msa0968960:intron 45.0%
ACTTCTCACTATGGGGAAGT+GGG - chr6_4:358090-358109 Msa0968960:intron 45.0%
TCTGATCCTATCATGGCAAC+TGG - chr6_4:358185-358204 Msa0968960:intron 45.0%
ATCCTATCATGGCAACTGGA+TGG - chr6_4:358189-358208 Msa0968960:intron 45.0%
TCCTATCATGGCAACTGGAT+GGG - chr6_4:358190-358209 Msa0968960:intron 45.0%
! AAGAGGAAAGGGTGTGTGAA+AGG - chr6_4:358342-358361 Msa0968960:CDS 45.0%
AGAATCGCTAATGCCACAAG+GGG + chr6_4:358455-358474 None:intergenic 45.0%
TAAGACTCCCACTTACAGCA+GGG + chr6_4:358487-358506 None:intergenic 45.0%
TTAAGACTCCCACTTACAGC+AGG + chr6_4:358488-358507 None:intergenic 45.0%
GCTAACAGCGCTTCCAAAAA+TGG + chr6_4:358552-358571 None:intergenic 45.0%
!! TTTGGAAGCGCTGTTAGCTA+TGG - chr6_4:358554-358573 Msa0968960:intron 45.0%
AGTTTAAATCTCCACCGGGA+TGG - chr6_4:358717-358736 Msa0968960:intron 45.0%
! TACTTTTACAACCATCCCGG+TGG + chr6_4:358731-358750 None:intergenic 45.0%
GCAGTCTTACCCGAAAATTG+AGG + chr6_4:358986-359005 None:intergenic 45.0%
! TGCGACTCTTTTCCATCACT+AGG + chr6_4:359008-359027 None:intergenic 45.0%
! TAGTGATGGAAAAGAGTCGC+AGG - chr6_4:359007-359026 Msa0968960:intron 45.0%
! GAATGCTAGTGCTTTTGGAC+AGG - chr6_4:359537-359556 Msa0968960:CDS 45.0%
GATGACTTTACTGCTACGCT+AGG - chr6_4:359762-359781 Msa0968960:CDS 45.0%
! GAAGTGCCCCAGAAGAAGAA+CGG + chr6_4:356783-356802 None:intergenic 50.0%
CACTTCTTTCATCGCCACCA+TGG + chr6_4:356805-356824 None:intergenic 50.0%
TCGTTTCGTCTCATTCCTGC+CGG - chr6_4:356855-356874 Msa0968960:three_prime_UTR 50.0%
!! TTCCTTCTGGCTTCCATGCT+TGG - chr6_4:356919-356938 Msa0968960:three_prime_UTR 50.0%
GACGAGAGCAAATATGGCGA+TGG + chr6_4:356949-356968 None:intergenic 50.0%
! GTCGATGCTGCTTGCTTTCA+GGG - chr6_4:356966-356985 Msa0968960:three_prime_UTR 50.0%
GGCGAGTCCATTGGAATTGT+TGG - chr6_4:357716-357735 Msa0968960:intron 50.0%
GGCAGCTCCAACAATTCCAA+TGG + chr6_4:357726-357745 None:intergenic 50.0%
TTGGAATTGTTGGAGCTGCC+GGG - chr6_4:357726-357745 Msa0968960:intron 50.0%
!! GGGCTTGTACTTGGTGTCAT+AGG - chr6_4:357746-357765 Msa0968960:intron 50.0%
GGGAGCAACTTCTCACTATG+GGG - chr6_4:358083-358102 Msa0968960:intron 50.0%
CTTCTCACTATGGGGAAGTG+GGG - chr6_4:358091-358110 Msa0968960:intron 50.0%
CAGTTGGCACTGTCATGGTT+CGG - chr6_4:358147-358166 Msa0968960:intron 50.0%
ACCCATCCAGTTGCCATGAT+AGG + chr6_4:358194-358213 None:intergenic 50.0%
GAATCGCTAATGCCACAAGG+GGG + chr6_4:358454-358473 None:intergenic 50.0%
AACAACGACCCTGCTGTAAG+TGG - chr6_4:358476-358495 Msa0968960:intron 50.0%
ACAACGACCCTGCTGTAAGT+GGG - chr6_4:358477-358496 Msa0968960:intron 50.0%
!! GTGGAAGGCGTGAACCATTT+TGG + chr6_4:358773-358792 None:intergenic 50.0%
CTGGCTCCAACAATCTGTAC+AGG + chr6_4:359386-359405 None:intergenic 50.0%
! TAGTGCTTTTGGACAGGGTG+AGG - chr6_4:359543-359562 Msa0968960:CDS 50.0%
!! CTTCTTCTGGGGCACTTCCA+TGG - chr6_4:356785-356804 Msa0968960:intron 55.0%
CGTTTCGTCTCATTCCTGCC+GGG - chr6_4:356856-356875 Msa0968960:three_prime_UTR 55.0%
!! AGAGGAAGGGCGTTTCCTTC+TGG - chr6_4:356906-356925 Msa0968960:three_prime_UTR 55.0%
AGCCAAGCATGGAAGCCAGA+AGG + chr6_4:356924-356943 None:intergenic 55.0%
! CGTCGATGCTGCTTGCTTTC+AGG - chr6_4:356965-356984 Msa0968960:three_prime_UTR 55.0%
TATGGGGAAGTGGGGAGATG+TGG - chr6_4:358099-358118 Msa0968960:intron 55.0%
GCTTCTTGCAGCTCAGAGCA+TGG - chr6_4:358124-358143 Msa0968960:intron 55.0%
CATGGCAGTTGGCACTGTCA+TGG - chr6_4:358142-358161 Msa0968960:intron 55.0%
! TTGGCACTGTCATGGTTCGG+TGG - chr6_4:358150-358169 Msa0968960:intron 55.0%
!! TGGCACTGTCATGGTTCGGT+GGG - chr6_4:358151-358170 Msa0968960:intron 55.0%
! TATTGGTGGTCTCCCCCTTG+TGG - chr6_4:358439-358458 Msa0968960:intron 55.0%
CGGGTAAGACTGCCTAGTGA+TGG - chr6_4:358993-359012 Msa0968960:intron 55.0%
!! CTTCTGGGGCACTTCCATGG+TGG - chr6_4:356788-356807 Msa0968960:intron 60.0%
GCAACAAGAAGGAACCCGGC+AGG + chr6_4:356873-356892 None:intergenic 60.0%
TGGCGATGGAGAGCCAAGCA+TGG + chr6_4:356935-356954 None:intergenic 60.0%
GCAGCTCAGAGCATGGCAGT+TGG - chr6_4:358131-358150 Msa0968960:intron 60.0%
GGAGCTGCCGGGCTTGTACT+TGG - chr6_4:357737-357756 Msa0968960:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 356651 359861 356651 ID=Msa0968960;Name=Msa0968960
chr6_4 mRNA 356651 359861 356651 ID=Msa0968960-mRNA-1;Parent=Msa0968960;Name=Msa0968960-mRNA-1;_AED=0.35;_eAED=0.35;_QI=9|1|1|1|0.83|0.71|7|341|327
chr6_4 exon 356651 356764 356651 ID=Msa0968960-mRNA-1:exon:239;Parent=Msa0968960-mRNA-1
chr6_4 exon 356828 357157 356828 ID=Msa0968960-mRNA-1:exon:238;Parent=Msa0968960-mRNA-1
chr6_4 exon 357517 357577 357517 ID=Msa0968960-mRNA-1:exon:237;Parent=Msa0968960-mRNA-1
chr6_4 exon 357910 358081 357910 ID=Msa0968960-mRNA-1:exon:236;Parent=Msa0968960-mRNA-1
chr6_4 exon 358301 358450 358301 ID=Msa0968960-mRNA-1:exon:235;Parent=Msa0968960-mRNA-1
chr6_4 exon 358728 358850 358728 ID=Msa0968960-mRNA-1:exon:234;Parent=Msa0968960-mRNA-1
chr6_4 exon 359478 359861 359478 ID=Msa0968960-mRNA-1:exon:233;Parent=Msa0968960-mRNA-1
chr6_4 five_prime_UTR 359853 359861 359853 ID=Msa0968960-mRNA-1:five_prime_utr;Parent=Msa0968960-mRNA-1
chr6_4 CDS 359478 359852 359478 ID=Msa0968960-mRNA-1:cds;Parent=Msa0968960-mRNA-1
chr6_4 CDS 358728 358850 358728 ID=Msa0968960-mRNA-1:cds;Parent=Msa0968960-mRNA-1
chr6_4 CDS 358301 358450 358301 ID=Msa0968960-mRNA-1:cds;Parent=Msa0968960-mRNA-1
chr6_4 CDS 357910 358081 357910 ID=Msa0968960-mRNA-1:cds;Parent=Msa0968960-mRNA-1
chr6_4 CDS 357517 357577 357517 ID=Msa0968960-mRNA-1:cds;Parent=Msa0968960-mRNA-1
chr6_4 CDS 357055 357157 357055 ID=Msa0968960-mRNA-1:cds;Parent=Msa0968960-mRNA-1
chr6_4 three_prime_UTR 356828 357054 356828 ID=Msa0968960-mRNA-1:three_prime_utr;Parent=Msa0968960-mRNA-1
chr6_4 three_prime_UTR 356651 356764 356651 ID=Msa0968960-mRNA-1:three_prime_utr;Parent=Msa0968960-mRNA-1
Gene Sequence

>Msa0968960

ATGGATAAGCCAGTAAAAGAGTGCCTCTTAAGTGCAGAAGAAGATGGAAAAGCAAGTGACAAAGATGAATCATTGCCAACGATAGTTGAAGGGTTATGGGAAGGTGCTGTGTTAATATCGCCGTTCTTCTTCTGGGGCACTTCCATGGTGGCGATGAAAGAAGTGATTCCGAAATGCGGTCCTTTTTTTGTTTCTTCGTTTCGTCTCATTCCTGCCGGGTTCCTTCTTGTTGCTTTTGCTGGTTCTAGAGGAAGGGCGTTTCCTTCTGGCTTCCATGCTTGGCTCTCCATCGCCATATTTGCTCTCGTCGATGCTGCTTGCTTTCAGGGTTTTCTCGCTGAAGGGTTAGAGAAAACTTCAGCTGGTTTGGGCAGTGTTATTATTGATTCACAACCTTTGACAGTGGCTATACTTGCGGCTTTGCTATTTGGCGAGTCCATTGGAATTGTTGGAGCTGCCGGGCTTGTACTTGGTGTCATAGGACTTGTGTTACTCGAGTTACCTTCCCTATCAATTGATGGGAGCAACTTCTCACTATGGGGAAGTGGGGAGATGTGGATGCTTCTTGCAGCTCAGAGCATGGCAGTTGGCACTGTCATGGTTCGGTGGGTCTCCAAGTACTCTGATCCTATCATGGCAACTGGATGGCATATGGTTATTGGTGGTCTCCCCCTTGTGGCATTAGCGATTCTTAACAACGACCCTGCTGTAAGTGGGAGTCTTAAAGATTACAGTTCAACTGATGTATTGGCACTCCTCTACATGTCCATTTTTGGAAGCGCTGTTAGCTATGGTGTGTTCTTTTACAGTGCAACTAAAGGTAGCTTGACCAAGCTCAGTTCACTTACATTTCTAACCCCAATGTTTGCCTCAATTTTCGGGTTTCTGTATCTTGGTGAGACCTTTTCACCTGTACAGATTGTTGGAGCCAGTATTACTGTAGCTGCAATATACATGGTTAACTTTAGAAACACTTCGGAATGA

Protein sequence

>Msa0968960

MDKPVKECLLSAEEDGKASDKDESLPTIVEGLWEGAVLISPFFFWGTSMVAMKEVIPKCGPFFVSSFRLIPAGFLLVAFAGSRGRAFPSGFHAWLSIAIFALVDAACFQGFLAEGLEKTSAGLGSVIIDSQPLTVAILAALLFGESIGIVGAAGLVLGVIGLVLLELPSLSIDGSNFSLWGSGEMWMLLAAQSMAVGTVMVRWVSKYSDPIMATGWHMVIGGLPLVALAILNNDPAVSGSLKDYSSTDVLALLYMSIFGSAVSYGVFFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPVQIVGASITVAAIYMVNFRNTSE*