Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188910 | XP_003628404.1 | 93.846 | 195 | 12 | 0 | 9 | 203 | 1 | 195 | 1.42e-131 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188910 | sp|P49332|GSTXC_TOBAC | 70.707 | 198 | 57 | 1 | 11 | 207 | 4 | 201 | 1.17e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002540 | Msa1188910 | 0.803479 | 3.418820e-49 | -8.615850e-47 |
| Msa0008340 | Msa1188910 | 0.831446 | 1.661259e-55 | -8.615850e-47 |
| Msa0011720 | Msa1188910 | 0.812564 | 3.979484e-51 | -8.615850e-47 |
| Msa0015300 | Msa1188910 | 0.800963 | 1.126141e-48 | -8.615850e-47 |
| Msa0032370 | Msa1188910 | 0.811908 | 5.532253e-51 | -8.615850e-47 |
| Msa0046100 | Msa1188910 | 0.802445 | 5.590673e-49 | -8.615850e-47 |
| Msa0047980 | Msa1188910 | 0.804149 | 2.481390e-49 | -8.615850e-47 |
| Msa0050730 | Msa1188910 | 0.807557 | 4.768838e-50 | -8.615850e-47 |
| Msa0050760 | Msa1188910 | 0.821829 | 3.278326e-53 | -8.615850e-47 |
| Msa0105420 | Msa1188910 | 0.819168 | 1.338074e-52 | -8.615850e-47 |
| Msa0114540 | Msa1188910 | -0.803114 | 4.067934e-49 | -8.615850e-47 |
| Msa0620810 | Msa1188910 | 0.811090 | 8.329741e-51 | -8.615850e-47 |
| Msa0693380 | Msa1188910 | 0.803678 | 3.108946e-49 | -8.615850e-47 |
| Msa0703230 | Msa1188910 | 0.806245 | 9.033435e-50 | -8.615850e-47 |
| Msa0124340 | Msa1188910 | 0.817237 | 3.658731e-52 | -8.615850e-47 |
| Msa0172350 | Msa1188910 | 0.801833 | 7.471855e-49 | -8.615850e-47 |
| Msa0186890 | Msa1188910 | 0.805645 | 1.207833e-49 | -8.615850e-47 |
| Msa0205850 | Msa1188910 | 0.830702 | 2.531116e-55 | -8.615850e-47 |
| Msa0222920 | Msa1188910 | 0.812952 | 3.272368e-51 | -8.615850e-47 |
| Msa0449830 | Msa1188910 | 0.827931 | 1.190763e-54 | -8.615850e-47 |
| Msa0452960 | Msa1188910 | 0.807581 | 4.714077e-50 | -8.615850e-47 |
| Msa1052830 | Msa1188910 | 0.816828 | 4.522560e-52 | -8.615850e-47 |
| Msa1082500 | Msa1188910 | 0.804835 | 1.785050e-49 | -8.615850e-47 |
| Msa1087470 | Msa1188910 | 0.829658 | 4.551302e-55 | -8.615850e-47 |
| Msa0243710 | Msa1188910 | 0.810963 | 8.873825e-51 | -8.615850e-47 |
| Msa0258760 | Msa1188910 | 0.807820 | 4.193784e-50 | -8.615850e-47 |
| Msa0260810 | Msa1188910 | 0.801697 | 7.968206e-49 | -8.615850e-47 |
| Msa0264350 | Msa1188910 | 0.803753 | 2.998350e-49 | -8.615850e-47 |
| Msa0276920 | Msa1188910 | 0.805054 | 1.606305e-49 | -8.615850e-47 |
| Msa0287310 | Msa1188910 | 0.808194 | 3.490948e-50 | -8.615850e-47 |
| Msa0296560 | Msa1188910 | 0.806582 | 7.669104e-50 | -8.615850e-47 |
| Msa0299890 | Msa1188910 | 0.803601 | 3.225313e-49 | -8.615850e-47 |
| Msa0311700 | Msa1188910 | 0.830369 | 3.052789e-55 | -8.615850e-47 |
| Msa0325850 | Msa1188910 | 0.809443 | 1.887238e-50 | -8.615850e-47 |
| Msa0335040 | Msa1188910 | 0.828129 | 1.067500e-54 | -8.615850e-47 |
| Msa1127890 | Msa1188910 | 0.800559 | 1.361426e-48 | -8.615850e-47 |
| Msa1188910 | Msa1218960 | 0.803699 | 3.077931e-49 | -8.615850e-47 |
| Msa1188910 | Msa1243010 | 0.816368 | 5.733248e-52 | -8.615850e-47 |
| Msa1188910 | Msa1267840 | 0.810813 | 9.563719e-51 | -8.615850e-47 |
| Msa1188910 | Msa1284490 | 0.826240 | 3.023539e-54 | -8.615850e-47 |
| Msa1188910 | Msa1295630 | 0.815674 | 8.193047e-52 | -8.615850e-47 |
| Msa1188910 | Msa1307950 | 0.801088 | 1.061694e-48 | -8.615850e-47 |
| Msa1188910 | Msa1363590 | 0.814797 | 1.283177e-51 | -8.615850e-47 |
| Msa1188910 | Msa1373330 | 0.807302 | 5.401852e-50 | -8.615850e-47 |
| Msa1188910 | Msa1404540 | 0.808809 | 2.580417e-50 | -8.615850e-47 |
| Msa1188910 | Msa1408790 | 0.838584 | 2.636478e-57 | -8.615850e-47 |
| Msa1188910 | Msa1436040 | 0.833585 | 4.900896e-56 | -8.615850e-47 |
| Msa1188910 | Msa1440600 | 0.822999 | 1.753855e-53 | -8.615850e-47 |
| Msa1188910 | Msa1466460 | 0.804080 | 2.564896e-49 | -8.615850e-47 |
| Msa0484780 | Msa1188910 | 0.815293 | 9.957919e-52 | -8.615850e-47 |
| Msa0495320 | Msa1188910 | 0.810118 | 1.351009e-50 | -8.615850e-47 |
| Msa0506890 | Msa1188910 | 0.812924 | 3.318916e-51 | -8.615850e-47 |
| Msa0526710 | Msa1188910 | 0.801751 | 7.767759e-49 | -8.615850e-47 |
| Msa0541860 | Msa1188910 | 0.807574 | 4.729696e-50 | -8.615850e-47 |
| Msa0546300 | Msa1188910 | 0.800103 | 1.686038e-48 | -8.615850e-47 |
| Msa0585900 | Msa1188910 | 0.813926 | 1.998385e-51 | -8.615850e-47 |
| Msa0893810 | Msa1188910 | 0.819932 | 8.956505e-53 | -8.615850e-47 |
| Msa0908170 | Msa1188910 | 0.824678 | 7.086096e-54 | -8.615850e-47 |
| Msa0910980 | Msa1188910 | -0.805917 | 1.059118e-49 | -8.615850e-47 |
| Msa0933230 | Msa1188910 | 0.802090 | 6.617089e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188910 | MtrunA17_Chr8g0357241 | 93.846 | 195 | 12 | 0 | 9 | 203 | 1 | 195 | 1.31e-135 | 380 |
| Msa1188910 | MtrunA17_Chr8g0357211 | 93.333 | 195 | 13 | 0 | 9 | 203 | 1 | 195 | 2.05e-135 | 379 |
| Msa1188910 | MtrunA17_Chr2g0312771 | 65.829 | 199 | 68 | 0 | 9 | 207 | 1 | 199 | 1.23e-94 | 276 |
| Msa1188910 | MtrunA17_Chr2g0312781 | 63.285 | 207 | 76 | 0 | 1 | 207 | 10 | 216 | 6.88e-94 | 275 |
| Msa1188910 | MtrunA17_Chr2g0312681 | 60.369 | 217 | 85 | 1 | 9 | 225 | 1 | 216 | 1.24e-93 | 273 |
| Msa1188910 | MtrunA17_Chr2g0312691 | 65.829 | 199 | 68 | 0 | 9 | 207 | 1 | 199 | 1.34e-93 | 273 |
| Msa1188910 | MtrunA17_Chr2g0312751 | 66.154 | 195 | 66 | 0 | 9 | 203 | 1 | 195 | 2.05e-93 | 273 |
| Msa1188910 | MtrunA17_Chr2g0312731 | 61.809 | 199 | 76 | 0 | 9 | 207 | 1 | 199 | 4.58e-89 | 262 |
| Msa1188910 | MtrunA17_Chr2g0312791 | 60.190 | 211 | 83 | 1 | 9 | 218 | 1 | 211 | 2.36e-88 | 260 |
| Msa1188910 | MtrunA17_Chr2g0312711 | 57.991 | 219 | 90 | 2 | 9 | 227 | 1 | 217 | 1.25e-84 | 250 |
| Msa1188910 | MtrunA17_Chr3g0107731 | 56.923 | 195 | 84 | 0 | 13 | 207 | 10 | 204 | 8.78e-84 | 248 |
| Msa1188910 | MtrunA17_Chr3g0107741 | 56.345 | 197 | 86 | 0 | 11 | 207 | 8 | 204 | 3.29e-83 | 247 |
| Msa1188910 | MtrunA17_Chr2g0312811 | 60.199 | 201 | 78 | 1 | 9 | 207 | 1 | 201 | 3.55e-83 | 247 |
| Msa1188910 | MtrunA17_Chr4g0069471 | 64.674 | 184 | 62 | 2 | 8 | 190 | 21 | 202 | 8.81e-83 | 245 |
| Msa1188910 | MtrunA17_Chr2g0312721 | 58.974 | 195 | 80 | 0 | 9 | 203 | 1 | 195 | 2.11e-80 | 240 |
| Msa1188910 | MtrunA17_Chr5g0433801 | 51.010 | 198 | 95 | 2 | 7 | 203 | 1 | 197 | 6.63e-66 | 203 |
| Msa1188910 | MtrunA17_Chr7g0240681 | 43.229 | 192 | 103 | 4 | 8 | 195 | 3 | 192 | 1.36e-43 | 146 |
| Msa1188910 | MtrunA17_Chr4g0008781 | 40.722 | 194 | 110 | 4 | 5 | 195 | 1 | 192 | 1.51e-43 | 146 |
| Msa1188910 | MtrunA17_Chr7g0240611 | 46.237 | 186 | 95 | 5 | 11 | 195 | 6 | 187 | 1.75e-43 | 145 |
| Msa1188910 | MtrunA17_Chr7g0240641 | 42.932 | 191 | 104 | 4 | 8 | 195 | 3 | 191 | 1.07e-42 | 144 |
| Msa1188910 | MtrunA17_Chr5g0417011 | 35.909 | 220 | 134 | 2 | 10 | 222 | 5 | 224 | 1.66e-42 | 143 |
| Msa1188910 | MtrunA17_Chr7g0240691 | 44.974 | 189 | 98 | 4 | 11 | 195 | 36 | 222 | 4.31e-42 | 143 |
| Msa1188910 | MtrunA17_Chr3g0132581 | 47.059 | 170 | 88 | 2 | 9 | 177 | 1 | 169 | 4.91e-42 | 142 |
| Msa1188910 | MtrunA17_Chr7g0240631 | 41.361 | 191 | 107 | 4 | 8 | 195 | 3 | 191 | 8.43e-42 | 142 |
| Msa1188910 | MtrunA17_Chr4g0029341 | 41.379 | 203 | 114 | 3 | 9 | 207 | 1 | 202 | 9.91e-42 | 141 |
| Msa1188910 | MtrunA17_Chr5g0415411 | 43.523 | 193 | 100 | 4 | 12 | 195 | 5 | 197 | 4.50e-41 | 140 |
| Msa1188910 | MtrunA17_Chr1g0196661 | 42.391 | 184 | 101 | 3 | 19 | 198 | 10 | 192 | 2.06e-40 | 138 |
| Msa1188910 | MtrunA17_Chr8g0379581 | 39.247 | 186 | 110 | 2 | 10 | 193 | 3 | 187 | 2.19e-40 | 138 |
| Msa1188910 | MtrunA17_Chr4g0008791 | 40.201 | 199 | 114 | 4 | 12 | 207 | 7 | 203 | 2.56e-40 | 138 |
| Msa1188910 | MtrunA17_Chr7g0240541 | 39.713 | 209 | 112 | 6 | 21 | 224 | 16 | 215 | 1.63e-38 | 133 |
| Msa1188910 | MtrunA17_Chr8g0379561 | 39.459 | 185 | 109 | 2 | 11 | 193 | 5 | 188 | 1.75e-38 | 133 |
| Msa1188910 | MtrunA17_Chr7g0240671 | 47.170 | 159 | 81 | 3 | 9 | 166 | 1 | 157 | 1.75e-38 | 133 |
| Msa1188910 | MtrunA17_Chr7g0240531 | 43.575 | 179 | 94 | 5 | 21 | 195 | 16 | 191 | 4.93e-38 | 132 |
| Msa1188910 | MtrunA17_Chr1g0196721 | 43.478 | 184 | 99 | 3 | 19 | 198 | 9 | 191 | 4.77e-37 | 129 |
| Msa1188910 | MtrunA17_Chr7g0240651 | 46.875 | 160 | 82 | 3 | 8 | 166 | 3 | 160 | 7.57e-37 | 129 |
| Msa1188910 | MtrunA17_Chr7g0240561 | 38.806 | 201 | 116 | 5 | 11 | 207 | 6 | 203 | 8.02e-37 | 129 |
| Msa1188910 | MtrunA17_Chr1g0196691 | 41.327 | 196 | 101 | 5 | 12 | 198 | 28 | 218 | 1.00e-36 | 129 |
| Msa1188910 | MtrunA17_Chr1g0196771 | 44.304 | 158 | 82 | 4 | 11 | 165 | 2 | 156 | 4.13e-36 | 127 |
| Msa1188910 | MtrunA17_Chr1g0212301 | 39.500 | 200 | 111 | 4 | 15 | 207 | 6 | 202 | 5.16e-36 | 126 |
| Msa1188910 | MtrunA17_Chr7g0240551 | 41.573 | 178 | 99 | 4 | 21 | 195 | 16 | 191 | 6.56e-36 | 126 |
| Msa1188910 | MtrunA17_Chr6g0483141 | 46.795 | 156 | 76 | 4 | 27 | 178 | 16 | 168 | 2.31e-35 | 125 |
| Msa1188910 | MtrunA17_Chr8g0363751 | 39.791 | 191 | 106 | 5 | 15 | 196 | 8 | 198 | 3.70e-35 | 125 |
| Msa1188910 | MtrunA17_Chr7g0240511 | 40.212 | 189 | 103 | 5 | 11 | 196 | 6 | 187 | 4.09e-35 | 124 |
| Msa1188910 | MtrunA17_Chr7g0240581 | 40.741 | 189 | 105 | 5 | 11 | 195 | 6 | 191 | 9.53e-35 | 123 |
| Msa1188910 | MtrunA17_Chr1g0196711 | 46.711 | 152 | 78 | 3 | 19 | 168 | 10 | 160 | 4.06e-34 | 122 |
| Msa1188910 | MtrunA17_Chr7g0240661 | 46.835 | 158 | 81 | 3 | 8 | 164 | 3 | 158 | 5.04e-34 | 121 |
| Msa1188910 | MtrunA17_Chr7g0240521 | 38.308 | 201 | 115 | 6 | 1 | 195 | 1 | 198 | 2.76e-33 | 120 |
| Msa1188910 | MtrunA17_Chr8g0391631 | 40.123 | 162 | 89 | 5 | 5 | 159 | 15 | 175 | 3.56e-30 | 110 |
| Msa1188910 | MtrunA17_Chr2g0313561 | 66.176 | 68 | 23 | 0 | 55 | 122 | 1 | 68 | 3.19e-28 | 102 |
| Msa1188910 | MtrunA17_Chr5g0415421 | 45.205 | 73 | 38 | 2 | 36 | 106 | 11 | 83 | 2.82e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188910 | AT1G17170.1 | 66.154 | 195 | 65 | 1 | 9 | 203 | 1 | 194 | 7.67e-92 | 269 |
| Msa1188910 | AT1G78380.1 | 64.824 | 199 | 70 | 0 | 9 | 207 | 1 | 199 | 8.20e-92 | 269 |
| Msa1188910 | AT1G17180.1 | 64.322 | 199 | 71 | 0 | 9 | 207 | 1 | 199 | 1.34e-91 | 269 |
| Msa1188910 | AT1G78340.1 | 63.819 | 199 | 72 | 0 | 9 | 207 | 1 | 199 | 2.07e-91 | 268 |
| Msa1188910 | AT1G78370.1 | 61.809 | 199 | 76 | 0 | 9 | 207 | 1 | 199 | 4.31e-91 | 267 |
| Msa1188910 | AT1G78320.1 | 63.590 | 195 | 71 | 0 | 9 | 203 | 1 | 195 | 2.24e-86 | 255 |
| Msa1188910 | AT1G78360.1 | 63.265 | 196 | 71 | 1 | 9 | 203 | 1 | 196 | 6.11e-86 | 254 |
| Msa1188910 | AT1G17190.1 | 57.360 | 197 | 84 | 0 | 11 | 207 | 4 | 200 | 3.08e-80 | 240 |
| Msa1188910 | AT1G53680.1 | 55.330 | 197 | 86 | 2 | 13 | 207 | 8 | 204 | 1.39e-77 | 233 |
| Msa1188910 | AT3G43800.1 | 54.229 | 201 | 88 | 3 | 11 | 207 | 4 | 204 | 8.82e-69 | 211 |
| Msa1188910 | AT1G78320.2 | 53.846 | 195 | 63 | 1 | 9 | 203 | 1 | 168 | 2.91e-65 | 201 |
| Msa1188910 | AT3G09270.1 | 45.833 | 192 | 101 | 2 | 7 | 195 | 1 | 192 | 4.23e-46 | 153 |
| Msa1188910 | AT2G29420.1 | 44.382 | 178 | 90 | 4 | 10 | 183 | 7 | 179 | 1.28e-44 | 149 |
| Msa1188910 | AT1G10360.1 | 41.538 | 195 | 106 | 4 | 10 | 196 | 3 | 197 | 6.51e-42 | 142 |
| Msa1188910 | AT2G29440.1 | 48.485 | 165 | 73 | 4 | 11 | 168 | 5 | 164 | 2.10e-41 | 141 |
| Msa1188910 | AT1G10370.1 | 39.706 | 204 | 115 | 4 | 10 | 205 | 3 | 206 | 3.42e-41 | 140 |
| Msa1188910 | AT1G74590.1 | 47.826 | 138 | 65 | 2 | 12 | 142 | 7 | 144 | 7.39e-41 | 140 |
| Msa1188910 | AT2G29460.1 | 45.963 | 161 | 83 | 2 | 11 | 168 | 6 | 165 | 8.76e-41 | 139 |
| Msa1188910 | AT2G29490.1 | 45.342 | 161 | 84 | 2 | 11 | 168 | 6 | 165 | 1.26e-40 | 139 |
| Msa1188910 | AT2G29480.1 | 44.099 | 161 | 86 | 2 | 11 | 168 | 6 | 165 | 3.10e-40 | 138 |
| Msa1188910 | AT2G29450.1 | 48.466 | 163 | 77 | 4 | 11 | 168 | 5 | 165 | 3.40e-40 | 138 |
| Msa1188910 | AT1G59700.1 | 42.365 | 203 | 106 | 6 | 11 | 203 | 5 | 206 | 4.11e-39 | 135 |
| Msa1188910 | AT2G29470.1 | 37.850 | 214 | 126 | 5 | 15 | 223 | 10 | 221 | 5.52e-38 | 132 |
| Msa1188910 | AT1G27140.1 | 41.451 | 193 | 103 | 4 | 23 | 205 | 17 | 209 | 1.20e-37 | 132 |
| Msa1188910 | AT1G27130.1 | 38.119 | 202 | 116 | 4 | 15 | 207 | 9 | 210 | 1.22e-37 | 131 |
| Msa1188910 | AT1G59670.1 | 41.584 | 202 | 109 | 5 | 11 | 203 | 5 | 206 | 3.33e-37 | 130 |
| Msa1188910 | AT5G62480.1 | 36.872 | 179 | 105 | 1 | 13 | 183 | 9 | 187 | 1.09e-36 | 129 |
| Msa1188910 | AT1G69920.1 | 37.624 | 202 | 113 | 5 | 15 | 205 | 37 | 236 | 1.06e-35 | 127 |
| Msa1188910 | AT1G69930.1 | 36.139 | 202 | 122 | 3 | 11 | 205 | 11 | 212 | 3.23e-33 | 120 |
| Msa1188910 | AT5G62480.3 | 29.050 | 179 | 92 | 2 | 13 | 183 | 9 | 160 | 1.86e-20 | 86.3 |
| Msa1188910 | AT5G62480.2 | 29.050 | 179 | 93 | 2 | 13 | 183 | 9 | 161 | 2.60e-20 | 85.9 |
Find 62 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAGCTCAAGCAAGATTT+TGG | 0.147771 | 8_1:-29680272 | Msa1188910:CDS |
| AGGATAGCATTGGCTGAAAA+AGG | 0.234872 | 8_1:-29680486 | Msa1188910:CDS |
| AAAATGTAAACTAAACAATT+TGG | 0.242177 | 8_1:-29679533 | Msa1188910:three_prime_UTR |
| ACTTATTTGTATAACTATAT+TGG | 0.246318 | 8_1:+29679488 | None:intergenic |
| CTTGGAGACCAACCTTATTT+TGG | 0.247910 | 8_1:-29679831 | Msa1188910:CDS |
| ATAATGATGGATTCACAAAT+TGG | 0.249398 | 8_1:+29680357 | None:intergenic |
| GGAGTTGATTGAAGGCTTAA+AGG | 0.261757 | 8_1:-29679868 | Msa1188910:CDS |
| ACTGGAATCTTCTTGTGAAT+TGG | 0.280000 | 8_1:+29680399 | None:intergenic |
| TAAGACTATCATATTAATTA+AGG | 0.293716 | 8_1:+29679441 | None:intergenic |
| GACGAGATGACAATACTAAT+TGG | 0.297664 | 8_1:+29679290 | None:intergenic |
| TTTCTCATCAGCAACAGATT+TGG | 0.313491 | 8_1:+29679657 | None:intergenic |
| GATTCATTTGCAAAAGCATT+TGG | 0.343663 | 8_1:+29680421 | None:intergenic |
| GGTTGTTCCTATTAGTGCTT+TGG | 0.345626 | 8_1:-29679512 | Msa1188910:three_prime_UTR |
| GTGATGTTGGAGGAAGGATA+TGG | 0.346197 | 8_1:-29679926 | Msa1188910:CDS |
| CTTGCTTGAGCTTTCTGATA+AGG | 0.352610 | 8_1:+29680279 | None:intergenic |
| CTTTGAGAAATTGAACTTGT+TGG | 0.352774 | 8_1:-29679569 | Msa1188910:three_prime_UTR |
| TATTGGACCAAAGCACTAAT+AGG | 0.362495 | 8_1:+29679505 | None:intergenic |
| CACAAATTGGATTTCCCTCA+TGG | 0.406218 | 8_1:+29680370 | None:intergenic |
| TGATGAGGTTTGGAAGGATA+AGG | 0.411738 | 8_1:-29680322 | Msa1188910:CDS |
| GATGAATGGCTTAGTATGTT+TGG | 0.412400 | 8_1:-29680519 | Msa1188910:CDS |
| AAAGAGAGATGAGGTTGAAT+TGG | 0.422263 | 8_1:-29679898 | Msa1188910:CDS |
| AATGTGTTACCACCAAAATA+AGG | 0.428285 | 8_1:+29679819 | None:intergenic |
| TTGAGTATATTGATGAGGTT+TGG | 0.428745 | 8_1:-29680332 | Msa1188910:CDS |
| TTTCCCTCATGGATAAGAAC+TGG | 0.442706 | 8_1:+29680381 | None:intergenic |
| TAAGGATCTGAGGGTAGAAA+TGG | 0.447162 | 8_1:+29680297 | None:intergenic |
| TCTGTGGTTGTCTTTGACAA+TGG | 0.448156 | 8_1:-29680562 | Msa1188910:CDS |
| ATGAGTTTGTTGTTAACTAT+AGG | 0.457851 | 8_1:-29679627 | Msa1188910:CDS |
| TGAGGTTGAATTGGCAAAGA+AGG | 0.460493 | 8_1:-29679889 | Msa1188910:CDS |
| TATAAAACCAACTATGAAAA+GGG | 0.461833 | 8_1:+29679772 | None:intergenic |
| CTCAGGTCGGACGTCATGAT+CGG | 0.462911 | 8_1:-29679352 | Msa1188910:three_prime_UTR |
| GTATAAAACCAACTATGAAA+AGG | 0.463905 | 8_1:+29679771 | None:intergenic |
| TCAGGTCGGACGTCATGATC+GGG | 0.464930 | 8_1:-29679351 | Msa1188910:three_prime_UTR |
| AGTTGATATTACTTGATGAA+TGG | 0.465432 | 8_1:-29680533 | Msa1188910:CDS |
| CTATAGGAAGAGGTTTGAGT+TGG | 0.471565 | 8_1:-29679611 | Msa1188910:CDS |
| TCTATATCTTCGAAATTCTC+AGG | 0.474784 | 8_1:-29679369 | Msa1188910:three_prime_UTR |
| AAAATGCAGGTTGGTGATGT+TGG | 0.476506 | 8_1:-29679939 | Msa1188910:intron |
| GCAAAGAAGGAGTTGATTGA+AGG | 0.480756 | 8_1:-29679876 | Msa1188910:CDS |
| AATATACTCAACAATAATGA+TGG | 0.483925 | 8_1:+29680344 | None:intergenic |
| TGATGTTGGAGGAAGGATAT+GGG | 0.485671 | 8_1:-29679925 | Msa1188910:CDS |
| AAGGAATTAGAGAATGTGCT+TGG | 0.497037 | 8_1:-29679849 | Msa1188910:CDS |
| AGGGATAAAGTATGAGTACA+AGG | 0.524364 | 8_1:-29680466 | Msa1188910:CDS |
| GTGTGATAAGTTGATTGCTT+GGG | 0.528271 | 8_1:-29679712 | Msa1188910:CDS |
| TTGTTGTTAACTATAGGAAG+AGG | 0.543349 | 8_1:-29679621 | Msa1188910:CDS |
| ATTATGCAACTTCAAAGTTG+AGG | 0.546513 | 8_1:-29679739 | Msa1188910:CDS |
| GTATATTGATGAGGTTTGGA+AGG | 0.548215 | 8_1:-29680328 | Msa1188910:CDS |
| GTTGGAGGAAGGATATGGGC+TGG | 0.551186 | 8_1:-29679921 | Msa1188910:CDS |
| GTATGTTTGGTATGAGAGCA+AGG | 0.566057 | 8_1:-29680506 | Msa1188910:CDS |
| AGTGTGATAAGTTGATTGCT+TGG | 0.574483 | 8_1:-29679713 | Msa1188910:CDS |
| AGCTTTCTGATAAGGATCTG+AGG | 0.577878 | 8_1:+29680287 | None:intergenic |
| GCTTTCTGATAAGGATCTGA+GGG | 0.581759 | 8_1:+29680288 | None:intergenic |
| TTACAATTCTCTAGGCTCTG+TGG | 0.586400 | 8_1:-29680578 | Msa1188910:intron |
| TGTTACCACCAAAATAAGGT+TGG | 0.599332 | 8_1:+29679823 | None:intergenic |
| TATTGTTGAGTATATTGATG+AGG | 0.599628 | 8_1:-29680337 | Msa1188910:CDS |
| ATGCAGGTTGGTGATGTTGG+AGG | 0.604533 | 8_1:-29679936 | Msa1188910:intron |
| GTTGTCTTTGACAATGGCAG+AGG | 0.605201 | 8_1:-29680556 | Msa1188910:CDS |
| TATGAGAGCAAGGATAGCAT+TGG | 0.605598 | 8_1:-29680496 | Msa1188910:CDS |
| ATTCCAGTTCTTATCCATGA+GGG | 0.615154 | 8_1:-29680384 | Msa1188910:CDS |
| TATCTTCGAAATTCTCAGGT+CGG | 0.633724 | 8_1:-29679365 | Msa1188910:three_prime_UTR |
| AAACTGAAACACATAAGTAG+AGG | 0.640204 | 8_1:+29679313 | None:intergenic |
| GATTCCAGTTCTTATCCATG+AGG | 0.647058 | 8_1:-29680385 | Msa1188910:CDS |
| AGGTTGGTGATGTTGGAGGA+AGG | 0.655636 | 8_1:-29679932 | Msa1188910:CDS |
| ATGGGCTGGAAAGAGAGATG+AGG | 0.657405 | 8_1:-29679907 | Msa1188910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATTTTTATTTATTTAC+TGG | + | chr8_1:29679775-29679794 | None:intergenic | 10.0% |
| !!! | AGATATTTTTATTTATTTAC+TGG | + | chr8_1:29679775-29679794 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTATTTACTGGT+AGG | + | chr8_1:29679771-29679790 | None:intergenic | 15.0% |
| !! | AAAATGTAAACTAAACAATT+TGG | - | chr8_1:29680416-29680435 | Msa1188910:CDS | 15.0% |
| !! | ACTTATTTGTATAACTATAT+TGG | + | chr8_1:29680464-29680483 | None:intergenic | 15.0% |
| !! | TAAGACTATCATATTAATTA+AGG | + | chr8_1:29680511-29680530 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTATTTACTGGT+AGG | + | chr8_1:29679771-29679790 | None:intergenic | 15.0% |
| !! | AAAATGTAAACTAAACAATT+TGG | - | chr8_1:29680416-29680435 | Msa1188910:CDS | 15.0% |
| !! | ACTTATTTGTATAACTATAT+TGG | + | chr8_1:29680464-29680483 | None:intergenic | 15.0% |
| !! | TAAGACTATCATATTAATTA+AGG | + | chr8_1:29680511-29680530 | None:intergenic | 15.0% |
| !! | AATATACTCAACAATAATGA+TGG | + | chr8_1:29679608-29679627 | None:intergenic | 20.0% |
| !! | TGTTAATTAAGTCATTGAAT+GGG | + | chr8_1:29679740-29679759 | None:intergenic | 20.0% |
| !! | ATGTTAATTAAGTCATTGAA+TGG | + | chr8_1:29679741-29679760 | None:intergenic | 20.0% |
| !! | TATCCATATTAATAATGACT+AGG | - | chr8_1:29679929-29679948 | Msa1188910:CDS | 20.0% |
| !! | ATGTGTTAAAAAAAAAATGC+AGG | - | chr8_1:29679997-29680016 | Msa1188910:intron | 20.0% |
| !! | TATAAAACCAACTATGAAAA+GGG | + | chr8_1:29680180-29680199 | None:intergenic | 20.0% |
| !! | AATATACTCAACAATAATGA+TGG | + | chr8_1:29679608-29679627 | None:intergenic | 20.0% |
| !! | TGTTAATTAAGTCATTGAAT+GGG | + | chr8_1:29679740-29679759 | None:intergenic | 20.0% |
| !! | ATGTTAATTAAGTCATTGAA+TGG | + | chr8_1:29679741-29679760 | None:intergenic | 20.0% |
| !! | TATCCATATTAATAATGACT+AGG | - | chr8_1:29679929-29679948 | Msa1188910:CDS | 20.0% |
| !! | ATGTGTTAAAAAAAAAATGC+AGG | - | chr8_1:29679997-29680016 | Msa1188910:intron | 20.0% |
| !! | TATAAAACCAACTATGAAAA+GGG | + | chr8_1:29680180-29680199 | None:intergenic | 20.0% |
| !! | AGTTGATATTACTTGATGAA+TGG | - | chr8_1:29679416-29679435 | Msa1188910:three_prime_UTR | 25.0% |
| !!! | ATAATGATGGATTCACAAAT+TGG | + | chr8_1:29679595-29679614 | None:intergenic | 25.0% |
| ! | TATTGTTGAGTATATTGATG+AGG | - | chr8_1:29679612-29679631 | Msa1188910:CDS | 25.0% |
| ! | CATTCTACATATTTCATCAA+AGG | - | chr8_1:29679881-29679900 | Msa1188910:CDS | 25.0% |
| ! | CAACCTAGTCATTATTAATA+TGG | + | chr8_1:29679935-29679954 | None:intergenic | 25.0% |
| ! | GTTAAAAAAAAAATGCAGGT+TGG | - | chr8_1:29680001-29680020 | Msa1188910:intron | 25.0% |
| ! | GTATAAAACCAACTATGAAA+AGG | + | chr8_1:29680181-29680200 | None:intergenic | 25.0% |
| !!! | ATGAGTTTGTTGTTAACTAT+AGG | - | chr8_1:29680322-29680341 | Msa1188910:CDS | 25.0% |
| !! | AGTTGATATTACTTGATGAA+TGG | - | chr8_1:29679416-29679435 | Msa1188910:three_prime_UTR | 25.0% |
| !!! | ATAATGATGGATTCACAAAT+TGG | + | chr8_1:29679595-29679614 | None:intergenic | 25.0% |
| ! | TATTGTTGAGTATATTGATG+AGG | - | chr8_1:29679612-29679631 | Msa1188910:CDS | 25.0% |
| ! | CATTCTACATATTTCATCAA+AGG | - | chr8_1:29679881-29679900 | Msa1188910:CDS | 25.0% |
| ! | CAACCTAGTCATTATTAATA+TGG | + | chr8_1:29679935-29679954 | None:intergenic | 25.0% |
| ! | GTTAAAAAAAAAATGCAGGT+TGG | - | chr8_1:29680001-29680020 | Msa1188910:intron | 25.0% |
| ! | GTATAAAACCAACTATGAAA+AGG | + | chr8_1:29680181-29680200 | None:intergenic | 25.0% |
| !!! | ATGAGTTTGTTGTTAACTAT+AGG | - | chr8_1:29680322-29680341 | Msa1188910:CDS | 25.0% |
| CTAGTTGTTTACAATTCTCT+AGG | - | chr8_1:29679363-29679382 | Msa1188910:three_prime_UTR | 30.0% | |
| !! | GATTCATTTGCAAAAGCATT+TGG | + | chr8_1:29679531-29679550 | None:intergenic | 30.0% |
| TTGAGTATATTGATGAGGTT+TGG | - | chr8_1:29679617-29679636 | Msa1188910:CDS | 30.0% | |
| CTACATATTTCATCAAAGGA+TGG | - | chr8_1:29679885-29679904 | Msa1188910:CDS | 30.0% | |
| AATGTGTTACCACCAAAATA+AGG | + | chr8_1:29680133-29680152 | None:intergenic | 30.0% | |
| !!! | TATTTTGGTGGTAACACATT+TGG | - | chr8_1:29680133-29680152 | Msa1188910:intron | 30.0% |
| !! | ATTTTGGTGGTAACACATTT+GGG | - | chr8_1:29680134-29680153 | Msa1188910:intron | 30.0% |
| ATTATGCAACTTCAAAGTTG+AGG | - | chr8_1:29680210-29680229 | Msa1188910:intron | 30.0% | |
| ! | TTGTTGTTAACTATAGGAAG+AGG | - | chr8_1:29680328-29680347 | Msa1188910:CDS | 30.0% |
| ! | CTTTGAGAAATTGAACTTGT+TGG | - | chr8_1:29680380-29680399 | Msa1188910:CDS | 30.0% |
| TCTATATCTTCGAAATTCTC+AGG | - | chr8_1:29680580-29680599 | Msa1188910:intron | 30.0% | |
| AAACTGAAACACATAAGTAG+AGG | + | chr8_1:29680639-29680658 | None:intergenic | 30.0% | |
| CTAGTTGTTTACAATTCTCT+AGG | - | chr8_1:29679363-29679382 | Msa1188910:three_prime_UTR | 30.0% | |
| !! | GATTCATTTGCAAAAGCATT+TGG | + | chr8_1:29679531-29679550 | None:intergenic | 30.0% |
| TTGAGTATATTGATGAGGTT+TGG | - | chr8_1:29679617-29679636 | Msa1188910:CDS | 30.0% | |
| CTACATATTTCATCAAAGGA+TGG | - | chr8_1:29679885-29679904 | Msa1188910:CDS | 30.0% | |
| AATGTGTTACCACCAAAATA+AGG | + | chr8_1:29680133-29680152 | None:intergenic | 30.0% | |
| !!! | TATTTTGGTGGTAACACATT+TGG | - | chr8_1:29680133-29680152 | Msa1188910:intron | 30.0% |
| !! | ATTTTGGTGGTAACACATTT+GGG | - | chr8_1:29680134-29680153 | Msa1188910:intron | 30.0% |
| ATTATGCAACTTCAAAGTTG+AGG | - | chr8_1:29680210-29680229 | Msa1188910:intron | 30.0% | |
| ! | TTGTTGTTAACTATAGGAAG+AGG | - | chr8_1:29680328-29680347 | Msa1188910:CDS | 30.0% |
| ! | CTTTGAGAAATTGAACTTGT+TGG | - | chr8_1:29680380-29680399 | Msa1188910:CDS | 30.0% |
| TCTATATCTTCGAAATTCTC+AGG | - | chr8_1:29680580-29680599 | Msa1188910:intron | 30.0% | |
| AAACTGAAACACATAAGTAG+AGG | + | chr8_1:29680639-29680658 | None:intergenic | 30.0% | |
| GATGAATGGCTTAGTATGTT+TGG | - | chr8_1:29679430-29679449 | Msa1188910:three_prime_UTR | 35.0% | |
| AGGGATAAAGTATGAGTACA+AGG | - | chr8_1:29679483-29679502 | Msa1188910:three_prime_UTR | 35.0% | |
| ACTGGAATCTTCTTGTGAAT+TGG | + | chr8_1:29679553-29679572 | None:intergenic | 35.0% | |
| ATTCCAGTTCTTATCCATGA+GGG | - | chr8_1:29679565-29679584 | Msa1188910:three_prime_UTR | 35.0% | |
| GTATATTGATGAGGTTTGGA+AGG | - | chr8_1:29679621-29679640 | Msa1188910:CDS | 35.0% | |
| ! | AGAAAGCTCAAGCAAGATTT+TGG | - | chr8_1:29679677-29679696 | Msa1188910:CDS | 35.0% |
| ! | GAAAGCTCAAGCAAGATTTT+GGG | - | chr8_1:29679678-29679697 | Msa1188910:CDS | 35.0% |
| !! | GGCTGATTTTGTCAACAAAA+AGG | - | chr8_1:29679699-29679718 | Msa1188910:CDS | 35.0% |
| AAAGAGAGATGAGGTTGAAT+TGG | - | chr8_1:29680051-29680070 | Msa1188910:intron | 35.0% | |
| AAGGAATTAGAGAATGTGCT+TGG | - | chr8_1:29680100-29680119 | Msa1188910:intron | 35.0% | |
| TGTTACCACCAAAATAAGGT+TGG | + | chr8_1:29680129-29680148 | None:intergenic | 35.0% | |
| ! | CTTTGATCCCTTTTCATAGT+TGG | - | chr8_1:29680170-29680189 | Msa1188910:intron | 35.0% |
| !! | AGTGTGATAAGTTGATTGCT+TGG | - | chr8_1:29680236-29680255 | Msa1188910:intron | 35.0% |
| !! | GTGTGATAAGTTGATTGCTT+GGG | - | chr8_1:29680237-29680256 | Msa1188910:intron | 35.0% |
| TTTCTCATCAGCAACAGATT+TGG | + | chr8_1:29680295-29680314 | None:intergenic | 35.0% | |
| ! | TATTGGACCAAAGCACTAAT+AGG | + | chr8_1:29680447-29680466 | None:intergenic | 35.0% |
| TATCTTCGAAATTCTCAGGT+CGG | - | chr8_1:29680584-29680603 | Msa1188910:intron | 35.0% | |
| GACGAGATGACAATACTAAT+TGG | + | chr8_1:29680662-29680681 | None:intergenic | 35.0% | |
| GATGAATGGCTTAGTATGTT+TGG | - | chr8_1:29679430-29679449 | Msa1188910:three_prime_UTR | 35.0% | |
| AGGGATAAAGTATGAGTACA+AGG | - | chr8_1:29679483-29679502 | Msa1188910:three_prime_UTR | 35.0% | |
| ACTGGAATCTTCTTGTGAAT+TGG | + | chr8_1:29679553-29679572 | None:intergenic | 35.0% | |
| ATTCCAGTTCTTATCCATGA+GGG | - | chr8_1:29679565-29679584 | Msa1188910:three_prime_UTR | 35.0% | |
| GTATATTGATGAGGTTTGGA+AGG | - | chr8_1:29679621-29679640 | Msa1188910:CDS | 35.0% | |
| ! | AGAAAGCTCAAGCAAGATTT+TGG | - | chr8_1:29679677-29679696 | Msa1188910:CDS | 35.0% |
| ! | GAAAGCTCAAGCAAGATTTT+GGG | - | chr8_1:29679678-29679697 | Msa1188910:CDS | 35.0% |
| !! | GGCTGATTTTGTCAACAAAA+AGG | - | chr8_1:29679699-29679718 | Msa1188910:CDS | 35.0% |
| AAAGAGAGATGAGGTTGAAT+TGG | - | chr8_1:29680051-29680070 | Msa1188910:intron | 35.0% | |
| AAGGAATTAGAGAATGTGCT+TGG | - | chr8_1:29680100-29680119 | Msa1188910:intron | 35.0% | |
| TGTTACCACCAAAATAAGGT+TGG | + | chr8_1:29680129-29680148 | None:intergenic | 35.0% | |
| ! | CTTTGATCCCTTTTCATAGT+TGG | - | chr8_1:29680170-29680189 | Msa1188910:intron | 35.0% |
| !! | AGTGTGATAAGTTGATTGCT+TGG | - | chr8_1:29680236-29680255 | Msa1188910:intron | 35.0% |
| !! | GTGTGATAAGTTGATTGCTT+GGG | - | chr8_1:29680237-29680256 | Msa1188910:intron | 35.0% |
| TTTCTCATCAGCAACAGATT+TGG | + | chr8_1:29680295-29680314 | None:intergenic | 35.0% | |
| ! | TATTGGACCAAAGCACTAAT+AGG | + | chr8_1:29680447-29680466 | None:intergenic | 35.0% |
| TATCTTCGAAATTCTCAGGT+CGG | - | chr8_1:29680584-29680603 | Msa1188910:intron | 35.0% | |
| GACGAGATGACAATACTAAT+TGG | + | chr8_1:29680662-29680681 | None:intergenic | 35.0% | |
| TTACAATTCTCTAGGCTCTG+TGG | - | chr8_1:29679371-29679390 | Msa1188910:three_prime_UTR | 40.0% | |
| TCTGTGGTTGTCTTTGACAA+TGG | - | chr8_1:29679387-29679406 | Msa1188910:three_prime_UTR | 40.0% | |
| GTATGTTTGGTATGAGAGCA+AGG | - | chr8_1:29679443-29679462 | Msa1188910:three_prime_UTR | 40.0% | |
| TATGAGAGCAAGGATAGCAT+TGG | - | chr8_1:29679453-29679472 | Msa1188910:three_prime_UTR | 40.0% | |
| !! | AGGATAGCATTGGCTGAAAA+AGG | - | chr8_1:29679463-29679482 | Msa1188910:three_prime_UTR | 40.0% |
| !! | GGATAGCATTGGCTGAAAAA+GGG | - | chr8_1:29679464-29679483 | Msa1188910:three_prime_UTR | 40.0% |
| GATTCCAGTTCTTATCCATG+AGG | - | chr8_1:29679564-29679583 | Msa1188910:three_prime_UTR | 40.0% | |
| TTTCCCTCATGGATAAGAAC+TGG | + | chr8_1:29679571-29679590 | None:intergenic | 40.0% | |
| CACAAATTGGATTTCCCTCA+TGG | + | chr8_1:29679582-29679601 | None:intergenic | 40.0% | |
| TGATGAGGTTTGGAAGGATA+AGG | - | chr8_1:29679627-29679646 | Msa1188910:CDS | 40.0% | |
| TAAGGATCTGAGGGTAGAAA+TGG | + | chr8_1:29679655-29679674 | None:intergenic | 40.0% | |
| GCTTTCTGATAAGGATCTGA+GGG | + | chr8_1:29679664-29679683 | None:intergenic | 40.0% | |
| AGCTTTCTGATAAGGATCTG+AGG | + | chr8_1:29679665-29679684 | None:intergenic | 40.0% | |
| CTTGCTTGAGCTTTCTGATA+AGG | + | chr8_1:29679673-29679692 | None:intergenic | 40.0% | |
| ATACTCACATCTCACTAGGA+AGG | + | chr8_1:29679855-29679874 | None:intergenic | 40.0% | |
| TCCTAGTGAGATGTGAGTAT+AGG | - | chr8_1:29679855-29679874 | Msa1188910:CDS | 40.0% | |
| TCCTATACTCACATCTCACT+AGG | + | chr8_1:29679859-29679878 | None:intergenic | 40.0% | |
| !! | AAAATGCAGGTTGGTGATGT+TGG | - | chr8_1:29680010-29680029 | Msa1188910:intron | 40.0% |
| TGATGTTGGAGGAAGGATAT+GGG | - | chr8_1:29680024-29680043 | Msa1188910:intron | 40.0% | |
| TGAGGTTGAATTGGCAAAGA+AGG | - | chr8_1:29680060-29680079 | Msa1188910:intron | 40.0% | |
| ! | GCAAAGAAGGAGTTGATTGA+AGG | - | chr8_1:29680073-29680092 | Msa1188910:intron | 40.0% |
| ! | GGAGTTGATTGAAGGCTTAA+AGG | - | chr8_1:29680081-29680100 | Msa1188910:intron | 40.0% |
| !! | CTTGGAGACCAACCTTATTT+TGG | - | chr8_1:29680118-29680137 | Msa1188910:intron | 40.0% |
| CTATAGGAAGAGGTTTGAGT+TGG | - | chr8_1:29680338-29680357 | Msa1188910:CDS | 40.0% | |
| GGTTGTTCCTATTAGTGCTT+TGG | - | chr8_1:29680437-29680456 | Msa1188910:CDS | 40.0% | |
| TTACAATTCTCTAGGCTCTG+TGG | - | chr8_1:29679371-29679390 | Msa1188910:three_prime_UTR | 40.0% | |
| TCTGTGGTTGTCTTTGACAA+TGG | - | chr8_1:29679387-29679406 | Msa1188910:three_prime_UTR | 40.0% | |
| GTATGTTTGGTATGAGAGCA+AGG | - | chr8_1:29679443-29679462 | Msa1188910:three_prime_UTR | 40.0% | |
| TATGAGAGCAAGGATAGCAT+TGG | - | chr8_1:29679453-29679472 | Msa1188910:three_prime_UTR | 40.0% | |
| !! | AGGATAGCATTGGCTGAAAA+AGG | - | chr8_1:29679463-29679482 | Msa1188910:three_prime_UTR | 40.0% |
| !! | GGATAGCATTGGCTGAAAAA+GGG | - | chr8_1:29679464-29679483 | Msa1188910:three_prime_UTR | 40.0% |
| GATTCCAGTTCTTATCCATG+AGG | - | chr8_1:29679564-29679583 | Msa1188910:three_prime_UTR | 40.0% | |
| TTTCCCTCATGGATAAGAAC+TGG | + | chr8_1:29679571-29679590 | None:intergenic | 40.0% | |
| CACAAATTGGATTTCCCTCA+TGG | + | chr8_1:29679582-29679601 | None:intergenic | 40.0% | |
| TGATGAGGTTTGGAAGGATA+AGG | - | chr8_1:29679627-29679646 | Msa1188910:CDS | 40.0% | |
| TAAGGATCTGAGGGTAGAAA+TGG | + | chr8_1:29679655-29679674 | None:intergenic | 40.0% | |
| GCTTTCTGATAAGGATCTGA+GGG | + | chr8_1:29679664-29679683 | None:intergenic | 40.0% | |
| AGCTTTCTGATAAGGATCTG+AGG | + | chr8_1:29679665-29679684 | None:intergenic | 40.0% | |
| CTTGCTTGAGCTTTCTGATA+AGG | + | chr8_1:29679673-29679692 | None:intergenic | 40.0% | |
| ATACTCACATCTCACTAGGA+AGG | + | chr8_1:29679855-29679874 | None:intergenic | 40.0% | |
| TCCTAGTGAGATGTGAGTAT+AGG | - | chr8_1:29679855-29679874 | Msa1188910:CDS | 40.0% | |
| TCCTATACTCACATCTCACT+AGG | + | chr8_1:29679859-29679878 | None:intergenic | 40.0% | |
| !! | AAAATGCAGGTTGGTGATGT+TGG | - | chr8_1:29680010-29680029 | Msa1188910:intron | 40.0% |
| TGATGTTGGAGGAAGGATAT+GGG | - | chr8_1:29680024-29680043 | Msa1188910:intron | 40.0% | |
| TGAGGTTGAATTGGCAAAGA+AGG | - | chr8_1:29680060-29680079 | Msa1188910:intron | 40.0% | |
| ! | GCAAAGAAGGAGTTGATTGA+AGG | - | chr8_1:29680073-29680092 | Msa1188910:intron | 40.0% |
| ! | GGAGTTGATTGAAGGCTTAA+AGG | - | chr8_1:29680081-29680100 | Msa1188910:intron | 40.0% |
| !! | CTTGGAGACCAACCTTATTT+TGG | - | chr8_1:29680118-29680137 | Msa1188910:intron | 40.0% |
| CTATAGGAAGAGGTTTGAGT+TGG | - | chr8_1:29680338-29680357 | Msa1188910:CDS | 40.0% | |
| GGTTGTTCCTATTAGTGCTT+TGG | - | chr8_1:29680437-29680456 | Msa1188910:CDS | 40.0% | |
| GTTGTCTTTGACAATGGCAG+AGG | - | chr8_1:29679393-29679412 | Msa1188910:three_prime_UTR | 45.0% | |
| CACATCTCACTAGGAAGGAA+AGG | + | chr8_1:29679850-29679869 | None:intergenic | 45.0% | |
| GTGATGTTGGAGGAAGGATA+TGG | - | chr8_1:29680023-29680042 | Msa1188910:intron | 45.0% | |
| !!! | GGAGACCAACCTTATTTTGG+TGG | - | chr8_1:29680121-29680140 | Msa1188910:intron | 45.0% |
| GTTGTCTTTGACAATGGCAG+AGG | - | chr8_1:29679393-29679412 | Msa1188910:three_prime_UTR | 45.0% | |
| CACATCTCACTAGGAAGGAA+AGG | + | chr8_1:29679850-29679869 | None:intergenic | 45.0% | |
| GTGATGTTGGAGGAAGGATA+TGG | - | chr8_1:29680023-29680042 | Msa1188910:intron | 45.0% | |
| !!! | GGAGACCAACCTTATTTTGG+TGG | - | chr8_1:29680121-29680140 | Msa1188910:intron | 45.0% |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | - | chr8_1:29680013-29680032 | Msa1188910:intron | 50.0% |
| !! | AGGTTGGTGATGTTGGAGGA+AGG | - | chr8_1:29680017-29680036 | Msa1188910:intron | 50.0% |
| !! | ATGGGCTGGAAAGAGAGATG+AGG | - | chr8_1:29680042-29680061 | Msa1188910:intron | 50.0% |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | - | chr8_1:29680013-29680032 | Msa1188910:intron | 50.0% |
| !! | AGGTTGGTGATGTTGGAGGA+AGG | - | chr8_1:29680017-29680036 | Msa1188910:intron | 50.0% |
| !! | ATGGGCTGGAAAGAGAGATG+AGG | - | chr8_1:29680042-29680061 | Msa1188910:intron | 50.0% |
| GTTGGAGGAAGGATATGGGC+TGG | - | chr8_1:29680028-29680047 | Msa1188910:intron | 55.0% | |
| CTCAGGTCGGACGTCATGAT+CGG | - | chr8_1:29680597-29680616 | Msa1188910:intron | 55.0% | |
| TCAGGTCGGACGTCATGATC+GGG | - | chr8_1:29680598-29680617 | Msa1188910:intron | 55.0% | |
| GTTGGAGGAAGGATATGGGC+TGG | - | chr8_1:29680028-29680047 | Msa1188910:intron | 55.0% | |
| CTCAGGTCGGACGTCATGAT+CGG | - | chr8_1:29680597-29680616 | Msa1188910:intron | 55.0% | |
| TCAGGTCGGACGTCATGATC+GGG | - | chr8_1:29680598-29680617 | Msa1188910:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 29679273 | 29680698 | 29679273 | ID=Msa1188910;Name=Msa1188910 |
| chr8_1 | mRNA | 29679273 | 29680698 | 29679273 | ID=Msa1188910-mRNA-1;Parent=Msa1188910;Name=Msa1188910-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.33|0.66|0.5|0.33|3|320|232 |
| chr8_1 | exon | 29679273 | 29679952 | 29679273 | ID=Msa1188910-mRNA-1:exon:10430;Parent=Msa1188910-mRNA-1 |
| chr8_1 | exon | 29680251 | 29680586 | 29680251 | ID=Msa1188910-mRNA-1:exon:10429;Parent=Msa1188910-mRNA-1 |
| chr8_1 | exon | 29680696 | 29680698 | 29680696 | ID=Msa1188910-mRNA-1:exon:10428;Parent=Msa1188910-mRNA-1 |
| chr8_1 | CDS | 29680696 | 29680698 | 29680696 | ID=Msa1188910-mRNA-1:cds;Parent=Msa1188910-mRNA-1 |
| chr8_1 | CDS | 29680251 | 29680586 | 29680251 | ID=Msa1188910-mRNA-1:cds;Parent=Msa1188910-mRNA-1 |
| chr8_1 | CDS | 29679593 | 29679952 | 29679593 | ID=Msa1188910-mRNA-1:cds;Parent=Msa1188910-mRNA-1 |
| chr8_1 | three_prime_UTR | 29679273 | 29679592 | 29679273 | ID=Msa1188910-mRNA-1:three_prime_utr;Parent=Msa1188910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
