AlfalfaGEDB | Msa1207880

M. sativa cultivar zhongmu-4 / Msa1207880

KEGG: K14423
GO: GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0030258 GO:0031984 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0080064 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617
PFAM: PF04116.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1207880	XP_003608797.1	98.680	303	4	0	1	303	1	303	0.0	624

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1207880	sp\|Q8L7W5\|SMO11_ARATH	76.109	293	68	1	1	291	1	293	1.07e-174	488

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1207880	G7JK82	98.680	303	4	0	1	303	1	303	0.0	624

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014970	Msa1207880	-0.818239	2.174518e-52	-8.615850e-47
Msa0025060	Msa1207880	-0.813096	3.042221e-51	-8.615850e-47
Msa0029730	Msa1207880	0.833944	3.985258e-56	-8.615850e-47
Msa0034050	Msa1207880	-0.819597	1.068538e-52	-8.615850e-47
Msa0036560	Msa1207880	-0.801467	8.882590e-49	-8.615850e-47
Msa0050320	Msa1207880	-0.855715	5.238133e-62	-8.615850e-47
Msa0063850	Msa1207880	-0.800504	1.397107e-48	-8.615850e-47
Msa0071640	Msa1207880	0.820443	6.840930e-53	-8.615850e-47
Msa0075370	Msa1207880	-0.807689	4.471481e-50	-8.615850e-47
Msa0081700	Msa1207880	-0.816499	5.359793e-52	-8.615850e-47
Msa0094900	Msa1207880	-0.802294	6.006499e-49	-8.615850e-47
Msa0099090	Msa1207880	-0.820199	7.782727e-53	-8.615850e-47
Msa0108500	Msa1207880	-0.809660	1.695298e-50	-8.615850e-47
Msa0604890	Msa1207880	-0.804699	1.905639e-49	-8.615850e-47
Msa0608940	Msa1207880	-0.856724	2.650726e-62	-8.615850e-47
Msa0617470	Msa1207880	-0.806833	6.787696e-50	-8.615850e-47
Msa0646180	Msa1207880	-0.820270	7.494213e-53	-8.615850e-47
Msa0649530	Msa1207880	-0.868621	5.698625e-66	-8.615850e-47
Msa0691740	Msa1207880	-0.873483	1.420517e-67	-8.615850e-47
Msa0700250	Msa1207880	-0.808905	2.461212e-50	-8.615850e-47
Msa0714060	Msa1207880	-0.803045	4.204423e-49	-8.615850e-47
Msa0733240	Msa1207880	-0.809301	2.025068e-50	-8.615850e-47
Msa0756440	Msa1207880	-0.815831	7.557432e-52	-8.615850e-47
Msa0779830	Msa1207880	-0.806195	9.256263e-50	-8.615850e-47
Msa0835550	Msa1207880	-0.818175	2.248531e-52	-8.615850e-47
Msa0131090	Msa1207880	-0.800449	1.433538e-48	-8.615850e-47
Msa0139280	Msa1207880	-0.816010	6.893945e-52	-8.615850e-47
Msa0154720	Msa1207880	-0.855871	4.717454e-62	-8.615850e-47
Msa0169710	Msa1207880	0.816531	5.270747e-52	-8.615850e-47
Msa0174060	Msa1207880	-0.807244	5.556945e-50	-8.615850e-47
Msa0178440	Msa1207880	-0.803591	3.239711e-49	-8.615850e-47
Msa0194750	Msa1207880	-0.820811	5.631716e-53	-8.615850e-47
Msa0195030	Msa1207880	0.820718	5.916528e-53	-8.615850e-47
Msa0208710	Msa1207880	-0.827030	1.959245e-54	-8.615850e-47
Msa0209370	Msa1207880	-0.814139	1.794004e-51	-8.615850e-47
Msa0225070	Msa1207880	-0.806989	6.290689e-50	-8.615850e-47
Msa0226580	Msa1207880	-0.821123	4.772554e-53	-8.615850e-47
Msa0236690	Msa1207880	-0.815380	9.523375e-52	-8.615850e-47
Msa0237180	Msa1207880	0.825844	3.756584e-54	-8.615850e-47
Msa0238420	Msa1207880	0.816404	5.627963e-52	-8.615850e-47
Msa0370350	Msa1207880	-0.813922	2.003216e-51	-8.615850e-47
Msa0372990	Msa1207880	-0.820242	7.604923e-53	-8.615850e-47
Msa0478730	Msa1207880	-0.800511	1.392828e-48	-8.615850e-47
Msa0480940	Msa1207880	0.992325	1.289587e-192	-8.615850e-47
Msa1031530	Msa1207880	-0.817640	2.970199e-52	-8.615850e-47
Msa1078590	Msa1207880	-0.802620	5.144710e-49	-8.615850e-47
Msa1093190	Msa1207880	-0.811645	6.310585e-51	-8.615850e-47
Msa0266380	Msa1207880	-0.807926	3.980991e-50	-8.615850e-47
Msa0267450	Msa1207880	-0.805472	1.313250e-49	-8.615850e-47
Msa0269660	Msa1207880	-0.816486	5.395425e-52	-8.615850e-47
Msa0274940	Msa1207880	0.807105	5.945343e-50	-8.615850e-47
Msa0304350	Msa1207880	-0.810027	1.413652e-50	-8.615850e-47
Msa0305910	Msa1207880	-0.809542	1.797136e-50	-8.615850e-47
Msa0315660	Msa1207880	0.825340	4.945271e-54	-8.615850e-47
Msa0340830	Msa1207880	-0.810937	8.989799e-51	-8.615850e-47
Msa0340870	Msa1207880	-0.814782	1.292793e-51	-8.615850e-47
Msa0341860	Msa1207880	-0.809759	1.614120e-50	-8.615850e-47
Msa1112230	Msa1207880	-0.815169	1.060830e-51	-8.615850e-47
Msa1116950	Msa1207880	-0.809904	1.502572e-50	-8.615850e-47
Msa1124980	Msa1207880	0.802382	5.760058e-49	-8.615850e-47
Msa1158650	Msa1207880	-0.806998	6.263730e-50	-8.615850e-47
Msa1182400	Msa1207880	-0.836150	1.107808e-56	-8.615850e-47
Msa1199750	Msa1207880	-0.804130	2.503385e-49	-8.615850e-47
Msa1207880	Msa1228600	-0.812797	3.538574e-51	-8.615850e-47
Msa1207880	Msa1230190	-0.837099	6.345955e-57	-8.615850e-47
Msa1207880	Msa1240240	-0.810403	1.173108e-50	-8.615850e-47
Msa1207880	Msa1251500	0.838463	2.833614e-57	-8.615850e-47
Msa1207880	Msa1258060	0.956488	2.619447e-114	-8.615850e-47
Msa1207880	Msa1266120	-0.800814	1.207742e-48	-8.615850e-47
Msa1207880	Msa1272770	-0.834257	3.328182e-56	-8.615850e-47
Msa1207880	Msa1286950	-0.830603	2.675974e-55	-8.615850e-47
Msa1207880	Msa1292140	0.809119	2.215384e-50	-8.615850e-47
Msa1207880	Msa1295840	-0.804920	1.713317e-49	-8.615850e-47
Msa1207880	Msa1297220	-0.802253	6.125454e-49	-8.615850e-47
Msa1207880	Msa1319230	-0.822823	1.927158e-53	-8.615850e-47
Msa1207880	Msa1320660	-0.826675	2.382021e-54	-8.615850e-47
Msa1207880	Msa1321840	0.800647	1.306630e-48	-8.615850e-47
Msa1207880	Msa1323260	-0.808294	3.323552e-50	-8.615850e-47
Msa1207880	Msa1339310	-0.809870	1.528104e-50	-8.615850e-47
Msa1207880	Msa1343450	-0.808239	3.415185e-50	-8.615850e-47
Msa1207880	Msa1346220	-0.822472	2.326120e-53	-8.615850e-47
Msa1207880	Msa1346340	-0.834122	3.597393e-56	-8.615850e-47
Msa1207880	Msa1359880	-0.818207	2.211301e-52	-8.615850e-47
Msa1207880	Msa1363270	-0.801125	1.043302e-48	-8.615850e-47
Msa1207880	Msa1363280	-0.801363	9.326003e-49	-8.615850e-47
Msa1207880	Msa1382100	-0.816901	4.353582e-52	-8.615850e-47
Msa1207880	Msa1388270	-0.806968	6.356639e-50	-8.615850e-47
Msa1207880	Msa1392570	-0.818531	1.867124e-52	-8.615850e-47
Msa1207880	Msa1395700	-0.817049	4.034165e-52	-8.615850e-47
Msa1207880	Msa1398310	-0.804472	2.125370e-49	-8.615850e-47
Msa1207880	Msa1400240	-0.815485	9.026813e-52	-8.615850e-47
Msa1207880	Msa1408990	0.945353	3.576278e-104	-8.615850e-47
Msa1207880	Msa1423050	0.802222	6.213832e-49	-8.615850e-47
Msa1207880	Msa1432250	-0.839458	1.565431e-57	-8.615850e-47
Msa1207880	Msa1438780	-0.800594	1.339495e-48	-8.615850e-47
Msa1207880	Msa1450850	-0.834219	3.401586e-56	-8.615850e-47
Msa1207880	Msa1459630	-0.820934	5.276254e-53	-8.615850e-47
Msa1207880	Msa1460530	-0.811870	5.639425e-51	-8.615850e-47
Msa0483090	Msa1207880	-0.825151	5.481068e-54	-8.615850e-47
Msa0538050	Msa1207880	-0.803959	2.717335e-49	-8.615850e-47
Msa0540160	Msa1207880	-0.816699	4.834330e-52	-8.615850e-47
Msa0555510	Msa1207880	-0.860038	2.728920e-63	-8.615850e-47
Msa0852090	Msa1207880	-0.800899	1.160762e-48	-8.615850e-47
Msa0880050	Msa1207880	0.807250	5.539900e-50	-8.615850e-47
Msa0906100	Msa1207880	-0.800427	1.448895e-48	-8.615850e-47
Msa0917630	Msa1207880	-0.826569	2.523929e-54	-8.615850e-47
Msa0967250	Msa1207880	-0.806549	7.794002e-50	-8.615850e-47
Msa0967900	Msa1207880	-0.818319	2.085455e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1207880	MtrunA17_Chr4g0056801	98.680	303	4	0	1	303	1	303	0.0	624
Msa1207880	MtrunA17_Chr7g0245771	68.786	173	54	0	112	284	24	196	7.77e-93	274
Msa1207880	MtrunA17_Chr8g0364601	41.887	265	150	3	22	285	6	267	4.20e-67	211
Msa1207880	MtrunA17_Chr5g0414141	43.651	252	138	3	33	283	17	265	1.27e-66	209
Msa1207880	MtrunA17_Chr6g0466381	43.333	240	132	3	22	260	6	242	1.10e-62	198
Msa1207880	MtrunA17_Chr6g0465561	43.333	240	132	3	22	260	6	242	1.25e-62	198
Msa1207880	MtrunA17_Chr7g0245781	53.982	113	52	0	1	113	1	113	7.79e-39	133
Msa1207880	MtrunA17_Chr5g0416951	31.788	151	94	4	129	274	101	247	1.11e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1207880	AT4G12110.1	76.109	293	68	1	1	291	1	293	1.08e-175	488
Msa1207880	AT4G22756.1	74.247	299	73	2	1	295	1	299	1.15e-171	477
Msa1207880	AT4G22755.1	69.072	291	87	2	1	290	1	289	2.68e-156	438
Msa1207880	AT1G07420.1	42.642	265	144	4	19	282	3	260	6.54e-69	215
Msa1207880	AT2G29390.3	43.033	244	135	3	33	275	10	250	7.55e-66	207
Msa1207880	AT2G29390.2	41.473	258	147	3	19	275	3	257	9.37e-66	207
Msa1207880	AT1G07420.2	46.970	198	101	1	85	282	29	222	1.44e-64	203
Msa1207880	AT2G29390.5	45.550	191	104	0	85	275	26	216	9.98e-63	198
Msa1207880	AT2G29390.1	39.630	270	147	4	19	275	3	269	2.61e-62	199
Msa1207880	AT2G29390.6	47.222	180	91	1	102	281	1	176	7.46e-61	192
Msa1207880	AT2G29390.4	47.222	180	91	1	102	281	1	176	7.46e-61	192
Msa1207880	AT1G14290.1	29.224	219	142	6	64	274	30	243	7.46e-14	70.5
Msa1207880	AT1G14290.2	33.113	151	92	4	129	274	23	169	1.24e-12	65.9

Find 107 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGGGCGGAGATCTTGATTT+TGG	0.150585	8_1:+65689088	Msa1207880:CDS
ACATATTGTGATTACATCTA+TGG	0.218915	8_1:+65691125	Msa1207880:CDS
ATAGATTTCTGCATAATAAA+TGG	0.221052	8_1:+65688994	Msa1207880:CDS
TATATGTCTACAAGAAATTT+TGG	0.231686	8_1:-65691601	None:intergenic
CTTGGACCGGCTATGGTTCC+TGG	0.248242	8_1:+65689125	Msa1207880:CDS
TATTGTAGATGATTGGAATT+AGG	0.278974	8_1:+65688883	Msa1207880:intron
ATTTATTATGCAGAAATCTA+TGG	0.288607	8_1:-65688992	None:intergenic
TATAGCAATTAAGCATTTCA+TGG	0.305557	8_1:-65688718	None:intergenic
CTGGTCACATGATTACATTT+TGG	0.315803	8_1:+65689144	Msa1207880:CDS
AAAATGTTCTTCCTTGTTGT+TGG	0.321889	8_1:+65688752	Msa1207880:CDS
TCCCTGTGGATTGTAAATTC+TGG	0.327737	8_1:+65691801	Msa1207880:three_prime_UTR
TGGAGGATTATACGAATTAC+TGG	0.338989	8_1:+65688967	Msa1207880:CDS
TGCTCAGCGCCACCATAAAA+TGG	0.348188	8_1:-65691044	None:intergenic
TAGATTTCTGCATAATAAAT+GGG	0.360869	8_1:+65688995	Msa1207880:CDS
ACTAGTAAAATAGATGTCTT+TGG	0.366009	8_1:+65691630	Msa1207880:three_prime_UTR
GAAGAGAAAGTAATCGGATT+TGG	0.370486	8_1:-65688570	None:intergenic
TGTGATTGTGATTACCTTGA+TGG	0.370973	8_1:-65688801	None:intergenic
AGATGTCTTTGGTTAGCTTC+AGG	0.374928	8_1:+65691641	Msa1207880:three_prime_UTR
CGCCGGCAATCTCTCTCTCT+AGG	0.380944	8_1:+65688430	Msa1207880:five_prime_UTR
ATGGAGAGATAAACGAACTT+TGG	0.389544	8_1:-65688699	None:intergenic
CCGGCGGCGGGAGAGGGGAG+AGG	0.399811	8_1:-65688413	None:intergenic
TGCGGCGCCTTATGCACATT+GGG	0.401426	8_1:+65689070	Msa1207880:CDS
CGAGGGAGAAGATGAGGAAG+AGG	0.414192	8_1:-65688610	None:intergenic
TGGAGAGATAAACGAACTTT+GGG	0.417171	8_1:-65688698	None:intergenic
GAGATTGCCGGCGGCGGGAG+AGG	0.427256	8_1:-65688420	None:intergenic
TCTCGGCGTCGTGGAGAGAT+TGG	0.432872	8_1:-65688490	None:intergenic
AGGATGAAGACTAGTAGAAC+GGG	0.441695	8_1:+65691661	Msa1207880:three_prime_UTR
CATGAATATCAAGCTCCAAT+TGG	0.447424	8_1:+65689044	Msa1207880:CDS
TGGAAGATCATATAATGAAC+AGG	0.447595	8_1:+65691508	Msa1207880:CDS
GTGAAACAGACTTCCTCCTC+TGG	0.450453	8_1:+65691828	Msa1207880:three_prime_UTR
ATCTCCGCCCAATGTGCATA+AGG	0.458453	8_1:-65689077	None:intergenic
TAAGGCGCCGCAAATCCAAT+TGG	0.460635	8_1:-65689059	None:intergenic
AGATTGCCGGCGGCGGGAGA+GGG	0.462188	8_1:-65688419	None:intergenic
ATGACAGAAGAGAAAGTAAT+CGG	0.467469	8_1:-65688576	None:intergenic
AGAGAGAGATTGCCGGCGGC+GGG	0.468525	8_1:-65688425	None:intergenic
CACGATTACCATCATTATGT+TGG	0.470556	8_1:+65691068	Msa1207880:CDS
TTGCGGCGCCTTATGCACAT+TGG	0.470678	8_1:+65689069	Msa1207880:CDS
AGGTGGTGTATGTTGTATGT+TGG	0.473393	8_1:+65691565	Msa1207880:three_prime_UTR
GTAGTTGAACCATAGGGTTT+CGG	0.479091	8_1:-65688540	None:intergenic
TCAAGCTCCAATTGGATTTG+CGG	0.480625	8_1:+65689052	Msa1207880:CDS
CGTTTCTTATCCTTCCATCA+AGG	0.481297	8_1:+65688787	Msa1207880:CDS
CTGAAGGAAGATTCGACAAA+TGG	0.482061	8_1:+65691473	Msa1207880:CDS
TTCCAGAATTTACAATCCAC+AGG	0.484330	8_1:-65691803	None:intergenic
TGGTGGATGATGCGCTGGAC+TGG	0.495240	8_1:-65688358	None:intergenic
GAACCATAGGGTTTCGGCGA+AGG	0.497179	8_1:-65688534	None:intergenic
GAGGAACGAGGGAGAAGATG+AGG	0.498130	8_1:-65688616	None:intergenic
GGGATCATCGTCGCCGGCGC+CGG	0.499513	8_1:-65688464	None:intergenic
TCACCTTCGCCGAAACCCTA+TGG	0.501858	8_1:+65688531	Msa1207880:CDS
TCAGAAGAAGATACTTCAAA+AGG	0.505907	8_1:+65691273	Msa1207880:CDS
ACCCTAGAGAGAGAGATTGC+CGG	0.512601	8_1:-65688432	None:intergenic
GAGAGAGAGATTGCCGGCGG+CGG	0.513252	8_1:-65688426	None:intergenic
ATGTCAGGTATGACTTCCCC+TGG	0.513299	8_1:+65691003	Msa1207880:intron
TAGATGATTGGAATTAGGAC+GGG	0.513499	8_1:+65688888	Msa1207880:intron
CCTCTCCCCTCTCCCGCCGC+CGG	0.514345	8_1:+65688413	Msa1207880:five_prime_UTR
ACAAATGGTGCAGCGCGGAA+TGG	0.520094	8_1:+65691488	Msa1207880:CDS
TAGCGGAGTAGTTGAACCAT+AGG	0.521461	8_1:-65688547	None:intergenic
TAATGTAGAGAGAGTGTGTA+TGG	0.524622	8_1:-65688378	None:intergenic
CGGCGGCGGGAGAGGGGAGA+GGG	0.531448	8_1:-65688412	None:intergenic
GATTGCCGGCGGCGGGAGAG+GGG	0.531911	8_1:-65688418	None:intergenic
AAACTGATGCAAAATTGCTC+TGG	0.537490	8_1:-65691100	None:intergenic
GTAGATGATTGGAATTAGGA+CGG	0.538786	8_1:+65688887	Msa1207880:intron
GATTACCATCATTATGTTGG+AGG	0.541524	8_1:+65691071	Msa1207880:CDS
GCGTCGTGGAGAGATTGGTA+AGG	0.542904	8_1:-65688485	None:intergenic
ATTGCGACCGAGAGAGATCT+CGG	0.545066	8_1:-65688507	None:intergenic
CACGACGCCGAGATCTCTCT+CGG	0.545396	8_1:+65688500	Msa1207880:CDS
ATGTGACCAGGAACCATAGC+CGG	0.548009	8_1:-65689131	None:intergenic
GAGATAAACGAACTTTGGGC+TGG	0.549681	8_1:-65688694	None:intergenic
GCCGGCAATCTCTCTCTCTA+GGG	0.550744	8_1:+65688431	Msa1207880:five_prime_UTR
ACGGGGTTACCGTTACCGTC+TGG	0.551559	8_1:+65688906	Msa1207880:CDS
GGATGATGCGCTGGACTGGA+TGG	0.552322	8_1:-65688354	None:intergenic
GTGTATGGTGGATGATGCGC+TGG	0.556925	8_1:-65688363	None:intergenic
TTTGTCCTCCAACATAATGA+TGG	0.557552	8_1:-65691076	None:intergenic
GTACCCGCTGTGTGTATCAA+TGG	0.560522	8_1:-65689195	None:intergenic
AAAGTAATCGGATTTGGTAG+CGG	0.569740	8_1:-65688564	None:intergenic
TGGATCTTGTACTCATCGAA+AGG	0.573332	8_1:-65688674	None:intergenic
AAACGAGTGGAAGAGGAACG+AGG	0.585179	8_1:-65688628	None:intergenic
GGCGCCTTATGCACATTGGG+CGG	0.588545	8_1:+65689073	Msa1207880:CDS
GATGCGCTGGACTGGATGGA+TGG	0.590898	8_1:-65688350	None:intergenic
AGCGGAGTAGTTGAACCATA+GGG	0.591782	8_1:-65688546	None:intergenic
GGATAAGAAACGAGTTGAAG+AGG	0.594918	8_1:-65688776	None:intergenic
GGATCTTGTACTCATCGAAA+GGG	0.594949	8_1:-65688673	None:intergenic
ATCTCAAATCCAGACGGTAA+CGG	0.597339	8_1:-65688915	None:intergenic
CAGGATGAAGACTAGTAGAA+CGG	0.597696	8_1:+65691660	Msa1207880:three_prime_UTR
TGGTAAGGGATCATCGTCGC+CGG	0.598287	8_1:-65688470	None:intergenic
TGAAACAGACTTCCTCCTCT+GGG	0.598630	8_1:+65691829	Msa1207880:three_prime_UTR
CGAGAGAGATCTCGGCGTCG+TGG	0.610673	8_1:-65688499	None:intergenic
TGTAGAGAGAGTGTGTATGG+TGG	0.612108	8_1:-65688375	None:intergenic
CGTCGTGGAGAGATTGGTAA+GGG	0.613592	8_1:-65688484	None:intergenic
GTGTATCAATGGCTTCAACT+TGG	0.614849	8_1:-65689184	None:intergenic
AGATTTCTGCATAATAAATG+GGG	0.616388	8_1:+65688996	Msa1207880:CDS
TCCAGAATTTACAATCCACA+GGG	0.621641	8_1:-65691802	None:intergenic
CAAAATGTAATCATGTGACC+AGG	0.621665	8_1:-65689143	None:intergenic
AGATGATTGGAATTAGGACG+GGG	0.631542	8_1:+65688889	Msa1207880:intron
TTTGAATTGCAACCCAGAGG+AGG	0.632979	8_1:-65691841	None:intergenic
AAGCCATTGATACACACAGC+GGG	0.635131	8_1:+65689192	Msa1207880:CDS
ATTGTGATTACCTTGATGGA+AGG	0.636565	8_1:-65688797	None:intergenic
ATAGCCGGTCCAAGAAAAGA+CGG	0.640967	8_1:-65689116	None:intergenic
AACGAGTGGAAGAGGAACGA+GGG	0.641822	8_1:-65688627	None:intergenic
GATAATATCTCAAATCCAGA+CGG	0.645775	8_1:-65688921	None:intergenic
GTTGAAGAGGACCAACAACA+AGG	0.668088	8_1:-65688763	None:intergenic
TGTCTGTTAACGCAAACAAG+CGG	0.675794	8_1:-65688325	None:intergenic
CTAGAGAGAGAGATTGCCGG+CGG	0.699326	8_1:-65688429	None:intergenic
TAAGAATGATCATTTCCCTG+TGG	0.705862	8_1:+65691787	Msa1207880:three_prime_UTR
ATTCGACAAATGGTGCAGCG+CGG	0.713447	8_1:+65691483	Msa1207880:CDS
TTACATCTATGGAACAGACA+AGG	0.732719	8_1:+65691136	Msa1207880:CDS
GGATGAAGACTAGTAGAACG+GGG	0.748085	8_1:+65691662	Msa1207880:three_prime_UTR
GAAGCCATTGATACACACAG+CGG	0.790862	8_1:+65689191	Msa1207880:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAAAATATCAACAAAAAA+AGG	-	chr8_1:65689237-65689256	None:intergenic	10.0%
!!	ATAATAAGTTAAATATGAAA+TGG	+	chr8_1:65690190-65690209	Msa1207880:intron	10.0%
!!	ATAATACACAAAAAAATCAA+AGG	-	chr8_1:65689382-65689401	None:intergenic	15.0%
!!!	ATTTAACTTATTATGAGAAA+AGG	-	chr8_1:65690184-65690203	None:intergenic	15.0%
!!!	ATAGATTGTCTTATTATATT+TGG	+	chr8_1:65690704-65690723	Msa1207880:intron	15.0%
!!!	TTTAAAATAGTGATTATATC+TGG	+	chr8_1:65690774-65690793	Msa1207880:intron	15.0%
!!!	TAAAATGGAATATATTTTGT+GGG	-	chr8_1:65691032-65691051	None:intergenic	15.0%
!!!	ATAAAATGGAATATATTTTG+TGG	-	chr8_1:65691033-65691052	None:intergenic	15.0%
!!!	ACAAAATATATTCCATTTTA+TGG	+	chr8_1:65691032-65691051	Msa1207880:CDS	15.0%
!!!	TCAAAAAGCATAATAAAATT+TGG	+	chr8_1:65691859-65691878	Msa1207880:three_prime_UTR	15.0%
!!!	TTAAATTACCGTTTTAGTTA+CGG	+	chr8_1:65688840-65688859	Msa1207880:intron	20.0%
!!	AATTATAACCGTAACTAAAA+CGG	-	chr8_1:65688851-65688870	None:intergenic	20.0%
!!!	TTTTGTTTATTGTAGATGAT+TGG	+	chr8_1:65688876-65688895	Msa1207880:intron	20.0%
!!!	GCAATTATTAGTGTATTTTT+TGG	+	chr8_1:65688944-65688963	Msa1207880:CDS	20.0%
!!!	ATTATTAGTGTATTTTTTGG+TGG	+	chr8_1:65688947-65688966	Msa1207880:CDS	20.0%
!!	ATTTATTATGCAGAAATCTA+TGG	-	chr8_1:65688995-65689014	None:intergenic	20.0%
!!	ATAGATTTCTGCATAATAAA+TGG	+	chr8_1:65688994-65689013	Msa1207880:CDS	20.0%
!!	TAGATTTCTGCATAATAAAT+GGG	+	chr8_1:65688995-65689014	Msa1207880:CDS	20.0%
!!	AAAAAAATCAAAGGAGTAAA+AGG	-	chr8_1:65689373-65689392	None:intergenic	20.0%
!!	TGTTTCTTAGTAAGATTATT+AGG	+	chr8_1:65689437-65689456	Msa1207880:intron	20.0%
!!	GTTTCTTAGTAAGATTATTA+GGG	+	chr8_1:65689438-65689457	Msa1207880:intron	20.0%
!!	GAATATTAGGTAAAAGATAA+AGG	-	chr8_1:65690103-65690122	None:intergenic	20.0%
!!!	CTTTTACCTAATATTCATTT+CGG	+	chr8_1:65690107-65690126	Msa1207880:intron	20.0%
!!	AAACAAAAAAAATGCTAACT+TGG	+	chr8_1:65690213-65690232	Msa1207880:intron	20.0%
!!	CATTTAAAGACAATTTAAAC+GGG	-	chr8_1:65690249-65690268	None:intergenic	20.0%
!!	CCATTTAAAGACAATTTAAA+CGG	-	chr8_1:65690250-65690269	None:intergenic	20.0%
!!	AAGACACAATAATCTAAATA+CGG	-	chr8_1:65690280-65690299	None:intergenic	20.0%
!!	GTTGAAGAAAAAAAATTTGA+AGG	+	chr8_1:65690314-65690333	Msa1207880:intron	20.0%
!!	AAAAATTTGAAGGACAATTT+AGG	+	chr8_1:65690324-65690343	Msa1207880:intron	20.0%
!!	AAAATTTGAAGGACAATTTA+GGG	+	chr8_1:65690325-65690344	Msa1207880:intron	20.0%
!!!	CTTTTTCCTAATAATCATTT+TGG	-	chr8_1:65690482-65690501	None:intergenic	20.0%
!!	GATTATTAGGAAAAAGATAA+AGG	+	chr8_1:65690486-65690505	Msa1207880:intron	20.0%
!!	ATATAGTTGAATGTCAAAAA+TGG	+	chr8_1:65690562-65690581	Msa1207880:intron	20.0%
!!	CAATTGAATGTAAAAATTGT+AGG	+	chr8_1:65690648-65690667	Msa1207880:intron	20.0%
!!	TATCTATCTAATGAAAAAGA+GGG	-	chr8_1:65690906-65690925	None:intergenic	20.0%
!!	ATATCTATCTAATGAAAAAG+AGG	-	chr8_1:65690907-65690926	None:intergenic	20.0%
!!!	AAATATATTCCATTTTATGG+TGG	+	chr8_1:65691035-65691054	Msa1207880:CDS	20.0%
!!	ACTAAACAAAATGAAAAATG+TGG	-	chr8_1:65691390-65691409	None:intergenic	20.0%
!!!	TATATGTCTACAAGAAATTT+TGG	-	chr8_1:65691604-65691623	None:intergenic	20.0%
!	TATAGCAATTAAGCATTTCA+TGG	-	chr8_1:65688721-65688740	None:intergenic	25.0%
!	TATTGTAGATGATTGGAATT+AGG	+	chr8_1:65688883-65688902	Msa1207880:intron	25.0%
!	AGATTTCTGCATAATAAATG+GGG	+	chr8_1:65688996-65689015	Msa1207880:CDS	25.0%
!	ATTACTTTATGCTGAAAGTT+CGG	+	chr8_1:65689692-65689711	Msa1207880:intron	25.0%
!!!	ACATTAAGTGTTCTAAAAAG+AGG	-	chr8_1:65689793-65689812	None:intergenic	25.0%
!	AGTCCAATTAAAAATATTCC+TGG	+	chr8_1:65689843-65689862	Msa1207880:intron	25.0%
!!!	TGTCCAGGAATATTTTTAAT+TGG	-	chr8_1:65689849-65689868	None:intergenic	25.0%
!!	TAGAAACTTTTTACAAGCTT+TGG	+	chr8_1:65689957-65689976	Msa1207880:intron	25.0%
!	TTAAGACCGAAATGAATATT+AGG	-	chr8_1:65690116-65690135	None:intergenic	25.0%
!	CCGTTTAAATTGTCTTTAAA+TGG	+	chr8_1:65690247-65690266	Msa1207880:intron	25.0%
!!!	AAAAAATGTTGACTTAGCAA+TGG	-	chr8_1:65690402-65690421	None:intergenic	25.0%
!	AAAGGACCAAAATGATTATT+AGG	+	chr8_1:65690473-65690492	Msa1207880:intron	25.0%
!	AAAATAGTGATTATATCTGG+TGG	+	chr8_1:65690777-65690796	Msa1207880:intron	25.0%
!	TGTCTGTAGGATTTAATATT+CGG	+	chr8_1:65690848-65690867	Msa1207880:intron	25.0%
!	ATCTATCTAATGAAAAAGAG+GGG	-	chr8_1:65690905-65690924	None:intergenic	25.0%
!	AGCAATCAAACATAAAAGTT+GGG	-	chr8_1:65690972-65690991	None:intergenic	25.0%
!	AAGCAATCAAACATAAAAGT+TGG	-	chr8_1:65690973-65690992	None:intergenic	25.0%
!	ACATATTGTGATTACATCTA+TGG	+	chr8_1:65691125-65691144	Msa1207880:CDS	25.0%
!	AACAAAATGAAAAATGTGGA+AGG	-	chr8_1:65691386-65691405	None:intergenic	25.0%
!	ACTAGTAAAATAGATGTCTT+TGG	+	chr8_1:65691630-65691649	Msa1207880:three_prime_UTR	25.0%
!!!	TGATTTTGTTTTACAAGAGT+GGG	+	chr8_1:65691697-65691716	Msa1207880:three_prime_UTR	25.0%
!!	ATTTTTCTGTTGTCATGTTT+TGG	+	chr8_1:65691731-65691750	Msa1207880:three_prime_UTR	25.0%
	ATGACAGAAGAGAAAGTAAT+CGG	-	chr8_1:65688579-65688598	None:intergenic	30.0%
	TTGATTTCAAGAAAAACGAG+TGG	-	chr8_1:65688644-65688663	None:intergenic	30.0%
!	AAAATGTTCTTCCTTGTTGT+TGG	+	chr8_1:65688752-65688771	Msa1207880:CDS	30.0%
	GATAATATCTCAAATCCAGA+CGG	-	chr8_1:65688924-65688943	None:intergenic	30.0%
!!!	ATTAGTGTATTTTTTGGTGG+AGG	+	chr8_1:65688950-65688969	Msa1207880:CDS	30.0%
!!!	ACATGATTACATTTTGGTTG+TGG	+	chr8_1:65689150-65689169	Msa1207880:CDS	30.0%
	AAAAGGAAAATGACAGAAAG+TGG	-	chr8_1:65689220-65689239	None:intergenic	30.0%
	TTCCAAAAGGACATTCATTA+CGG	-	chr8_1:65689268-65689287	None:intergenic	30.0%
	TTACGTCCAATTGTTTGAAT+GGG	-	chr8_1:65689668-65689687	None:intergenic	30.0%
	ATTACGTCCAATTGTTTGAA+TGG	-	chr8_1:65689669-65689688	None:intergenic	30.0%
	TCATAAACAGGTTTCTTCTA+AGG	-	chr8_1:65689720-65689739	None:intergenic	30.0%
	AAGAAACCTGTTTATGATCT+TGG	+	chr8_1:65689723-65689742	Msa1207880:intron	30.0%
	AGAAACCTGTTTATGATCTT+GGG	+	chr8_1:65689724-65689743	Msa1207880:intron	30.0%
!	TGGAAACAGAATTTTGTTGA+AGG	+	chr8_1:65689764-65689783	Msa1207880:intron	30.0%
	ACTACAGCATAAACTTTCAA+AGG	-	chr8_1:65689874-65689893	None:intergenic	30.0%
	TATGTGAATATGAAGTGAGA+TGG	-	chr8_1:65690034-65690053	None:intergenic	30.0%
!	GATCGATTTCGAAAAGATAA+AGG	-	chr8_1:65690152-65690171	None:intergenic	30.0%
	TACTCACTTGGAAAAGATAA+AGG	+	chr8_1:65690455-65690474	Msa1207880:intron	30.0%
	TAGAAGCGAATTAAAGGAAT+TGG	-	chr8_1:65690596-65690615	None:intergenic	30.0%
	TAACTGTAGAAGCGAATTAA+AGG	-	chr8_1:65690602-65690621	None:intergenic	30.0%
	TTAAATCCTACAGACAAGAT+TGG	-	chr8_1:65690844-65690863	None:intergenic	30.0%
	ATCATGCTGATGTTTATCAA+TGG	-	chr8_1:65690877-65690896	None:intergenic	30.0%
	TCTATCTAATGAAAAAGAGG+GGG	-	chr8_1:65690904-65690923	None:intergenic	30.0%
	TGCTTTACTTATCATATGTC+AGG	+	chr8_1:65690988-65691007	Msa1207880:intron	30.0%
!	ATATATTTTGTGGGATTCCA+GGG	-	chr8_1:65691023-65691042	None:intergenic	30.0%
!	AATATATTTTGTGGGATTCC+AGG	-	chr8_1:65691024-65691043	None:intergenic	30.0%
	TTGCAAATCAATTTCACATG+TGG	-	chr8_1:65691217-65691236	None:intergenic	30.0%
!!!	TTTTGCTTTGTTTATGTCAC+AGG	+	chr8_1:65691240-65691259	Msa1207880:intron	30.0%
!!	TTTGCTTTGTTTATGTCACA+GGG	+	chr8_1:65691241-65691260	Msa1207880:intron	30.0%
	TCAGAAGAAGATACTTCAAA+AGG	+	chr8_1:65691273-65691292	Msa1207880:CDS	30.0%
	CAGCTAAATCAATTCACAAA+AGG	-	chr8_1:65691456-65691475	None:intergenic	30.0%
!	TTGTGAATTGATTTAGCTGA+AGG	+	chr8_1:65691457-65691476	Msa1207880:intron	30.0%
	TGGAAGATCATATAATGAAC+AGG	+	chr8_1:65691508-65691527	Msa1207880:CDS	30.0%
!!!	GTGATTTTGTTTTACAAGAG+TGG	+	chr8_1:65691696-65691715	Msa1207880:three_prime_UTR	30.0%
!!!	TGTTTTGGAATTCGAACATT+CGG	+	chr8_1:65691746-65691765	Msa1207880:three_prime_UTR	30.0%
!	TAATGTAGAGAGAGTGTGTA+TGG	-	chr8_1:65688381-65688400	None:intergenic	35.0%
!	AAAGTAATCGGATTTGGTAG+CGG	-	chr8_1:65688567-65688586	None:intergenic	35.0%
	GAAGAGAAAGTAATCGGATT+TGG	-	chr8_1:65688573-65688592	None:intergenic	35.0%
	TGGAGAGATAAACGAACTTT+GGG	-	chr8_1:65688701-65688720	None:intergenic	35.0%
	ATGGAGAGATAAACGAACTT+TGG	-	chr8_1:65688702-65688721	None:intergenic	35.0%
	ATTGTGATTACCTTGATGGA+AGG	-	chr8_1:65688800-65688819	None:intergenic	35.0%
	TGTGATTGTGATTACCTTGA+TGG	-	chr8_1:65688804-65688823	None:intergenic	35.0%
	GTAGATGATTGGAATTAGGA+CGG	+	chr8_1:65688887-65688906	Msa1207880:intron	35.0%
	TAGATGATTGGAATTAGGAC+GGG	+	chr8_1:65688888-65688907	Msa1207880:intron	35.0%
	TGGAGGATTATACGAATTAC+TGG	+	chr8_1:65688967-65688986	Msa1207880:CDS	35.0%
	CATGAATATCAAGCTCCAAT+TGG	+	chr8_1:65689044-65689063	Msa1207880:CDS	35.0%
	CAAAATGTAATCATGTGACC+AGG	-	chr8_1:65689146-65689165	None:intergenic	35.0%
!	CTGGTCACATGATTACATTT+TGG	+	chr8_1:65689144-65689163	Msa1207880:CDS	35.0%
	AAAGGACATTCATTACGGTT+TGG	-	chr8_1:65689263-65689282	None:intergenic	35.0%
!	AACCGTAATGAATGTCCTTT+TGG	+	chr8_1:65689263-65689282	Msa1207880:intron	35.0%
	ATCTCAAGGATCTGTAATAG+TGG	+	chr8_1:65689298-65689317	Msa1207880:intron	35.0%
	TCTCAAGGATCTGTAATAGT+GGG	+	chr8_1:65689299-65689318	Msa1207880:intron	35.0%
!!!	TGGGTTGCTTTTTGCTTTTA+TGG	+	chr8_1:65689318-65689337	Msa1207880:intron	35.0%
!!!	GGGTTGCTTTTTGCTTTTAT+GGG	+	chr8_1:65689319-65689338	Msa1207880:intron	35.0%
!!!	GGTTGCTTTTTGCTTTTATG+GGG	+	chr8_1:65689320-65689339	Msa1207880:intron	35.0%
	ACAAGCAAAGGTTGTTAAAG+TGG	-	chr8_1:65689517-65689536	None:intergenic	35.0%
	TAACAACCTTTGCTTGTATG+AGG	+	chr8_1:65689520-65689539	Msa1207880:intron	35.0%
!	GATGCTTCAATTTTCTGACA+CGG	+	chr8_1:65689547-65689566	Msa1207880:intron	35.0%
	TGCATTTGGCTGTAAATTGA+TGG	-	chr8_1:65689628-65689647	None:intergenic	35.0%
	GCCAAATGCAGAATTATTGT+CGG	+	chr8_1:65689638-65689657	Msa1207880:intron	35.0%
	ACCGACAATAATTCTGCATT+TGG	-	chr8_1:65689642-65689661	None:intergenic	35.0%
	GAAACCTGTTTATGATCTTG+GGG	+	chr8_1:65689725-65689744	Msa1207880:intron	35.0%
	AAACCTGTTTATGATCTTGG+GGG	+	chr8_1:65689726-65689745	Msa1207880:intron	35.0%
	AAACTTTCAAAGGTTTGTCC+AGG	-	chr8_1:65689864-65689883	None:intergenic	35.0%
	TACACACACACTTACACATA+TGG	+	chr8_1:65690060-65690079	Msa1207880:intron	35.0%
!	GAAGGACAATTTAGGGATTT+TGG	+	chr8_1:65690332-65690351	Msa1207880:intron	35.0%
	TTAGCAATGGTTGTATAAGG+TGG	-	chr8_1:65690389-65690408	None:intergenic	35.0%
	GACTTAGCAATGGTTGTATA+AGG	-	chr8_1:65690392-65690411	None:intergenic	35.0%
	AGTTCATATGCTGTGAGAAA+AGG	+	chr8_1:65690423-65690442	Msa1207880:intron	35.0%
	AGGACAAAAGTTTACTCACT+TGG	+	chr8_1:65690443-65690462	Msa1207880:intron	35.0%
!!	TCAAATTCAAGTTGCAAGCA+CGG	-	chr8_1:65690813-65690832	None:intergenic	35.0%
	TAATTGCCAATCTTGTCTGT+AGG	+	chr8_1:65690835-65690854	Msa1207880:intron	35.0%
	CCAAATTTCAATGCAGAAAC+TGG	-	chr8_1:65690947-65690966	None:intergenic	35.0%
	CCAGTTTCTGCATTGAAATT+TGG	+	chr8_1:65690944-65690963	Msa1207880:intron	35.0%
!	TATATTTTGTGGGATTCCAG+GGG	-	chr8_1:65691022-65691041	None:intergenic	35.0%
	CACGATTACCATCATTATGT+TGG	+	chr8_1:65691068-65691087	Msa1207880:CDS	35.0%
	GATTACCATCATTATGTTGG+AGG	+	chr8_1:65691071-65691090	Msa1207880:CDS	35.0%
	TTTGTCCTCCAACATAATGA+TGG	-	chr8_1:65691079-65691098	None:intergenic	35.0%
	AAACTGATGCAAAATTGCTC+TGG	-	chr8_1:65691103-65691122	None:intergenic	35.0%
	TTACATCTATGGAACAGACA+AGG	+	chr8_1:65691136-65691155	Msa1207880:CDS	35.0%
!	TGTTTATGTCACAGGGTTTT+CGG	+	chr8_1:65691248-65691267	Msa1207880:intron	35.0%
	AAGCTAATTAAAGCCACAAC+AGG	-	chr8_1:65691337-65691356	None:intergenic	35.0%
	TCACAAAAGGACAATGAAGT+GGG	-	chr8_1:65691443-65691462	None:intergenic	35.0%
	TTCACAAAAGGACAATGAAG+TGG	-	chr8_1:65691444-65691463	None:intergenic	35.0%
!!!	GAATGAGACAGAAGCATTTT+AGG	+	chr8_1:65691545-65691564	Msa1207880:exon	35.0%
!!!	TTTGTTTTACAAGAGTGGGT+TGG	+	chr8_1:65691701-65691720	Msa1207880:three_prime_UTR	35.0%
!!	TTGTTTTACAAGAGTGGGTT+GGG	+	chr8_1:65691702-65691721	Msa1207880:three_prime_UTR	35.0%
	TAAGAATGATCATTTCCCTG+TGG	+	chr8_1:65691787-65691806	Msa1207880:three_prime_UTR	35.0%
	TCCAGAATTTACAATCCACA+GGG	-	chr8_1:65691805-65691824	None:intergenic	35.0%
	TTCCAGAATTTACAATCCAC+AGG	-	chr8_1:65691806-65691825	None:intergenic	35.0%
	TGTCTGTTAACGCAAACAAG+CGG	-	chr8_1:65688328-65688347	None:intergenic	40.0%
!!!	TCTCTAGGGTTTCTTTTCTC+CGG	+	chr8_1:65688445-65688464	Msa1207880:five_prime_UTR	40.0%
	GTAGTTGAACCATAGGGTTT+CGG	-	chr8_1:65688543-65688562	None:intergenic	40.0%
	TCAAGAAAAACGAGTGGAAG+AGG	-	chr8_1:65688638-65688657	None:intergenic	40.0%
	GGATCTTGTACTCATCGAAA+GGG	-	chr8_1:65688676-65688695	None:intergenic	40.0%
	TGGATCTTGTACTCATCGAA+AGG	-	chr8_1:65688677-65688696	None:intergenic	40.0%
!	GGATAAGAAACGAGTTGAAG+AGG	-	chr8_1:65688779-65688798	None:intergenic	40.0%
	CGTTTCTTATCCTTCCATCA+AGG	+	chr8_1:65688787-65688806	Msa1207880:CDS	40.0%
	AGATGATTGGAATTAGGACG+GGG	+	chr8_1:65688889-65688908	Msa1207880:intron	40.0%
	ATCTCAAATCCAGACGGTAA+CGG	-	chr8_1:65688918-65688937	None:intergenic	40.0%
	TCAAGCTCCAATTGGATTTG+CGG	+	chr8_1:65689052-65689071	Msa1207880:CDS	40.0%
	GTGTATCAATGGCTTCAACT+TGG	-	chr8_1:65689187-65689206	None:intergenic	40.0%
!!!	TGTCCTTTTGGAAAGTGCTT+TGG	+	chr8_1:65689275-65689294	Msa1207880:intron	40.0%
!	GATCCAAAGCACTTTCCAAA+AGG	-	chr8_1:65689281-65689300	None:intergenic	40.0%
	TGCAACTATAGATCTCACTC+AGG	-	chr8_1:65689346-65689365	None:intergenic	40.0%
	AGCTGATACAGTTGCAATTG+CGG	+	chr8_1:65689472-65689491	Msa1207880:intron	40.0%
	ATACAGTTGCAATTGCGGTT+GGG	+	chr8_1:65689477-65689496	Msa1207880:intron	40.0%
	TCACAACCTCATACAAGCAA+AGG	-	chr8_1:65689529-65689548	None:intergenic	40.0%
	GGTTCACCCATTCAAACAAT+TGG	+	chr8_1:65689659-65689678	Msa1207880:intron	40.0%
	AACCTGTTTATGATCTTGGG+GGG	+	chr8_1:65689727-65689746	Msa1207880:intron	40.0%
	CACCAAGACGTAAATCTTTC+CGG	+	chr8_1:65689914-65689933	Msa1207880:intron	40.0%
!	TAGGGATTTTGGATGACAGT+TGG	+	chr8_1:65690343-65690362	Msa1207880:intron	40.0%
!	AGGGATTTTGGATGACAGTT+GGG	+	chr8_1:65690344-65690363	Msa1207880:intron	40.0%
!!	GTTAGTGATTAGTCTTGCTG+AGG	+	chr8_1:65690726-65690745	Msa1207880:intron	40.0%
	CAATCCACCAGATATAAGCA+CGG	-	chr8_1:65690752-65690771	None:intergenic	40.0%
	TTATATCTGGTGGAATGTCC+AGG	+	chr8_1:65690787-65690806	Msa1207880:intron	40.0%
	ATGCAGAAACTGGAGAAGAA+TGG	-	chr8_1:65690937-65690956	None:intergenic	40.0%
!!	TGGAAGGTGTTTGAGCAAAA+TGG	-	chr8_1:65691370-65691389	None:intergenic	40.0%
	CACAAAAGGACAATGAAGTG+GGG	-	chr8_1:65691442-65691461	None:intergenic	40.0%
	CTGAAGGAAGATTCGACAAA+TGG	+	chr8_1:65691473-65691492	Msa1207880:CDS	40.0%
!!!	TGAGACAGAAGCATTTTAGG+TGG	+	chr8_1:65691548-65691567	Msa1207880:exon	40.0%
	AGGTGGTGTATGTTGTATGT+TGG	+	chr8_1:65691565-65691584	Msa1207880:three_prime_UTR	40.0%
!!	AGATGTCTTTGGTTAGCTTC+AGG	+	chr8_1:65691641-65691660	Msa1207880:three_prime_UTR	40.0%
	CAGGATGAAGACTAGTAGAA+CGG	+	chr8_1:65691660-65691679	Msa1207880:three_prime_UTR	40.0%
	AGGATGAAGACTAGTAGAAC+GGG	+	chr8_1:65691661-65691680	Msa1207880:three_prime_UTR	40.0%
!!!	TGTTTTACAAGAGTGGGTTG+GGG	+	chr8_1:65691703-65691722	Msa1207880:three_prime_UTR	40.0%
!	TCCCTGTGGATTGTAAATTC+TGG	+	chr8_1:65691801-65691820	Msa1207880:three_prime_UTR	40.0%
!	CTTTTTGAATTGCAACCCAG+AGG	-	chr8_1:65691847-65691866	None:intergenic	40.0%
!	TGTAGAGAGAGTGTGTATGG+TGG	-	chr8_1:65688378-65688397	None:intergenic	45.0%
	AGCGGAGTAGTTGAACCATA+GGG	-	chr8_1:65688549-65688568	None:intergenic	45.0%
	TAGCGGAGTAGTTGAACCAT+AGG	-	chr8_1:65688550-65688569	None:intergenic	45.0%
	GAGATAAACGAACTTTGGGC+TGG	-	chr8_1:65688697-65688716	None:intergenic	45.0%
	GTTGAAGAGGACCAACAACA+AGG	-	chr8_1:65688766-65688785	None:intergenic	45.0%
!	TTGGGCGGAGATCTTGATTT+TGG	+	chr8_1:65689088-65689107	Msa1207880:CDS	45.0%
!	TGGGCGGAGATCTTGATTTT+GGG	+	chr8_1:65689089-65689108	Msa1207880:CDS	45.0%
!	TTGGGGATTCCGTCTTTTCT+TGG	+	chr8_1:65689107-65689126	Msa1207880:CDS	45.0%
!	GATTCCGTCTTTTCTTGGAC+CGG	+	chr8_1:65689112-65689131	Msa1207880:CDS	45.0%
	ATAGCCGGTCCAAGAAAAGA+CGG	-	chr8_1:65689119-65689138	None:intergenic	45.0%
	GAAGCCATTGATACACACAG+CGG	+	chr8_1:65689191-65689210	Msa1207880:CDS	45.0%
	AAGCCATTGATACACACAGC+GGG	+	chr8_1:65689192-65689211	Msa1207880:CDS	45.0%
!!	GGAAAGTGCTTTGGATCTCA+AGG	+	chr8_1:65689284-65689303	Msa1207880:intron	45.0%
	GATACAGTTGCAATTGCGGT+TGG	+	chr8_1:65689476-65689495	Msa1207880:intron	45.0%
	ACCTGTTTATGATCTTGGGG+GGG	+	chr8_1:65689728-65689747	Msa1207880:intron	45.0%
	TGCCGGAAAGATTTACGTCT+TGG	-	chr8_1:65689919-65689938	None:intergenic	45.0%
!	TTCCGGCATTTTCTGTCTCA+AGG	+	chr8_1:65689931-65689950	Msa1207880:intron	45.0%
!	TCCGGCATTTTCTGTCTCAA+GGG	+	chr8_1:65689932-65689951	Msa1207880:intron	45.0%
	ACCCTTGAGACAGAAAATGC+CGG	-	chr8_1:65689936-65689955	None:intergenic	45.0%
	TTTGGATGACAGTTGGGAGT+TGG	+	chr8_1:65690350-65690369	Msa1207880:intron	45.0%
	TTGGATGACAGTTGGGAGTT+GGG	+	chr8_1:65690351-65690370	Msa1207880:intron	45.0%
	AAGCCACAACAGGCAAATCA+CGG	-	chr8_1:65691327-65691346	None:intergenic	45.0%
	GGATGAAGACTAGTAGAACG+GGG	+	chr8_1:65691662-65691681	Msa1207880:three_prime_UTR	45.0%
	TGAAACAGACTTCCTCCTCT+GGG	+	chr8_1:65691829-65691848	Msa1207880:three_prime_UTR	45.0%
	TTTGAATTGCAACCCAGAGG+AGG	-	chr8_1:65691844-65691863	None:intergenic	45.0%
	ACCCTAGAGAGAGAGATTGC+CGG	-	chr8_1:65688435-65688454	None:intergenic	50.0%
	CGTCGTGGAGAGATTGGTAA+GGG	-	chr8_1:65688487-65688506	None:intergenic	50.0%
	ATTGCGACCGAGAGAGATCT+CGG	-	chr8_1:65688510-65688529	None:intergenic	50.0%
	AACGAGTGGAAGAGGAACGA+GGG	-	chr8_1:65688630-65688649	None:intergenic	50.0%
	AAACGAGTGGAAGAGGAACG+AGG	-	chr8_1:65688631-65688650	None:intergenic	50.0%
!!	TAAGGCGCCGCAAATCCAAT+TGG	-	chr8_1:65689062-65689081	None:intergenic	50.0%
	ATCTCCGCCCAATGTGCATA+AGG	-	chr8_1:65689080-65689099	None:intergenic	50.0%
!	GGGCGGAGATCTTGATTTTG+GGG	+	chr8_1:65689090-65689109	Msa1207880:CDS	50.0%
!	GTCTTTTCTTGGACCGGCTA+TGG	+	chr8_1:65689118-65689137	Msa1207880:CDS	50.0%
	ATGTGACCAGGAACCATAGC+CGG	-	chr8_1:65689134-65689153	None:intergenic	50.0%
	GTACCCGCTGTGTGTATCAA+TGG	-	chr8_1:65689198-65689217	None:intergenic	50.0%
	ACCCCCCCAAGATCATAAAC+AGG	-	chr8_1:65689732-65689751	None:intergenic	50.0%
	TGTTTATGATCTTGGGGGGG+TGG	+	chr8_1:65689731-65689750	Msa1207880:intron	50.0%
	GTTTATGATCTTGGGGGGGT+GGG	+	chr8_1:65689732-65689751	Msa1207880:intron	50.0%
	TTTATGATCTTGGGGGGGTG+GGG	+	chr8_1:65689733-65689752	Msa1207880:intron	50.0%
	ATGTCAGGTATGACTTCCCC+TGG	+	chr8_1:65691003-65691022	Msa1207880:intron	50.0%
	TGCTCAGCGCCACCATAAAA+TGG	-	chr8_1:65691047-65691066	None:intergenic	50.0%
!	GAACCGTGATTTGCCTGTTG+TGG	+	chr8_1:65691321-65691340	Msa1207880:intron	50.0%
	ATTCGACAAATGGTGCAGCG+CGG	+	chr8_1:65691483-65691502	Msa1207880:CDS	50.0%
	GTGAAACAGACTTCCTCCTC+TGG	+	chr8_1:65691828-65691847	Msa1207880:three_prime_UTR	50.0%
!!	GTGTATGGTGGATGATGCGC+TGG	-	chr8_1:65688366-65688385	None:intergenic	55.0%
	CTAGAGAGAGAGATTGCCGG+CGG	-	chr8_1:65688432-65688451	None:intergenic	55.0%
	GCCGGCAATCTCTCTCTCTA+GGG	+	chr8_1:65688431-65688450	Msa1207880:five_prime_UTR	55.0%
	TGGTAAGGGATCATCGTCGC+CGG	-	chr8_1:65688473-65688492	None:intergenic	55.0%
	GCGTCGTGGAGAGATTGGTA+AGG	-	chr8_1:65688488-65688507	None:intergenic	55.0%
	TCACCTTCGCCGAAACCCTA+TGG	+	chr8_1:65688531-65688550	Msa1207880:CDS	55.0%
	GAACCATAGGGTTTCGGCGA+AGG	-	chr8_1:65688537-65688556	None:intergenic	55.0%
	CGAGGGAGAAGATGAGGAAG+AGG	-	chr8_1:65688613-65688632	None:intergenic	55.0%
	GAGGAACGAGGGAGAAGATG+AGG	-	chr8_1:65688619-65688638	None:intergenic	55.0%
	TTGCGGCGCCTTATGCACAT+TGG	+	chr8_1:65689069-65689088	Msa1207880:CDS	55.0%
	TGCGGCGCCTTATGCACATT+GGG	+	chr8_1:65689070-65689089	Msa1207880:CDS	55.0%
	TTATGATCTTGGGGGGGTGG+GGG	+	chr8_1:65689734-65689753	Msa1207880:intron	55.0%
	GCTGAGGCCGTGCTTATATC+TGG	+	chr8_1:65690742-65690761	Msa1207880:intron	55.0%
	GAGGCCGTGCTTATATCTGG+TGG	+	chr8_1:65690745-65690764	Msa1207880:intron	55.0%
!!	TTCAAGTTGCAAGCACGGCC+TGG	-	chr8_1:65690808-65690827	None:intergenic	55.0%
	ACAAATGGTGCAGCGCGGAA+TGG	+	chr8_1:65691488-65691507	Msa1207880:CDS	55.0%
!	GATGCGCTGGACTGGATGGA+TGG	-	chr8_1:65688353-65688372	None:intergenic	60.0%
!	GGATGATGCGCTGGACTGGA+TGG	-	chr8_1:65688357-65688376	None:intergenic	60.0%
!	TGGTGGATGATGCGCTGGAC+TGG	-	chr8_1:65688361-65688380	None:intergenic	60.0%
	CGCCGGCAATCTCTCTCTCT+AGG	+	chr8_1:65688430-65688449	Msa1207880:five_prime_UTR	60.0%
!	GGGTTTCTTTTCTCCGGCGC+CGG	+	chr8_1:65688451-65688470	Msa1207880:five_prime_UTR	60.0%
	TCTCGGCGTCGTGGAGAGAT+TGG	-	chr8_1:65688493-65688512	None:intergenic	60.0%
	CACGACGCCGAGATCTCTCT+CGG	+	chr8_1:65688500-65688519	Msa1207880:CDS	60.0%
	ACGGGGTTACCGTTACCGTC+TGG	+	chr8_1:65688906-65688925	Msa1207880:CDS	60.0%
	GGCGCCTTATGCACATTGGG+CGG	+	chr8_1:65689073-65689092	Msa1207880:CDS	60.0%
	CTTGGACCGGCTATGGTTCC+TGG	+	chr8_1:65689125-65689144	Msa1207880:CDS	60.0%
	TATGATCTTGGGGGGGTGGG+GGG	+	chr8_1:65689735-65689754	Msa1207880:intron	60.0%
	AGAGAGAGATTGCCGGCGGC+GGG	-	chr8_1:65688428-65688447	None:intergenic	65.0%
	GAGAGAGAGATTGCCGGCGG+CGG	-	chr8_1:65688429-65688448	None:intergenic	65.0%
	CGAGAGAGATCTCGGCGTCG+TGG	-	chr8_1:65688502-65688521	None:intergenic	65.0%
	AGATTGCCGGCGGCGGGAGA+GGG	-	chr8_1:65688422-65688441	None:intergenic	70.0%
	GATTGCCGGCGGCGGGAGAG+GGG	-	chr8_1:65688421-65688440	None:intergenic	75.0%
	GAGATTGCCGGCGGCGGGAG+AGG	-	chr8_1:65688423-65688442	None:intergenic	75.0%
	GGGATCATCGTCGCCGGCGC+CGG	-	chr8_1:65688467-65688486	None:intergenic	75.0%
!	CGGCGGCGGGAGAGGGGAGA+GGG	-	chr8_1:65688415-65688434	None:intergenic	80.0%
!	CCTCTCCCCTCTCCCGCCGC+CGG	+	chr8_1:65688413-65688432	Msa1207880:five_prime_UTR	80.0%
!	GGGGGGGTGGGGGGCTCTGT+TGG	+	chr8_1:65689744-65689763	Msa1207880:intron	80.0%
!	CCGGCGGCGGGAGAGGGGAG+AGG	-	chr8_1:65688416-65688435	None:intergenic	85.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	65688315	65691889	65688315	ID=Msa1207880;Name=Msa1207880
chr8_1	mRNA	65688315	65691889	65688315	ID=Msa1207880-mRNA-1;Parent=Msa1207880;Name=Msa1207880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=164\|1\|1\|1\|1\|1\|5\|339\|303
chr8_1	exon	65688315	65688808	65688315	ID=Msa1207880-mRNA-1:exon:21554;Parent=Msa1207880-mRNA-1
chr8_1	exon	65688891	65689213	65688891	ID=Msa1207880-mRNA-1:exon:21555;Parent=Msa1207880-mRNA-1
chr8_1	exon	65691010	65691157	65691010	ID=Msa1207880-mRNA-1:exon:21556;Parent=Msa1207880-mRNA-1
chr8_1	exon	65691262	65691294	65691262	ID=Msa1207880-mRNA-1:exon:21557;Parent=Msa1207880-mRNA-1
chr8_1	exon	65691473	65691889	65691473	ID=Msa1207880-mRNA-1:exon:21558;Parent=Msa1207880-mRNA-1
chr8_1	five_prime_UTR	65688315	65688478	65688315	ID=Msa1207880-mRNA-1:five_prime_utr;Parent=Msa1207880-mRNA-1
chr8_1	CDS	65688479	65688808	65688479	ID=Msa1207880-mRNA-1:cds;Parent=Msa1207880-mRNA-1
chr8_1	CDS	65688891	65689213	65688891	ID=Msa1207880-mRNA-1:cds;Parent=Msa1207880-mRNA-1
chr8_1	CDS	65691010	65691157	65691010	ID=Msa1207880-mRNA-1:cds;Parent=Msa1207880-mRNA-1
chr8_1	CDS	65691262	65691294	65691262	ID=Msa1207880-mRNA-1:cds;Parent=Msa1207880-mRNA-1
chr8_1	CDS	65691473	65691550	65691473	ID=Msa1207880-mRNA-1:cds;Parent=Msa1207880-mRNA-1
chr8_1	three_prime_UTR	65691551	65691889	65691551	ID=Msa1207880-mRNA-1:three_prime_utr;Parent=Msa1207880-mRNA-1

Gene Sequence

>Msa1207880

ATGATCCCTTACCAATCTCTCCACGACGCCGAGATCTCTCTCGGTCGCAATCTCACCTTCGCCGAAACCCTATGGTTCAACTACTCCGCTACCAAATCCGATTACTTTCTCTTCTGTCATAACATTCTCTTCCTCTTCCTCATCTTCTCCCTCGTTCCTCTTCCACTCGTTTTTCTTGAAATCAAACGCTTATACCCTTTCGATGAGTACAAGATCCAGCCCAAAGTTCGTTTATCTCTCCATGAAATGCTTAATTGCTATAAAGATGTCTTGAAAATGTTCTTCCTTGTTGTTGGTCCTCTTCAACTCGTTTCTTATCCTTCCATCAAGATGATTGGAATTAGGACGGGGTTACCGTTACCGTCTGGATTTGAGATATTATCGCAATTATTAGTGTATTTTTTGGTGGAGGATTATACGAATTACTGGATCCATAGATTTCTGCATAATAAATGGGGTTATGAGAAGATTCATCGAGTTCATCATGAATATCAAGCTCCAATTGGATTTGCGGCGCCTTATGCACATTGGGCGGAGATCTTGATTTTGGGGATTCCGTCTTTTCTTGGACCGGCTATGGTTCCTGGTCACATGATTACATTTTGGTTGTGGATTGCATTGCGCCAAGTTGAAGCCATTGATACACACAGCGGGTATGACTTCCCCTGGAATCCCACAAAATATATTCCATTTTATGGTGGCGCTGAGCATCACGATTACCATCATTATGTTGGAGGACAAAGCCAGAGCAATTTTGCATCAGTTTTCACATATTGTGATTACATCTATGGAACAGACAAGGGTTTTCGGTATCAGAAGAAGATACTTCAAAAGCTGAAGGAAGATTCGACAAATGGTGCAGCGCGGAATGGAAGATCATATAATGAACAGGACAATTATAAATCTGAATGA

Protein sequence

>Msa1207880

MIPYQSLHDAEISLGRNLTFAETLWFNYSATKSDYFLFCHNILFLFLIFSLVPLPLVFLEIKRLYPFDEYKIQPKVRLSLHEMLNCYKDVLKMFFLVVGPLQLVSYPSIKMIGIRTGLPLPSGFEILSQLLVYFLVEDYTNYWIHRFLHNKWGYEKIHRVHHEYQAPIGFAAPYAHWAEILILGIPSFLGPAMVPGHMITFWLWIALRQVEAIDTHSGYDFPWNPTKYIPFYGGAEHHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGFRYQKKILQKLKEDSTNGAARNGRSYNEQDNYKSE*