AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047630 MtrunA17_Chr4g0040481 90.805 87 5 1 3 89 341 424 4.49e-49 160
Msa0047630 MtrunA17_Chr2g0324891 65.116 86 25 3 6 86 337 422 2.90e-26 99.8
Msa0047630 MtrunA17_Chr4g0054981 61.538 52 20 0 35 86 497 548 1.50e-15 70.1
Msa0047630 MtrunA17_Chr5g0400241 54.762 42 19 0 39 80 490 531 4.70e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 163 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACATCACTTTACTATTT+TGG 0.121915 1_1:-80691089 Msa0047630:five_prime_UTR
GGCGGTGCCTTCAAGGATTT+TGG 0.156203 1_1:-80694251 Msa0047630:five_prime_UTR
TTGTCTTCTACTCTGAATTT+TGG 0.203668 1_1:-80691055 Msa0047630:five_prime_UTR
CACCTCAAGATCCTTCATTT+TGG 0.206831 1_1:-80693679 Msa0047630:five_prime_UTR
CCTTTCCGAAGGAAATTTAT+TGG 0.220345 1_1:-80695363 Msa0047630:five_prime_UTR
TGGTCAGCCAAACTTATATT+TGG 0.226106 1_1:+80690898 None:intergenic
TGTCAATCTTATCTTTAAAA+AGG 0.233079 1_1:+80691030 None:intergenic
TATGGGATTAGTAAATAAAA+TGG 0.301926 1_1:-80690074 Msa0047630:three_prime_UTR
ATGCCATGGGGTGGGATGCC+GGG 0.306670 1_1:+80690826 None:intergenic
TGGAGACATCTTACCGGATT+TGG 0.308487 1_1:-80695297 Msa0047630:five_prime_UTR
GGATGAGAAATCGTCGAATT+AGG 0.310005 1_1:+80690249 None:intergenic
GGCCGGATCATTGCGTTTAT+CGG 0.317082 1_1:+80691159 None:intergenic
TATGTACGATTGGTATAGTA+TGG 0.317826 1_1:-80690092 Msa0047630:three_prime_UTR
CCCATTTGATTATTATTAGA+AGG 0.319606 1_1:-80695528 Msa0047630:five_prime_UTR
AAACCCATGGTGGGTGCAGC+TGG 0.319978 1_1:+80693854 None:intergenic
TTATTCTCCAAATATAAGTT+TGG 0.331385 1_1:-80690905 Msa0047630:five_prime_UTR
AATCGTACATATATACAAAA+TGG 0.337228 1_1:+80690104 None:intergenic
ATGGGGACATCCTTCAAATA+TGG 0.339407 1_1:-80693771 Msa0047630:five_prime_UTR
AAAACTAATTAATCCTTTAC+CGG 0.340492 1_1:-80690296 Msa0047630:three_prime_UTR
ATGGGATTAGTAAATAAAAT+GGG 0.352145 1_1:-80690073 Msa0047630:three_prime_UTR
CATGCCATGGGGTGGGATGC+CGG 0.361244 1_1:+80690825 None:intergenic
AACTTCGACGACTTCTTTGT+TGG 0.363264 1_1:-80695332 Msa0047630:five_prime_UTR
AGATGCAATGCAACATCTAA+TGG 0.367911 1_1:+80690228 None:intergenic
ATACATGTAAGGGTCTAAAA+TGG 0.371409 1_1:+80693792 None:intergenic
TGGGGTGGGATGCCGGGGAT+TGG 0.376158 1_1:+80690832 None:intergenic
ACCTTCTAATAATAATCAAA+TGG 0.380751 1_1:+80695527 None:intergenic
ACAAATCTCCTGTGCAAGTC+TGG 0.392453 1_1:+80694304 None:intergenic
GAGAACGTGTGTTCAAATAA+TGG 0.401910 1_1:+80695667 None:intergenic
CCAGCACTTGATAGCGTAAT+GGG 0.402444 1_1:-80690373 Msa0047630:CDS
GAGGATAAAACAAGCTGTTC+GGG 0.406204 1_1:-80695152 Msa0047630:five_prime_UTR
GAGGAGGAGGAGGATGAGGG+GGG 0.410471 1_1:+80693831 None:intergenic
TTAAAAGATGCAGGTGGAAA+AGG 0.411700 1_1:-80695071 Msa0047630:five_prime_UTR
GATGAATTCTTCGGCGTCAC+TGG 0.421305 1_1:-80695219 Msa0047630:five_prime_UTR
TGTGCTATATTTATATATGT+TGG 0.422119 1_1:+80690978 None:intergenic
TGAGGATAAAACAAGCTGTT+CGG 0.423559 1_1:-80695153 Msa0047630:five_prime_UTR
GAGAGCATAGACGCAGCTAT+TGG 0.425120 1_1:-80690445 Msa0047630:CDS
TGTTCAAATAATGGAGAGTT+AGG 0.425347 1_1:+80695676 None:intergenic
ATAATCTCCAAAATCCTTGA+AGG 0.430397 1_1:+80694244 None:intergenic
CTCCGATAAACGCAATGATC+CGG 0.431873 1_1:-80691161 Msa0047630:five_prime_UTR
CATCTTACCGGATTTGGTAA+TGG 0.436295 1_1:-80695291 Msa0047630:five_prime_UTR
TAACATTGCTAGTCACCTTC+AGG 0.436461 1_1:-80694197 Msa0047630:intron
CCTTTACCGGGGAGCTAGCT+AGG 0.438569 1_1:-80690283 Msa0047630:three_prime_UTR
GAGAACTCAGCAAACATCTC+TGG 0.443524 1_1:+80695266 None:intergenic
ATAAGTTTGGCTGACCATAA+AGG 0.450481 1_1:-80690892 Msa0047630:five_prime_UTR
ACCACTGTTGTCAGAGGTGG+TGG 0.450953 1_1:+80691120 None:intergenic
TGGACAAGGCGGTGCCTTCA+AGG 0.452098 1_1:-80694258 Msa0047630:five_prime_UTR
TCTGGATCCATTACCAAATC+CGG 0.453183 1_1:+80695284 None:intergenic
GGTGGGAAACAATGTGTTCC+TGG 0.458402 1_1:+80691138 None:intergenic
ATGGTGGGTGCAGCTGGCCA+TGG 0.458606 1_1:+80693860 None:intergenic
GCTTTCCAATAAATTTCCTT+CGG 0.459139 1_1:+80695358 None:intergenic
ACAATTACAACGGGCGACTT+CGG 0.459712 1_1:-80695389 Msa0047630:five_prime_UTR
TCGAAGAAGTGACCGGGAGC+AGG 0.463586 1_1:+80690772 None:intergenic
CCTTCTAATAATAATCAAAT+GGG 0.463808 1_1:+80695528 None:intergenic
CATGAGAGTGGCTGCGGTGT+AGG 0.464099 1_1:+80693725 None:intergenic
AATCAAAGGAGACAAGTATA+TGG 0.464153 1_1:-80693914 Msa0047630:five_prime_UTR
GAAGGTGACTAGCAATGTTA+TGG 0.464906 1_1:+80694200 None:intergenic
GAATTCAAAGAAAGATTATG+AGG 0.466750 1_1:-80695171 Msa0047630:five_prime_UTR
TGCCATGGGGTGGGATGCCG+GGG 0.471359 1_1:+80690827 None:intergenic
AAGCAGCAAGTTGGAATCAA+AGG 0.471928 1_1:-80693928 Msa0047630:five_prime_UTR
GCTGAGTTCTCCGTTAGTTA+CGG 0.472120 1_1:-80695254 Msa0047630:five_prime_UTR
ATGGCCAGCTGCACCCACCA+TGG 0.477260 1_1:-80693858 Msa0047630:five_prime_UTR
TGTTTATTGTGCAGGTGGAT+TGG 0.477271 1_1:-80694330 Msa0047630:intron
GTTGCACTCAAGCTTAGAAA+TGG 0.477328 1_1:+80695606 None:intergenic
AGACAAGTATATGGTGGTGT+AGG 0.478471 1_1:-80693905 Msa0047630:five_prime_UTR
GACAAGTATATGGTGGTGTA+GGG 0.478876 1_1:-80693904 Msa0047630:five_prime_UTR
TGGCCAGCTGCACCCACCAT+GGG 0.485571 1_1:-80693857 Msa0047630:five_prime_UTR
CCTAGCTAGCTCCCCGGTAA+AGG 0.488512 1_1:+80690283 None:intergenic
CCATGGTTGCCACTACCACT+TGG 0.489750 1_1:-80690406 Msa0047630:CDS
AACATGCAGAGACCATCATT+TGG 0.489976 1_1:-80690859 Msa0047630:CDS
CGTCGATGGAGACATCTTAC+CGG 0.493741 1_1:-80695303 Msa0047630:five_prime_UTR
GATCTGCTTTACACATGCCA+TGG 0.496492 1_1:+80690812 None:intergenic
TCTTTGTTAGTGTTCCTCAA+TGG 0.497869 1_1:+80695455 None:intergenic
TCCAGCACTTGATAGCGTAA+TGG 0.499694 1_1:-80690374 Msa0047630:CDS
ATTAGCACCCTTCCTGCTCC+CGG 0.500715 1_1:-80690784 Msa0047630:CDS
GGGAGTACTACAATTACAAC+GGG 0.501212 1_1:-80695398 Msa0047630:five_prime_UTR
AGGATGTCCCCATACATGTA+AGG 0.503004 1_1:+80693781 None:intergenic
GAAGTGACCGGGAGCAGGAA+GGG 0.509953 1_1:+80690777 None:intergenic
CCAATAAATTTCCTTCGGAA+AGG 0.513295 1_1:+80695363 None:intergenic
TTGAGGAACACTAACAAAGA+TGG 0.514130 1_1:-80695452 Msa0047630:five_prime_UTR
CCCATTACGCTATCAAGTGC+TGG 0.514753 1_1:+80690373 None:intergenic
ATCTGCTTTACACATGCCAT+GGG 0.515933 1_1:+80690813 None:intergenic
TGATTCCTCGCCGTAACTAA+CGG 0.519226 1_1:+80695244 None:intergenic
TTTGTTGGCATCAACGTCGA+TGG 0.522723 1_1:-80695317 Msa0047630:five_prime_UTR
GAAGGATCTTGAGGTGGTGG+AGG 0.522935 1_1:+80693686 None:intergenic
GGAATCAGAGATGAATTCTT+CGG 0.526908 1_1:-80695228 Msa0047630:five_prime_UTR
AATGAAGGATCTTGAGGTGG+TGG 0.528793 1_1:+80693683 None:intergenic
GCTTTGAGTCCAAGTGGTAG+TGG 0.528879 1_1:+80690397 None:intergenic
AGATGGAAACCAAGAAGAGA+TGG 0.529997 1_1:-80695435 Msa0047630:five_prime_UTR
AAATGGTGCAATGGTGCCAT+AGG 0.534447 1_1:+80693809 None:intergenic
AAAGACTGGTCCATATTTGA+AGG 0.536097 1_1:+80693761 None:intergenic
GGAAACAATGTGTTCCTGGC+CGG 0.538523 1_1:+80691142 None:intergenic
TTTCTTCAAGTGCATGATGA+GGG 0.538544 1_1:+80690316 None:intergenic
ATGGTGGTGTAGGGGTGAAG+AGG 0.540082 1_1:-80693895 Msa0047630:five_prime_UTR
TGGTGGTGTAGGGGTGAAGA+GGG 0.540938 1_1:-80693894 Msa0047630:five_prime_UTR
TGGGAAGTCGAAGAAGTGAC+CGG 0.545060 1_1:+80690765 None:intergenic
TGCAATGGTGCCATAGGAGG+AGG 0.545767 1_1:+80693815 None:intergenic
AAAACAAGCTGTTCGGGTCA+AGG 0.545941 1_1:-80695146 Msa0047630:five_prime_UTR
AATCCATTGTTAAAAGATGC+AGG 0.548676 1_1:-80695080 Msa0047630:five_prime_UTR
GGGATTGGACATCCAAATGA+TGG 0.551089 1_1:+80690847 None:intergenic
CTACACCGCAGCCACTCTCA+TGG 0.554231 1_1:-80693724 Msa0047630:five_prime_UTR
AAGCTGTTCGGGTCAAGGCT+CGG 0.557290 1_1:-80695141 Msa0047630:five_prime_UTR
TGGTGCAATGGTGCCATAGG+AGG 0.557595 1_1:+80693812 None:intergenic
GCTTTACACATGCCATGGGG+TGG 0.557961 1_1:+80690817 None:intergenic
GGTGCCATAGGAGGAGGAGG+AGG 0.561800 1_1:+80693821 None:intergenic
TTGGCATTCTCACCACCAGC+AGG 0.563830 1_1:-80693660 Msa0047630:intron
ACTCAAGCTTAGAAATGGTA+GGG 0.565017 1_1:+80695611 None:intergenic
AAACTAATTAATCCTTTACC+GGG 0.572727 1_1:-80690295 Msa0047630:three_prime_UTR
CACTCAAGCTTAGAAATGGT+AGG 0.573776 1_1:+80695610 None:intergenic
CTTCAAGTGCATGATGAGGG+TGG 0.573822 1_1:+80690319 None:intergenic
GAAACTCAATATATAAAACT+AGG 0.576041 1_1:+80695550 None:intergenic
TGCCAAAATGAAGGATCTTG+AGG 0.576157 1_1:+80693677 None:intergenic
TCATTTGGATGTCCAATCCC+CGG 0.576190 1_1:-80690844 Msa0047630:CDS
CTTTACACATGCCATGGGGT+GGG 0.577896 1_1:+80690818 None:intergenic
ATCCCCGGCATCCCACCCCA+TGG 0.583757 1_1:-80690829 Msa0047630:CDS
GTGCAAGCTGTGGAACAGCT+AGG 0.587705 1_1:-80694283 Msa0047630:five_prime_UTR
GTGAAGCAGAAGCAGCAAGT+TGG 0.590428 1_1:-80693937 Msa0047630:five_prime_UTR
ATAAACGCAATGATCCGGCC+AGG 0.590506 1_1:-80691156 Msa0047630:five_prime_UTR
GGATGTCCCCATACATGTAA+GGG 0.590827 1_1:+80693782 None:intergenic
CCAAGTGGTAGTGGCAACCA+TGG 0.591902 1_1:+80690406 None:intergenic
AATGGTGCCATAGGAGGAGG+AGG 0.593332 1_1:+80693818 None:intergenic
GGTGTCCATGAGAGTGGCTG+CGG 0.595402 1_1:+80693719 None:intergenic
ATGTACGATTGGTATAGTAT+GGG 0.596341 1_1:-80690091 Msa0047630:three_prime_UTR
ATTGGACACCAGACTTGCAC+AGG 0.600253 1_1:-80694312 Msa0047630:five_prime_UTR
GAAGGTTGAGTACTTGAGTG+TGG 0.600374 1_1:-80695510 Msa0047630:five_prime_UTR
TTTAGACCCTTACATGTATG+GGG 0.601372 1_1:-80693788 Msa0047630:five_prime_UTR
TCACTTCTTCGACTTCCCAC+CGG 0.602135 1_1:-80690761 Msa0047630:intron
GACTTCGGTGACCTTTCCGA+AGG 0.603286 1_1:-80695374 Msa0047630:five_prime_UTR
TGGGATTAGTAAATAAAATG+GGG 0.607535 1_1:-80690072 Msa0047630:three_prime_UTR
GCCACTCTCATGGACACCAT+CGG 0.612134 1_1:-80693714 Msa0047630:five_prime_UTR
AGAAGTGACCGGGAGCAGGA+AGG 0.612201 1_1:+80690776 None:intergenic
AATGCTCAAGCATTTGCGCA+TGG 0.616694 1_1:+80690129 None:intergenic
GCCACATGTGCAGAAAAGAC+TGG 0.621691 1_1:+80693747 None:intergenic
AGCTGTGGAACAGCTAGGAG+TGG 0.623334 1_1:-80694278 Msa0047630:five_prime_UTR
AGAGTAGAAGACAACGTGCA+TGG 0.623986 1_1:+80691064 None:intergenic
AGAGGGAAGTGATCAGTCCA+TGG 0.624850 1_1:-80693877 Msa0047630:five_prime_UTR
GGCATGTGTAAAGCAGATCA+CGG 0.631742 1_1:-80690808 Msa0047630:CDS
GGGAAGTCGAAGAAGTGACC+GGG 0.633060 1_1:+80690766 None:intergenic
TGCTTGCAGTGTCACCATTG+AGG 0.634204 1_1:-80695469 Msa0047630:five_prime_UTR
CAGGAGATTTGTGCAAGCTG+TGG 0.634615 1_1:-80694293 Msa0047630:five_prime_UTR
ACAAGTATATGGTGGTGTAG+GGG 0.636855 1_1:-80693903 Msa0047630:five_prime_UTR
TGGTGAGAATGCCAAAATGA+AGG 0.637260 1_1:+80693668 None:intergenic
ACCGATGGTGTCCATGAGAG+TGG 0.639166 1_1:+80693713 None:intergenic
GTTACCACTGTTGTCAGAGG+TGG 0.641294 1_1:+80691117 None:intergenic
CAAAGGAGACAAGTATATGG+TGG 0.641945 1_1:-80693911 Msa0047630:five_prime_UTR
TTGAAACCTAGCTAGCTCCC+CGG 0.643660 1_1:+80690277 None:intergenic
TCAAGCGAAGAGAAAAGTCA+AGG 0.644275 1_1:-80695018 Msa0047630:intron
ATAGTTACCACTGTTGTCAG+AGG 0.658785 1_1:+80691114 None:intergenic
GGAACAGCTAGGAGTGGACA+AGG 0.659903 1_1:-80694272 Msa0047630:five_prime_UTR
AACTAATTAATCCTTTACCG+GGG 0.665216 1_1:-80690294 Msa0047630:three_prime_UTR
TAGAGAGAGCTACCTGCTGG+TGG 0.667063 1_1:+80693648 None:intergenic
GGGGAGTACTACAATTACAA+CGG 0.686337 1_1:-80695399 Msa0047630:five_prime_UTR
GGTGGTGGAGGAGCTACCGA+TGG 0.688749 1_1:+80693698 None:intergenic
GAGTAAAAGAGATGAATCTG+TGG 0.689938 1_1:-80695108 Msa0047630:five_prime_UTR
GCTGGAGCTTTGAGTCCAAG+TGG 0.690127 1_1:+80690391 None:intergenic
AAGGGTCTAAAATGGTGCAA+TGG 0.690674 1_1:+80693800 None:intergenic
GTTCTCCGTTAGTTACGGCG+AGG 0.691247 1_1:-80695249 Msa0047630:five_prime_UTR
ATGGGTGAACTACAAAGACA+AGG 0.697859 1_1:-80690355 Msa0047630:CDS
CCACTGTTGTCAGAGGTGGT+GGG 0.703169 1_1:+80691121 None:intergenic
CAAAATGAAGGATCTTGAGG+TGG 0.718294 1_1:+80693680 None:intergenic
CCCACCACCTCTGACAACAG+TGG 0.721504 1_1:-80691121 Msa0047630:five_prime_UTR
CCATTGTTAAAAGATGCAGG+TGG 0.735818 1_1:-80695077 Msa0047630:five_prime_UTR
TCTGCTTTACACATGCCATG+GGG 0.759671 1_1:+80690814 None:intergenic
ACAGCTAGGAGTGGACAAGG+CGG 0.769326 1_1:-80694269 Msa0047630:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAGCATTTTTTTTT+CGG - chr1_1:80691100-80691119 Msa0047630:five_prime_UTR 10.0%
!!! CTAATAATTAAGATTTTTTT+TGG - chr1_1:80692190-80692209 Msa0047630:intron 10.0%
!! ATAAAAACAAATTATTGTTT+AGG - chr1_1:80692296-80692315 Msa0047630:intron 10.0%
!! AAAAAAATTATATATGAGAT+CGG - chr1_1:80692351-80692370 Msa0047630:intron 10.0%
!!! TCTCTTTTAATATTTTTTTT+GGG + chr1_1:80692466-80692485 None:intergenic 10.0%
!!! TTCTCTTTTAATATTTTTTT+TGG + chr1_1:80692467-80692486 None:intergenic 10.0%
!! TCCAAATAATATTTATTTAA+GGG - chr1_1:80692700-80692719 Msa0047630:intron 10.0%
!! TAATTTGATATATAATTAGA+CGG - chr1_1:80693239-80693258 Msa0047630:intron 10.0%
!! ATAATAACTAAATATCATTT+GGG + chr1_1:80694015-80694034 None:intergenic 10.0%
!! TATAATAACTAAATATCATT+TGG + chr1_1:80694016-80694035 None:intergenic 10.0%
!! TTTGTCATATATTATATATA+AGG - chr1_1:80694177-80694196 Msa0047630:intron 10.0%
!!! CAAAAAAAAAAATTTTTTGA+GGG + chr1_1:80694325-80694344 None:intergenic 10.0%
!!! TCAAAAAAAAAAATTTTTTG+AGG + chr1_1:80694326-80694345 None:intergenic 10.0%
!! TTACTTATATATAAATTGTG+AGG + chr1_1:80691202-80691221 None:intergenic 15.0%
!! TACTGCTATTATTATTAAAT+AGG - chr1_1:80691222-80691241 Msa0047630:intron 15.0%
!! TATACAATGATAGATATATA+GGG + chr1_1:80692164-80692183 None:intergenic 15.0%
!!! TAGGAAAATATACAATTTTT+AGG - chr1_1:80692387-80692406 Msa0047630:intron 15.0%
!! GTCCAAATAATATTTATTTA+AGG - chr1_1:80692699-80692718 Msa0047630:intron 15.0%
!! CCAAATAATATTTATTTAAG+GGG - chr1_1:80692701-80692720 Msa0047630:intron 15.0%
!! CAAATAATATTTATTTAAGG+GGG - chr1_1:80692702-80692721 Msa0047630:intron 15.0%
!! AAATAATATTTATTTAAGGG+GGG - chr1_1:80692703-80692722 Msa0047630:intron 15.0%
!!! TGGATTTATTAAGATTTTAA+AGG - chr1_1:80692875-80692894 Msa0047630:intron 15.0%
!!! AATTGATGTATATATCTTTT+TGG + chr1_1:80692998-80693017 None:intergenic 15.0%
!! AAAAAGATATATACATCAAT+TGG - chr1_1:80692997-80693016 Msa0047630:intron 15.0%
!! TAAAATCTAAATAAATCTTG+TGG + chr1_1:80693590-80693609 None:intergenic 15.0%
!! TTTATTATAAAAAAGTTTGG+TGG + chr1_1:80693632-80693651 None:intergenic 15.0%
!! AACAAATGGTATATAAAAAT+TGG + chr1_1:80693743-80693762 None:intergenic 15.0%
!!! TTGTTTTAAAATCTTTTTCT+AGG + chr1_1:80694241-80694260 None:intergenic 15.0%
!! TTGTTATAAATAAAAATTCG+AGG - chr1_1:80694446-80694465 Msa0047630:intron 15.0%
!!! ATGTGAAACTTTTTAATATA+TGG + chr1_1:80695105-80695124 None:intergenic 15.0%
!!! ATAATAAGATAGTTTTGTGA+AGG + chr1_1:80690126-80690145 None:intergenic 20.0%
!!! ACTAGGTGAATTATTATTTT+TGG + chr1_1:80690198-80690217 None:intergenic 20.0%
!! GAAACTCAATATATAAAACT+AGG + chr1_1:80690215-80690234 None:intergenic 20.0%
!! CCTTCTAATAATAATCAAAT+GGG + chr1_1:80690237-80690256 None:intergenic 20.0%
!! ACCTTCTAATAATAATCAAA+TGG + chr1_1:80690238-80690257 None:intergenic 20.0%
!! TATTAAAAAAATGTTAGCAG+TGG - chr1_1:80691064-80691083 Msa0047630:five_prime_UTR 20.0%
!! TGTTAACAATTCAAATTTAC+CGG - chr1_1:80691126-80691145 Msa0047630:five_prime_UTR 20.0%
!! ATATAAATTGTGAGGATATT+TGG + chr1_1:80691194-80691213 None:intergenic 20.0%
!!! TTTTGTTATTGCAGAAATAT+AGG - chr1_1:80691777-80691796 Msa0047630:intron 20.0%
!! CTATACAATGATAGATATAT+AGG + chr1_1:80692165-80692184 None:intergenic 20.0%
!!! ACGATTAAGATTTTAAACTT+TGG - chr1_1:80692223-80692242 Msa0047630:intron 20.0%
!! GTACAAACTGAAATAATTAA+GGG + chr1_1:80692259-80692278 None:intergenic 20.0%
!! AGTACAAACTGAAATAATTA+AGG + chr1_1:80692260-80692279 None:intergenic 20.0%
!!! GAAAATATACAATTTTTAGG+AGG - chr1_1:80692390-80692409 Msa0047630:intron 20.0%
!!! TATTAAGTCACATCAATTTT+TGG + chr1_1:80692601-80692620 None:intergenic 20.0%
!! CCCCTTAAATAAATATTATT+TGG + chr1_1:80692704-80692723 None:intergenic 20.0%
!!! AAGATTTTAAAAGACTTTGT+TGG - chr1_1:80692774-80692793 Msa0047630:intron 20.0%
!!! GAATTTTCAAGATTTTAAAG+AGG - chr1_1:80692905-80692924 Msa0047630:intron 20.0%
!!! GAAAATTAGAGAGATTTTAA+TGG + chr1_1:80693470-80693489 None:intergenic 20.0%
!!! TTTTGAATATAACGAACAAA+TGG + chr1_1:80693757-80693776 None:intergenic 20.0%
!!! TTTGTCGACTTTTATATTTT+AGG - chr1_1:80693849-80693868 Msa0047630:five_prime_UTR 20.0%
!!! ATTACATCACTTTACTATTT+TGG - chr1_1:80694673-80694692 Msa0047630:intron 20.0%
!!! TGTCAATCTTATCTTTAAAA+AGG + chr1_1:80694735-80694754 None:intergenic 20.0%
!! TGTGCTATATTTATATATGT+TGG + chr1_1:80694787-80694806 None:intergenic 20.0%
!! TTATTCTCCAAATATAAGTT+TGG - chr1_1:80694857-80694876 Msa0047630:intron 20.0%
!!! TGTTATGTTATTTTCCTTTA+TGG + chr1_1:80694887-80694906 None:intergenic 20.0%
!!! AATTCTCTTTATTTAGTTTC+CGG - chr1_1:80695079-80695098 Msa0047630:five_prime_UTR 20.0%
!!! TTTTAGGTGTTTTTATATTG+GGG + chr1_1:80695211-80695230 None:intergenic 20.0%
!!! CTTTTAGGTGTTTTTATATT+GGG + chr1_1:80695212-80695231 None:intergenic 20.0%
!! AAAACTAATTAATCCTTTAC+CGG - chr1_1:80695466-80695485 Msa0047630:five_prime_UTR 20.0%
!!! TCATTTTTTTTCCTTTCATT+TGG + chr1_1:80695608-80695627 None:intergenic 20.0%
!! AATCGTACATATATACAAAA+TGG + chr1_1:80695661-80695680 None:intergenic 20.0%
!!! ATTTTGTATATATGTACGAT+TGG - chr1_1:80695660-80695679 Msa0047630:five_prime_UTR 20.0%
!!! TATGGGATTAGTAAATAAAA+TGG - chr1_1:80695688-80695707 Msa0047630:five_prime_UTR 20.0%
!!! ATGGGATTAGTAAATAAAAT+GGG - chr1_1:80695689-80695708 Msa0047630:five_prime_UTR 20.0%
! CCCATTTGATTATTATTAGA+AGG - chr1_1:80690234-80690253 Msa0047630:three_prime_UTR 25.0%
! GAATTCAAAGAAAGATTATG+AGG - chr1_1:80690591-80690610 Msa0047630:intron 25.0%
! AGTCAAGGTATACTTAAATA+AGG - chr1_1:80690759-80690778 Msa0047630:intron 25.0%
! CTAAGTGGTTTATCTTAATT+TGG - chr1_1:80690804-80690823 Msa0047630:CDS 25.0%
! AATTTGCATATTACATGTCA+TGG - chr1_1:80691311-80691330 Msa0047630:intron 25.0%
! TTCAAGCATATAGAAGAAAA+AGG - chr1_1:80691599-80691618 Msa0047630:intron 25.0%
!!! CACTATTTATCAAGTTTTGA+TGG - chr1_1:80691713-80691732 Msa0047630:intron 25.0%
! TGATAGATATATAGGGAATT+TGG + chr1_1:80692157-80692176 None:intergenic 25.0%
!! TTTTTATATATGAAACCAGC+GGG + chr1_1:80692283-80692302 None:intergenic 25.0%
!! GTTTTTATATATGAAACCAG+CGG + chr1_1:80692284-80692303 None:intergenic 25.0%
!!! GTGCTCAAATATTGTTATTT+GGG + chr1_1:80692435-80692454 None:intergenic 25.0%
!! TGTGCTCAAATATTGTTATT+TGG + chr1_1:80692436-80692455 None:intergenic 25.0%
!! GTATTGGATTGAGATTTTAA+AGG - chr1_1:80692727-80692746 Msa0047630:intron 25.0%
!! TTCTTGATGCAAGATTTTAA+TGG - chr1_1:80692855-80692874 Msa0047630:intron 25.0%
! AAAAAAATATGCACTTGTCA+TGG - chr1_1:80693331-80693350 Msa0047630:intron 25.0%
!!! GATTTTAATGGATTCATTTG+TGG + chr1_1:80693458-80693477 None:intergenic 25.0%
! TTAAATACAACAAAATCCGT+TGG + chr1_1:80693539-80693558 None:intergenic 25.0%
! AACAAGGATTCAATTATATG+TGG + chr1_1:80694302-80694321 None:intergenic 25.0%
!!! AAAAATTTTTTGAGGGAACA+AGG + chr1_1:80694318-80694337 None:intergenic 25.0%
!! GAAACTTTTTAATATATGGC+CGG + chr1_1:80695101-80695120 None:intergenic 25.0%
!!! GCTTTTAGGTGTTTTTATAT+TGG + chr1_1:80695213-80695232 None:intergenic 25.0%
! AAACTAATTAATCCTTTACC+GGG - chr1_1:80695467-80695486 Msa0047630:five_prime_UTR 25.0%
!! TGGGATTAGTAAATAAAATG+GGG - chr1_1:80695690-80695709 Msa0047630:five_prime_UTR 25.0%
! TGTTCAAATAATGGAGAGTT+AGG + chr1_1:80690089-80690108 None:intergenic 30.0%
!! TTTTGGTTGCACATTAGAAA+TGG + chr1_1:80690181-80690200 None:intergenic 30.0%
GCTTTCCAATAAATTTCCTT+CGG + chr1_1:80690407-80690426 None:intergenic 30.0%
AATCCATTGTTAAAAGATGC+AGG - chr1_1:80690682-80690701 Msa0047630:intron 30.0%
!!! AGAGTTTTATTCTTGCTAAG+TGG - chr1_1:80690789-80690808 Msa0047630:CDS 30.0%
!!! CAGTACTAACTTTTTAGCTA+AGG - chr1_1:80690862-80690881 Msa0047630:exon 30.0%
! CTGTCTCTATAATTTGTCAA+GGG + chr1_1:80690913-80690932 None:intergenic 30.0%
! TCTGTCTCTATAATTTGTCA+AGG + chr1_1:80690914-80690933 None:intergenic 30.0%
TTTATAGTGCGTTGTATGTT+TGG - chr1_1:80690987-80691006 Msa0047630:five_prime_UTR 30.0%
CCTAATTACGATGAATATAC+CGG + chr1_1:80691148-80691167 None:intergenic 30.0%
AATTAGTGTGTTTATTGTGC+AGG - chr1_1:80691424-80691443 Msa0047630:intron 30.0%
ATAATCTCCAAAATCCTTGA+AGG + chr1_1:80691521-80691540 None:intergenic 30.0%
!! TTCAAGGATTTTGGAGATTA+TGG - chr1_1:80691520-80691539 Msa0047630:intron 30.0%
TGAAATTCATATGTACCTGA+AGG + chr1_1:80691583-80691602 None:intergenic 30.0%
AATCAAAGGAGACAAGTATA+TGG - chr1_1:80691848-80691867 Msa0047630:intron 30.0%
ATACATGTAAGGGTCTAAAA+TGG + chr1_1:80691973-80691992 None:intergenic 30.0%
! ATTTTAGACCCTTACATGTA+TGG - chr1_1:80691972-80691991 Msa0047630:intron 30.0%
! TTTTAGACCCTTACATGTAT+GGG - chr1_1:80691973-80691992 Msa0047630:intron 30.0%
!! TAAGTCACATCAATTTTTGG+TGG + chr1_1:80692598-80692617 None:intergenic 30.0%
TTACAGTTATGAAGATTTCG+AGG - chr1_1:80693288-80693307 Msa0047630:intron 30.0%
GGAACTTATAAAATGTCTCT+TGG + chr1_1:80693497-80693516 None:intergenic 30.0%
AAATCCCAATTGAATACCAA+CGG - chr1_1:80693520-80693539 Msa0047630:intron 30.0%
AAATCCGTTGGTATTCAATT+GGG + chr1_1:80693527-80693546 None:intergenic 30.0%
AAAATCCGTTGGTATTCAAT+TGG + chr1_1:80693528-80693547 None:intergenic 30.0%
GTATTGGATTGTGATTTCAA+AGG + chr1_1:80693670-80693689 None:intergenic 30.0%
AAATTAGAGAAAGTCTTTCG+TGG + chr1_1:80693710-80693729 None:intergenic 30.0%
AGGATTCAATTATATGTGGT+TGG + chr1_1:80694298-80694317 None:intergenic 30.0%
! TTGTCTTCTACTCTGAATTT+TGG - chr1_1:80694707-80694726 Msa0047630:intron 30.0%
ACATTATATGAGAGACGATA+AGG - chr1_1:80695121-80695140 Msa0047630:five_prime_UTR 30.0%
CATTATATGAGAGACGATAA+GGG - chr1_1:80695122-80695141 Msa0047630:five_prime_UTR 30.0%
! TTGAAATCTATGGAGCTTTT+AGG + chr1_1:80695227-80695246 None:intergenic 30.0%
TAAAAGCTCCATAGATTTCA+AGG - chr1_1:80695226-80695245 Msa0047630:five_prime_UTR 30.0%
! GAGATGTTTTATCAAAACCA+TGG - chr1_1:80695339-80695358 Msa0047630:five_prime_UTR 30.0%
AACTAATTAATCCTTTACCG+GGG - chr1_1:80695468-80695487 Msa0047630:five_prime_UTR 30.0%
TATGTACGATTGGTATAGTA+TGG - chr1_1:80695670-80695689 Msa0047630:five_prime_UTR 30.0%
ATGTACGATTGGTATAGTAT+GGG - chr1_1:80695671-80695690 Msa0047630:five_prime_UTR 30.0%
GAGAACGTGTGTTCAAATAA+TGG + chr1_1:80690098-80690117 None:intergenic 35.0%
ACTCAAGCTTAGAAATGGTA+GGG + chr1_1:80690154-80690173 None:intergenic 35.0%
TCTTTGTTAGTGTTCCTCAA+TGG + chr1_1:80690310-80690329 None:intergenic 35.0%
TTGAGGAACACTAACAAAGA+TGG - chr1_1:80690310-80690329 Msa0047630:exon 35.0%
AAAAACTCTCCATCTCTTCT+TGG + chr1_1:80690339-80690358 None:intergenic 35.0%
CCAATAAATTTCCTTCGGAA+AGG + chr1_1:80690402-80690421 None:intergenic 35.0%
CCTTTCCGAAGGAAATTTAT+TGG - chr1_1:80690399-80690418 Msa0047630:CDS 35.0%
GGAATCAGAGATGAATTCTT+CGG - chr1_1:80690534-80690553 Msa0047630:intron 35.0%
TGAGGATAAAACAAGCTGTT+CGG - chr1_1:80690609-80690628 Msa0047630:intron 35.0%
GAGTAAAAGAGATGAATCTG+TGG - chr1_1:80690654-80690673 Msa0047630:intron 35.0%
TTAAAAGATGCAGGTGGAAA+AGG - chr1_1:80690691-80690710 Msa0047630:intron 35.0%
CCGGTATATTCATCGTAATT+AGG - chr1_1:80691145-80691164 Msa0047630:five_prime_UTR 35.0%
TTTAGACCCTTACATGTATG+GGG - chr1_1:80691974-80691993 Msa0047630:intron 35.0%
! AAAGACTGGTCCATATTTGA+AGG + chr1_1:80692004-80692023 None:intergenic 35.0%
!!! AATTTGGCTGCTATTTTCAG+TGG + chr1_1:80692141-80692160 None:intergenic 35.0%
!! TTTTAGGAGGAACACTTACT+TGG - chr1_1:80692403-80692422 Msa0047630:intron 35.0%
TTTAGGAGGAACACTTACTT+GGG - chr1_1:80692404-80692423 Msa0047630:intron 35.0%
ACAACACATGGTAATATGCA+AGG - chr1_1:80692550-80692569 Msa0047630:intron 35.0%
! TTTATTTAAGGGGGGTGTAT+TGG - chr1_1:80692711-80692730 Msa0047630:intron 35.0%
!! TGTTGGATGTATTGACTTTG+TGG - chr1_1:80692791-80692810 Msa0047630:intron 35.0%
!! GTTGGATGTATTGACTTTGT+GGG - chr1_1:80692792-80692811 Msa0047630:intron 35.0%
ATGAACGTATAGACTGTTAG+AGG - chr1_1:80693188-80693207 Msa0047630:intron 35.0%
AAGATTTCGAGGATCATGTT+TGG - chr1_1:80693299-80693318 Msa0047630:intron 35.0%
AAGAGTTTGTGTGAGATTGT+TGG - chr1_1:80693393-80693412 Msa0047630:intron 35.0%
GGTATTCAATTGGGATTTCT+AGG + chr1_1:80693518-80693537 None:intergenic 35.0%
TCGATATGTACAAGTACGTT+TGG + chr1_1:80694103-80694122 None:intergenic 35.0%
!!! GTTCTTCTTCTTTTTTGACG+AGG + chr1_1:80694351-80694370 None:intergenic 35.0%
TGGTCAGCCAAACTTATATT+TGG + chr1_1:80694867-80694886 None:intergenic 35.0%
ATAAGTTTGGCTGACCATAA+AGG - chr1_1:80694870-80694889 Msa0047630:intron 35.0%
! GATAAGGGCATGTGTTTATA+AGG - chr1_1:80695137-80695156 Msa0047630:five_prime_UTR 35.0%
TACTCATGCCTTGAAATCTA+TGG + chr1_1:80695237-80695256 None:intergenic 35.0%
TTTCTTCAAGTGCATGATGA+GGG + chr1_1:80695449-80695468 None:intergenic 35.0%
! TTTTCTTCAAGTGCATGATG+AGG + chr1_1:80695450-80695469 None:intergenic 35.0%
AGATGCAATGCAACATCTAA+TGG + chr1_1:80695537-80695556 None:intergenic 35.0%
! GCTTTTAACAGCCAAATGAA+AGG - chr1_1:80695594-80695613 Msa0047630:five_prime_UTR 35.0%
CACTCAAGCTTAGAAATGGT+AGG + chr1_1:80690155-80690174 None:intergenic 40.0%
GTTGCACTCAAGCTTAGAAA+TGG + chr1_1:80690159-80690178 None:intergenic 40.0%
AGATGGAAACCAAGAAGAGA+TGG - chr1_1:80690327-80690346 Msa0047630:CDS 40.0%
!! AGAGATGGAGAGTTTTTCGA+TGG - chr1_1:80690342-80690361 Msa0047630:CDS 40.0%
!! GAGATGGAGAGTTTTTCGAT+GGG - chr1_1:80690343-80690362 Msa0047630:CDS 40.0%
!! AGATGGAGAGTTTTTCGATG+GGG - chr1_1:80690344-80690363 Msa0047630:CDS 40.0%
!! GGGGAGTACTACAATTACAA+CGG - chr1_1:80690363-80690382 Msa0047630:CDS 40.0%
!! GGGAGTACTACAATTACAAC+GGG - chr1_1:80690364-80690383 Msa0047630:CDS 40.0%
AACTTCGACGACTTCTTTGT+TGG - chr1_1:80690430-80690449 Msa0047630:CDS 40.0%
! CATCTTACCGGATTTGGTAA+TGG - chr1_1:80690471-80690490 Msa0047630:intron 40.0%
TCTGGATCCATTACCAAATC+CGG + chr1_1:80690481-80690500 None:intergenic 40.0%
GAGGATAAAACAAGCTGTTC+GGG - chr1_1:80690610-80690629 Msa0047630:intron 40.0%
! CCACCTGCATCTTTTAACAA+TGG + chr1_1:80690688-80690707 None:intergenic 40.0%
CCATTGTTAAAAGATGCAGG+TGG - chr1_1:80690685-80690704 Msa0047630:intron 40.0%
! TTGACTTTTCTCTTCGCTTG+AGG + chr1_1:80690745-80690764 None:intergenic 40.0%
TCAAGCGAAGAGAAAAGTCA+AGG - chr1_1:80690744-80690763 Msa0047630:intron 40.0%
GCAACTGTTCAAAATTTCGC+TGG - chr1_1:80690951-80690970 Msa0047630:five_prime_UTR 40.0%
TAGGATCTTCATCTCTAACG+AGG - chr1_1:80691164-80691183 Msa0047630:five_prime_UTR 40.0%
!! AGTGTCTCGTGCACTTTTTA+AGG + chr1_1:80691384-80691403 None:intergenic 40.0%
TAGTGTGTTTATTGTGCAGG+TGG - chr1_1:80691427-80691446 Msa0047630:intron 40.0%
TGTTTATTGTGCAGGTGGAT+TGG - chr1_1:80691432-80691451 Msa0047630:intron 40.0%
GAAGGTGACTAGCAATGTTA+TGG + chr1_1:80691565-80691584 None:intergenic 40.0%
TAACATTGCTAGTCACCTTC+AGG - chr1_1:80691565-80691584 Msa0047630:intron 40.0%
GTACTCGTACGATGTCTTTA+TGG - chr1_1:80691666-80691685 Msa0047630:intron 40.0%
! AAGCAGCAAGTTGGAATCAA+AGG - chr1_1:80691834-80691853 Msa0047630:intron 40.0%
CAAAGGAGACAAGTATATGG+TGG - chr1_1:80691851-80691870 Msa0047630:intron 40.0%
! AGACAAGTATATGGTGGTGT+AGG - chr1_1:80691857-80691876 Msa0047630:intron 40.0%
! GACAAGTATATGGTGGTGTA+GGG - chr1_1:80691858-80691877 Msa0047630:intron 40.0%
! ACAAGTATATGGTGGTGTAG+GGG - chr1_1:80691859-80691878 Msa0047630:intron 40.0%
! AAGGGTCTAAAATGGTGCAA+TGG + chr1_1:80691965-80691984 None:intergenic 40.0%
ATGGGGACATCCTTCAAATA+TGG - chr1_1:80691991-80692010 Msa0047630:intron 40.0%
CAAAATGAAGGATCTTGAGG+TGG + chr1_1:80692085-80692104 None:intergenic 40.0%
! CACCTCAAGATCCTTCATTT+TGG - chr1_1:80692083-80692102 Msa0047630:intron 40.0%
TGCCAAAATGAAGGATCTTG+AGG + chr1_1:80692088-80692107 None:intergenic 40.0%
TGGTGAGAATGCCAAAATGA+AGG + chr1_1:80692097-80692116 None:intergenic 40.0%
!! GATCGGAGAGAGTATTTGAT+AGG - chr1_1:80692368-80692387 Msa0047630:intron 40.0%
ATGGTAATATGCAAGGTCCA+GGG - chr1_1:80692557-80692576 Msa0047630:intron 40.0%
!!! CATCAATTTTTGGTGGTGTC+CGG + chr1_1:80692591-80692610 None:intergenic 40.0%
TGGCAGAACAGAAAAAAGTC+TGG - chr1_1:80693351-80693370 Msa0047630:intron 40.0%
GGCAGAACAGAAAAAAGTCT+GGG - chr1_1:80693352-80693371 Msa0047630:intron 40.0%
ATAGTTACCACTGTTGTCAG+AGG + chr1_1:80694651-80694670 None:intergenic 40.0%
AACATGCAGAGACCATCATT+TGG - chr1_1:80694903-80694922 Msa0047630:intron 40.0%
ATCTGCTTTACACATGCCAT+GGG + chr1_1:80694952-80694971 None:intergenic 40.0%
! AAGGGCATGTGTTTATAAGG+TGG - chr1_1:80695140-80695159 Msa0047630:five_prime_UTR 40.0%
AGGGCATGTGTTTATAAGGT+GGG - chr1_1:80695141-80695160 Msa0047630:five_prime_UTR 40.0%
ATGGGTGAACTACAAAGACA+AGG - chr1_1:80695407-80695426 Msa0047630:five_prime_UTR 40.0%
GGATGAGAAATCGTCGAATT+AGG + chr1_1:80695516-80695535 None:intergenic 40.0%
GAAGGTTGAGTACTTGAGTG+TGG - chr1_1:80690252-80690271 Msa0047630:three_prime_UTR 45.0%
ACAATTACAACGGGCGACTT+CGG - chr1_1:80690373-80690392 Msa0047630:CDS 45.0%
TTTGTTGGCATCAACGTCGA+TGG - chr1_1:80690445-80690464 Msa0047630:CDS 45.0%
TGGAGACATCTTACCGGATT+TGG - chr1_1:80690465-80690484 Msa0047630:intron 45.0%
GAGAACTCAGCAAACATCTC+TGG + chr1_1:80690499-80690518 None:intergenic 45.0%
GCTGAGTTCTCCGTTAGTTA+CGG - chr1_1:80690508-80690527 Msa0047630:intron 45.0%
TGATTCCTCGCCGTAACTAA+CGG + chr1_1:80690521-80690540 None:intergenic 45.0%
AAAACAAGCTGTTCGGGTCA+AGG - chr1_1:80690616-80690635 Msa0047630:intron 45.0%
ACAAATCTCCTGTGCAAGTC+TGG + chr1_1:80691461-80691480 None:intergenic 45.0%
!! AAATGGTGCAATGGTGCCAT+AGG + chr1_1:80691956-80691975 None:intergenic 45.0%
GGATGTCCCCATACATGTAA+GGG + chr1_1:80691983-80692002 None:intergenic 45.0%
AGGATGTCCCCATACATGTA+AGG + chr1_1:80691984-80692003 None:intergenic 45.0%
! ACCAGTCTTTTCTGCACATG+TGG - chr1_1:80692014-80692033 Msa0047630:intron 45.0%
AATGAAGGATCTTGAGGTGG+TGG + chr1_1:80692082-80692101 None:intergenic 45.0%
ATTTCAGTTTGTACTCCCGC+TGG - chr1_1:80692265-80692284 Msa0047630:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - chr1_1:80692527-80692546 Msa0047630:intron 45.0%
CATGGTAATATGCAAGGTCC+AGG - chr1_1:80692556-80692575 Msa0047630:intron 45.0%
ACAATCCAATACAACCCCCA+AGG - chr1_1:80693678-80693697 Msa0047630:five_prime_UTR 45.0%
TCTTTCGTGGACACAACCTT+GGG + chr1_1:80693697-80693716 None:intergenic 45.0%
CTCCGATAAACGCAATGATC+CGG - chr1_1:80694601-80694620 Msa0047630:intron 45.0%
AGAGTAGAAGACAACGTGCA+TGG + chr1_1:80694701-80694720 None:intergenic 45.0%
GGGATTGGACATCCAAATGA+TGG + chr1_1:80694918-80694937 None:intergenic 45.0%
TCATTTGGATGTCCAATCCC+CGG - chr1_1:80694918-80694937 Msa0047630:intron 45.0%
TCTGCTTTACACATGCCATG+GGG + chr1_1:80694951-80694970 None:intergenic 45.0%
GATCTGCTTTACACATGCCA+TGG + chr1_1:80694953-80694972 None:intergenic 45.0%
GGCATGTGTAAAGCAGATCA+CGG - chr1_1:80694954-80694973 Msa0047630:intron 45.0%
!! GAAGGAAATTCAGTACCGGT+GGG + chr1_1:80695019-80695038 None:intergenic 45.0%
TGGCGAAGGAAATTCAGTAC+CGG + chr1_1:80695023-80695042 None:intergenic 45.0%
!! TCCAGCACTTGATAGCGTAA+TGG - chr1_1:80695388-80695407 Msa0047630:five_prime_UTR 45.0%
!! CCAGCACTTGATAGCGTAAT+GGG - chr1_1:80695389-80695408 Msa0047630:five_prime_UTR 45.0%
AATGCTCAAGCATTTGCGCA+TGG + chr1_1:80695636-80695655 None:intergenic 45.0%
!! TAAAGATATATTATATTATA+CGG - chr1_1:80692938-80692957 Msa0047630:intron 5.0%
!!! TTTTTTATTATAAAAAAGTT+TGG + chr1_1:80693635-80693654 None:intergenic 5.0%
!! ATATTTAACTATTAAATTAA+AGG - chr1_1:80694077-80694096 Msa0047630:intron 5.0%
TGCTTGCAGTGTCACCATTG+AGG - chr1_1:80690293-80690312 Msa0047630:three_prime_UTR 50.0%
CGTCGATGGAGACATCTTAC+CGG - chr1_1:80690459-80690478 Msa0047630:intron 50.0%
GATGAATTCTTCGGCGTCAC+TGG - chr1_1:80690543-80690562 Msa0047630:intron 50.0%
ATTGGACACCAGACTTGCAC+AGG - chr1_1:80691450-80691469 Msa0047630:intron 50.0%
CAGGAGATTTGTGCAAGCTG+TGG - chr1_1:80691469-80691488 Msa0047630:intron 50.0%
GTGAAGCAGAAGCAGCAAGT+TGG - chr1_1:80691825-80691844 Msa0047630:intron 50.0%
AGAGGGAAGTGATCAGTCCA+TGG - chr1_1:80691885-80691904 Msa0047630:intron 50.0%
GCCACATGTGCAGAAAAGAC+TGG + chr1_1:80692018-80692037 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG - chr1_1:80692526-80692545 Msa0047630:intron 50.0%
!! CAGTTGGTAGGGACAACACA+TGG - chr1_1:80692538-80692557 Msa0047630:intron 50.0%
AAGGTCCAGGGTTCAAACAC+CGG - chr1_1:80692569-80692588 Msa0047630:intron 50.0%
CACAACCTTGGGGGTTGTAT+TGG + chr1_1:80693686-80693705 None:intergenic 50.0%
TTTCGTGGACACAACCTTGG+GGG + chr1_1:80693695-80693714 None:intergenic 50.0%
CTTTCGTGGACACAACCTTG+GGG + chr1_1:80693696-80693715 None:intergenic 50.0%
GTCTTTCGTGGACACAACCT+TGG + chr1_1:80693698-80693717 None:intergenic 50.0%
GGCCGGATCATTGCGTTTAT+CGG + chr1_1:80694606-80694625 None:intergenic 50.0%
ATAAACGCAATGATCCGGCC+AGG - chr1_1:80694606-80694625 Msa0047630:intron 50.0%
GGAAACAATGTGTTCCTGGC+CGG + chr1_1:80694623-80694642 None:intergenic 50.0%
GGTGGGAAACAATGTGTTCC+TGG + chr1_1:80694627-80694646 None:intergenic 50.0%
GTTACCACTGTTGTCAGAGG+TGG + chr1_1:80694648-80694667 None:intergenic 50.0%
CTTTACACATGCCATGGGGT+GGG + chr1_1:80694947-80694966 None:intergenic 50.0%
TGGGAAGTCGAAGAAGTGAC+CGG + chr1_1:80695000-80695019 None:intergenic 50.0%
TCACTTCTTCGACTTCCCAC+CGG - chr1_1:80695001-80695020 Msa0047630:intron 50.0%
! CGAAGGAAATTCAGTACCGG+TGG + chr1_1:80695020-80695039 None:intergenic 50.0%
! GAGAGCATAGACGCAGCTAT+TGG - chr1_1:80695317-80695336 Msa0047630:five_prime_UTR 50.0%
! GCTTTGAGTCCAAGTGGTAG+TGG + chr1_1:80695368-80695387 None:intergenic 50.0%
CCCATTACGCTATCAAGTGC+TGG + chr1_1:80695392-80695411 None:intergenic 50.0%
CTTCAAGTGCATGATGAGGG+TGG + chr1_1:80695446-80695465 None:intergenic 50.0%
TTGAAACCTAGCTAGCTCCC+CGG + chr1_1:80695488-80695507 None:intergenic 50.0%
GACTTCGGTGACCTTTCCGA+AGG - chr1_1:80690388-80690407 Msa0047630:CDS 55.0%
GTTCTCCGTTAGTTACGGCG+AGG - chr1_1:80690513-80690532 Msa0047630:intron 55.0%
AAGCTGTTCGGGTCAAGGCT+CGG - chr1_1:80690621-80690640 Msa0047630:intron 55.0%
AAGTGCACGAGACACTCGTC+AGG - chr1_1:80691388-80691407 Msa0047630:intron 55.0%
GTGCAAGCTGTGGAACAGCT+AGG - chr1_1:80691479-80691498 Msa0047630:intron 55.0%
AGCTGTGGAACAGCTAGGAG+TGG - chr1_1:80691484-80691503 Msa0047630:intron 55.0%
GGAACAGCTAGGAGTGGACA+AGG - chr1_1:80691490-80691509 Msa0047630:intron 55.0%
ACAGCTAGGAGTGGACAAGG+CGG - chr1_1:80691493-80691512 Msa0047630:intron 55.0%
! GGCGGTGCCTTCAAGGATTT+TGG - chr1_1:80691511-80691530 Msa0047630:intron 55.0%
! ATGGTGGTGTAGGGGTGAAG+AGG - chr1_1:80691867-80691886 Msa0047630:intron 55.0%
! TGGTGGTGTAGGGGTGAAGA+GGG - chr1_1:80691868-80691887 Msa0047630:intron 55.0%
TAGGAGGAGGAGGAGGATGA+GGG + chr1_1:80691937-80691956 None:intergenic 55.0%
ATAGGAGGAGGAGGAGGATG+AGG + chr1_1:80691938-80691957 None:intergenic 55.0%
TCATCCTCCTCCTCCTCCTA+TGG - chr1_1:80691937-80691956 Msa0047630:intron 55.0%
!! AATGGTGCCATAGGAGGAGG+AGG + chr1_1:80691947-80691966 None:intergenic 55.0%
!! TGCAATGGTGCCATAGGAGG+AGG + chr1_1:80691950-80691969 None:intergenic 55.0%
!! TGGTGCAATGGTGCCATAGG+AGG + chr1_1:80691953-80691972 None:intergenic 55.0%
GCCACTCTCATGGACACCAT+CGG - chr1_1:80692048-80692067 Msa0047630:intron 55.0%
ACCGATGGTGTCCATGAGAG+TGG + chr1_1:80692052-80692071 None:intergenic 55.0%
! GAAGGATCTTGAGGTGGTGG+AGG + chr1_1:80692079-80692098 None:intergenic 55.0%
TTGGCATTCTCACCACCAGC+AGG - chr1_1:80692102-80692121 Msa0047630:intron 55.0%
TAGAGAGAGCTACCTGCTGG+TGG + chr1_1:80692117-80692136 None:intergenic 55.0%
GGTTAGAGAGAGCTACCTGC+TGG + chr1_1:80692120-80692139 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_1:80692525-80692544 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_1:80692522-80692541 Msa0047630:intron 55.0%
CCACTGTTGTCAGAGGTGGT+GGG + chr1_1:80694644-80694663 None:intergenic 55.0%
ACCACTGTTGTCAGAGGTGG+TGG + chr1_1:80694645-80694664 None:intergenic 55.0%
GCTTTACACATGCCATGGGG+TGG + chr1_1:80694948-80694967 None:intergenic 55.0%
ATTAGCACCCTTCCTGCTCC+CGG - chr1_1:80694978-80694997 Msa0047630:intron 55.0%
GGGAAGTCGAAGAAGTGACC+GGG + chr1_1:80694999-80695018 None:intergenic 55.0%
!! CCAAGTGGTAGTGGCAACCA+TGG + chr1_1:80695359-80695378 None:intergenic 55.0%
CCATGGTTGCCACTACCACT+TGG - chr1_1:80695356-80695375 Msa0047630:five_prime_UTR 55.0%
!! GCTGGAGCTTTGAGTCCAAG+TGG + chr1_1:80695374-80695393 None:intergenic 55.0%
TGGACAAGGCGGTGCCTTCA+AGG - chr1_1:80691504-80691523 Msa0047630:intron 60.0%
!! AAACCCATGGTGGGTGCAGC+TGG + chr1_1:80691911-80691930 None:intergenic 60.0%
TGAGGGGGGAAACCCATGGT+GGG + chr1_1:80691920-80691939 None:intergenic 60.0%
ATGAGGGGGGAAACCCATGG+TGG + chr1_1:80691921-80691940 None:intergenic 60.0%
AGGATGAGGGGGGAAACCCA+TGG + chr1_1:80691924-80691943 None:intergenic 60.0%
AGGAGGAGGAGGAGGATGAG+GGG + chr1_1:80691936-80691955 None:intergenic 60.0%
CATGAGAGTGGCTGCGGTGT+AGG + chr1_1:80692040-80692059 None:intergenic 60.0%
CTACACCGCAGCCACTCTCA+TGG - chr1_1:80692038-80692057 Msa0047630:intron 60.0%
GGTGTCCATGAGAGTGGCTG+CGG + chr1_1:80692046-80692065 None:intergenic 60.0%
GGTGTCCGGTGTTTGAACCC+TGG + chr1_1:80692577-80692596 None:intergenic 60.0%
CCCACCACCTCTGACAACAG+TGG - chr1_1:80694641-80694660 Msa0047630:intron 60.0%
GAAGTGACCGGGAGCAGGAA+GGG + chr1_1:80694988-80695007 None:intergenic 60.0%
AGAAGTGACCGGGAGCAGGA+AGG + chr1_1:80694989-80695008 None:intergenic 60.0%
TCGAAGAAGTGACCGGGAGC+AGG + chr1_1:80694993-80695012 None:intergenic 60.0%
CCTAGCTAGCTCCCCGGTAA+AGG + chr1_1:80695482-80695501 None:intergenic 60.0%
CCTTTACCGGGGAGCTAGCT+AGG - chr1_1:80695479-80695498 Msa0047630:five_prime_UTR 60.0%
!! ATGGTGGGTGCAGCTGGCCA+TGG + chr1_1:80691905-80691924 None:intergenic 65.0%
ATGGCCAGCTGCACCCACCA+TGG - chr1_1:80691904-80691923 Msa0047630:intron 65.0%
TGGCCAGCTGCACCCACCAT+GGG - chr1_1:80691905-80691924 Msa0047630:intron 65.0%
GAGGAGGAGGAGGATGAGGG+GGG + chr1_1:80691934-80691953 None:intergenic 65.0%
GGAGGAGGAGGAGGATGAGG+GGG + chr1_1:80691935-80691954 None:intergenic 65.0%
! GGTGCCATAGGAGGAGGAGG+AGG + chr1_1:80691944-80691963 None:intergenic 65.0%
!! GGTGGTGGAGGAGCTACCGA+TGG + chr1_1:80692067-80692086 None:intergenic 65.0%
ATGCCATGGGGTGGGATGCC+GGG + chr1_1:80694939-80694958 None:intergenic 65.0%
CATGCCATGGGGTGGGATGC+CGG + chr1_1:80694940-80694959 None:intergenic 65.0%
TGGGGTGGGATGCCGGGGAT+TGG + chr1_1:80694933-80694952 None:intergenic 70.0%
ATCCCCGGCATCCCACCCCA+TGG - chr1_1:80694933-80694952 Msa0047630:intron 70.0%
TGCCATGGGGTGGGATGCCG+GGG + chr1_1:80694938-80694957 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 80690046 80695738 80690046 ID=Msa0047630;Name=Msa0047630
chr1_1 mRNA 80690046 80695738 80690046 ID=Msa0047630-mRNA-1;Parent=Msa0047630;Name=Msa0047630-mRNA-1;_AED=0.08;_eAED=0.08;_QI=1500|1|1|1|1|0.8|5|275|89
chr1_1 exon 80690046 80690473 80690046 ID=Msa0047630-mRNA-1:exon:27906;Parent=Msa0047630-mRNA-1
chr1_1 exon 80690762 80691184 80690762 ID=Msa0047630-mRNA-1:exon:27905;Parent=Msa0047630-mRNA-1
chr1_1 exon 80693661 80693993 80693661 ID=Msa0047630-mRNA-1:exon:27904;Parent=Msa0047630-mRNA-1
chr1_1 exon 80694198 80694338 80694198 ID=Msa0047630-mRNA-1:exon:27903;Parent=Msa0047630-mRNA-1
chr1_1 exon 80695019 80695738 80695019 ID=Msa0047630-mRNA-1:exon:27902;Parent=Msa0047630-mRNA-1
chr1_1 five_prime_UTR 80695019 80695738 80695019 ID=Msa0047630-mRNA-1:five_prime_utr;Parent=Msa0047630-mRNA-1
chr1_1 five_prime_UTR 80694198 80694338 80694198 ID=Msa0047630-mRNA-1:five_prime_utr;Parent=Msa0047630-mRNA-1
chr1_1 five_prime_UTR 80693661 80693993 80693661 ID=Msa0047630-mRNA-1:five_prime_utr;Parent=Msa0047630-mRNA-1
chr1_1 five_prime_UTR 80690879 80691184 80690879 ID=Msa0047630-mRNA-1:five_prime_utr;Parent=Msa0047630-mRNA-1
chr1_1 CDS 80690762 80690878 80690762 ID=Msa0047630-mRNA-1:cds;Parent=Msa0047630-mRNA-1
chr1_1 CDS 80690321 80690473 80690321 ID=Msa0047630-mRNA-1:cds;Parent=Msa0047630-mRNA-1
chr1_1 three_prime_UTR 80690046 80690320 80690046 ID=Msa0047630-mRNA-1:three_prime_utr;Parent=Msa0047630-mRNA-1
Gene Sequence

>Msa0047630

ATGCAGAGACCATCATTTGGATGTCCAATCCCCGGCATCCCACCCCATGGCATGTGTAAAGCAGATCACGGCATTAGCACCCTTCCTGCTCCCGGTCACTTCTTCGACTTCCCACCGTCAAATGAGAGCATAGACGCAGCTATTGGAGATGTTTTATCAAAACCATGGTTGCCACTACCACTTGGACTCAAAGCTCCAGCACTTGATAGCGTAATGGGTGAACTACAAAGACAAGGAATTTCAAACATTCCACCCTCATCATGCACTTGA

Protein sequence

>Msa0047630

MQRPSFGCPIPGIPPHGMCKADHGISTLPAPGHFFDFPPSNESIDAAIGDVLSKPWLPLPLGLKAPALDSVMGELQRQGISNIPPSSCT*