AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169780 MtrunA17_Chr7g0262841 94.575 424 23 0 1 424 156 579 0.0 828
Msa1169780 MtrunA17_Chr2g0327991 39.000 400 232 2 9 408 437 824 2.91e-99 314
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169780 AT3G09450.1 39.899 396 226 5 6 397 384 771 1.70e-97 308
Msa1169780 AT2G28780.1 37.292 421 246 4 8 422 386 794 2.19e-94 301

Find 88 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAAGATTTGTGGATTTA+AGG 0.118879 7_4:-62850481 Msa1169780:CDS
CTGAAATGGAGCCAAATTTC+TGG 0.203476 7_4:-62850055 Msa1169780:CDS
AAATAAAAGAACTACTTATA+TGG 0.256780 7_4:-62849527 Msa1169780:CDS
TTGAAGTTTGTTTGACTTGC+GGG 0.279387 7_4:+62849498 None:intergenic
TATAGTACCCCGACTCAATT+TGG 0.282417 7_4:-62850338 Msa1169780:CDS
ACCTTAAATCCACAAATCTT+TGG 0.287928 7_4:+62850480 None:intergenic
AGTAGAATGTATGGGGAATC+TGG 0.291832 7_4:-62850410 Msa1169780:CDS
AATGGTACGAACCAGAAATT+TGG 0.300415 7_4:+62850044 None:intergenic
GGGCAATTTCGACAGTTATA+GGG 0.304373 7_4:-62850388 Msa1169780:CDS
ATCTCAATGCAGACACATTT+AGG 0.311938 7_4:-62849737 Msa1169780:CDS
GGGGCAATTTCGACAGTTAT+AGG 0.317765 7_4:-62850389 Msa1169780:CDS
ATGATAGGGATAATGCATAT+TGG 0.349199 7_4:-62850625 Msa1169780:CDS
AAGCATCTCCTCATCTTTGT+TGG 0.382037 7_4:+62849632 None:intergenic
CAATCTGCTTAATGCAATCT+TGG 0.385334 7_4:+62850192 None:intergenic
GCTAGAGTTGCAGCTCTTGA+GGG 0.389237 7_4:+62850248 None:intergenic
TCCTTGGTTTGATATATGAT+AGG 0.391420 7_4:-62850640 Msa1169780:CDS
TTTAAGTCCTCTCTGTCATT+AGG 0.398749 7_4:-62850674 Msa1169780:CDS
TTAGGCTTTGCCGTGTTCCT+TGG 0.401857 7_4:-62850656 Msa1169780:CDS
CTCAGGCAAAGTAGAATGTA+TGG 0.402439 7_4:-62850419 Msa1169780:CDS
TGATAGGGATAATGCATATT+GGG 0.402750 7_4:-62850624 Msa1169780:CDS
ATTTACAGCAGAAGCTGAAA+TGG 0.417428 7_4:-62850069 Msa1169780:CDS
TATTTCTCTCATCAAGCTAC+TGG 0.426451 7_4:+62849566 None:intergenic
AAAGATCAAGCTTTGGTGGC+TGG 0.427921 7_4:+62850700 None:intergenic
GTTGCAAACGCACGAGGAAC+AGG 0.431175 7_4:-62850548 Msa1169780:CDS
TGCTAGAGTTGCAGCTCTTG+AGG 0.437675 7_4:+62850247 None:intergenic
GACGACGTATCTCTTTCGTT+AGG 0.445242 7_4:+62850158 None:intergenic
TGCCCCAATATTGAAAAGCT+TGG 0.446043 7_4:-62849847 Msa1169780:CDS
AATAAAAGAACTACTTATAT+GGG 0.456542 7_4:-62849526 Msa1169780:CDS
AAGATCAAGCTTTGGTGGCT+GGG 0.457294 7_4:+62850701 None:intergenic
CCTTGGTTTGATATATGATA+GGG 0.460011 7_4:-62850639 Msa1169780:CDS
ATAGGGGCCTTGTTGATCCT+TGG 0.460671 7_4:-62850371 Msa1169780:CDS
TAGCAACTCCAAATTGAGTC+GGG 0.464180 7_4:+62850330 None:intergenic
CTGTAGCAGGTAGTATGAAA+TGG 0.464656 7_4:+62850026 None:intergenic
TCAATTTGGAGTTGCTAGAA+TGG 0.465771 7_4:-62850324 Msa1169780:CDS
TAAATGCAAAGATCAAGCTT+TGG 0.470566 7_4:+62850693 None:intergenic
TACCTGCTACAGCAATATGC+TGG 0.475447 7_4:-62850015 Msa1169780:CDS
ACGACGTATCTCTTTCGTTA+GGG 0.475646 7_4:+62850159 None:intergenic
AATGGAGCATGTCTCACAAT+TGG 0.477649 7_4:-62849946 Msa1169780:CDS
GGTTCTTAGCTCTTATACCA+TGG 0.486589 7_4:-62850460 Msa1169780:CDS
GTAGAATGTATGGGGAATCT+GGG 0.489062 7_4:-62850409 Msa1169780:CDS
CAACATCTAGAGGAAATTGC+TGG 0.490184 7_4:-62849666 Msa1169780:CDS
ATGCAAAGATCAAGCTTTGG+TGG 0.499399 7_4:+62850696 None:intergenic
AGAATGGCAGAGGCTACAAT+AGG 0.502981 7_4:-62850308 Msa1169780:CDS
GATATTGAACAGAGATGAAG+AGG 0.505008 7_4:-62849715 Msa1169780:CDS
CAGCAATTTCCTCTAGATGT+TGG 0.511945 7_4:+62849667 None:intergenic
TTTGAAGTTTGTTTGACTTG+CGG 0.514256 7_4:+62849497 None:intergenic
TCCCAGCATATTGCTGTAGC+AGG 0.515445 7_4:+62850013 None:intergenic
ACGAGGAACAGGAACAGCTA+TGG 0.522977 7_4:-62850537 Msa1169780:CDS
ACAGCTATGGGATCAATCTA+CGG 0.523889 7_4:-62850524 Msa1169780:CDS
CAATTTCCTCTAGATGTTGG+AGG 0.527126 7_4:+62849670 None:intergenic
TGGATGGATATTCAAGGTCA+AGG 0.528602 7_4:-62849903 Msa1169780:CDS
ATTGCAATTAGTTTCGTGAC+TGG 0.533410 7_4:-62850590 Msa1169780:CDS
CTCTTTCCTCCAACATCTAG+AGG 0.537612 7_4:-62849676 Msa1169780:CDS
GTTCTTAGCTCTTATACCAT+GGG 0.540055 7_4:-62850459 Msa1169780:CDS
CGAGGAACAGGAACAGCTAT+GGG 0.541244 7_4:-62850536 Msa1169780:CDS
GGCAATTTCGACAGTTATAG+GGG 0.544984 7_4:-62850387 Msa1169780:CDS
CTAGAGTTGCAGCTCTTGAG+GGG 0.547420 7_4:+62850249 None:intergenic
GCAATCTTGGAGTGTTCTGA+AGG 0.547626 7_4:+62850205 None:intergenic
TCAGGCAAAGTAGAATGTAT+GGG 0.550366 7_4:-62850418 Msa1169780:CDS
GTAATTTGGATGGATATTCA+AGG 0.552135 7_4:-62849909 Msa1169780:CDS
ATATGCTGGGATCTCTATCA+AGG 0.556800 7_4:-62850001 Msa1169780:CDS
AAAAGATGGAGTAATTTGGA+TGG 0.561145 7_4:-62849919 Msa1169780:CDS
CAGCTATGGGATCAATCTAC+GGG 0.561809 7_4:-62850523 Msa1169780:CDS
AGGGATAATGCATATTGGGC+GGG 0.562602 7_4:-62850620 Msa1169780:CDS
TGGAGTTGCTAGAATGGCAG+AGG 0.563730 7_4:-62850318 Msa1169780:CDS
GGATGGATATTCAAGGTCAA+GGG 0.566079 7_4:-62849902 Msa1169780:CDS
GGGCCTTGTTGATCCTTGGT+AGG 0.569678 7_4:-62850367 Msa1169780:CDS
CTAGCAACTCCAAATTGAGT+CGG 0.575057 7_4:+62850329 None:intergenic
ACCTGCTACAGCAATATGCT+GGG 0.575756 7_4:-62850014 Msa1169780:CDS
CGACGTATCTCTTTCGTTAG+GGG 0.576170 7_4:+62850160 None:intergenic
TAGATTTACTATGTTTGCAG+AGG 0.581958 7_4:+62849453 None:intergenic
TCTTTCGTTAGGGGTAGTCA+TGG 0.603069 7_4:+62850169 None:intergenic
TGAAGTTTGTTTGACTTGCG+GGG 0.604383 7_4:+62849499 None:intergenic
GCGTTTGCAACTGAGAATGT+TGG 0.613666 7_4:+62850560 None:intergenic
CCCTATCATATATCAAACCA+AGG 0.614752 7_4:+62850639 None:intergenic
TACTATAGTTCTTCCTACCA+AGG 0.620979 7_4:+62850354 None:intergenic
CAGGCAAAGTAGAATGTATG+GGG 0.624002 7_4:-62850417 Msa1169780:CDS
AACTCTTACCAACAAAGATG+AGG 0.633114 7_4:-62849640 Msa1169780:CDS
TCTTGTGACTCGAGATCGTG+AGG 0.636201 7_4:+62849762 None:intergenic
TTCTCAGTTGCAAACGCACG+AGG 0.643217 7_4:-62850554 Msa1169780:CDS
AAAGAAGAGAAAATGACCCA+TGG 0.647913 7_4:+62850443 None:intergenic
TAGGGATAATGCATATTGGG+CGG 0.652201 7_4:-62850621 Msa1169780:CDS
ATATATCAAACCAAGGAACA+CGG 0.652287 7_4:+62850646 None:intergenic
GCTGGGATCTCTATCAAGGA+CGG 0.660564 7_4:-62849997 Msa1169780:CDS
CTTCCTACCAAGGATCAACA+AGG 0.665051 7_4:+62850364 None:intergenic
TAGAATGTATGGGGAATCTG+GGG 0.673349 7_4:-62850408 Msa1169780:CDS
AGCAACTCCAAATTGAGTCG+GGG 0.676322 7_4:+62850331 None:intergenic
GGCAAAGCCTAATGACAGAG+AGG 0.719901 7_4:+62850667 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAGAACTACTTATA+TGG - chr7_4:62850647-62850666 Msa1169780:CDS 15.0%
!! AATAAAAGAACTACTTATAT+GGG - chr7_4:62850648-62850667 Msa1169780:CDS 15.0%
!! AAATAAAAGAACTACTTATA+TGG - chr7_4:62850647-62850666 Msa1169780:CDS 15.0%
!! AATAAAAGAACTACTTATAT+GGG - chr7_4:62850648-62850667 Msa1169780:CDS 15.0%
!!! TTTTATTTCACTCTCAATCT+TGG + chr7_4:62850635-62850654 None:intergenic 25.0%
!!! TTTTATTTCACTCTCAATCT+TGG + chr7_4:62850635-62850654 None:intergenic 25.0%
TAAATGCAAAGATCAAGCTT+TGG + chr7_4:62849484-62849503 None:intergenic 30.0%
ATATATCAAACCAAGGAACA+CGG + chr7_4:62849531-62849550 None:intergenic 30.0%
! TCCTTGGTTTGATATATGAT+AGG - chr7_4:62849534-62849553 Msa1169780:CDS 30.0%
! CCTTGGTTTGATATATGATA+GGG - chr7_4:62849535-62849554 Msa1169780:CDS 30.0%
ATGATAGGGATAATGCATAT+TGG - chr7_4:62849549-62849568 Msa1169780:CDS 30.0%
TGATAGGGATAATGCATATT+GGG - chr7_4:62849550-62849569 Msa1169780:CDS 30.0%
! CTTCATTTTCCAAAGATTTG+TGG - chr7_4:62849685-62849704 Msa1169780:CDS 30.0%
TCCAAAGATTTGTGGATTTA+AGG - chr7_4:62849693-62849712 Msa1169780:CDS 30.0%
ACCTTAAATCCACAAATCTT+TGG + chr7_4:62849697-62849716 None:intergenic 30.0%
! TCATTTTCTCTTCTTTTCTC+AGG - chr7_4:62849738-62849757 Msa1169780:CDS 30.0%
CACAAAAAGATGGAGTAATT+TGG - chr7_4:62850251-62850270 Msa1169780:CDS 30.0%
AAAAGATGGAGTAATTTGGA+TGG - chr7_4:62850255-62850274 Msa1169780:CDS 30.0%
GTAATTTGGATGGATATTCA+AGG - chr7_4:62850265-62850284 Msa1169780:CDS 30.0%
! TTCCAAGCTTTTCAATATTG+GGG + chr7_4:62850332-62850351 None:intergenic 30.0%
! CTTCCAAGCTTTTCAATATT+GGG + chr7_4:62850333-62850352 None:intergenic 30.0%
! TCTTCCAAGCTTTTCAATAT+TGG + chr7_4:62850334-62850353 None:intergenic 30.0%
!! TTTGAAGTTTGTTTGACTTG+CGG + chr7_4:62850680-62850699 None:intergenic 30.0%
TAAATGCAAAGATCAAGCTT+TGG + chr7_4:62849484-62849503 None:intergenic 30.0%
ATATATCAAACCAAGGAACA+CGG + chr7_4:62849531-62849550 None:intergenic 30.0%
! TCCTTGGTTTGATATATGAT+AGG - chr7_4:62849534-62849553 Msa1169780:CDS 30.0%
! CCTTGGTTTGATATATGATA+GGG - chr7_4:62849535-62849554 Msa1169780:CDS 30.0%
ATGATAGGGATAATGCATAT+TGG - chr7_4:62849549-62849568 Msa1169780:CDS 30.0%
TGATAGGGATAATGCATATT+GGG - chr7_4:62849550-62849569 Msa1169780:CDS 30.0%
! CTTCATTTTCCAAAGATTTG+TGG - chr7_4:62849685-62849704 Msa1169780:CDS 30.0%
TCCAAAGATTTGTGGATTTA+AGG - chr7_4:62849693-62849712 Msa1169780:CDS 30.0%
ACCTTAAATCCACAAATCTT+TGG + chr7_4:62849697-62849716 None:intergenic 30.0%
! TCATTTTCTCTTCTTTTCTC+AGG - chr7_4:62849738-62849757 Msa1169780:CDS 30.0%
CACAAAAAGATGGAGTAATT+TGG - chr7_4:62850251-62850270 Msa1169780:CDS 30.0%
AAAAGATGGAGTAATTTGGA+TGG - chr7_4:62850255-62850274 Msa1169780:CDS 30.0%
GTAATTTGGATGGATATTCA+AGG - chr7_4:62850265-62850284 Msa1169780:CDS 30.0%
! TTCCAAGCTTTTCAATATTG+GGG + chr7_4:62850332-62850351 None:intergenic 30.0%
! CTTCCAAGCTTTTCAATATT+GGG + chr7_4:62850333-62850352 None:intergenic 30.0%
! TCTTCCAAGCTTTTCAATAT+TGG + chr7_4:62850334-62850353 None:intergenic 30.0%
!! TTTGAAGTTTGTTTGACTTG+CGG + chr7_4:62850680-62850699 None:intergenic 30.0%
TTTAAGTCCTCTCTGTCATT+AGG - chr7_4:62849500-62849519 Msa1169780:CDS 35.0%
CCCTATCATATATCAAACCA+AGG + chr7_4:62849538-62849557 None:intergenic 35.0%
! ATTGCAATTAGTTTCGTGAC+TGG - chr7_4:62849584-62849603 Msa1169780:CDS 35.0%
! GTTCTTAGCTCTTATACCAT+GGG - chr7_4:62849715-62849734 Msa1169780:CDS 35.0%
AAAGAAGAGAAAATGACCCA+TGG + chr7_4:62849734-62849753 None:intergenic 35.0%
TCAGGCAAAGTAGAATGTAT+GGG - chr7_4:62849756-62849775 Msa1169780:CDS 35.0%
TACTATAGTTCTTCCTACCA+AGG + chr7_4:62849823-62849842 None:intergenic 35.0%
! TCAATTTGGAGTTGCTAGAA+TGG - chr7_4:62849850-62849869 Msa1169780:CDS 35.0%
CAATCTGCTTAATGCAATCT+TGG + chr7_4:62849985-62850004 None:intergenic 35.0%
ATTTACAGCAGAAGCTGAAA+TGG - chr7_4:62850105-62850124 Msa1169780:CDS 35.0%
AATGGTACGAACCAGAAATT+TGG + chr7_4:62850133-62850152 None:intergenic 35.0%
TCACAATTGGCACAAAAAGA+TGG - chr7_4:62850241-62850260 Msa1169780:CDS 35.0%
ATCTCAATGCAGACACATTT+AGG - chr7_4:62850437-62850456 Msa1169780:CDS 35.0%
GATATTGAACAGAGATGAAG+AGG - chr7_4:62850459-62850478 Msa1169780:CDS 35.0%
AACTCTTACCAACAAAGATG+AGG - chr7_4:62850534-62850553 Msa1169780:CDS 35.0%
!! CTTTTTCATTACAGCTGCTT+CGG - chr7_4:62850577-62850596 Msa1169780:CDS 35.0%
TATTTCTCTCATCAAGCTAC+TGG + chr7_4:62850611-62850630 None:intergenic 35.0%
!! TTGAAGTTTGTTTGACTTGC+GGG + chr7_4:62850679-62850698 None:intergenic 35.0%
TTTAAGTCCTCTCTGTCATT+AGG - chr7_4:62849500-62849519 Msa1169780:CDS 35.0%
CCCTATCATATATCAAACCA+AGG + chr7_4:62849538-62849557 None:intergenic 35.0%
! ATTGCAATTAGTTTCGTGAC+TGG - chr7_4:62849584-62849603 Msa1169780:CDS 35.0%
! GTTCTTAGCTCTTATACCAT+GGG - chr7_4:62849715-62849734 Msa1169780:CDS 35.0%
AAAGAAGAGAAAATGACCCA+TGG + chr7_4:62849734-62849753 None:intergenic 35.0%
TCAGGCAAAGTAGAATGTAT+GGG - chr7_4:62849756-62849775 Msa1169780:CDS 35.0%
TACTATAGTTCTTCCTACCA+AGG + chr7_4:62849823-62849842 None:intergenic 35.0%
! TCAATTTGGAGTTGCTAGAA+TGG - chr7_4:62849850-62849869 Msa1169780:CDS 35.0%
CAATCTGCTTAATGCAATCT+TGG + chr7_4:62849985-62850004 None:intergenic 35.0%
ATTTACAGCAGAAGCTGAAA+TGG - chr7_4:62850105-62850124 Msa1169780:CDS 35.0%
AATGGTACGAACCAGAAATT+TGG + chr7_4:62850133-62850152 None:intergenic 35.0%
TCACAATTGGCACAAAAAGA+TGG - chr7_4:62850241-62850260 Msa1169780:CDS 35.0%
ATCTCAATGCAGACACATTT+AGG - chr7_4:62850437-62850456 Msa1169780:CDS 35.0%
GATATTGAACAGAGATGAAG+AGG - chr7_4:62850459-62850478 Msa1169780:CDS 35.0%
AACTCTTACCAACAAAGATG+AGG - chr7_4:62850534-62850553 Msa1169780:CDS 35.0%
!! CTTTTTCATTACAGCTGCTT+CGG - chr7_4:62850577-62850596 Msa1169780:CDS 35.0%
TATTTCTCTCATCAAGCTAC+TGG + chr7_4:62850611-62850630 None:intergenic 35.0%
!! TTGAAGTTTGTTTGACTTGC+GGG + chr7_4:62850679-62850698 None:intergenic 35.0%
! ATGCAAAGATCAAGCTTTGG+TGG + chr7_4:62849481-62849500 None:intergenic 40.0%
TAGGGATAATGCATATTGGG+CGG - chr7_4:62849553-62849572 Msa1169780:CDS 40.0%
ACAGCTATGGGATCAATCTA+CGG - chr7_4:62849650-62849669 Msa1169780:CDS 40.0%
! GGTTCTTAGCTCTTATACCA+TGG - chr7_4:62849714-62849733 Msa1169780:CDS 40.0%
CTCAGGCAAAGTAGAATGTA+TGG - chr7_4:62849755-62849774 Msa1169780:CDS 40.0%
CAGGCAAAGTAGAATGTATG+GGG - chr7_4:62849757-62849776 Msa1169780:CDS 40.0%
AGTAGAATGTATGGGGAATC+TGG - chr7_4:62849764-62849783 Msa1169780:CDS 40.0%
GTAGAATGTATGGGGAATCT+GGG - chr7_4:62849765-62849784 Msa1169780:CDS 40.0%
TAGAATGTATGGGGAATCTG+GGG - chr7_4:62849766-62849785 Msa1169780:CDS 40.0%
GGGCAATTTCGACAGTTATA+GGG - chr7_4:62849786-62849805 Msa1169780:CDS 40.0%
GGCAATTTCGACAGTTATAG+GGG - chr7_4:62849787-62849806 Msa1169780:CDS 40.0%
TATAGTACCCCGACTCAATT+TGG - chr7_4:62849836-62849855 Msa1169780:CDS 40.0%
TAGCAACTCCAAATTGAGTC+GGG + chr7_4:62849847-62849866 None:intergenic 40.0%
CTAGCAACTCCAAATTGAGT+CGG + chr7_4:62849848-62849867 None:intergenic 40.0%
ACGACGTATCTCTTTCGTTA+GGG + chr7_4:62850018-62850037 None:intergenic 40.0%
CTGAAATGGAGCCAAATTTC+TGG - chr7_4:62850119-62850138 Msa1169780:CDS 40.0%
CTGTAGCAGGTAGTATGAAA+TGG + chr7_4:62850151-62850170 None:intergenic 40.0%
ATATGCTGGGATCTCTATCA+AGG - chr7_4:62850173-62850192 Msa1169780:CDS 40.0%
!!! GGTAGATCTCTTGCTTTTTG+TGG - chr7_4:62850198-62850217 Msa1169780:CDS 40.0%
! GCTTTTTGTGGCATACTCAA+TGG - chr7_4:62850210-62850229 Msa1169780:CDS 40.0%
AATGGAGCATGTCTCACAAT+TGG - chr7_4:62850228-62850247 Msa1169780:CDS 40.0%
TGGATGGATATTCAAGGTCA+AGG - chr7_4:62850271-62850290 Msa1169780:CDS 40.0%
GGATGGATATTCAAGGTCAA+GGG - chr7_4:62850272-62850291 Msa1169780:CDS 40.0%
TGCCCCAATATTGAAAAGCT+TGG - chr7_4:62850327-62850346 Msa1169780:CDS 40.0%
CAATTTCCTCTAGATGTTGG+AGG + chr7_4:62850507-62850526 None:intergenic 40.0%
CAGCAATTTCCTCTAGATGT+TGG + chr7_4:62850510-62850529 None:intergenic 40.0%
CAACATCTAGAGGAAATTGC+TGG - chr7_4:62850508-62850527 Msa1169780:CDS 40.0%
AAGCATCTCCTCATCTTTGT+TGG + chr7_4:62850545-62850564 None:intergenic 40.0%
!! TGAAGTTTGTTTGACTTGCG+GGG + chr7_4:62850678-62850697 None:intergenic 40.0%
! ATGCAAAGATCAAGCTTTGG+TGG + chr7_4:62849481-62849500 None:intergenic 40.0%
TAGGGATAATGCATATTGGG+CGG - chr7_4:62849553-62849572 Msa1169780:CDS 40.0%
ACAGCTATGGGATCAATCTA+CGG - chr7_4:62849650-62849669 Msa1169780:CDS 40.0%
! GGTTCTTAGCTCTTATACCA+TGG - chr7_4:62849714-62849733 Msa1169780:CDS 40.0%
CTCAGGCAAAGTAGAATGTA+TGG - chr7_4:62849755-62849774 Msa1169780:CDS 40.0%
CAGGCAAAGTAGAATGTATG+GGG - chr7_4:62849757-62849776 Msa1169780:CDS 40.0%
AGTAGAATGTATGGGGAATC+TGG - chr7_4:62849764-62849783 Msa1169780:CDS 40.0%
GTAGAATGTATGGGGAATCT+GGG - chr7_4:62849765-62849784 Msa1169780:CDS 40.0%
TAGAATGTATGGGGAATCTG+GGG - chr7_4:62849766-62849785 Msa1169780:CDS 40.0%
GGGCAATTTCGACAGTTATA+GGG - chr7_4:62849786-62849805 Msa1169780:CDS 40.0%
GGCAATTTCGACAGTTATAG+GGG - chr7_4:62849787-62849806 Msa1169780:CDS 40.0%
TATAGTACCCCGACTCAATT+TGG - chr7_4:62849836-62849855 Msa1169780:CDS 40.0%
TAGCAACTCCAAATTGAGTC+GGG + chr7_4:62849847-62849866 None:intergenic 40.0%
CTAGCAACTCCAAATTGAGT+CGG + chr7_4:62849848-62849867 None:intergenic 40.0%
ACGACGTATCTCTTTCGTTA+GGG + chr7_4:62850018-62850037 None:intergenic 40.0%
CTGAAATGGAGCCAAATTTC+TGG - chr7_4:62850119-62850138 Msa1169780:CDS 40.0%
CTGTAGCAGGTAGTATGAAA+TGG + chr7_4:62850151-62850170 None:intergenic 40.0%
ATATGCTGGGATCTCTATCA+AGG - chr7_4:62850173-62850192 Msa1169780:CDS 40.0%
!!! GGTAGATCTCTTGCTTTTTG+TGG - chr7_4:62850198-62850217 Msa1169780:CDS 40.0%
! GCTTTTTGTGGCATACTCAA+TGG - chr7_4:62850210-62850229 Msa1169780:CDS 40.0%
AATGGAGCATGTCTCACAAT+TGG - chr7_4:62850228-62850247 Msa1169780:CDS 40.0%
TGGATGGATATTCAAGGTCA+AGG - chr7_4:62850271-62850290 Msa1169780:CDS 40.0%
GGATGGATATTCAAGGTCAA+GGG - chr7_4:62850272-62850291 Msa1169780:CDS 40.0%
TGCCCCAATATTGAAAAGCT+TGG - chr7_4:62850327-62850346 Msa1169780:CDS 40.0%
CAATTTCCTCTAGATGTTGG+AGG + chr7_4:62850507-62850526 None:intergenic 40.0%
CAGCAATTTCCTCTAGATGT+TGG + chr7_4:62850510-62850529 None:intergenic 40.0%
CAACATCTAGAGGAAATTGC+TGG - chr7_4:62850508-62850527 Msa1169780:CDS 40.0%
AAGCATCTCCTCATCTTTGT+TGG + chr7_4:62850545-62850564 None:intergenic 40.0%
!! TGAAGTTTGTTTGACTTGCG+GGG + chr7_4:62850678-62850697 None:intergenic 40.0%
! AAGATCAAGCTTTGGTGGCT+GGG + chr7_4:62849476-62849495 None:intergenic 45.0%
! AAAGATCAAGCTTTGGTGGC+TGG + chr7_4:62849477-62849496 None:intergenic 45.0%
AGGGATAATGCATATTGGGC+GGG - chr7_4:62849554-62849573 Msa1169780:CDS 45.0%
GCGTTTGCAACTGAGAATGT+TGG + chr7_4:62849617-62849636 None:intergenic 45.0%
CAGCTATGGGATCAATCTAC+GGG - chr7_4:62849651-62849670 Msa1169780:CDS 45.0%
GGGGCAATTTCGACAGTTAT+AGG - chr7_4:62849785-62849804 Msa1169780:CDS 45.0%
CTTCCTACCAAGGATCAACA+AGG + chr7_4:62849813-62849832 None:intergenic 45.0%
AGCAACTCCAAATTGAGTCG+GGG + chr7_4:62849846-62849865 None:intergenic 45.0%
AGAATGGCAGAGGCTACAAT+AGG - chr7_4:62849866-62849885 Msa1169780:CDS 45.0%
! GCAATCTTGGAGTGTTCTGA+AGG + chr7_4:62849972-62849991 None:intergenic 45.0%
TCTTTCGTTAGGGGTAGTCA+TGG + chr7_4:62850008-62850027 None:intergenic 45.0%
CGACGTATCTCTTTCGTTAG+GGG + chr7_4:62850017-62850036 None:intergenic 45.0%
GACGACGTATCTCTTTCGTT+AGG + chr7_4:62850019-62850038 None:intergenic 45.0%
TACCTGCTACAGCAATATGC+TGG - chr7_4:62850159-62850178 Msa1169780:CDS 45.0%
ACCTGCTACAGCAATATGCT+GGG - chr7_4:62850160-62850179 Msa1169780:CDS 45.0%
CTCTTTCCTCCAACATCTAG+AGG - chr7_4:62850498-62850517 Msa1169780:CDS 45.0%
! AAGATCAAGCTTTGGTGGCT+GGG + chr7_4:62849476-62849495 None:intergenic 45.0%
! AAAGATCAAGCTTTGGTGGC+TGG + chr7_4:62849477-62849496 None:intergenic 45.0%
AGGGATAATGCATATTGGGC+GGG - chr7_4:62849554-62849573 Msa1169780:CDS 45.0%
GCGTTTGCAACTGAGAATGT+TGG + chr7_4:62849617-62849636 None:intergenic 45.0%
CAGCTATGGGATCAATCTAC+GGG - chr7_4:62849651-62849670 Msa1169780:CDS 45.0%
GGGGCAATTTCGACAGTTAT+AGG - chr7_4:62849785-62849804 Msa1169780:CDS 45.0%
CTTCCTACCAAGGATCAACA+AGG + chr7_4:62849813-62849832 None:intergenic 45.0%
AGCAACTCCAAATTGAGTCG+GGG + chr7_4:62849846-62849865 None:intergenic 45.0%
AGAATGGCAGAGGCTACAAT+AGG - chr7_4:62849866-62849885 Msa1169780:CDS 45.0%
! GCAATCTTGGAGTGTTCTGA+AGG + chr7_4:62849972-62849991 None:intergenic 45.0%
TCTTTCGTTAGGGGTAGTCA+TGG + chr7_4:62850008-62850027 None:intergenic 45.0%
CGACGTATCTCTTTCGTTAG+GGG + chr7_4:62850017-62850036 None:intergenic 45.0%
GACGACGTATCTCTTTCGTT+AGG + chr7_4:62850019-62850038 None:intergenic 45.0%
TACCTGCTACAGCAATATGC+TGG - chr7_4:62850159-62850178 Msa1169780:CDS 45.0%
ACCTGCTACAGCAATATGCT+GGG - chr7_4:62850160-62850179 Msa1169780:CDS 45.0%
CTCTTTCCTCCAACATCTAG+AGG - chr7_4:62850498-62850517 Msa1169780:CDS 45.0%
GGCAAAGCCTAATGACAGAG+AGG + chr7_4:62849510-62849529 None:intergenic 50.0%
TTAGGCTTTGCCGTGTTCCT+TGG - chr7_4:62849518-62849537 Msa1169780:CDS 50.0%
TTCTCAGTTGCAAACGCACG+AGG - chr7_4:62849620-62849639 Msa1169780:CDS 50.0%
ACGAGGAACAGGAACAGCTA+TGG - chr7_4:62849637-62849656 Msa1169780:CDS 50.0%
CGAGGAACAGGAACAGCTAT+GGG - chr7_4:62849638-62849657 Msa1169780:CDS 50.0%
!! ATAGGGGCCTTGTTGATCCT+TGG - chr7_4:62849803-62849822 Msa1169780:CDS 50.0%
TGGAGTTGCTAGAATGGCAG+AGG - chr7_4:62849856-62849875 Msa1169780:CDS 50.0%
CTAGAGTTGCAGCTCTTGAG+GGG + chr7_4:62849928-62849947 None:intergenic 50.0%
GCTAGAGTTGCAGCTCTTGA+GGG + chr7_4:62849929-62849948 None:intergenic 50.0%
TGCTAGAGTTGCAGCTCTTG+AGG + chr7_4:62849930-62849949 None:intergenic 50.0%
TCCCAGCATATTGCTGTAGC+AGG + chr7_4:62850164-62850183 None:intergenic 50.0%
GCTGGGATCTCTATCAAGGA+CGG - chr7_4:62850177-62850196 Msa1169780:CDS 50.0%
TCTTGTGACTCGAGATCGTG+AGG + chr7_4:62850415-62850434 None:intergenic 50.0%
GGCAAAGCCTAATGACAGAG+AGG + chr7_4:62849510-62849529 None:intergenic 50.0%
TTAGGCTTTGCCGTGTTCCT+TGG - chr7_4:62849518-62849537 Msa1169780:CDS 50.0%
TTCTCAGTTGCAAACGCACG+AGG - chr7_4:62849620-62849639 Msa1169780:CDS 50.0%
ACGAGGAACAGGAACAGCTA+TGG - chr7_4:62849637-62849656 Msa1169780:CDS 50.0%
CGAGGAACAGGAACAGCTAT+GGG - chr7_4:62849638-62849657 Msa1169780:CDS 50.0%
!! ATAGGGGCCTTGTTGATCCT+TGG - chr7_4:62849803-62849822 Msa1169780:CDS 50.0%
TGGAGTTGCTAGAATGGCAG+AGG - chr7_4:62849856-62849875 Msa1169780:CDS 50.0%
CTAGAGTTGCAGCTCTTGAG+GGG + chr7_4:62849928-62849947 None:intergenic 50.0%
GCTAGAGTTGCAGCTCTTGA+GGG + chr7_4:62849929-62849948 None:intergenic 50.0%
TGCTAGAGTTGCAGCTCTTG+AGG + chr7_4:62849930-62849949 None:intergenic 50.0%
TCCCAGCATATTGCTGTAGC+AGG + chr7_4:62850164-62850183 None:intergenic 50.0%
GCTGGGATCTCTATCAAGGA+CGG - chr7_4:62850177-62850196 Msa1169780:CDS 50.0%
TCTTGTGACTCGAGATCGTG+AGG + chr7_4:62850415-62850434 None:intergenic 50.0%
GTTGCAAACGCACGAGGAAC+AGG - chr7_4:62849626-62849645 Msa1169780:CDS 55.0%
!! GGGCCTTGTTGATCCTTGGT+AGG - chr7_4:62849807-62849826 Msa1169780:CDS 55.0%
GTTGCAAACGCACGAGGAAC+AGG - chr7_4:62849626-62849645 Msa1169780:CDS 55.0%
!! GGGCCTTGTTGATCCTTGGT+AGG - chr7_4:62849807-62849826 Msa1169780:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 62849461 62850735 62849461 ID=Msa1169780;Name=Msa1169780
chr7_4 mRNA 62849461 62850735 62849461 ID=Msa1169780-mRNA-1;Parent=Msa1169780;Name=Msa1169780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|424
chr7_4 exon 62849461 62850735 62849461 ID=Msa1169780-mRNA-1:exon:20023;Parent=Msa1169780-mRNA-1
chr7_4 CDS 62849461 62850735 62849461 ID=Msa1169780-mRNA-1:cds;Parent=Msa1169780-mRNA-1
Gene Sequence

>Msa1169780

ATGAACTTGATTCCCAGCCACCAAAGCTTGATCTTTGCATTTAAGTCCTCTCTGTCATTAGGCTTTGCCGTGTTCCTTGGTTTGATATATGATAGGGATAATGCATATTGGGCGGGACTCACAATTGCAATTAGTTTCGTGACTGGACGACAGCCAACATTCTCAGTTGCAAACGCACGAGGAACAGGAACAGCTATGGGATCAATCTACGGGATCATATGTAGCTTCATTTTCCAAAGATTTGTGGATTTAAGGTTCTTAGCTCTTATACCATGGGTCATTTTCTCTTCTTTTCTCAGGCAAAGTAGAATGTATGGGGAATCTGGGGCAATTTCGACAGTTATAGGGGCCTTGTTGATCCTTGGTAGGAAGAACTATAGTACCCCGACTCAATTTGGAGTTGCTAGAATGGCAGAGGCTACAATAGGACTTACTTGCTTCATCATAATAGAGATTATATTAAGCCCCTCAAGAGCTGCAACTCTAGCAAAATCAGAACTTTCTCAAACCTTCAGAACACTCCAAGATTGCATTAAGCAGATTGCCATGACTACCCCTAACGAAAGAGATACGTCGTCTTCAAGTTATCAAGCACTGCGAGAAGAGCACAAGAAGCTTAAATCTCTTGTGTGTCGATTAAGAGAATTTACAGCAGAAGCTGAAATGGAGCCAAATTTCTGGTTCGTACCATTTCATACTACCTGCTACAGCAATATGCTGGGATCTCTATCAAGGACGGTAGATCTCTTGCTTTTTGTGGCATACTCAATGGAGCATGTCTCACAATTGGCACAAAAAGATGGAGTAATTTGGATGGATATTCAAGGTCAAGGGAATGAGAATGTGAAGATTTTTAAGAACAAAGTTGCCCCAATATTGAAAAGCTTGGAAGAAATAACAACGACGAAGTCTATTAAGAAACTTGAAAACGAGTTGAAGAGCAAAAATGTTCCTCACGATCTCGAGTCACAAGAATATCTCAATGCAGACACATTTAGGATATTGAACAGAGATGAAGAGGTTGACAGCATTACAAACTCTTTCCTCCAACATCTAGAGGAAATTGCTGGCAAAACTCTTACCAACAAAGATGAGGAGATGCTTAAAATTCAGATGCTTTTTCATTACAGCTGCTTCGGATTCTGCACCAGTAGCTTGATGAGAGAAATAACCAAGATTGAGAGTGAAATAAAAGAACTACTTATATGGGAGAACCCCGCAAGTCAAACAAACTTCAAAGAAATTCACTCTAAGATCAATCCTCTGCAAACATAG

Protein sequence

>Msa1169780

MNLIPSHQSLIFAFKSSLSLGFAVFLGLIYDRDNAYWAGLTIAISFVTGRQPTFSVANARGTGTAMGSIYGIICSFIFQRFVDLRFLALIPWVIFSSFLRQSRMYGESGAISTVIGALLILGRKNYSTPTQFGVARMAEATIGLTCFIIIEIILSPSRAATLAKSELSQTFRTLQDCIKQIAMTTPNERDTSSSSYQALREEHKKLKSLVCRLREFTAEAEMEPNFWFVPFHTTCYSNMLGSLSRTVDLLLFVAYSMEHVSQLAQKDGVIWMDIQGQGNENVKIFKNKVAPILKSLEEITTTKSIKKLENELKSKNVPHDLESQEYLNADTFRILNRDEEVDSITNSFLQHLEEIAGKTLTNKDEEMLKIQMLFHYSCFGFCTSSLMREITKIESEIKELLIWENPASQTNFKEIHSKINPLQT*