Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280370 | A0A2K3P439 | 24.934 | 377 | 218 | 11 | 99 | 449 | 241 | 578 | 3.58e-12 | 81.3 |
| Msa1280370 | A0A2K3P439 | 31.641 | 512 | 276 | 11 | 1 | 451 | 339 | 837 | 3.45e-46 | 184 |
| Msa1280370 | A0A2K3P439 | 32.203 | 354 | 220 | 6 | 132 | 473 | 1 | 346 | 2.61e-34 | 149 |
| Msa1280370 | A0A2K3P439 | 59.091 | 440 | 157 | 7 | 72 | 502 | 756 | 1181 | 1.05e-144 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004180 | Msa1280370 | -0.812280 | 4.589125e-51 | -8.615850e-47 |
| Msa0018610 | Msa1280370 | -0.801549 | 8.544033e-49 | -8.615850e-47 |
| Msa0027020 | Msa1280370 | -0.801331 | 9.470883e-49 | -8.615850e-47 |
| Msa0075820 | Msa1280370 | -0.803366 | 3.607543e-49 | -8.615850e-47 |
| Msa0076590 | Msa1280370 | -0.813396 | 2.615069e-51 | -8.615850e-47 |
| Msa0089700 | Msa1280370 | -0.813792 | 2.138944e-51 | -8.615850e-47 |
| Msa0093360 | Msa1280370 | -0.803176 | 3.949914e-49 | -8.615850e-47 |
| Msa0615460 | Msa1280370 | -0.802229 | 6.195068e-49 | -8.615850e-47 |
| Msa0619030 | Msa1280370 | -0.838214 | 3.284350e-57 | -8.615850e-47 |
| Msa0619450 | Msa1280370 | -0.806136 | 9.524662e-50 | -8.615850e-47 |
| Msa0619960 | Msa1280370 | -0.809948 | 1.470023e-50 | -8.615850e-47 |
| Msa0620050 | Msa1280370 | -0.808168 | 3.535440e-50 | -8.615850e-47 |
| Msa0633070 | Msa1280370 | 0.825550 | 4.409520e-54 | -8.615850e-47 |
| Msa0637590 | Msa1280370 | 0.830798 | 2.397275e-55 | -8.615850e-47 |
| Msa0637700 | Msa1280370 | 0.806609 | 7.568795e-50 | -8.615850e-47 |
| Msa0648840 | Msa1280370 | -0.800907 | 1.156421e-48 | -8.615850e-47 |
| Msa0659580 | Msa1280370 | -0.808388 | 3.174394e-50 | -8.615850e-47 |
| Msa0679270 | Msa1280370 | -0.804305 | 2.302859e-49 | -8.615850e-47 |
| Msa0711860 | Msa1280370 | -0.808055 | 3.736933e-50 | -8.615850e-47 |
| Msa0729740 | Msa1280370 | -0.802998 | 4.298502e-49 | -8.615850e-47 |
| Msa0743370 | Msa1280370 | 0.805213 | 1.487663e-49 | -8.615850e-47 |
| Msa0784780 | Msa1280370 | -0.800476 | 1.415581e-48 | -8.615850e-47 |
| Msa0808500 | Msa1280370 | -0.804542 | 2.055102e-49 | -8.615850e-47 |
| Msa0814660 | Msa1280370 | 0.807049 | 6.110996e-50 | -8.615850e-47 |
| Msa0136090 | Msa1280370 | 0.817618 | 3.003211e-52 | -8.615850e-47 |
| Msa0162170 | Msa1280370 | -0.814006 | 1.918686e-51 | -8.615850e-47 |
| Msa0167570 | Msa1280370 | -0.805025 | 1.629032e-49 | -8.615850e-47 |
| Msa0168470 | Msa1280370 | -0.811223 | 7.795308e-51 | -8.615850e-47 |
| Msa0185540 | Msa1280370 | -0.812119 | 4.976055e-51 | -8.615850e-47 |
| Msa0224180 | Msa1280370 | -0.801196 | 1.009371e-48 | -8.615850e-47 |
| Msa1244770 | Msa1280370 | -0.805816 | 1.112065e-49 | -8.615850e-47 |
| Msa1280360 | Msa1280370 | 0.873323 | 1.607541e-67 | -8.615850e-47 |
| Msa1280370 | Msa1287100 | -0.832827 | 7.567915e-56 | -8.615850e-47 |
| Msa1280370 | Msa1300850 | -0.804200 | 2.421075e-49 | -8.615850e-47 |
| Msa1280370 | Msa1312570 | 0.817202 | 3.726796e-52 | -8.615850e-47 |
| Msa1280370 | Msa1325260 | -0.800853 | 1.186185e-48 | -8.615850e-47 |
| Msa1280370 | Msa1330080 | -0.807981 | 3.875532e-50 | -8.615850e-47 |
| Msa1280370 | Msa1350130 | -0.806335 | 8.648377e-50 | -8.615850e-47 |
| Msa1280370 | Msa1437590 | 0.800502 | 1.398716e-48 | -8.615850e-47 |
| Msa1280370 | Msa1439000 | -0.802345 | 5.862525e-49 | -8.615850e-47 |
| Msa0390760 | Msa1280370 | -0.802184 | 6.326958e-49 | -8.615850e-47 |
| Msa0444770 | Msa1280370 | -0.802136 | 6.474745e-49 | -8.615850e-47 |
| Msa0474660 | Msa1280370 | -0.804345 | 2.258969e-49 | -8.615850e-47 |
| Msa0476140 | Msa1280370 | -0.815451 | 9.183815e-52 | -8.615850e-47 |
| Msa0995130 | Msa1280370 | -0.809880 | 1.520154e-50 | -8.615850e-47 |
| Msa1002550 | Msa1280370 | -0.803210 | 3.886423e-49 | -8.615850e-47 |
| Msa1058550 | Msa1280370 | -0.818199 | 2.219727e-52 | -8.615850e-47 |
| Msa1082640 | Msa1280370 | -0.801847 | 7.421671e-49 | -8.615850e-47 |
| Msa0264230 | Msa1280370 | 0.801800 | 7.588514e-49 | -8.615850e-47 |
| Msa0275730 | Msa1280370 | 0.805336 | 1.402299e-49 | -8.615850e-47 |
| Msa0296490 | Msa1280370 | -0.804735 | 1.872741e-49 | -8.615850e-47 |
| Msa0322480 | Msa1280370 | -0.811933 | 5.464834e-51 | -8.615850e-47 |
| Msa0357470 | Msa1280370 | 0.804774 | 1.837767e-49 | -8.615850e-47 |
| Msa0357510 | Msa1280370 | 0.801875 | 7.324668e-49 | -8.615850e-47 |
| Msa1130150 | Msa1280370 | -0.803030 | 4.234553e-49 | -8.615850e-47 |
| Msa1156100 | Msa1280370 | -0.815815 | 7.619858e-52 | -8.615850e-47 |
| Msa1163130 | Msa1280370 | -0.814018 | 1.907672e-51 | -8.615850e-47 |
| Msa1163230 | Msa1280370 | -0.808792 | 2.602084e-50 | -8.615850e-47 |
| Msa1184930 | Msa1280370 | 0.867422 | 1.384896e-65 | -8.615850e-47 |
| Msa1191270 | Msa1280370 | 0.833070 | 6.586172e-56 | -8.615850e-47 |
| Msa1197740 | Msa1280370 | -0.800889 | 1.166256e-48 | -8.615850e-47 |
| Msa0506700 | Msa1280370 | -0.800886 | 1.167639e-48 | -8.615850e-47 |
| Msa0514630 | Msa1280370 | -0.822537 | 2.246496e-53 | -8.615850e-47 |
| Msa0523980 | Msa1280370 | 0.821086 | 4.867032e-53 | -8.615850e-47 |
| Msa0524710 | Msa1280370 | 0.801315 | 9.539733e-49 | -8.615850e-47 |
| Msa0561450 | Msa1280370 | -0.803617 | 3.200757e-49 | -8.615850e-47 |
| Msa0597800 | Msa1280370 | 0.811876 | 5.622029e-51 | -8.615850e-47 |
| Msa0597820 | Msa1280370 | 0.808765 | 2.636906e-50 | -8.615850e-47 |
| Msa0858250 | Msa1280370 | -0.803911 | 2.781342e-49 | -8.615850e-47 |
| Msa0882480 | Msa1280370 | -0.813574 | 2.389301e-51 | -8.615850e-47 |
| Msa0925940 | Msa1280370 | 0.828169 | 1.043976e-54 | -8.615850e-47 |
| Msa0973850 | Msa1280370 | 0.802292 | 6.013547e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280370 | MtrunA17_Chr8g0348201 | 32.865 | 569 | 299 | 15 | 1 | 502 | 671 | 1223 | 6.84e-72 | 248 |
| Msa1280370 | MtrunA17_Chr8g0348201 | 27.812 | 489 | 273 | 18 | 72 | 498 | 240 | 710 | 2.36e-25 | 110 |
| Msa1280370 | MtrunA17_Chr8g0348201 | 27.333 | 300 | 118 | 9 | 16 | 220 | 1198 | 1492 | 2.58e-19 | 92.0 |
| Msa1280370 | MtrunA17_Chr8g0348201 | 25.000 | 436 | 256 | 13 | 93 | 472 | 1052 | 1472 | 7.98e-14 | 74.7 |
| Msa1280370 | MtrunA17_Chr8g0348251 | 31.944 | 576 | 293 | 16 | 1 | 502 | 223 | 773 | 4.29e-64 | 222 |
| Msa1280370 | MtrunA17_Chr8g0348251 | 31.443 | 194 | 119 | 7 | 318 | 502 | 78 | 266 | 8.35e-11 | 64.7 |
| Msa1280370 | MtrunA17_Chr1g0172051 | 28.521 | 568 | 324 | 15 | 1 | 498 | 2525 | 3080 | 2.28e-54 | 197 |
| Msa1280370 | MtrunA17_Chr1g0172051 | 29.021 | 572 | 314 | 17 | 1 | 496 | 2002 | 2557 | 2.82e-44 | 167 |
| Msa1280370 | MtrunA17_Chr1g0172051 | 26.795 | 571 | 337 | 14 | 1 | 502 | 1485 | 2043 | 3.46e-43 | 164 |
| Msa1280370 | MtrunA17_Chr1g0172051 | 26.738 | 561 | 323 | 17 | 11 | 502 | 985 | 1526 | 2.88e-31 | 129 |
| Msa1280370 | MtrunA17_Chr2g0314301 | 29.981 | 527 | 296 | 17 | 29 | 496 | 1028 | 1540 | 7.00e-51 | 187 |
| Msa1280370 | MtrunA17_Chr8g0359891 | 27.337 | 567 | 339 | 13 | 1 | 504 | 2381 | 2937 | 4.54e-50 | 185 |
| Msa1280370 | MtrunA17_Chr8g0359891 | 28.991 | 545 | 322 | 18 | 1 | 496 | 1885 | 2413 | 5.23e-41 | 158 |
| Msa1280370 | MtrunA17_Chr8g0359891 | 27.338 | 556 | 323 | 14 | 11 | 502 | 24 | 562 | 7.77e-39 | 151 |
| Msa1280370 | MtrunA17_Chr8g0359891 | 27.907 | 559 | 320 | 15 | 11 | 502 | 861 | 1403 | 1.76e-37 | 147 |
| Msa1280370 | MtrunA17_Chr8g0359891 | 29.870 | 539 | 302 | 15 | 1 | 472 | 1362 | 1891 | 1.25e-35 | 142 |
| Msa1280370 | MtrunA17_Chr8g0359891 | 22.792 | 566 | 334 | 17 | 1 | 499 | 521 | 1050 | 3.66e-18 | 88.6 |
| Msa1280370 | MtrunA17_Chr8g0359891 | 27.129 | 317 | 173 | 12 | 166 | 470 | 837 | 1107 | 3.36e-12 | 69.7 |
| Msa1280370 | MtrunA17_Chr1g0164011 | 27.526 | 574 | 332 | 15 | 1 | 502 | 1933 | 2494 | 1.60e-48 | 180 |
| Msa1280370 | MtrunA17_Chr1g0164011 | 27.500 | 560 | 321 | 15 | 11 | 502 | 986 | 1528 | 1.26e-37 | 148 |
| Msa1280370 | MtrunA17_Chr1g0164011 | 27.536 | 483 | 309 | 13 | 1 | 472 | 1487 | 1939 | 9.04e-26 | 112 |
| Msa1280370 | MtrunA17_Chr2g0323691 | 28.497 | 572 | 329 | 15 | 1 | 502 | 2528 | 3089 | 2.00e-48 | 180 |
| Msa1280370 | MtrunA17_Chr2g0323691 | 28.447 | 573 | 324 | 17 | 1 | 502 | 2009 | 2566 | 8.13e-42 | 160 |
| Msa1280370 | MtrunA17_Chr2g0323691 | 26.316 | 570 | 344 | 13 | 1 | 502 | 1486 | 2047 | 9.32e-37 | 145 |
| Msa1280370 | MtrunA17_Chr2g0323691 | 27.027 | 555 | 318 | 16 | 11 | 496 | 985 | 1521 | 1.48e-36 | 145 |
| Msa1280370 | MtrunA17_Chr2g0323691 | 25.598 | 418 | 242 | 13 | 78 | 470 | 1374 | 1747 | 1.14e-14 | 77.4 |
| Msa1280370 | MtrunA17_Chr2g0313421 | 29.779 | 497 | 286 | 15 | 57 | 496 | 149 | 639 | 2.24e-48 | 177 |
| Msa1280370 | MtrunA17_Chr1g0172231 | 27.778 | 576 | 332 | 15 | 1 | 504 | 843 | 1406 | 2.76e-48 | 179 |
| Msa1280370 | MtrunA17_Chr1g0172231 | 28.546 | 564 | 327 | 13 | 1 | 496 | 320 | 875 | 3.07e-43 | 164 |
| Msa1280370 | MtrunA17_Chr1g0172231 | 29.539 | 369 | 234 | 9 | 151 | 502 | 2 | 361 | 4.85e-31 | 128 |
| Msa1280370 | MtrunA17_Chr1g0172231 | 25.980 | 408 | 255 | 14 | 78 | 471 | 208 | 582 | 6.39e-14 | 74.7 |
| Msa1280370 | MtrunA17_Chr2g0313331 | 28.897 | 526 | 302 | 15 | 29 | 496 | 711 | 1222 | 2.96e-48 | 179 |
| Msa1280370 | MtrunA17_Chr2g0313491 | 32.533 | 375 | 237 | 6 | 99 | 472 | 1108 | 1467 | 3.50e-48 | 179 |
| Msa1280370 | MtrunA17_Chr2g0313351 | 29.213 | 534 | 301 | 17 | 20 | 496 | 1019 | 1532 | 4.75e-48 | 179 |
| Msa1280370 | MtrunA17_Chr1g0163931 | 28.098 | 573 | 334 | 16 | 1 | 504 | 1485 | 2048 | 4.96e-48 | 179 |
| Msa1280370 | MtrunA17_Chr1g0163931 | 27.321 | 560 | 320 | 16 | 11 | 501 | 984 | 1525 | 3.94e-37 | 146 |
| Msa1280370 | MtrunA17_Chr2g0313311 | 29.401 | 534 | 300 | 17 | 20 | 496 | 996 | 1509 | 1.21e-47 | 177 |
| Msa1280370 | MtrunA17_Chr2g0313311 | 34.351 | 131 | 79 | 2 | 318 | 443 | 777 | 905 | 5.67e-11 | 65.5 |
| Msa1280370 | MtrunA17_Chr1g0163761 | 26.829 | 574 | 340 | 14 | 1 | 504 | 2011 | 2574 | 8.89e-47 | 175 |
| Msa1280370 | MtrunA17_Chr1g0163761 | 29.494 | 573 | 310 | 20 | 1 | 496 | 1488 | 2043 | 1.91e-41 | 159 |
| Msa1280370 | MtrunA17_Chr1g0163761 | 27.798 | 554 | 315 | 15 | 11 | 496 | 987 | 1523 | 6.92e-37 | 145 |
| Msa1280370 | MtrunA17_Chr1g0163891 | 27.352 | 574 | 337 | 15 | 1 | 504 | 2544 | 3107 | 6.30e-46 | 172 |
| Msa1280370 | MtrunA17_Chr1g0163891 | 28.722 | 571 | 316 | 17 | 1 | 496 | 2022 | 2576 | 1.59e-43 | 166 |
| Msa1280370 | MtrunA17_Chr1g0163891 | 28.108 | 555 | 312 | 16 | 11 | 496 | 998 | 1534 | 4.85e-43 | 164 |
| Msa1280370 | MtrunA17_Chr1g0163891 | 28.621 | 573 | 315 | 18 | 1 | 496 | 1499 | 2054 | 7.22e-42 | 160 |
| Msa1280370 | MtrunA17_Chr1g0167981 | 29.859 | 566 | 314 | 20 | 1 | 496 | 2530 | 3082 | 9.05e-46 | 172 |
| Msa1280370 | MtrunA17_Chr1g0167981 | 26.876 | 573 | 342 | 11 | 1 | 502 | 2005 | 2571 | 3.52e-44 | 167 |
| Msa1280370 | MtrunA17_Chr1g0167981 | 26.087 | 575 | 344 | 11 | 1 | 502 | 1484 | 2050 | 2.00e-41 | 159 |
| Msa1280370 | MtrunA17_Chr1g0167981 | 28.083 | 527 | 295 | 14 | 13 | 473 | 983 | 1491 | 8.05e-35 | 139 |
| Msa1280370 | MtrunA17_Chr1g0163791 | 29.496 | 556 | 303 | 17 | 11 | 496 | 982 | 1518 | 5.61e-44 | 167 |
| Msa1280370 | MtrunA17_Chr1g0163791 | 25.481 | 416 | 247 | 15 | 78 | 471 | 1371 | 1745 | 8.79e-15 | 77.8 |
| Msa1280370 | MtrunA17_Chr1g0163791 | 25.735 | 272 | 133 | 8 | 1 | 211 | 1483 | 1746 | 2.33e-12 | 70.1 |
| Msa1280370 | MtrunA17_Chr6g0474571 | 27.604 | 576 | 331 | 14 | 1 | 502 | 2529 | 3092 | 6.46e-44 | 167 |
| Msa1280370 | MtrunA17_Chr6g0474571 | 27.225 | 573 | 334 | 14 | 1 | 502 | 1487 | 2047 | 1.53e-40 | 157 |
| Msa1280370 | MtrunA17_Chr6g0474571 | 27.679 | 560 | 321 | 14 | 11 | 502 | 984 | 1527 | 2.55e-40 | 156 |
| Msa1280370 | MtrunA17_Chr6g0474571 | 27.193 | 570 | 336 | 16 | 1 | 502 | 2009 | 2567 | 3.34e-37 | 147 |
| Msa1280370 | MtrunA17_Chr1g0170881 | 27.972 | 572 | 335 | 15 | 1 | 502 | 1484 | 2048 | 2.58e-43 | 165 |
| Msa1280370 | MtrunA17_Chr1g0170881 | 27.810 | 525 | 299 | 13 | 11 | 472 | 983 | 1490 | 7.99e-37 | 145 |
| Msa1280370 | MtrunA17_Chr1g0170881 | 25.472 | 424 | 230 | 15 | 93 | 469 | 1360 | 1744 | 7.76e-13 | 71.6 |
| Msa1280370 | MtrunA17_Chr1g0174511 | 28.777 | 556 | 307 | 17 | 11 | 496 | 982 | 1518 | 7.91e-42 | 160 |
| Msa1280370 | MtrunA17_Chr1g0174511 | 25.424 | 413 | 251 | 13 | 78 | 471 | 1371 | 1745 | 3.31e-16 | 82.4 |
| Msa1280370 | MtrunA17_Chr1g0174511 | 26.012 | 346 | 183 | 10 | 1 | 280 | 1483 | 1821 | 8.73e-16 | 80.9 |
| Msa1280370 | MtrunA17_Chr1g0163991 | 27.878 | 556 | 320 | 15 | 11 | 502 | 728 | 1266 | 3.89e-41 | 158 |
| Msa1280370 | MtrunA17_Chr1g0163991 | 28.000 | 525 | 298 | 14 | 11 | 472 | 24 | 531 | 2.63e-39 | 152 |
| Msa1280370 | MtrunA17_Chr1g0163991 | 24.652 | 503 | 309 | 13 | 1 | 478 | 525 | 982 | 5.93e-22 | 100 |
| Msa1280370 | MtrunA17_Chr2g0313541 | 28.235 | 510 | 301 | 15 | 49 | 500 | 1039 | 1541 | 4.19e-41 | 158 |
| Msa1280370 | MtrunA17_Chr2g0313481 | 27.037 | 540 | 316 | 15 | 23 | 504 | 1034 | 1553 | 1.37e-40 | 156 |
| Msa1280370 | MtrunA17_Chr1g0172161 | 27.679 | 560 | 320 | 15 | 11 | 502 | 24 | 566 | 3.47e-40 | 152 |
| Msa1280370 | MtrunA17_Chr2g0313591 | 28.936 | 470 | 274 | 12 | 57 | 472 | 1039 | 1502 | 8.21e-39 | 151 |
| Msa1280370 | MtrunA17_Chr1g0163801 | 30.807 | 409 | 238 | 12 | 99 | 469 | 4 | 405 | 1.12e-38 | 146 |
| Msa1280370 | MtrunA17_Chr1g0172141 | 26.894 | 528 | 305 | 14 | 11 | 473 | 984 | 1495 | 1.53e-33 | 135 |
| Msa1280370 | MtrunA17_Chr1g0172101 | 31.475 | 305 | 193 | 6 | 176 | 473 | 5 | 300 | 9.24e-32 | 125 |
| Msa1280370 | MtrunA17_Chr1g0172071 | 33.810 | 210 | 128 | 4 | 292 | 496 | 51 | 254 | 3.16e-25 | 105 |
| Msa1280370 | MtrunA17_Chr2g0313471 | 29.688 | 256 | 171 | 5 | 248 | 498 | 1 | 252 | 3.03e-24 | 102 |
| Msa1280370 | MtrunA17_Chr1g0164121 | 29.371 | 286 | 193 | 6 | 223 | 502 | 24 | 306 | 1.60e-23 | 100 |
| Msa1280370 | MtrunA17_Chr1g0171091 | 32.374 | 278 | 178 | 5 | 228 | 498 | 29 | 303 | 1.90e-23 | 100 |
| Msa1280370 | MtrunA17_Chr1g0167331 | 27.520 | 367 | 220 | 9 | 72 | 421 | 11 | 348 | 6.33e-21 | 94.4 |
| Msa1280370 | MtrunA17_Chr1g0174521 | 36.478 | 159 | 97 | 2 | 340 | 496 | 1 | 157 | 1.04e-17 | 82.8 |
| Msa1280370 | MtrunA17_Chr1g0174521 | 31.967 | 122 | 71 | 4 | 1 | 117 | 125 | 239 | 2.71e-11 | 63.9 |
| Msa1280370 | MtrunA17_Chr4g0011631 | 27.179 | 390 | 234 | 15 | 92 | 472 | 3 | 351 | 1.11e-17 | 85.1 |
| Msa1280370 | MtrunA17_Chr7g0255401 | 25.059 | 423 | 271 | 15 | 76 | 472 | 814 | 1216 | 8.10e-16 | 80.9 |
| Msa1280370 | MtrunA17_Chr7g0255401 | 25.613 | 367 | 217 | 16 | 72 | 422 | 1090 | 1416 | 6.71e-11 | 65.1 |
| Msa1280370 | MtrunA17_Chr2g0314131 | 37.143 | 140 | 86 | 1 | 313 | 452 | 16 | 153 | 2.58e-15 | 73.6 |
| Msa1280370 | MtrunA17_Chr7g0255111 | 25.542 | 415 | 221 | 16 | 94 | 475 | 1278 | 1637 | 4.68e-15 | 78.6 |
| Msa1280370 | MtrunA17_Chr4g0011661 | 26.420 | 352 | 208 | 13 | 133 | 472 | 38 | 350 | 2.66e-14 | 75.1 |
| Msa1280370 | MtrunA17_Chr5g0414911 | 23.798 | 416 | 231 | 15 | 85 | 468 | 1176 | 1537 | 4.53e-14 | 75.5 |
| Msa1280370 | MtrunA17_Chr2g0314151 | 33.813 | 139 | 82 | 4 | 363 | 496 | 2 | 135 | 1.37e-13 | 68.6 |
| Msa1280370 | MtrunA17_Chr1g0164101 | 36.697 | 109 | 67 | 1 | 364 | 470 | 93 | 201 | 8.53e-13 | 68.2 |
| Msa1280370 | MtrunA17_Chr1g0163681 | 27.097 | 155 | 93 | 3 | 30 | 166 | 11 | 163 | 7.54e-12 | 63.9 |
| Msa1280370 | MtrunA17_Chr3g0099591 | 24.450 | 409 | 223 | 14 | 99 | 483 | 826 | 1172 | 1.13e-11 | 67.8 |
| Msa1280370 | MtrunA17_Chr1g0170961 | 34.286 | 105 | 68 | 1 | 366 | 470 | 1 | 104 | 5.67e-11 | 60.8 |
| Msa1280370 | MtrunA17_Chr1g0163691 | 28.333 | 180 | 114 | 5 | 165 | 333 | 13 | 188 | 5.86e-11 | 62.0 |
| Msa1280370 | MtrunA17_Chr1g0172081 | 29.651 | 172 | 90 | 5 | 317 | 482 | 94 | 240 | 7.09e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 110 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAACAATACCAAACATTTA+TGG | 0.176297 | 8_3:-18558154 | None:intergenic |
| GTTCTAAAGTTTCATGTATA+AGG | 0.220204 | 8_3:+18558987 | Msa1280370:three_prime_UTR |
| TTTCTGCAATTTAATTTCTT+TGG | 0.222752 | 8_3:+18556639 | Msa1280370:CDS |
| CTCCTTTGTTGAAATTGATT+TGG | 0.229961 | 8_3:+18556587 | Msa1280370:CDS |
| CCAGAATTGTTTCATGTATA+AGG | 0.240864 | 8_3:+18559074 | Msa1280370:three_prime_UTR |
| ATCGGAGGGTGTTTAATTCT+TGG | 0.269673 | 8_3:-18557882 | None:intergenic |
| AACTTCAAAATTGTTATCAT+TGG | 0.284295 | 8_3:-18556922 | None:intergenic |
| TAAAGTCTTGTCACAGCTTA+AGG | 0.296986 | 8_3:+18558047 | Msa1280370:CDS |
| CCTTATACATGAAACAATTC+TGG | 0.300277 | 8_3:-18559074 | None:intergenic |
| CGTGAATGACACTTCTTTCA+AGG | 0.306836 | 8_3:-18558469 | None:intergenic |
| GCGGAACTGTAATTCTATTA+AGG | 0.314727 | 8_3:+18556747 | Msa1280370:CDS |
| AATCAGTTCATTTGCTTCTT+CGG | 0.321686 | 8_3:-18556890 | None:intergenic |
| TTTCAGTACGCTCAAAGTTT+TGG | 0.342799 | 8_3:-18558280 | None:intergenic |
| AAAGCCTTCCTGCAGATATA+CGG | 0.345620 | 8_3:+18559023 | Msa1280370:three_prime_UTR |
| ATATTTGTTAATACAAAGAT+TGG | 0.348592 | 8_3:+18556772 | Msa1280370:CDS |
| AAAGTCTTGTCACAGCTTAA+GGG | 0.360173 | 8_3:+18558048 | Msa1280370:CDS |
| CAAGCGAGACAAAGGCTTGC+CGG | 0.361282 | 8_3:-18557092 | None:intergenic |
| AAAATTGTTTCTTCTACAAC+AGG | 0.368057 | 8_3:+18556301 | Msa1280370:CDS |
| CAATTTAATTTCTTTGGTTG+TGG | 0.372279 | 8_3:+18556645 | Msa1280370:CDS |
| AATAGAATCTCACCTTCATT+TGG | 0.375360 | 8_3:-18558363 | None:intergenic |
| ACTTCAAAATTGTTATCATT+GGG | 0.381586 | 8_3:-18556921 | None:intergenic |
| TACCTAGTGTCAGCACATTC+AGG | 0.389560 | 8_3:-18557813 | None:intergenic |
| ATCTTCAAACCATAAATGTT+TGG | 0.393298 | 8_3:+18558145 | Msa1280370:CDS |
| GAATTGAAGGTGACAATAGA+TGG | 0.396217 | 8_3:+18558540 | Msa1280370:CDS |
| ACAAAGGCTTGCCGGTTTGA+TGG | 0.397094 | 8_3:-18557084 | None:intergenic |
| GACAATAGATGGAGTCGTTT+GGG | 0.407480 | 8_3:+18558551 | Msa1280370:CDS |
| AAACAACTATTGACAAATCA+AGG | 0.408805 | 8_3:+18558906 | Msa1280370:three_prime_UTR |
| CATTTGAATCGGACAAAGCT+TGG | 0.412800 | 8_3:-18556235 | None:intergenic |
| TGTCTTTCTCCAAACTGAAA+AGG | 0.417228 | 8_3:+18558205 | Msa1280370:CDS |
| ATTGTCACCTTCAATTCATC+TGG | 0.421406 | 8_3:-18558534 | None:intergenic |
| CCATAGGATTTGAACGCTCC+TGG | 0.423683 | 8_3:+18558103 | Msa1280370:CDS |
| AGAGGGGAATATCTCTTTGA+AGG | 0.426607 | 8_3:-18558001 | None:intergenic |
| GGCTTTGTATGTATTTCTAC+TGG | 0.431437 | 8_3:+18559192 | Msa1280370:three_prime_UTR |
| CTTGTCACAGCTTAAGGGAT+TGG | 0.440435 | 8_3:+18558053 | Msa1280370:CDS |
| TGACAATAGATGGAGTCGTT+TGG | 0.440714 | 8_3:+18558550 | Msa1280370:CDS |
| CATTCAAAGGCGGCACTACC+TGG | 0.444041 | 8_3:+18557949 | Msa1280370:CDS |
| CTCTGACTGAAGTTTACATA+TGG | 0.445397 | 8_3:+18556150 | Msa1280370:five_prime_UTR |
| AGCCTTTGTCTCGCTTGATA+AGG | 0.447286 | 8_3:+18557098 | Msa1280370:CDS |
| AATCTGAAGTGCATTTATCC+TGG | 0.451073 | 8_3:+18556958 | Msa1280370:CDS |
| ATTGGACCTCAAGGAACTCT+TGG | 0.453817 | 8_3:+18556790 | Msa1280370:CDS |
| GAGTAAAAGCTTTCAAGCTT+AGG | 0.455794 | 8_3:-18558420 | None:intergenic |
| CGAGGATAAATTGCTAATCA+AGG | 0.456995 | 8_3:+18558883 | Msa1280370:three_prime_UTR |
| TTAATTTCTTTGGTTGTGGA+TGG | 0.458558 | 8_3:+18556649 | Msa1280370:CDS |
| CCAGGAGCGTTCAAATCCTA+TGG | 0.462054 | 8_3:-18558103 | None:intergenic |
| ATTAGCAATTTATCCTCGCT+TGG | 0.463008 | 8_3:-18558878 | None:intergenic |
| CAAATCCTATGGATTCAAGC+TGG | 0.471441 | 8_3:-18558092 | None:intergenic |
| TAAAGTACCAGATGAATTGA+AGG | 0.471742 | 8_3:+18558527 | Msa1280370:CDS |
| ATCTGAAGTGCATTTATCCT+GGG | 0.473136 | 8_3:+18556959 | Msa1280370:CDS |
| AATAGAAATTGTGGCTAAAG+AGG | 0.474668 | 8_3:+18558332 | Msa1280370:CDS |
| GAGCTTAGTATTGTGACTCT+TGG | 0.479767 | 8_3:+18558390 | Msa1280370:CDS |
| TATCATGAAAGCACGGCAAT+CGG | 0.479955 | 8_3:-18557900 | None:intergenic |
| AAGCCTTCCTGCAGATATAC+GGG | 0.482952 | 8_3:+18559024 | Msa1280370:three_prime_UTR |
| CACTCTAGAATGCGCACCCC+AGG | 0.484242 | 8_3:-18556976 | None:intergenic |
| AGGCTTGATGTTAAAGATTG+TGG | 0.497483 | 8_3:+18558225 | Msa1280370:CDS |
| TATTGACAAATCAAGGGCTT+CGG | 0.503392 | 8_3:+18558913 | Msa1280370:three_prime_UTR |
| TGGTGTCAAGTTTCTCAAAC+GGG | 0.504355 | 8_3:-18558175 | None:intergenic |
| GACCAACTGATCATTTGAAT+CGG | 0.511588 | 8_3:-18556246 | None:intergenic |
| TAATTTCTTTGGTTGTGGAT+GGG | 0.513589 | 8_3:+18556650 | Msa1280370:CDS |
| GTCCGATTCAAATGATCAGT+TGG | 0.514945 | 8_3:+18556244 | Msa1280370:CDS |
| GTCAACGTCAGGTGTTTGAG+AGG | 0.515782 | 8_3:-18558019 | None:intergenic |
| ATTTCTACTGGTGCTATGCA+TGG | 0.521019 | 8_3:+18559204 | Msa1280370:three_prime_UTR |
| TTCTATAAATAAATTTGACC+TGG | 0.522993 | 8_3:+18559127 | Msa1280370:three_prime_UTR |
| TGAATCAATAATAGAAATTG+TGG | 0.524084 | 8_3:+18558323 | Msa1280370:CDS |
| AAATTGCAGAAACACCAGTC+CGG | 0.526237 | 8_3:-18556628 | None:intergenic |
| TGAAGGTGAGATTCTATTCA+CGG | 0.529586 | 8_3:+18558368 | Msa1280370:CDS |
| ATGGTGTCAAGTTTCTCAAA+CGG | 0.529805 | 8_3:-18558176 | None:intergenic |
| GCTCAAGTCGGAGACTGTCC+CGG | 0.530246 | 8_3:+18556609 | Msa1280370:CDS |
| AGTCGGAGACTGTCCCGGAC+TGG | 0.530741 | 8_3:+18556614 | Msa1280370:CDS |
| AAATCCTATGGATTCAAGCT+GGG | 0.534170 | 8_3:-18558091 | None:intergenic |
| AGCCAAATCAATTTCAACAA+AGG | 0.534397 | 8_3:-18556589 | None:intergenic |
| CTTCATGAACAAATTAAACT+CGG | 0.534769 | 8_3:+18559171 | Msa1280370:three_prime_UTR |
| CAGTTCATTTGCTTCTTCGG+TGG | 0.547151 | 8_3:-18556887 | None:intergenic |
| GAAGCAAAGATGATTGATCA+AGG | 0.548139 | 8_3:+18557841 | Msa1280370:CDS |
| CATAGGATTTGAACGCTCCT+GGG | 0.551145 | 8_3:+18558104 | Msa1280370:CDS |
| CAATGATGATCTTAACGCCT+CGG | 0.554603 | 8_3:+18556274 | Msa1280370:CDS |
| AGGAAAGGAAGTAAATGAGA+AGG | 0.554729 | 8_3:-18556700 | None:intergenic |
| AATTGCAGAAACACCAGTCC+GGG | 0.565200 | 8_3:-18556627 | None:intergenic |
| GAGGAAGATGAACCAAATGA+AGG | 0.577588 | 8_3:+18558351 | Msa1280370:CDS |
| CATGAAAGCACGGCAATCGG+AGG | 0.579478 | 8_3:-18557897 | None:intergenic |
| TACCTTATCAAGCGAGACAA+AGG | 0.580099 | 8_3:-18557100 | None:intergenic |
| GAAATTGATTTGGCTCAAGT+CGG | 0.583605 | 8_3:+18556597 | Msa1280370:CDS |
| ACTTTAGTACAGTCAACGTC+AGG | 0.586585 | 8_3:-18558030 | None:intergenic |
| CCTAAGTAAACTGAAAACAC+TGG | 0.593858 | 8_3:+18556720 | Msa1280370:CDS |
| AGCCTGAATGTGCTGACACT+AGG | 0.596514 | 8_3:+18557811 | Msa1280370:CDS |
| CTGGGGTGCGCATTCTAGAG+TGG | 0.597465 | 8_3:+18556977 | Msa1280370:CDS |
| ATGAAAGCACGGCAATCGGA+GGG | 0.599287 | 8_3:-18557896 | None:intergenic |
| AATCCTATGGATTCAAGCTG+GGG | 0.600127 | 8_3:-18558090 | None:intergenic |
| CAGTTTGGAGAAAGACACAA+TGG | 0.602100 | 8_3:-18558199 | None:intergenic |
| TCAACGTCAGGTGTTTGAGA+GGG | 0.605232 | 8_3:-18558018 | None:intergenic |
| AACTGAAAACACTGGAAGTG+CGG | 0.605945 | 8_3:+18556728 | Msa1280370:CDS |
| TTCAACGAACGGGTCTACCC+AGG | 0.606133 | 8_3:-18558121 | None:intergenic |
| AACAACTATTGACAAATCAA+GGG | 0.609235 | 8_3:+18558907 | Msa1280370:three_prime_UTR |
| AATACAAAGATTGGACCTCA+AGG | 0.611561 | 8_3:+18556781 | Msa1280370:CDS |
| CAACGTCAGGTGTTTGAGAG+GGG | 0.613021 | 8_3:-18558017 | None:intergenic |
| AGTGTCAGCACATTCAGGCT+CGG | 0.616762 | 8_3:-18557808 | None:intergenic |
| AGGCACTATGTCGCACCACA+AGG | 0.625880 | 8_3:-18557981 | None:intergenic |
| ACATGTAATTCTTTCAACGT+AGG | 0.633626 | 8_3:-18557000 | None:intergenic |
| ACGTATCTAAAAGAATTGTG+TGG | 0.645930 | 8_3:+18558965 | Msa1280370:three_prime_UTR |
| ATAGATGGAGTCGTTTGGGA+AGG | 0.646104 | 8_3:+18558555 | Msa1280370:CDS |
| ATGTAAACTTCAGTCAGAGA+CGG | 0.649877 | 8_3:-18556146 | None:intergenic |
| AATCATGCAACAGATTGATG+AGG | 0.657149 | 8_3:+18558593 | Msa1280370:CDS |
| TTGGAGAAAGACACAATGGA+TGG | 0.658404 | 8_3:-18558195 | None:intergenic |
| CTGGTACTTTATCACCAACA+CGG | 0.661999 | 8_3:-18558515 | None:intergenic |
| TGAAGGATCAATGAGACTCG+AGG | 0.662831 | 8_3:+18558852 | Msa1280370:intron |
| ACCTGGTACGAAATACCTTG+TGG | 0.668097 | 8_3:+18557966 | Msa1280370:CDS |
| ATCCTATGGATTCAAGCTGG+GGG | 0.673461 | 8_3:-18558089 | None:intergenic |
| TCTGAAGTGCATTTATCCTG+GGG | 0.674743 | 8_3:+18556960 | Msa1280370:CDS |
| GCCTTCCTGCAGATATACGG+GGG | 0.691591 | 8_3:+18559026 | Msa1280370:three_prime_UTR |
| AGCCTTCCTGCAGATATACG+GGG | 0.703435 | 8_3:+18559025 | Msa1280370:three_prime_UTR |
| GGAAGGCCAAGAGTTCCTTG+AGG | 0.771231 | 8_3:-18556796 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATAAAAATAAAAA+AGG | - | chr8_3:18557130-18557149 | None:intergenic | 0.0% |
| !!! | ATATTTGTTAATACAAAGAT+TGG | + | chr8_3:18556772-18556791 | Msa1280370:CDS | 15.0% |
| !! | TTAGTAATTCATAAATTCTA+TGG | - | chr8_3:18557538-18557557 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTGTGTGA+AGG | + | chr8_3:18558835-18558854 | Msa1280370:intron | 15.0% |
| !!! | TTTGTTTTTAAGATATAGAA+TGG | + | chr8_3:18559102-18559121 | Msa1280370:three_prime_UTR | 15.0% |
| !!! | CATACATCATTTTAATTTAG+AGG | - | chr8_3:18556377-18556396 | None:intergenic | 20.0% |
| !! | CTCTAAATTAAAATGATGTA+TGG | + | chr8_3:18556375-18556394 | Msa1280370:intron | 20.0% |
| !! | TTTACTTCGATAAATTGAAA+TGG | - | chr8_3:18556436-18556455 | None:intergenic | 20.0% |
| !! | TGTTTATTAATACTTATCCA+AGG | - | chr8_3:18556514-18556533 | None:intergenic | 20.0% |
| !!! | TTTCTGCAATTTAATTTCTT+TGG | + | chr8_3:18556639-18556658 | Msa1280370:CDS | 20.0% |
| !! | ACTTCAAAATTGTTATCATT+GGG | - | chr8_3:18556924-18556943 | None:intergenic | 20.0% |
| !! | AACTTCAAAATTGTTATCAT+TGG | - | chr8_3:18556925-18556944 | None:intergenic | 20.0% |
| !!! | TGATAACAATTTTGAAGTTA+CGG | + | chr8_3:18556926-18556945 | Msa1280370:CDS | 20.0% |
| !! | TCATCTAAATATATACATGA+TGG | + | chr8_3:18557150-18557169 | Msa1280370:intron | 20.0% |
| !!! | GGAATTTTTCATATATTTGA+TGG | + | chr8_3:18557414-18557433 | Msa1280370:intron | 20.0% |
| !!! | TTGTAATGCAACTATTTTAA+TGG | - | chr8_3:18557506-18557525 | None:intergenic | 20.0% |
| !! | ATCACGAAAATTAAGAAAAT+TGG | - | chr8_3:18557671-18557690 | None:intergenic | 20.0% |
| !!! | AATTTTCGTGATTTAGTTAA+CGG | + | chr8_3:18557679-18557698 | Msa1280370:intron | 20.0% |
| !! | ATACTACATTGATATAAGAA+AGG | - | chr8_3:18557708-18557727 | None:intergenic | 20.0% |
| !! | CATATATTAAATCCTGATAT+TGG | + | chr8_3:18557745-18557764 | Msa1280370:intron | 20.0% |
| !! | AATAAATAACAAAGATGACA+AGG | - | chr8_3:18557771-18557790 | None:intergenic | 20.0% |
| !!! | TGTTATTTATTTTGAATCCA+AGG | + | chr8_3:18557780-18557799 | Msa1280370:intron | 20.0% |
| !! | TGAATCAATAATAGAAATTG+TGG | + | chr8_3:18558323-18558342 | Msa1280370:CDS | 20.0% |
| !!! | ATGATTGTAAATCTGAATTT+TGG | + | chr8_3:18558714-18558733 | Msa1280370:intron | 20.0% |
| !! | TTCTATAAATAAATTTGACC+TGG | + | chr8_3:18559127-18559146 | Msa1280370:three_prime_UTR | 20.0% |
| !! | ATAAATGCTGAATCTTTTAG+AGG | + | chr8_3:18556209-18556228 | Msa1280370:CDS | 25.0% |
| !! | AAAATTGTTTCTTCTACAAC+AGG | + | chr8_3:18556301-18556320 | Msa1280370:CDS | 25.0% |
| !! | TATTTTCAAAAGTTGTTCTC+TGG | - | chr8_3:18556461-18556480 | None:intergenic | 25.0% |
| ! | ATAACAATAAAGTTCATCCT+TGG | + | chr8_3:18556494-18556513 | Msa1280370:intron | 25.0% |
| !! | CAATTTAATTTCTTTGGTTG+TGG | + | chr8_3:18556645-18556664 | Msa1280370:CDS | 25.0% |
| ! | GGAAAACTGTAAAAAATTAC+TGG | + | chr8_3:18556840-18556859 | Msa1280370:CDS | 25.0% |
| ! | GTTTCAAAAAATTTCAGCTT+TGG | - | chr8_3:18557036-18557055 | None:intergenic | 25.0% |
| !!! | TTCTGGTTTTCTGTTATTTT+TGG | + | chr8_3:18557197-18557216 | Msa1280370:intron | 25.0% |
| !!! | TCTGGTTTTCTGTTATTTTT+GGG | + | chr8_3:18557198-18557217 | Msa1280370:intron | 25.0% |
| ! | TGTAATATACTAGATTCTCA+TGG | + | chr8_3:18557373-18557392 | Msa1280370:intron | 25.0% |
| !!! | TCCATTTGTTTTTCATTCAA+AGG | + | chr8_3:18557936-18557955 | Msa1280370:CDS | 25.0% |
| !!! | ATTTGTTTTTCATTCAAAGG+CGG | + | chr8_3:18557939-18557958 | Msa1280370:CDS | 25.0% |
| ! | ATCTTCAAACCATAAATGTT+TGG | + | chr8_3:18558145-18558164 | Msa1280370:CDS | 25.0% |
| ! | AAACAACTATTGACAAATCA+AGG | + | chr8_3:18558906-18558925 | Msa1280370:three_prime_UTR | 25.0% |
| ! | AACAACTATTGACAAATCAA+GGG | + | chr8_3:18558907-18558926 | Msa1280370:three_prime_UTR | 25.0% |
| !!! | GTTCTAAAGTTTCATGTATA+AGG | + | chr8_3:18558987-18559006 | Msa1280370:three_prime_UTR | 25.0% |
| ! | CTTCATGAACAAATTAAACT+CGG | + | chr8_3:18559171-18559190 | Msa1280370:three_prime_UTR | 25.0% |
| !! | AGTGTTTTTATTCTGGCAAT+GGG | + | chr8_3:18556111-18556130 | Msa1280370:five_prime_UTR | 30.0% |
| ! | CGAGAGAAAATTTTCATCTT+TGG | - | chr8_3:18556182-18556201 | None:intergenic | 30.0% |
| ! | AAGATGAAAATTTTCTCTCG+AGG | + | chr8_3:18556182-18556201 | Msa1280370:exon | 30.0% |
| ! | AGATGAAAATTTTCTCTCGA+GGG | + | chr8_3:18556183-18556202 | Msa1280370:exon | 30.0% |
| ! | AAGAAACAATTTTTCTACCG+AGG | - | chr8_3:18556294-18556313 | None:intergenic | 30.0% |
| ! | ATTTATTCTTTTGCATTCCC+AGG | + | chr8_3:18556543-18556562 | Msa1280370:intron | 30.0% |
| CTCAAAAACTAAATGATCCT+GGG | - | chr8_3:18556563-18556582 | None:intergenic | 30.0% | |
| CTCCTTTGTTGAAATTGATT+TGG | + | chr8_3:18556587-18556606 | Msa1280370:CDS | 30.0% | |
| AGCCAAATCAATTTCAACAA+AGG | - | chr8_3:18556592-18556611 | None:intergenic | 30.0% | |
| TTAATTTCTTTGGTTGTGGA+TGG | + | chr8_3:18556649-18556668 | Msa1280370:CDS | 30.0% | |
| TAATTTCTTTGGTTGTGGAT+GGG | + | chr8_3:18556650-18556669 | Msa1280370:CDS | 30.0% | |
| ! | GTGTGAATTTTTAACAGATG+CGG | + | chr8_3:18556672-18556691 | Msa1280370:CDS | 30.0% |
| ! | GTTTTCAGTTTACTTAGGAA+AGG | - | chr8_3:18556718-18556737 | None:intergenic | 30.0% |
| AATCAGTTCATTTGCTTCTT+CGG | - | chr8_3:18556893-18556912 | None:intergenic | 30.0% | |
| ACATGTAATTCTTTCAACGT+AGG | - | chr8_3:18557003-18557022 | None:intergenic | 30.0% | |
| ACAGATATAAATACAGTGCA+AGG | - | chr8_3:18557263-18557282 | None:intergenic | 30.0% | |
| TCATGGATATCATTACATCT+TGG | + | chr8_3:18557390-18557409 | Msa1280370:intron | 30.0% | |
| ! | TCTGTTTTATCATGAAAGCA+CGG | - | chr8_3:18557910-18557929 | None:intergenic | 30.0% |
| GCCTTTGAATGAAAAACAAA+TGG | - | chr8_3:18557940-18557959 | None:intergenic | 30.0% | |
| ! | TTTGAAGATTTTCAACGAAC+GGG | - | chr8_3:18558134-18558153 | None:intergenic | 30.0% |
| ! | GTTTGAAGATTTTCAACGAA+CGG | - | chr8_3:18558135-18558154 | None:intergenic | 30.0% |
| GGAACAATACCAAACATTTA+TGG | - | chr8_3:18558157-18558176 | None:intergenic | 30.0% | |
| AATAGAAATTGTGGCTAAAG+AGG | + | chr8_3:18558332-18558351 | Msa1280370:CDS | 30.0% | |
| AATAGAATCTCACCTTCATT+TGG | - | chr8_3:18558366-18558385 | None:intergenic | 30.0% | |
| ! | TAAGCTTGAAAGCTTTTACT+CGG | + | chr8_3:18558422-18558441 | Msa1280370:CDS | 30.0% |
| ! | TAAAGTACCAGATGAATTGA+AGG | + | chr8_3:18558527-18558546 | Msa1280370:CDS | 30.0% |
| ATCTGTCATTATACTTACTC+AGG | - | chr8_3:18558622-18558641 | None:intergenic | 30.0% | |
| AAGGAGACATTAGCAAATAT+TGG | - | chr8_3:18558647-18558666 | None:intergenic | 30.0% | |
| ! | ATTTTGGACTTACCAAAGTT+TGG | + | chr8_3:18558730-18558749 | Msa1280370:intron | 30.0% |
| ! | TTTTGGACTTACCAAAGTTT+GGG | + | chr8_3:18558731-18558750 | Msa1280370:intron | 30.0% |
| TAAAACAGGTCAAACTTTGA+AGG | - | chr8_3:18558796-18558815 | None:intergenic | 30.0% | |
| ACGTATCTAAAAGAATTGTG+TGG | + | chr8_3:18558965-18558984 | Msa1280370:three_prime_UTR | 30.0% | |
| CCTTATACATGAAACAATTC+TGG | - | chr8_3:18559077-18559096 | None:intergenic | 30.0% | |
| CCAGAATTGTTTCATGTATA+AGG | + | chr8_3:18559074-18559093 | Msa1280370:three_prime_UTR | 30.0% | |
| !! | GAGTGTTTTTATTCTGGCAA+TGG | + | chr8_3:18556110-18556129 | Msa1280370:five_prime_UTR | 35.0% |
| ATGTAAACTTCAGTCAGAGA+CGG | - | chr8_3:18556149-18556168 | None:intergenic | 35.0% | |
| CTCTGACTGAAGTTTACATA+TGG | + | chr8_3:18556150-18556169 | Msa1280370:five_prime_UTR | 35.0% | |
| ! | GATGAAAATTTTCTCTCGAG+GGG | + | chr8_3:18556184-18556203 | Msa1280370:exon | 35.0% |
| GACCAACTGATCATTTGAAT+CGG | - | chr8_3:18556249-18556268 | None:intergenic | 35.0% | |
| GTATGGAAAAAATCGCATAG+AGG | + | chr8_3:18556392-18556411 | Msa1280370:intron | 35.0% | |
| CCTCAAAAACTAAATGATCC+TGG | - | chr8_3:18556564-18556583 | None:intergenic | 35.0% | |
| !!! | CCAGGATCATTTAGTTTTTG+AGG | + | chr8_3:18556561-18556580 | Msa1280370:intron | 35.0% |
| !! | GAAATTGATTTGGCTCAAGT+CGG | + | chr8_3:18556597-18556616 | Msa1280370:CDS | 35.0% |
| AGGAAAGGAAGTAAATGAGA+AGG | - | chr8_3:18556703-18556722 | None:intergenic | 35.0% | |
| ! | CCAGTGTTTTCAGTTTACTT+AGG | - | chr8_3:18556723-18556742 | None:intergenic | 35.0% |
| CCTAAGTAAACTGAAAACAC+TGG | + | chr8_3:18556720-18556739 | Msa1280370:CDS | 35.0% | |
| GCGGAACTGTAATTCTATTA+AGG | + | chr8_3:18556747-18556766 | Msa1280370:CDS | 35.0% | |
| AATACAAAGATTGGACCTCA+AGG | + | chr8_3:18556781-18556800 | Msa1280370:CDS | 35.0% | |
| !!! | ATAGCTTTTTCAGCAATGGA+AGG | - | chr8_3:18556816-18556835 | None:intergenic | 35.0% |
| TTCCATTGCTGAAAAAGCTA+TGG | + | chr8_3:18556815-18556834 | Msa1280370:CDS | 35.0% | |
| TCCATTGCTGAAAAAGCTAT+GGG | + | chr8_3:18556816-18556835 | Msa1280370:CDS | 35.0% | |
| ! | AATCTGAAGTGCATTTATCC+TGG | + | chr8_3:18556958-18556977 | Msa1280370:CDS | 35.0% |
| ! | ATCTGAAGTGCATTTATCCT+GGG | + | chr8_3:18556959-18556978 | Msa1280370:CDS | 35.0% |
| ! | GAGATAGTTTTCCATCAAAC+CGG | + | chr8_3:18557073-18557092 | Msa1280370:CDS | 35.0% |
| AATCGCAAAATTGTAACACG+AGG | - | chr8_3:18557238-18557257 | None:intergenic | 35.0% | |
| TAGACACAATGTCTGATCAT+TGG | - | chr8_3:18557322-18557341 | None:intergenic | 35.0% | |
| AATGATCAGACATTGTGTCT+AGG | + | chr8_3:18557321-18557340 | Msa1280370:intron | 35.0% | |
| GCATGATATGTATGATGCAT+TGG | + | chr8_3:18557343-18557362 | Msa1280370:intron | 35.0% | |
| TGGATATCATTACATCTTGG+AGG | + | chr8_3:18557393-18557412 | Msa1280370:intron | 35.0% | |
| TTGTGAGTGCAACTAAATCA+AGG | - | chr8_3:18557440-18557459 | None:intergenic | 35.0% | |
| AATGATTTCCTCTCTCTTGA+TGG | + | chr8_3:18557595-18557614 | Msa1280370:intron | 35.0% | |
| ATGATTTCCTCTCTCTTGAT+GGG | + | chr8_3:18557596-18557615 | Msa1280370:intron | 35.0% | |
| AAATTTACCCATCAAGAGAG+AGG | - | chr8_3:18557606-18557625 | None:intergenic | 35.0% | |
| GAAGCAAAGATGATTGATCA+AGG | + | chr8_3:18557841-18557860 | Msa1280370:CDS | 35.0% | |
| ! | TAAAGTCTTGTCACAGCTTA+AGG | + | chr8_3:18558047-18558066 | Msa1280370:CDS | 35.0% |
| ! | AAAGTCTTGTCACAGCTTAA+GGG | + | chr8_3:18558048-18558067 | Msa1280370:CDS | 35.0% |
| AAATCCTATGGATTCAAGCT+GGG | - | chr8_3:18558094-18558113 | None:intergenic | 35.0% | |
| ! | ATGGTGTCAAGTTTCTCAAA+CGG | - | chr8_3:18558179-18558198 | None:intergenic | 35.0% |
| TGTCTTTCTCCAAACTGAAA+AGG | + | chr8_3:18558205-18558224 | Msa1280370:CDS | 35.0% | |
| ! | AACATCAAGCCTTTTCAGTT+TGG | - | chr8_3:18558217-18558236 | None:intergenic | 35.0% |
| AGGCTTGATGTTAAAGATTG+TGG | + | chr8_3:18558225-18558244 | Msa1280370:CDS | 35.0% | |
| ! | TTTCAGTACGCTCAAAGTTT+TGG | - | chr8_3:18558283-18558302 | None:intergenic | 35.0% |
| TGAAGGTGAGATTCTATTCA+CGG | + | chr8_3:18558368-18558387 | Msa1280370:CDS | 35.0% | |
| GAGTAAAAGCTTTCAAGCTT+AGG | - | chr8_3:18558423-18558442 | None:intergenic | 35.0% | |
| ! | AAGCTTGAAAGCTTTTACTC+GGG | + | chr8_3:18558423-18558442 | Msa1280370:CDS | 35.0% |
| ATTGTCACCTTCAATTCATC+TGG | - | chr8_3:18558537-18558556 | None:intergenic | 35.0% | |
| GAATTGAAGGTGACAATAGA+TGG | + | chr8_3:18558540-18558559 | Msa1280370:CDS | 35.0% | |
| AATCATGCAACAGATTGATG+AGG | + | chr8_3:18558593-18558612 | Msa1280370:CDS | 35.0% | |
| CATCAATAACAGTTGAAGGA+AGG | - | chr8_3:18558666-18558685 | None:intergenic | 35.0% | |
| CTTCCTTCAACTGTTATTGA+TGG | + | chr8_3:18558664-18558683 | Msa1280370:intron | 35.0% | |
| AGACCATCAATAACAGTTGA+AGG | - | chr8_3:18558670-18558689 | None:intergenic | 35.0% | |
| TGGATTATGAACCCAAACTT+TGG | - | chr8_3:18558745-18558764 | None:intergenic | 35.0% | |
| ATTAGCAATTTATCCTCGCT+TGG | - | chr8_3:18558881-18558900 | None:intergenic | 35.0% | |
| CGAGGATAAATTGCTAATCA+AGG | + | chr8_3:18558883-18558902 | Msa1280370:three_prime_UTR | 35.0% | |
| TATTGACAAATCAAGGGCTT+CGG | + | chr8_3:18558913-18558932 | Msa1280370:three_prime_UTR | 35.0% | |
| !! | TGTTTTCTGGAAATACATCC+AGG | - | chr8_3:18559148-18559167 | None:intergenic | 35.0% |
| !!! | GTTCATGAAGCATTGTTTTC+TGG | - | chr8_3:18559161-18559180 | None:intergenic | 35.0% |
| ! | GGCTTTGTATGTATTTCTAC+TGG | + | chr8_3:18559192-18559211 | Msa1280370:three_prime_UTR | 35.0% |
| !! | AGCCTGGAGTGTTTTTATTC+TGG | + | chr8_3:18556104-18556123 | Msa1280370:five_prime_UTR | 40.0% |
| TGCCAGAATAAAAACACTCC+AGG | - | chr8_3:18556109-18556128 | None:intergenic | 40.0% | |
| CATTTGAATCGGACAAAGCT+TGG | - | chr8_3:18556238-18556257 | None:intergenic | 40.0% | |
| GTCCGATTCAAATGATCAGT+TGG | + | chr8_3:18556244-18556263 | Msa1280370:CDS | 40.0% | |
| CAATGATGATCTTAACGCCT+CGG | + | chr8_3:18556274-18556293 | Msa1280370:CDS | 40.0% | |
| AAATTGCAGAAACACCAGTC+CGG | - | chr8_3:18556631-18556650 | None:intergenic | 40.0% | |
| AACTGAAAACACTGGAAGTG+CGG | + | chr8_3:18556728-18556747 | Msa1280370:CDS | 40.0% | |
| !!! | ACCCATAGCTTTTTCAGCAA+TGG | - | chr8_3:18556820-18556839 | None:intergenic | 40.0% |
| ATTGCTGAAAAAGCTATGGG+TGG | + | chr8_3:18556819-18556838 | Msa1280370:CDS | 40.0% | |
| ! | TCTGAAGTGCATTTATCCTG+GGG | + | chr8_3:18556960-18556979 | Msa1280370:CDS | 40.0% |
| TACCTTATCAAGCGAGACAA+AGG | - | chr8_3:18557103-18557122 | None:intergenic | 40.0% | |
| ! | CAGAAAATGCAAAAAGTGCG+AGG | - | chr8_3:18557182-18557201 | None:intergenic | 40.0% |
| !! | CTCGCACTTTTTGCATTTTC+TGG | + | chr8_3:18557180-18557199 | Msa1280370:intron | 40.0% |
| AAGATGACAAGGCCAATATC+AGG | - | chr8_3:18557760-18557779 | None:intergenic | 40.0% | |
| !! | ATCGGAGGGTGTTTAATTCT+TGG | - | chr8_3:18557885-18557904 | None:intergenic | 40.0% |
| ! | TATCATGAAAGCACGGCAAT+CGG | - | chr8_3:18557903-18557922 | None:intergenic | 40.0% |
| AGAGGGGAATATCTCTTTGA+AGG | - | chr8_3:18558004-18558023 | None:intergenic | 40.0% | |
| ACTTTAGTACAGTCAACGTC+AGG | - | chr8_3:18558033-18558052 | None:intergenic | 40.0% | |
| AATCCTATGGATTCAAGCTG+GGG | - | chr8_3:18558093-18558112 | None:intergenic | 40.0% | |
| CAAATCCTATGGATTCAAGC+TGG | - | chr8_3:18558095-18558114 | None:intergenic | 40.0% | |
| ! | TGGTGTCAAGTTTCTCAAAC+GGG | - | chr8_3:18558178-18558197 | None:intergenic | 40.0% |
| TTGGAGAAAGACACAATGGA+TGG | - | chr8_3:18558198-18558217 | None:intergenic | 40.0% | |
| CAGTTTGGAGAAAGACACAA+TGG | - | chr8_3:18558202-18558221 | None:intergenic | 40.0% | |
| GAGGAAGATGAACCAAATGA+AGG | + | chr8_3:18558351-18558370 | Msa1280370:CDS | 40.0% | |
| GAGCTTAGTATTGTGACTCT+TGG | + | chr8_3:18558390-18558409 | Msa1280370:CDS | 40.0% | |
| ! | AGCTTGAAAGCTTTTACTCG+GGG | + | chr8_3:18558424-18558443 | Msa1280370:CDS | 40.0% |
| CGTGAATGACACTTCTTTCA+AGG | - | chr8_3:18558472-18558491 | None:intergenic | 40.0% | |
| ! | ACCACAAAAGTTTTCCGTGT+TGG | + | chr8_3:18558501-18558520 | Msa1280370:CDS | 40.0% |
| ! | ACCAACACGGAAAACTTTTG+TGG | - | chr8_3:18558505-18558524 | None:intergenic | 40.0% |
| CTGGTACTTTATCACCAACA+CGG | - | chr8_3:18558518-18558537 | None:intergenic | 40.0% | |
| TGACAATAGATGGAGTCGTT+TGG | + | chr8_3:18558550-18558569 | Msa1280370:CDS | 40.0% | |
| GACAATAGATGGAGTCGTTT+GGG | + | chr8_3:18558551-18558570 | Msa1280370:CDS | 40.0% | |
| GAAAAAGCAGCATCTATCTG+TGG | - | chr8_3:18558772-18558791 | None:intergenic | 40.0% | |
| !!! | TTTGACCTGTTTTAGCTTGC+TGG | + | chr8_3:18558802-18558821 | Msa1280370:intron | 40.0% |
| TAGTTCCAGCAAGCTAAAAC+AGG | - | chr8_3:18558810-18558829 | None:intergenic | 40.0% | |
| AAAGCCTTCCTGCAGATATA+CGG | + | chr8_3:18559023-18559042 | Msa1280370:three_prime_UTR | 40.0% | |
| !! | ATTTCTACTGGTGCTATGCA+TGG | + | chr8_3:18559204-18559223 | Msa1280370:three_prime_UTR | 40.0% |
| AATTGCAGAAACACCAGTCC+GGG | - | chr8_3:18556630-18556649 | None:intergenic | 45.0% | |
| ATTGGACCTCAAGGAACTCT+TGG | + | chr8_3:18556790-18556809 | Msa1280370:CDS | 45.0% | |
| CAGTTCATTTGCTTCTTCGG+TGG | - | chr8_3:18556890-18556909 | None:intergenic | 45.0% | |
| AGCCTTTGTCTCGCTTGATA+AGG | + | chr8_3:18557098-18557117 | Msa1280370:CDS | 45.0% | |
| ! | ATGCAAAAAGTGCGAGGCAA+CGG | - | chr8_3:18557176-18557195 | None:intergenic | 45.0% |
| TACCTAGTGTCAGCACATTC+AGG | - | chr8_3:18557816-18557835 | None:intergenic | 45.0% | |
| ACCTGGTACGAAATACCTTG+TGG | + | chr8_3:18557966-18557985 | Msa1280370:CDS | 45.0% | |
| ! | ACCACAAGGTATTTCGTACC+AGG | - | chr8_3:18557970-18557989 | None:intergenic | 45.0% |
| TCAACGTCAGGTGTTTGAGA+GGG | - | chr8_3:18558021-18558040 | None:intergenic | 45.0% | |
| CTTGTCACAGCTTAAGGGAT+TGG | + | chr8_3:18558053-18558072 | Msa1280370:CDS | 45.0% | |
| ATCCTATGGATTCAAGCTGG+GGG | - | chr8_3:18558092-18558111 | None:intergenic | 45.0% | |
| CATAGGATTTGAACGCTCCT+GGG | + | chr8_3:18558104-18558123 | Msa1280370:CDS | 45.0% | |
| !! | GCTCAAAGTTTTGGCAGTAG+AGG | - | chr8_3:18558274-18558293 | None:intergenic | 45.0% |
| ATAGATGGAGTCGTTTGGGA+AGG | + | chr8_3:18558555-18558574 | Msa1280370:CDS | 45.0% | |
| CAGCATCTATCTGTGGTGAT+TGG | - | chr8_3:18558765-18558784 | None:intergenic | 45.0% | |
| TGAAGGATCAATGAGACTCG+AGG | + | chr8_3:18558852-18558871 | Msa1280370:intron | 45.0% | |
| AAGCCTTCCTGCAGATATAC+GGG | + | chr8_3:18559024-18559043 | Msa1280370:three_prime_UTR | 45.0% | |
| !! | ACAAAGGCTTGCCGGTTTGA+TGG | - | chr8_3:18557087-18557106 | None:intergenic | 50.0% |
| ATTCAGGCTCGGAGTAACCT+TGG | - | chr8_3:18557800-18557819 | None:intergenic | 50.0% | |
| AGTGTCAGCACATTCAGGCT+CGG | - | chr8_3:18557811-18557830 | None:intergenic | 50.0% | |
| ! | AGCCTGAATGTGCTGACACT+AGG | + | chr8_3:18557811-18557830 | Msa1280370:CDS | 50.0% |
| ! | ATGAAAGCACGGCAATCGGA+GGG | - | chr8_3:18557899-18557918 | None:intergenic | 50.0% |
| CAACGTCAGGTGTTTGAGAG+GGG | - | chr8_3:18558020-18558039 | None:intergenic | 50.0% | |
| GTCAACGTCAGGTGTTTGAG+AGG | - | chr8_3:18558022-18558041 | None:intergenic | 50.0% | |
| !! | CCAGGAGCGTTCAAATCCTA+TGG | - | chr8_3:18558106-18558125 | None:intergenic | 50.0% |
| CCATAGGATTTGAACGCTCC+TGG | + | chr8_3:18558103-18558122 | Msa1280370:CDS | 50.0% | |
| AGCCTTCCTGCAGATATACG+GGG | + | chr8_3:18559025-18559044 | Msa1280370:three_prime_UTR | 50.0% | |
| GGAAGGCCAAGAGTTCCTTG+AGG | - | chr8_3:18556799-18556818 | None:intergenic | 55.0% | |
| CAAGCGAGACAAAGGCTTGC+CGG | - | chr8_3:18557095-18557114 | None:intergenic | 55.0% | |
| ! | CATGAAAGCACGGCAATCGG+AGG | - | chr8_3:18557900-18557919 | None:intergenic | 55.0% |
| CATTCAAAGGCGGCACTACC+TGG | + | chr8_3:18557949-18557968 | Msa1280370:CDS | 55.0% | |
| AGGCACTATGTCGCACCACA+AGG | - | chr8_3:18557984-18558003 | None:intergenic | 55.0% | |
| CTCCCCCAGCTTGAATCCAT+AGG | + | chr8_3:18558087-18558106 | Msa1280370:CDS | 55.0% | |
| TTCAACGAACGGGTCTACCC+AGG | - | chr8_3:18558124-18558143 | None:intergenic | 55.0% | |
| AGACTCGAGGATTCCAAGCG+AGG | + | chr8_3:18558865-18558884 | Msa1280370:three_prime_UTR | 55.0% | |
| GCCTTCCTGCAGATATACGG+GGG | + | chr8_3:18559026-18559045 | Msa1280370:three_prime_UTR | 55.0% | |
| TCCCCCGTATATCTGCAGGA+AGG | - | chr8_3:18559030-18559049 | None:intergenic | 55.0% | |
| CTTCTCCCCCGTATATCTGC+AGG | - | chr8_3:18559034-18559053 | None:intergenic | 55.0% | |
| GCTCAAGTCGGAGACTGTCC+CGG | + | chr8_3:18556609-18556628 | Msa1280370:CDS | 60.0% | |
| !! | CACTCTAGAATGCGCACCCC+AGG | - | chr8_3:18556979-18556998 | None:intergenic | 60.0% |
| ! | CTGGGGTGCGCATTCTAGAG+TGG | + | chr8_3:18556977-18556996 | Msa1280370:CDS | 60.0% |
| AGTCGGAGACTGTCCCGGAC+TGG | + | chr8_3:18556614-18556633 | Msa1280370:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 18556097 | 18559275 | 18556097 | ID=Msa1280370;Name=Msa1280370 |
| chr8_3 | mRNA | 18556097 | 18559275 | 18556097 | ID=Msa1280370-mRNA-1;Parent=Msa1280370;Name=Msa1280370-mRNA-1;_AED=0.41;_eAED=0.41;_QI=88|1|1|1|0.66|0.75|4|419|504 |
| chr8_3 | exon | 18556097 | 18556322 | 18556097 | ID=Msa1280370-mRNA-1:exon:7069;Parent=Msa1280370-mRNA-1 |
| chr8_3 | exon | 18556565 | 18557119 | 18556565 | ID=Msa1280370-mRNA-1:exon:7070;Parent=Msa1280370-mRNA-1 |
| chr8_3 | exon | 18557802 | 18558623 | 18557802 | ID=Msa1280370-mRNA-1:exon:7071;Parent=Msa1280370-mRNA-1 |
| chr8_3 | exon | 18558857 | 18559275 | 18558857 | ID=Msa1280370-mRNA-1:exon:7072;Parent=Msa1280370-mRNA-1 |
| chr8_3 | five_prime_UTR | 18556097 | 18556184 | 18556097 | ID=Msa1280370-mRNA-1:five_prime_utr;Parent=Msa1280370-mRNA-1 |
| chr8_3 | CDS | 18556185 | 18556322 | 18556185 | ID=Msa1280370-mRNA-1:cds;Parent=Msa1280370-mRNA-1 |
| chr8_3 | CDS | 18556565 | 18557119 | 18556565 | ID=Msa1280370-mRNA-1:cds;Parent=Msa1280370-mRNA-1 |
| chr8_3 | CDS | 18557802 | 18558623 | 18557802 | ID=Msa1280370-mRNA-1:cds;Parent=Msa1280370-mRNA-1 |
| chr8_3 | three_prime_UTR | 18558857 | 18559275 | 18558857 | ID=Msa1280370-mRNA-1:three_prime_utr;Parent=Msa1280370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
