Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480940 | XP_003608797.1 | 98.680 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480940 | sp|Q8L7W5|SMO11_ARATH | 76.109 | 293 | 68 | 1 | 1 | 291 | 1 | 293 | 1.07e-174 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480940 | G7JK82 | 98.680 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0480940 | -0.811927 | 5.481402e-51 | -8.615850e-47 |
| Msa0009290 | Msa0480940 | 0.813058 | 3.102405e-51 | -8.615850e-47 |
| Msa0011060 | Msa0480940 | -0.808784 | 2.612520e-50 | -8.615850e-47 |
| Msa0011100 | Msa0480940 | -0.807707 | 4.431843e-50 | -8.615850e-47 |
| Msa0014970 | Msa0480940 | -0.832858 | 7.434209e-56 | -8.615850e-47 |
| Msa0025060 | Msa0480940 | -0.818197 | 2.222536e-52 | -8.615850e-47 |
| Msa0027610 | Msa0480940 | -0.804713 | 1.893108e-49 | -8.615850e-47 |
| Msa0029730 | Msa0480940 | 0.830122 | 3.508113e-55 | -8.615850e-47 |
| Msa0030760 | Msa0480940 | -0.800767 | 1.234772e-48 | -8.615850e-47 |
| Msa0034050 | Msa0480940 | -0.830116 | 3.520549e-55 | -8.615850e-47 |
| Msa0036560 | Msa0480940 | -0.809660 | 1.695829e-50 | -8.615850e-47 |
| Msa0039590 | Msa0480940 | -0.800734 | 1.254027e-48 | -8.615850e-47 |
| Msa0050320 | Msa0480940 | -0.867235 | 1.588967e-65 | -8.615850e-47 |
| Msa0053260 | Msa0480940 | -0.804539 | 2.058333e-49 | -8.615850e-47 |
| Msa0067750 | Msa0480940 | -0.805850 | 1.094024e-49 | -8.615850e-47 |
| Msa0071640 | Msa0480940 | 0.819560 | 1.089244e-52 | -8.615850e-47 |
| Msa0075370 | Msa0480940 | -0.808606 | 2.851453e-50 | -8.615850e-47 |
| Msa0081700 | Msa0480940 | -0.836243 | 1.048862e-56 | -8.615850e-47 |
| Msa0089470 | Msa0480940 | -0.801561 | 8.495300e-49 | -8.615850e-47 |
| Msa0090350 | Msa0480940 | -0.801239 | 9.890559e-49 | -8.615850e-47 |
| Msa0094900 | Msa0480940 | -0.816151 | 6.411848e-52 | -8.615850e-47 |
| Msa0098500 | Msa0480940 | -0.803729 | 3.034030e-49 | -8.615850e-47 |
| Msa0098750 | Msa0480940 | -0.809862 | 1.533836e-50 | -8.615850e-47 |
| Msa0099090 | Msa0480940 | -0.832769 | 7.823233e-56 | -8.615850e-47 |
| Msa0108500 | Msa0480940 | -0.825530 | 4.457204e-54 | -8.615850e-47 |
| Msa0121480 | Msa0480940 | -0.806809 | 6.867203e-50 | -8.615850e-47 |
| Msa0127910 | Msa0480940 | -0.809249 | 2.077359e-50 | -8.615850e-47 |
| Msa0135470 | Msa0480940 | -0.801288 | 9.664237e-49 | -8.615850e-47 |
| Msa0138340 | Msa0480940 | -0.813719 | 2.220249e-51 | -8.615850e-47 |
| Msa0139280 | Msa0480940 | -0.820940 | 5.257715e-53 | -8.615850e-47 |
| Msa0147960 | Msa0480940 | -0.814830 | 1.261811e-51 | -8.615850e-47 |
| Msa0154720 | Msa0480940 | -0.867094 | 1.762561e-65 | -8.615850e-47 |
| Msa0160650 | Msa0480940 | -0.802291 | 6.014503e-49 | -8.615850e-47 |
| Msa0167800 | Msa0480940 | -0.801505 | 8.725376e-49 | -8.615850e-47 |
| Msa0169710 | Msa0480940 | 0.819908 | 9.072379e-53 | -8.615850e-47 |
| Msa0174060 | Msa0480940 | -0.830817 | 2.371545e-55 | -8.615850e-47 |
| Msa0178440 | Msa0480940 | -0.816689 | 4.859541e-52 | -8.615850e-47 |
| Msa0183840 | Msa0480940 | 0.805541 | 1.270045e-49 | -8.615850e-47 |
| Msa0194750 | Msa0480940 | -0.835279 | 1.840172e-56 | -8.615850e-47 |
| Msa0195030 | Msa0480940 | 0.829808 | 4.183359e-55 | -8.615850e-47 |
| Msa0208040 | Msa0480940 | -0.812781 | 3.567046e-51 | -8.615850e-47 |
| Msa0208710 | Msa0480940 | -0.839393 | 1.627956e-57 | -8.615850e-47 |
| Msa0209370 | Msa0480940 | -0.829865 | 4.052770e-55 | -8.615850e-47 |
| Msa0209590 | Msa0480940 | -0.804538 | 2.059094e-49 | -8.615850e-47 |
| Msa0225070 | Msa0480940 | -0.825174 | 5.413860e-54 | -8.615850e-47 |
| Msa0226580 | Msa0480940 | -0.821051 | 4.958032e-53 | -8.615850e-47 |
| Msa0227970 | Msa0480940 | -0.803498 | 3.386972e-49 | -8.615850e-47 |
| Msa0236690 | Msa0480940 | -0.831652 | 1.478322e-55 | -8.615850e-47 |
| Msa0237180 | Msa0480940 | 0.832438 | 9.452525e-56 | -8.615850e-47 |
| Msa0238420 | Msa0480940 | 0.806594 | 7.625451e-50 | -8.615850e-47 |
| Msa0367590 | Msa0480940 | -0.800433 | 1.444554e-48 | -8.615850e-47 |
| Msa0368620 | Msa0480940 | 0.803219 | 3.870315e-49 | -8.615850e-47 |
| Msa0370350 | Msa0480940 | -0.815632 | 8.370013e-52 | -8.615850e-47 |
| Msa0372990 | Msa0480940 | -0.815997 | 6.937841e-52 | -8.615850e-47 |
| Msa0389570 | Msa0480940 | -0.801137 | 1.037747e-48 | -8.615850e-47 |
| Msa0390350 | Msa0480940 | -0.803484 | 3.409594e-49 | -8.615850e-47 |
| Msa0390590 | Msa0480940 | -0.811923 | 5.491799e-51 | -8.615850e-47 |
| Msa0432260 | Msa0480940 | -0.800730 | 1.256599e-48 | -8.615850e-47 |
| Msa0434820 | Msa0480940 | -0.808698 | 2.725520e-50 | -8.615850e-47 |
| Msa0450890 | Msa0480940 | -0.805952 | 1.040989e-49 | -8.615850e-47 |
| Msa0456450 | Msa0480940 | -0.804536 | 2.060744e-49 | -8.615850e-47 |
| Msa0478730 | Msa0480940 | -0.808300 | 3.314646e-50 | -8.615850e-47 |
| Msa0480260 | Msa0480940 | 0.803393 | 3.561443e-49 | -8.615850e-47 |
| Msa0480940 | Msa0483090 | -0.840016 | 1.120530e-57 | -8.615850e-47 |
| Msa0480940 | Msa0522810 | -0.800608 | 1.330647e-48 | -8.615850e-47 |
| Msa0480940 | Msa0526490 | -0.808283 | 3.342096e-50 | -8.615850e-47 |
| Msa0480940 | Msa0526500 | -0.818925 | 1.519438e-52 | -8.615850e-47 |
| Msa0480940 | Msa0527210 | -0.808590 | 2.873768e-50 | -8.615850e-47 |
| Msa0480940 | Msa0538050 | -0.823342 | 1.458322e-53 | -8.615850e-47 |
| Msa0480940 | Msa0540160 | -0.821468 | 3.973239e-53 | -8.615850e-47 |
| Msa0480940 | Msa0545750 | -0.815368 | 9.580079e-52 | -8.615850e-47 |
| Msa0480940 | Msa0555510 | -0.859678 | 3.503853e-63 | -8.615850e-47 |
| Msa0480940 | Msa0559440 | -0.801881 | 7.303521e-49 | -8.615850e-47 |
| Msa0480940 | Msa0563230 | -0.807129 | 5.876391e-50 | -8.615850e-47 |
| Msa0480940 | Msa0563440 | 0.808516 | 2.980691e-50 | -8.615850e-47 |
| Msa0480940 | Msa0575950 | 0.801361 | 9.335614e-49 | -8.615850e-47 |
| Msa0480940 | Msa0585720 | -0.810107 | 1.358842e-50 | -8.615850e-47 |
| Msa0480940 | Msa0604890 | -0.814654 | 1.380376e-51 | -8.615850e-47 |
| Msa0480940 | Msa0608940 | -0.860717 | 1.700511e-63 | -8.615850e-47 |
| Msa0480940 | Msa0612880 | -0.801815 | 7.536203e-49 | -8.615850e-47 |
| Msa0480940 | Msa0617470 | -0.825585 | 4.325457e-54 | -8.615850e-47 |
| Msa0480940 | Msa0625900 | -0.816648 | 4.961687e-52 | -8.615850e-47 |
| Msa0480940 | Msa0632040 | -0.808275 | 3.354515e-50 | -8.615850e-47 |
| Msa0480940 | Msa0646180 | -0.827876 | 1.227778e-54 | -8.615850e-47 |
| Msa0480940 | Msa0649530 | -0.872334 | 3.444907e-67 | -8.615850e-47 |
| Msa0480940 | Msa0659020 | -0.818430 | 1.967937e-52 | -8.615850e-47 |
| Msa0480940 | Msa0663580 | -0.810235 | 1.274904e-50 | -8.615850e-47 |
| Msa0480940 | Msa0663690 | -0.815355 | 9.647008e-52 | -8.615850e-47 |
| Msa0480940 | Msa0691740 | -0.881247 | 2.812538e-70 | -8.615850e-47 |
| Msa0480940 | Msa0700250 | -0.826303 | 2.920839e-54 | -8.615850e-47 |
| Msa0480940 | Msa0714060 | -0.807461 | 4.999310e-50 | -8.615850e-47 |
| Msa0480940 | Msa0714200 | -0.802531 | 5.368818e-49 | -8.615850e-47 |
| Msa0480940 | Msa0730250 | -0.806448 | 8.186147e-50 | -8.615850e-47 |
| Msa0480940 | Msa0733240 | -0.828136 | 1.063270e-54 | -8.615850e-47 |
| Msa0480940 | Msa0742690 | -0.808838 | 2.543476e-50 | -8.615850e-47 |
| Msa0480940 | Msa0756440 | -0.810534 | 1.099141e-50 | -8.615850e-47 |
| Msa0480940 | Msa0768240 | -0.802796 | 4.731969e-49 | -8.615850e-47 |
| Msa0480940 | Msa0770540 | -0.807907 | 4.017728e-50 | -8.615850e-47 |
| Msa0480940 | Msa0774360 | -0.800570 | 1.354628e-48 | -8.615850e-47 |
| Msa0480940 | Msa0779830 | -0.820898 | 5.378374e-53 | -8.615850e-47 |
| Msa0480940 | Msa0812020 | -0.801424 | 9.063858e-49 | -8.615850e-47 |
| Msa0480940 | Msa0827560 | -0.806190 | 9.278901e-50 | -8.615850e-47 |
| Msa0480940 | Msa0835550 | -0.809131 | 2.202336e-50 | -8.615850e-47 |
| Msa0480940 | Msa0849290 | -0.800316 | 1.526265e-48 | -8.615850e-47 |
| Msa0480940 | Msa0852090 | -0.820026 | 8.523907e-53 | -8.615850e-47 |
| Msa0480940 | Msa0853150 | -0.800819 | 1.205011e-48 | -8.615850e-47 |
| Msa0480940 | Msa0880050 | 0.816260 | 6.059954e-52 | -8.615850e-47 |
| Msa0480940 | Msa0906100 | -0.819803 | 9.587565e-53 | -8.615850e-47 |
| Msa0480940 | Msa0917630 | -0.829080 | 6.286620e-55 | -8.615850e-47 |
| Msa0480940 | Msa0931550 | -0.817660 | 2.939367e-52 | -8.615850e-47 |
| Msa0480940 | Msa0934290 | -0.819544 | 1.098654e-52 | -8.615850e-47 |
| Msa0480940 | Msa0967250 | -0.815353 | 9.654040e-52 | -8.615850e-47 |
| Msa0480940 | Msa0967900 | -0.833358 | 5.584504e-56 | -8.615850e-47 |
| Msa0480940 | Msa0971780 | -0.811676 | 6.215045e-51 | -8.615850e-47 |
| Msa0480940 | Msa1031530 | -0.824188 | 9.240799e-54 | -8.615850e-47 |
| Msa0480940 | Msa1039150 | -0.810394 | 1.178260e-50 | -8.615850e-47 |
| Msa0480940 | Msa1056590 | -0.802215 | 6.237237e-49 | -8.615850e-47 |
| Msa0480940 | Msa1070630 | -0.817242 | 3.649232e-52 | -8.615850e-47 |
| Msa0480940 | Msa1078590 | -0.822231 | 2.645373e-53 | -8.615850e-47 |
| Msa0480940 | Msa1078760 | -0.817219 | 3.694300e-52 | -8.615850e-47 |
| Msa0480940 | Msa1093190 | -0.833901 | 4.085298e-56 | -8.615850e-47 |
| Msa0480940 | Msa1112230 | -0.832178 | 1.096327e-55 | -8.615850e-47 |
| Msa0480940 | Msa1124980 | 0.806296 | 8.814801e-50 | -8.615850e-47 |
| Msa0480940 | Msa1136770 | -0.809905 | 1.502095e-50 | -8.615850e-47 |
| Msa0480940 | Msa1143860 | -0.803821 | 2.903272e-49 | -8.615850e-47 |
| Msa0480940 | Msa1147600 | -0.807115 | 5.918206e-50 | -8.615850e-47 |
| Msa0480940 | Msa1158450 | -0.809341 | 1.985396e-50 | -8.615850e-47 |
| Msa0480940 | Msa1158650 | -0.806542 | 7.819211e-50 | -8.615850e-47 |
| Msa0480940 | Msa1167360 | 0.803049 | 4.196866e-49 | -8.615850e-47 |
| Msa0480940 | Msa1169590 | -0.814923 | 1.203177e-51 | -8.615850e-47 |
| Msa0480940 | Msa1182400 | -0.829691 | 4.467239e-55 | -8.615850e-47 |
| Msa0480940 | Msa1197820 | 0.801857 | 7.387611e-49 | -8.615850e-47 |
| Msa0480940 | Msa1199750 | -0.802664 | 5.038680e-49 | -8.615850e-47 |
| Msa0480940 | Msa1207710 | -0.808135 | 3.594563e-50 | -8.615850e-47 |
| Msa0480940 | Msa1207880 | 0.992325 | 1.289587e-192 | -8.615850e-47 |
| Msa0480940 | Msa1225140 | -0.806067 | 9.849833e-50 | -8.615850e-47 |
| Msa0480940 | Msa1228600 | -0.827752 | 1.315433e-54 | -8.615850e-47 |
| Msa0480940 | Msa1230190 | -0.832894 | 7.284704e-56 | -8.615850e-47 |
| Msa0480940 | Msa1240240 | -0.816456 | 5.480158e-52 | -8.615850e-47 |
| Msa0480940 | Msa1251500 | 0.847136 | 1.399841e-59 | -8.615850e-47 |
| Msa0480940 | Msa1257960 | -0.800326 | 1.518752e-48 | -8.615850e-47 |
| Msa0480940 | Msa1258060 | 0.956718 | 1.522603e-114 | -8.615850e-47 |
| Msa0480940 | Msa1260520 | -0.809387 | 1.939986e-50 | -8.615850e-47 |
| Msa0480940 | Msa1266120 | -0.821522 | 3.860445e-53 | -8.615850e-47 |
| Msa0480940 | Msa1272770 | -0.835058 | 2.093091e-56 | -8.615850e-47 |
| Msa0480940 | Msa1286950 | -0.828828 | 7.234264e-55 | -8.615850e-47 |
| Msa0480940 | Msa1292140 | 0.820348 | 7.192169e-53 | -8.615850e-47 |
| Msa0480940 | Msa1295840 | -0.811581 | 6.516032e-51 | -8.615850e-47 |
| Msa0480940 | Msa1297220 | -0.819959 | 8.828991e-53 | -8.615850e-47 |
| Msa0480940 | Msa1298980 | -0.806126 | 9.568164e-50 | -8.615850e-47 |
| Msa0480940 | Msa1299220 | 0.808770 | 2.630086e-50 | -8.615850e-47 |
| Msa0480940 | Msa1319230 | -0.824270 | 8.841355e-54 | -8.615850e-47 |
| Msa0480940 | Msa1320660 | -0.840635 | 7.723708e-58 | -8.615850e-47 |
| Msa0480940 | Msa1321840 | 0.808097 | 3.661950e-50 | -8.615850e-47 |
| Msa0480940 | Msa1323260 | -0.825046 | 5.801795e-54 | -8.615850e-47 |
| Msa0480940 | Msa1327690 | -0.807191 | 5.702191e-50 | -8.615850e-47 |
| Msa0480940 | Msa1339310 | -0.815910 | 7.255622e-52 | -8.615850e-47 |
| Msa0480940 | Msa1342360 | -0.804742 | 1.867091e-49 | -8.615850e-47 |
| Msa0480940 | Msa1343450 | -0.824284 | 8.771800e-54 | -8.615850e-47 |
| Msa0480940 | Msa1346220 | -0.833711 | 4.557450e-56 | -8.615850e-47 |
| Msa0480940 | Msa1346340 | -0.847465 | 1.137074e-59 | -8.615850e-47 |
| Msa0480940 | Msa1348860 | -0.806563 | 7.742430e-50 | -8.615850e-47 |
| Msa0480940 | Msa1350580 | -0.804189 | 2.434303e-49 | -8.615850e-47 |
| Msa0480940 | Msa1359880 | -0.826275 | 2.966764e-54 | -8.615850e-47 |
| Msa0480940 | Msa1363270 | -0.804659 | 1.942183e-49 | -8.615850e-47 |
| Msa0480940 | Msa1363280 | -0.822710 | 2.047760e-53 | -8.615850e-47 |
| Msa0480940 | Msa1369220 | -0.805982 | 1.026192e-49 | -8.615850e-47 |
| Msa0480940 | Msa1371540 | -0.809876 | 1.523344e-50 | -8.615850e-47 |
| Msa0480940 | Msa1376010 | -0.805764 | 1.140194e-49 | -8.615850e-47 |
| Msa0480940 | Msa1381300 | -0.806364 | 8.528640e-50 | -8.615850e-47 |
| Msa0480940 | Msa1382100 | -0.829504 | 4.962240e-55 | -8.615850e-47 |
| Msa0480940 | Msa1384410 | -0.814657 | 1.377912e-51 | -8.615850e-47 |
| Msa0480940 | Msa1388270 | -0.809707 | 1.656134e-50 | -8.615850e-47 |
| Msa0480940 | Msa1389670 | -0.807461 | 4.999310e-50 | -8.615850e-47 |
| Msa0480940 | Msa1392570 | -0.833909 | 4.067062e-56 | -8.615850e-47 |
| Msa0480940 | Msa1395700 | -0.815723 | 7.989541e-52 | -8.615850e-47 |
| Msa0480940 | Msa1398310 | -0.803767 | 2.979721e-49 | -8.615850e-47 |
| Msa0480940 | Msa1400240 | -0.826260 | 2.990206e-54 | -8.615850e-47 |
| Msa0480940 | Msa1408990 | 0.954665 | 1.773349e-112 | -8.615850e-47 |
| Msa0480940 | Msa1414780 | -0.809667 | 1.689500e-50 | -8.615850e-47 |
| Msa0480940 | Msa1418840 | -0.803440 | 3.482369e-49 | -8.615850e-47 |
| Msa0480940 | Msa1423050 | 0.811783 | 5.890510e-51 | -8.615850e-47 |
| Msa0480940 | Msa1432250 | -0.834951 | 2.227254e-56 | -8.615850e-47 |
| Msa0480940 | Msa1435950 | -0.801603 | 8.330223e-49 | -8.615850e-47 |
| Msa0480940 | Msa1436660 | -0.805805 | 1.118012e-49 | -8.615850e-47 |
| Msa0480940 | Msa1450850 | -0.835727 | 1.418379e-56 | -8.615850e-47 |
| Msa0480940 | Msa1459630 | -0.816056 | 6.732273e-52 | -8.615850e-47 |
| Msa0480940 | Msa1460530 | -0.822375 | 2.449964e-53 | -8.615850e-47 |
| Msa0266140 | Msa0480940 | -0.811503 | 6.775685e-51 | -8.615850e-47 |
| Msa0266380 | Msa0480940 | -0.805022 | 1.631642e-49 | -8.615850e-47 |
| Msa0267450 | Msa0480940 | -0.825888 | 3.667141e-54 | -8.615850e-47 |
| Msa0267510 | Msa0480940 | -0.818726 | 1.686103e-52 | -8.615850e-47 |
| Msa0269660 | Msa0480940 | -0.828690 | 7.814555e-55 | -8.615850e-47 |
| Msa0274940 | Msa0480940 | 0.809826 | 1.561841e-50 | -8.615850e-47 |
| Msa0304060 | Msa0480940 | -0.815147 | 1.072938e-51 | -8.615850e-47 |
| Msa0304350 | Msa0480940 | -0.823881 | 1.090840e-53 | -8.615850e-47 |
| Msa0305910 | Msa0480940 | -0.822947 | 1.803656e-53 | -8.615850e-47 |
| Msa0315660 | Msa0480940 | 0.832786 | 7.750334e-56 | -8.615850e-47 |
| Msa0340830 | Msa0480940 | -0.825060 | 5.757957e-54 | -8.615850e-47 |
| Msa0340870 | Msa0480940 | -0.823488 | 1.347995e-53 | -8.615850e-47 |
| Msa0341860 | Msa0480940 | -0.809782 | 1.596098e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480940 | MtrunA17_Chr4g0056801 | 98.680 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 0.0 | 624 |
| Msa0480940 | MtrunA17_Chr7g0245771 | 68.786 | 173 | 54 | 0 | 112 | 284 | 24 | 196 | 7.77e-93 | 274 |
| Msa0480940 | MtrunA17_Chr8g0364601 | 41.887 | 265 | 150 | 3 | 22 | 285 | 6 | 267 | 4.20e-67 | 211 |
| Msa0480940 | MtrunA17_Chr5g0414141 | 43.651 | 252 | 138 | 3 | 33 | 283 | 17 | 265 | 1.27e-66 | 209 |
| Msa0480940 | MtrunA17_Chr6g0466381 | 43.333 | 240 | 132 | 3 | 22 | 260 | 6 | 242 | 1.10e-62 | 198 |
| Msa0480940 | MtrunA17_Chr6g0465561 | 43.333 | 240 | 132 | 3 | 22 | 260 | 6 | 242 | 1.25e-62 | 198 |
| Msa0480940 | MtrunA17_Chr7g0245781 | 53.982 | 113 | 52 | 0 | 1 | 113 | 1 | 113 | 7.79e-39 | 133 |
| Msa0480940 | MtrunA17_Chr5g0416951 | 31.788 | 151 | 94 | 4 | 129 | 274 | 101 | 247 | 1.11e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480940 | AT4G12110.1 | 76.109 | 293 | 68 | 1 | 1 | 291 | 1 | 293 | 1.08e-175 | 488 |
| Msa0480940 | AT4G22756.1 | 74.247 | 299 | 73 | 2 | 1 | 295 | 1 | 299 | 1.15e-171 | 477 |
| Msa0480940 | AT4G22755.1 | 69.072 | 291 | 87 | 2 | 1 | 290 | 1 | 289 | 2.68e-156 | 438 |
| Msa0480940 | AT1G07420.1 | 42.642 | 265 | 144 | 4 | 19 | 282 | 3 | 260 | 6.54e-69 | 215 |
| Msa0480940 | AT2G29390.3 | 43.033 | 244 | 135 | 3 | 33 | 275 | 10 | 250 | 7.55e-66 | 207 |
| Msa0480940 | AT2G29390.2 | 41.473 | 258 | 147 | 3 | 19 | 275 | 3 | 257 | 9.37e-66 | 207 |
| Msa0480940 | AT1G07420.2 | 46.970 | 198 | 101 | 1 | 85 | 282 | 29 | 222 | 1.44e-64 | 203 |
| Msa0480940 | AT2G29390.5 | 45.550 | 191 | 104 | 0 | 85 | 275 | 26 | 216 | 9.98e-63 | 198 |
| Msa0480940 | AT2G29390.1 | 39.630 | 270 | 147 | 4 | 19 | 275 | 3 | 269 | 2.61e-62 | 199 |
| Msa0480940 | AT2G29390.6 | 47.222 | 180 | 91 | 1 | 102 | 281 | 1 | 176 | 7.46e-61 | 192 |
| Msa0480940 | AT2G29390.4 | 47.222 | 180 | 91 | 1 | 102 | 281 | 1 | 176 | 7.46e-61 | 192 |
| Msa0480940 | AT1G14290.1 | 29.224 | 219 | 142 | 6 | 64 | 274 | 30 | 243 | 7.46e-14 | 70.5 |
| Msa0480940 | AT1G14290.2 | 33.113 | 151 | 92 | 4 | 129 | 274 | 23 | 169 | 1.24e-12 | 65.9 |
Find 107 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGCGGAGATCTTGATTT+TGG | 0.150585 | 3_3:-86643560 | Msa0480940:CDS |
| ACATATTGTGATTACATCTA+TGG | 0.218915 | 3_3:-86641523 | Msa0480940:CDS |
| ATAGATTTCTGCATAATAAA+TGG | 0.221052 | 3_3:-86643654 | Msa0480940:CDS |
| TATATGTCTACAAGAAATTT+TGG | 0.231686 | 3_3:+86641047 | None:intergenic |
| CTTGGACCGGCTATGGTTCC+TGG | 0.248242 | 3_3:-86643523 | Msa0480940:CDS |
| TATTGTAGATGATTGGAATT+AGG | 0.278974 | 3_3:-86643765 | Msa0480940:intron |
| ATTTATTATGCAGAAATCTA+TGG | 0.288607 | 3_3:+86643656 | None:intergenic |
| TATAGCAATTAAGCATTTCA+TGG | 0.305557 | 3_3:+86643930 | None:intergenic |
| CTGGTCACATGATTACATTT+TGG | 0.315803 | 3_3:-86643504 | Msa0480940:CDS |
| AAAATGTTCTTCCTTGTTGT+TGG | 0.321889 | 3_3:-86643896 | Msa0480940:CDS |
| TCCCTGTGGATTGTAAATTC+TGG | 0.327737 | 3_3:-86640847 | Msa0480940:three_prime_UTR |
| TGGAGGATTATACGAATTAC+TGG | 0.338989 | 3_3:-86643681 | Msa0480940:CDS |
| TGCTCAGCGCCACCATAAAA+TGG | 0.348188 | 3_3:+86641604 | None:intergenic |
| TAGATTTCTGCATAATAAAT+GGG | 0.360869 | 3_3:-86643653 | Msa0480940:CDS |
| ACTAGTAAAATAGATGTCTT+TGG | 0.366009 | 3_3:-86641018 | Msa0480940:three_prime_UTR |
| GAAGAGAAAGTAATCGGATT+TGG | 0.370486 | 3_3:+86644078 | None:intergenic |
| TGTGATTGTGATTACCTTGA+TGG | 0.370973 | 3_3:+86643847 | None:intergenic |
| AGATGTCTTTGGTTAGCTTC+AGG | 0.374928 | 3_3:-86641007 | Msa0480940:three_prime_UTR |
| CGCCGGCAATCTCTCTCTCT+AGG | 0.380944 | 3_3:-86644218 | Msa0480940:five_prime_UTR |
| ATGGAGAGATAAACGAACTT+TGG | 0.389544 | 3_3:+86643949 | None:intergenic |
| CCGGCGGCGGGAGAGGGGAG+AGG | 0.399811 | 3_3:+86644235 | None:intergenic |
| TGCGGCGCCTTATGCACATT+GGG | 0.401426 | 3_3:-86643578 | Msa0480940:CDS |
| CGAGGGAGAAGATGAGGAAG+AGG | 0.414192 | 3_3:+86644038 | None:intergenic |
| TGGAGAGATAAACGAACTTT+GGG | 0.417171 | 3_3:+86643950 | None:intergenic |
| GAGATTGCCGGCGGCGGGAG+AGG | 0.427256 | 3_3:+86644228 | None:intergenic |
| TCTCGGCGTCGTGGAGAGAT+TGG | 0.432872 | 3_3:+86644158 | None:intergenic |
| AGGATGAAGACTAGTAGAAC+GGG | 0.441695 | 3_3:-86640987 | Msa0480940:three_prime_UTR |
| CATGAATATCAAGCTCCAAT+TGG | 0.447424 | 3_3:-86643604 | Msa0480940:CDS |
| TGGAAGATCATATAATGAAC+AGG | 0.447595 | 3_3:-86641140 | Msa0480940:CDS |
| GTGAAACAGACTTCCTCCTC+TGG | 0.450453 | 3_3:-86640820 | Msa0480940:three_prime_UTR |
| ATCTCCGCCCAATGTGCATA+AGG | 0.458453 | 3_3:+86643571 | None:intergenic |
| TAAGGCGCCGCAAATCCAAT+TGG | 0.460635 | 3_3:+86643589 | None:intergenic |
| AGATTGCCGGCGGCGGGAGA+GGG | 0.462188 | 3_3:+86644229 | None:intergenic |
| ATGACAGAAGAGAAAGTAAT+CGG | 0.467469 | 3_3:+86644072 | None:intergenic |
| AGAGAGAGATTGCCGGCGGC+GGG | 0.468525 | 3_3:+86644223 | None:intergenic |
| CACGATTACCATCATTATGT+TGG | 0.470556 | 3_3:-86641580 | Msa0480940:CDS |
| TTGCGGCGCCTTATGCACAT+TGG | 0.470678 | 3_3:-86643579 | Msa0480940:CDS |
| AGGTGGTGTATGTTGTATGT+TGG | 0.473393 | 3_3:-86641083 | Msa0480940:three_prime_UTR |
| GTAGTTGAACCATAGGGTTT+CGG | 0.479091 | 3_3:+86644108 | None:intergenic |
| TCAAGCTCCAATTGGATTTG+CGG | 0.480625 | 3_3:-86643596 | Msa0480940:CDS |
| CGTTTCTTATCCTTCCATCA+AGG | 0.481297 | 3_3:-86643861 | Msa0480940:intron |
| CTGAAGGAAGATTCGACAAA+TGG | 0.482061 | 3_3:-86641175 | Msa0480940:CDS |
| TTCCAGAATTTACAATCCAC+AGG | 0.484330 | 3_3:+86640845 | None:intergenic |
| TGGTGGATGATGCGCTGGAC+TGG | 0.495240 | 3_3:+86644290 | None:intergenic |
| GAACCATAGGGTTTCGGCGA+AGG | 0.497179 | 3_3:+86644114 | None:intergenic |
| GAGGAACGAGGGAGAAGATG+AGG | 0.498130 | 3_3:+86644032 | None:intergenic |
| GGGATCATCGTCGCCGGCGC+CGG | 0.499513 | 3_3:+86644184 | None:intergenic |
| TCACCTTCGCCGAAACCCTA+TGG | 0.501858 | 3_3:-86644117 | Msa0480940:CDS |
| TCAGAAGAAGATACTTCAAA+AGG | 0.505907 | 3_3:-86641375 | Msa0480940:intron |
| ACCCTAGAGAGAGAGATTGC+CGG | 0.512601 | 3_3:+86644216 | None:intergenic |
| GAGAGAGAGATTGCCGGCGG+CGG | 0.513252 | 3_3:+86644222 | None:intergenic |
| ATGTCAGGTATGACTTCCCC+TGG | 0.513299 | 3_3:-86641645 | Msa0480940:intron |
| TAGATGATTGGAATTAGGAC+GGG | 0.513499 | 3_3:-86643760 | Msa0480940:CDS |
| CCTCTCCCCTCTCCCGCCGC+CGG | 0.514345 | 3_3:-86644235 | Msa0480940:five_prime_UTR |
| ACAAATGGTGCAGCGCGGAA+TGG | 0.520094 | 3_3:-86641160 | Msa0480940:CDS |
| TAGCGGAGTAGTTGAACCAT+AGG | 0.521461 | 3_3:+86644101 | None:intergenic |
| TAATGTAGAGAGAGTGTGTA+TGG | 0.524622 | 3_3:+86644270 | None:intergenic |
| CGGCGGCGGGAGAGGGGAGA+GGG | 0.531448 | 3_3:+86644236 | None:intergenic |
| GATTGCCGGCGGCGGGAGAG+GGG | 0.531911 | 3_3:+86644230 | None:intergenic |
| AAACTGATGCAAAATTGCTC+TGG | 0.537490 | 3_3:+86641548 | None:intergenic |
| GTAGATGATTGGAATTAGGA+CGG | 0.538786 | 3_3:-86643761 | Msa0480940:intron |
| GATTACCATCATTATGTTGG+AGG | 0.541524 | 3_3:-86641577 | Msa0480940:CDS |
| GCGTCGTGGAGAGATTGGTA+AGG | 0.542904 | 3_3:+86644163 | None:intergenic |
| ATTGCGACCGAGAGAGATCT+CGG | 0.545066 | 3_3:+86644141 | None:intergenic |
| CACGACGCCGAGATCTCTCT+CGG | 0.545396 | 3_3:-86644148 | Msa0480940:CDS |
| ATGTGACCAGGAACCATAGC+CGG | 0.548009 | 3_3:+86643517 | None:intergenic |
| GAGATAAACGAACTTTGGGC+TGG | 0.549681 | 3_3:+86643954 | None:intergenic |
| GCCGGCAATCTCTCTCTCTA+GGG | 0.550744 | 3_3:-86644217 | Msa0480940:five_prime_UTR |
| ACGGGGTTACCGTTACCGTC+TGG | 0.551559 | 3_3:-86643742 | Msa0480940:CDS |
| GGATGATGCGCTGGACTGGA+TGG | 0.552322 | 3_3:+86644294 | None:intergenic |
| GTGTATGGTGGATGATGCGC+TGG | 0.556925 | 3_3:+86644285 | None:intergenic |
| TTTGTCCTCCAACATAATGA+TGG | 0.557552 | 3_3:+86641572 | None:intergenic |
| GTACCCGCTGTGTGTATCAA+TGG | 0.560522 | 3_3:+86643453 | None:intergenic |
| AAAGTAATCGGATTTGGTAG+CGG | 0.569740 | 3_3:+86644084 | None:intergenic |
| TGGATCTTGTACTCATCGAA+AGG | 0.573332 | 3_3:+86643974 | None:intergenic |
| AAACGAGTGGAAGAGGAACG+AGG | 0.585179 | 3_3:+86644020 | None:intergenic |
| GGCGCCTTATGCACATTGGG+CGG | 0.588545 | 3_3:-86643575 | Msa0480940:CDS |
| GATGCGCTGGACTGGATGGA+TGG | 0.590898 | 3_3:+86644298 | None:intergenic |
| AGCGGAGTAGTTGAACCATA+GGG | 0.591782 | 3_3:+86644102 | None:intergenic |
| GGATAAGAAACGAGTTGAAG+AGG | 0.594918 | 3_3:+86643872 | None:intergenic |
| GGATCTTGTACTCATCGAAA+GGG | 0.594949 | 3_3:+86643975 | None:intergenic |
| ATCTCAAATCCAGACGGTAA+CGG | 0.597339 | 3_3:+86643733 | None:intergenic |
| CAGGATGAAGACTAGTAGAA+CGG | 0.597696 | 3_3:-86640988 | Msa0480940:three_prime_UTR |
| TGGTAAGGGATCATCGTCGC+CGG | 0.598287 | 3_3:+86644178 | None:intergenic |
| TGAAACAGACTTCCTCCTCT+GGG | 0.598630 | 3_3:-86640819 | Msa0480940:three_prime_UTR |
| CGAGAGAGATCTCGGCGTCG+TGG | 0.610673 | 3_3:+86644149 | None:intergenic |
| TGTAGAGAGAGTGTGTATGG+TGG | 0.612108 | 3_3:+86644273 | None:intergenic |
| CGTCGTGGAGAGATTGGTAA+GGG | 0.613592 | 3_3:+86644164 | None:intergenic |
| GTGTATCAATGGCTTCAACT+TGG | 0.614849 | 3_3:+86643464 | None:intergenic |
| AGATTTCTGCATAATAAATG+GGG | 0.616388 | 3_3:-86643652 | Msa0480940:CDS |
| TCCAGAATTTACAATCCACA+GGG | 0.621641 | 3_3:+86640846 | None:intergenic |
| CAAAATGTAATCATGTGACC+AGG | 0.621665 | 3_3:+86643505 | None:intergenic |
| AGATGATTGGAATTAGGACG+GGG | 0.631542 | 3_3:-86643759 | Msa0480940:CDS |
| TTTGAATTGCAACCCAGAGG+AGG | 0.632979 | 3_3:+86640807 | None:intergenic |
| AAGCCATTGATACACACAGC+GGG | 0.635131 | 3_3:-86643456 | Msa0480940:intron |
| ATTGTGATTACCTTGATGGA+AGG | 0.636565 | 3_3:+86643851 | None:intergenic |
| ATAGCCGGTCCAAGAAAAGA+CGG | 0.640967 | 3_3:+86643532 | None:intergenic |
| AACGAGTGGAAGAGGAACGA+GGG | 0.641822 | 3_3:+86644021 | None:intergenic |
| GATAATATCTCAAATCCAGA+CGG | 0.645775 | 3_3:+86643727 | None:intergenic |
| GTTGAAGAGGACCAACAACA+AGG | 0.668088 | 3_3:+86643885 | None:intergenic |
| TGTCTGTTAACGCAAACAAG+CGG | 0.675794 | 3_3:+86644323 | None:intergenic |
| CTAGAGAGAGAGATTGCCGG+CGG | 0.699326 | 3_3:+86644219 | None:intergenic |
| TAAGAATGATCATTTCCCTG+TGG | 0.705862 | 3_3:-86640861 | Msa0480940:three_prime_UTR |
| ATTCGACAAATGGTGCAGCG+CGG | 0.713447 | 3_3:-86641165 | Msa0480940:CDS |
| TTACATCTATGGAACAGACA+AGG | 0.732719 | 3_3:-86641512 | Msa0480940:intron |
| GGATGAAGACTAGTAGAACG+GGG | 0.748085 | 3_3:-86640986 | Msa0480940:three_prime_UTR |
| GAAGCCATTGATACACACAG+CGG | 0.790862 | 3_3:-86643457 | Msa0480940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATCAACAAAAAA+AGG | + | chr3_3:86641703-86641722 | None:intergenic | 10.0% |
| !! | ATAATAAGTTAAATATGAAA+TGG | - | chr3_3:86642656-86642675 | Msa0480940:intron | 10.0% |
| !! | ATAATACACAAAAAAATCAA+AGG | + | chr3_3:86641848-86641867 | None:intergenic | 15.0% |
| !!! | ATTTAACTTATTATGAGAAA+AGG | + | chr3_3:86642650-86642669 | None:intergenic | 15.0% |
| !!! | ATAGATTGTCTTATTATATT+TGG | - | chr3_3:86643170-86643189 | Msa0480940:intron | 15.0% |
| !!! | TTTAAAATAGTGATTATATC+TGG | - | chr3_3:86643240-86643259 | Msa0480940:intron | 15.0% |
| !!! | TAAAATGGAATATATTTTGT+GGG | + | chr3_3:86643498-86643517 | None:intergenic | 15.0% |
| !!! | ATAAAATGGAATATATTTTG+TGG | + | chr3_3:86643499-86643518 | None:intergenic | 15.0% |
| !!! | ACAAAATATATTCCATTTTA+TGG | - | chr3_3:86643498-86643517 | Msa0480940:CDS | 15.0% |
| !!! | TCAAAAAGCATAATAAAATT+TGG | - | chr3_3:86644325-86644344 | Msa0480940:five_prime_UTR | 15.0% |
| !!! | TTAAATTACCGTTTTAGTTA+CGG | - | chr3_3:86641306-86641325 | Msa0480940:intron | 20.0% |
| !! | AATTATAACCGTAACTAAAA+CGG | + | chr3_3:86641317-86641336 | None:intergenic | 20.0% |
| !!! | TTTTGTTTATTGTAGATGAT+TGG | - | chr3_3:86641342-86641361 | Msa0480940:intron | 20.0% |
| !!! | GCAATTATTAGTGTATTTTT+TGG | - | chr3_3:86641410-86641429 | Msa0480940:intron | 20.0% |
| !!! | ATTATTAGTGTATTTTTTGG+TGG | - | chr3_3:86641413-86641432 | Msa0480940:intron | 20.0% |
| !! | ATTTATTATGCAGAAATCTA+TGG | + | chr3_3:86641461-86641480 | None:intergenic | 20.0% |
| !! | ATAGATTTCTGCATAATAAA+TGG | - | chr3_3:86641460-86641479 | Msa0480940:intron | 20.0% |
| !! | TAGATTTCTGCATAATAAAT+GGG | - | chr3_3:86641461-86641480 | Msa0480940:intron | 20.0% |
| !! | AAAAAAATCAAAGGAGTAAA+AGG | + | chr3_3:86641839-86641858 | None:intergenic | 20.0% |
| !! | TGTTTCTTAGTAAGATTATT+AGG | - | chr3_3:86641903-86641922 | Msa0480940:intron | 20.0% |
| !! | GTTTCTTAGTAAGATTATTA+GGG | - | chr3_3:86641904-86641923 | Msa0480940:intron | 20.0% |
| !! | GAATATTAGGTAAAAGATAA+AGG | + | chr3_3:86642569-86642588 | None:intergenic | 20.0% |
| !!! | CTTTTACCTAATATTCATTT+CGG | - | chr3_3:86642573-86642592 | Msa0480940:intron | 20.0% |
| !! | AAACAAAAAAAATGCTAACT+TGG | - | chr3_3:86642679-86642698 | Msa0480940:intron | 20.0% |
| !! | CATTTAAAGACAATTTAAAC+GGG | + | chr3_3:86642715-86642734 | None:intergenic | 20.0% |
| !! | CCATTTAAAGACAATTTAAA+CGG | + | chr3_3:86642716-86642735 | None:intergenic | 20.0% |
| !! | AAGACACAATAATCTAAATA+CGG | + | chr3_3:86642746-86642765 | None:intergenic | 20.0% |
| !! | GTTGAAGAAAAAAAATTTGA+AGG | - | chr3_3:86642780-86642799 | Msa0480940:intron | 20.0% |
| !! | AAAAATTTGAAGGACAATTT+AGG | - | chr3_3:86642790-86642809 | Msa0480940:intron | 20.0% |
| !! | AAAATTTGAAGGACAATTTA+GGG | - | chr3_3:86642791-86642810 | Msa0480940:intron | 20.0% |
| !!! | CTTTTTCCTAATAATCATTT+TGG | + | chr3_3:86642948-86642967 | None:intergenic | 20.0% |
| !! | GATTATTAGGAAAAAGATAA+AGG | - | chr3_3:86642952-86642971 | Msa0480940:intron | 20.0% |
| !! | ATATAGTTGAATGTCAAAAA+TGG | - | chr3_3:86643028-86643047 | Msa0480940:intron | 20.0% |
| !! | CAATTGAATGTAAAAATTGT+AGG | - | chr3_3:86643114-86643133 | Msa0480940:intron | 20.0% |
| !! | TATCTATCTAATGAAAAAGA+GGG | + | chr3_3:86643372-86643391 | None:intergenic | 20.0% |
| !! | ATATCTATCTAATGAAAAAG+AGG | + | chr3_3:86643373-86643392 | None:intergenic | 20.0% |
| !!! | AAATATATTCCATTTTATGG+TGG | - | chr3_3:86643501-86643520 | Msa0480940:CDS | 20.0% |
| !! | ACTAAACAAAATGAAAAATG+TGG | + | chr3_3:86643856-86643875 | None:intergenic | 20.0% |
| !!! | TATATGTCTACAAGAAATTT+TGG | + | chr3_3:86644070-86644089 | None:intergenic | 20.0% |
| ! | TATAGCAATTAAGCATTTCA+TGG | + | chr3_3:86641187-86641206 | None:intergenic | 25.0% |
| ! | TATTGTAGATGATTGGAATT+AGG | - | chr3_3:86641349-86641368 | Msa0480940:intron | 25.0% |
| ! | AGATTTCTGCATAATAAATG+GGG | - | chr3_3:86641462-86641481 | Msa0480940:intron | 25.0% |
| ! | ATTACTTTATGCTGAAAGTT+CGG | - | chr3_3:86642158-86642177 | Msa0480940:intron | 25.0% |
| !!! | ACATTAAGTGTTCTAAAAAG+AGG | + | chr3_3:86642259-86642278 | None:intergenic | 25.0% |
| ! | AGTCCAATTAAAAATATTCC+TGG | - | chr3_3:86642309-86642328 | Msa0480940:intron | 25.0% |
| !!! | TGTCCAGGAATATTTTTAAT+TGG | + | chr3_3:86642315-86642334 | None:intergenic | 25.0% |
| !! | TAGAAACTTTTTACAAGCTT+TGG | - | chr3_3:86642423-86642442 | Msa0480940:intron | 25.0% |
| ! | TTAAGACCGAAATGAATATT+AGG | + | chr3_3:86642582-86642601 | None:intergenic | 25.0% |
| ! | CCGTTTAAATTGTCTTTAAA+TGG | - | chr3_3:86642713-86642732 | Msa0480940:intron | 25.0% |
| !!! | AAAAAATGTTGACTTAGCAA+TGG | + | chr3_3:86642868-86642887 | None:intergenic | 25.0% |
| ! | AAAGGACCAAAATGATTATT+AGG | - | chr3_3:86642939-86642958 | Msa0480940:intron | 25.0% |
| ! | AAAATAGTGATTATATCTGG+TGG | - | chr3_3:86643243-86643262 | Msa0480940:intron | 25.0% |
| ! | TGTCTGTAGGATTTAATATT+CGG | - | chr3_3:86643314-86643333 | Msa0480940:intron | 25.0% |
| ! | ATCTATCTAATGAAAAAGAG+GGG | + | chr3_3:86643371-86643390 | None:intergenic | 25.0% |
| ! | AGCAATCAAACATAAAAGTT+GGG | + | chr3_3:86643438-86643457 | None:intergenic | 25.0% |
| ! | AAGCAATCAAACATAAAAGT+TGG | + | chr3_3:86643439-86643458 | None:intergenic | 25.0% |
| ! | ACATATTGTGATTACATCTA+TGG | - | chr3_3:86643591-86643610 | Msa0480940:CDS | 25.0% |
| ! | AACAAAATGAAAAATGTGGA+AGG | + | chr3_3:86643852-86643871 | None:intergenic | 25.0% |
| ! | ACTAGTAAAATAGATGTCTT+TGG | - | chr3_3:86644096-86644115 | Msa0480940:CDS | 25.0% |
| !!! | TGATTTTGTTTTACAAGAGT+GGG | - | chr3_3:86644163-86644182 | Msa0480940:CDS | 25.0% |
| !! | ATTTTTCTGTTGTCATGTTT+TGG | - | chr3_3:86644197-86644216 | Msa0480940:five_prime_UTR | 25.0% |
| ATGACAGAAGAGAAAGTAAT+CGG | + | chr3_3:86641045-86641064 | None:intergenic | 30.0% | |
| TTGATTTCAAGAAAAACGAG+TGG | + | chr3_3:86641110-86641129 | None:intergenic | 30.0% | |
| ! | AAAATGTTCTTCCTTGTTGT+TGG | - | chr3_3:86641218-86641237 | Msa0480940:intron | 30.0% |
| GATAATATCTCAAATCCAGA+CGG | + | chr3_3:86641390-86641409 | None:intergenic | 30.0% | |
| !!! | ATTAGTGTATTTTTTGGTGG+AGG | - | chr3_3:86641416-86641435 | Msa0480940:intron | 30.0% |
| !!! | ACATGATTACATTTTGGTTG+TGG | - | chr3_3:86641616-86641635 | Msa0480940:CDS | 30.0% |
| AAAAGGAAAATGACAGAAAG+TGG | + | chr3_3:86641686-86641705 | None:intergenic | 30.0% | |
| TTCCAAAAGGACATTCATTA+CGG | + | chr3_3:86641734-86641753 | None:intergenic | 30.0% | |
| TTACGTCCAATTGTTTGAAT+GGG | + | chr3_3:86642134-86642153 | None:intergenic | 30.0% | |
| ATTACGTCCAATTGTTTGAA+TGG | + | chr3_3:86642135-86642154 | None:intergenic | 30.0% | |
| TCATAAACAGGTTTCTTCTA+AGG | + | chr3_3:86642186-86642205 | None:intergenic | 30.0% | |
| AAGAAACCTGTTTATGATCT+TGG | - | chr3_3:86642189-86642208 | Msa0480940:intron | 30.0% | |
| AGAAACCTGTTTATGATCTT+GGG | - | chr3_3:86642190-86642209 | Msa0480940:intron | 30.0% | |
| ! | TGGAAACAGAATTTTGTTGA+AGG | - | chr3_3:86642230-86642249 | Msa0480940:intron | 30.0% |
| ACTACAGCATAAACTTTCAA+AGG | + | chr3_3:86642340-86642359 | None:intergenic | 30.0% | |
| TATGTGAATATGAAGTGAGA+TGG | + | chr3_3:86642500-86642519 | None:intergenic | 30.0% | |
| ! | GATCGATTTCGAAAAGATAA+AGG | + | chr3_3:86642618-86642637 | None:intergenic | 30.0% |
| TACTCACTTGGAAAAGATAA+AGG | - | chr3_3:86642921-86642940 | Msa0480940:intron | 30.0% | |
| TAGAAGCGAATTAAAGGAAT+TGG | + | chr3_3:86643062-86643081 | None:intergenic | 30.0% | |
| TAACTGTAGAAGCGAATTAA+AGG | + | chr3_3:86643068-86643087 | None:intergenic | 30.0% | |
| TTAAATCCTACAGACAAGAT+TGG | + | chr3_3:86643310-86643329 | None:intergenic | 30.0% | |
| ATCATGCTGATGTTTATCAA+TGG | + | chr3_3:86643343-86643362 | None:intergenic | 30.0% | |
| TCTATCTAATGAAAAAGAGG+GGG | + | chr3_3:86643370-86643389 | None:intergenic | 30.0% | |
| TGCTTTACTTATCATATGTC+AGG | - | chr3_3:86643454-86643473 | Msa0480940:intron | 30.0% | |
| ! | ATATATTTTGTGGGATTCCA+GGG | + | chr3_3:86643489-86643508 | None:intergenic | 30.0% |
| ! | AATATATTTTGTGGGATTCC+AGG | + | chr3_3:86643490-86643509 | None:intergenic | 30.0% |
| TTGCAAATCAATTTCACATG+TGG | + | chr3_3:86643683-86643702 | None:intergenic | 30.0% | |
| !!! | TTTTGCTTTGTTTATGTCAC+AGG | - | chr3_3:86643706-86643725 | Msa0480940:CDS | 30.0% |
| !! | TTTGCTTTGTTTATGTCACA+GGG | - | chr3_3:86643707-86643726 | Msa0480940:CDS | 30.0% |
| TCAGAAGAAGATACTTCAAA+AGG | - | chr3_3:86643739-86643758 | Msa0480940:CDS | 30.0% | |
| CAGCTAAATCAATTCACAAA+AGG | + | chr3_3:86643922-86643941 | None:intergenic | 30.0% | |
| ! | TTGTGAATTGATTTAGCTGA+AGG | - | chr3_3:86643923-86643942 | Msa0480940:CDS | 30.0% |
| TGGAAGATCATATAATGAAC+AGG | - | chr3_3:86643974-86643993 | Msa0480940:CDS | 30.0% | |
| !!! | GTGATTTTGTTTTACAAGAG+TGG | - | chr3_3:86644162-86644181 | Msa0480940:CDS | 30.0% |
| !!! | TGTTTTGGAATTCGAACATT+CGG | - | chr3_3:86644212-86644231 | Msa0480940:five_prime_UTR | 30.0% |
| ! | TAATGTAGAGAGAGTGTGTA+TGG | + | chr3_3:86640847-86640866 | None:intergenic | 35.0% |
| ! | AAAGTAATCGGATTTGGTAG+CGG | + | chr3_3:86641033-86641052 | None:intergenic | 35.0% |
| GAAGAGAAAGTAATCGGATT+TGG | + | chr3_3:86641039-86641058 | None:intergenic | 35.0% | |
| TGGAGAGATAAACGAACTTT+GGG | + | chr3_3:86641167-86641186 | None:intergenic | 35.0% | |
| ATGGAGAGATAAACGAACTT+TGG | + | chr3_3:86641168-86641187 | None:intergenic | 35.0% | |
| ATTGTGATTACCTTGATGGA+AGG | + | chr3_3:86641266-86641285 | None:intergenic | 35.0% | |
| TGTGATTGTGATTACCTTGA+TGG | + | chr3_3:86641270-86641289 | None:intergenic | 35.0% | |
| GTAGATGATTGGAATTAGGA+CGG | - | chr3_3:86641353-86641372 | Msa0480940:intron | 35.0% | |
| TAGATGATTGGAATTAGGAC+GGG | - | chr3_3:86641354-86641373 | Msa0480940:intron | 35.0% | |
| TGGAGGATTATACGAATTAC+TGG | - | chr3_3:86641433-86641452 | Msa0480940:intron | 35.0% | |
| CATGAATATCAAGCTCCAAT+TGG | - | chr3_3:86641510-86641529 | Msa0480940:intron | 35.0% | |
| CAAAATGTAATCATGTGACC+AGG | + | chr3_3:86641612-86641631 | None:intergenic | 35.0% | |
| ! | CTGGTCACATGATTACATTT+TGG | - | chr3_3:86641610-86641629 | Msa0480940:CDS | 35.0% |
| AAAGGACATTCATTACGGTT+TGG | + | chr3_3:86641729-86641748 | None:intergenic | 35.0% | |
| ! | AACCGTAATGAATGTCCTTT+TGG | - | chr3_3:86641729-86641748 | Msa0480940:intron | 35.0% |
| ATCTCAAGGATCTGTAATAG+TGG | - | chr3_3:86641764-86641783 | Msa0480940:intron | 35.0% | |
| TCTCAAGGATCTGTAATAGT+GGG | - | chr3_3:86641765-86641784 | Msa0480940:intron | 35.0% | |
| !!! | TGGGTTGCTTTTTGCTTTTA+TGG | - | chr3_3:86641784-86641803 | Msa0480940:intron | 35.0% |
| !!! | GGGTTGCTTTTTGCTTTTAT+GGG | - | chr3_3:86641785-86641804 | Msa0480940:intron | 35.0% |
| !!! | GGTTGCTTTTTGCTTTTATG+GGG | - | chr3_3:86641786-86641805 | Msa0480940:intron | 35.0% |
| ACAAGCAAAGGTTGTTAAAG+TGG | + | chr3_3:86641983-86642002 | None:intergenic | 35.0% | |
| TAACAACCTTTGCTTGTATG+AGG | - | chr3_3:86641986-86642005 | Msa0480940:intron | 35.0% | |
| ! | GATGCTTCAATTTTCTGACA+CGG | - | chr3_3:86642013-86642032 | Msa0480940:intron | 35.0% |
| TGCATTTGGCTGTAAATTGA+TGG | + | chr3_3:86642094-86642113 | None:intergenic | 35.0% | |
| GCCAAATGCAGAATTATTGT+CGG | - | chr3_3:86642104-86642123 | Msa0480940:intron | 35.0% | |
| ACCGACAATAATTCTGCATT+TGG | + | chr3_3:86642108-86642127 | None:intergenic | 35.0% | |
| GAAACCTGTTTATGATCTTG+GGG | - | chr3_3:86642191-86642210 | Msa0480940:intron | 35.0% | |
| AAACCTGTTTATGATCTTGG+GGG | - | chr3_3:86642192-86642211 | Msa0480940:intron | 35.0% | |
| AAACTTTCAAAGGTTTGTCC+AGG | + | chr3_3:86642330-86642349 | None:intergenic | 35.0% | |
| TACACACACACTTACACATA+TGG | - | chr3_3:86642526-86642545 | Msa0480940:intron | 35.0% | |
| ! | GAAGGACAATTTAGGGATTT+TGG | - | chr3_3:86642798-86642817 | Msa0480940:intron | 35.0% |
| TTAGCAATGGTTGTATAAGG+TGG | + | chr3_3:86642855-86642874 | None:intergenic | 35.0% | |
| GACTTAGCAATGGTTGTATA+AGG | + | chr3_3:86642858-86642877 | None:intergenic | 35.0% | |
| AGTTCATATGCTGTGAGAAA+AGG | - | chr3_3:86642889-86642908 | Msa0480940:intron | 35.0% | |
| AGGACAAAAGTTTACTCACT+TGG | - | chr3_3:86642909-86642928 | Msa0480940:intron | 35.0% | |
| !! | TCAAATTCAAGTTGCAAGCA+CGG | + | chr3_3:86643279-86643298 | None:intergenic | 35.0% |
| TAATTGCCAATCTTGTCTGT+AGG | - | chr3_3:86643301-86643320 | Msa0480940:intron | 35.0% | |
| CCAAATTTCAATGCAGAAAC+TGG | + | chr3_3:86643413-86643432 | None:intergenic | 35.0% | |
| CCAGTTTCTGCATTGAAATT+TGG | - | chr3_3:86643410-86643429 | Msa0480940:intron | 35.0% | |
| ! | TATATTTTGTGGGATTCCAG+GGG | + | chr3_3:86643488-86643507 | None:intergenic | 35.0% |
| CACGATTACCATCATTATGT+TGG | - | chr3_3:86643534-86643553 | Msa0480940:CDS | 35.0% | |
| GATTACCATCATTATGTTGG+AGG | - | chr3_3:86643537-86643556 | Msa0480940:CDS | 35.0% | |
| TTTGTCCTCCAACATAATGA+TGG | + | chr3_3:86643545-86643564 | None:intergenic | 35.0% | |
| AAACTGATGCAAAATTGCTC+TGG | + | chr3_3:86643569-86643588 | None:intergenic | 35.0% | |
| TTACATCTATGGAACAGACA+AGG | - | chr3_3:86643602-86643621 | Msa0480940:CDS | 35.0% | |
| ! | TGTTTATGTCACAGGGTTTT+CGG | - | chr3_3:86643714-86643733 | Msa0480940:CDS | 35.0% |
| AAGCTAATTAAAGCCACAAC+AGG | + | chr3_3:86643803-86643822 | None:intergenic | 35.0% | |
| TCACAAAAGGACAATGAAGT+GGG | + | chr3_3:86643909-86643928 | None:intergenic | 35.0% | |
| TTCACAAAAGGACAATGAAG+TGG | + | chr3_3:86643910-86643929 | None:intergenic | 35.0% | |
| !!! | GAATGAGACAGAAGCATTTT+AGG | - | chr3_3:86644011-86644030 | Msa0480940:CDS | 35.0% |
| !!! | TTTGTTTTACAAGAGTGGGT+TGG | - | chr3_3:86644167-86644186 | Msa0480940:CDS | 35.0% |
| !! | TTGTTTTACAAGAGTGGGTT+GGG | - | chr3_3:86644168-86644187 | Msa0480940:CDS | 35.0% |
| TAAGAATGATCATTTCCCTG+TGG | - | chr3_3:86644253-86644272 | Msa0480940:five_prime_UTR | 35.0% | |
| TCCAGAATTTACAATCCACA+GGG | + | chr3_3:86644271-86644290 | None:intergenic | 35.0% | |
| TTCCAGAATTTACAATCCAC+AGG | + | chr3_3:86644272-86644291 | None:intergenic | 35.0% | |
| TGTCTGTTAACGCAAACAAG+CGG | + | chr3_3:86640794-86640813 | None:intergenic | 40.0% | |
| !!! | TCTCTAGGGTTTCTTTTCTC+CGG | - | chr3_3:86640911-86640930 | Msa0480940:three_prime_UTR | 40.0% |
| GTAGTTGAACCATAGGGTTT+CGG | + | chr3_3:86641009-86641028 | None:intergenic | 40.0% | |
| TCAAGAAAAACGAGTGGAAG+AGG | + | chr3_3:86641104-86641123 | None:intergenic | 40.0% | |
| GGATCTTGTACTCATCGAAA+GGG | + | chr3_3:86641142-86641161 | None:intergenic | 40.0% | |
| TGGATCTTGTACTCATCGAA+AGG | + | chr3_3:86641143-86641162 | None:intergenic | 40.0% | |
| ! | GGATAAGAAACGAGTTGAAG+AGG | + | chr3_3:86641245-86641264 | None:intergenic | 40.0% |
| CGTTTCTTATCCTTCCATCA+AGG | - | chr3_3:86641253-86641272 | Msa0480940:intron | 40.0% | |
| AGATGATTGGAATTAGGACG+GGG | - | chr3_3:86641355-86641374 | Msa0480940:intron | 40.0% | |
| ATCTCAAATCCAGACGGTAA+CGG | + | chr3_3:86641384-86641403 | None:intergenic | 40.0% | |
| TCAAGCTCCAATTGGATTTG+CGG | - | chr3_3:86641518-86641537 | Msa0480940:CDS | 40.0% | |
| GTGTATCAATGGCTTCAACT+TGG | + | chr3_3:86641653-86641672 | None:intergenic | 40.0% | |
| !!! | TGTCCTTTTGGAAAGTGCTT+TGG | - | chr3_3:86641741-86641760 | Msa0480940:intron | 40.0% |
| ! | GATCCAAAGCACTTTCCAAA+AGG | + | chr3_3:86641747-86641766 | None:intergenic | 40.0% |
| TGCAACTATAGATCTCACTC+AGG | + | chr3_3:86641812-86641831 | None:intergenic | 40.0% | |
| AGCTGATACAGTTGCAATTG+CGG | - | chr3_3:86641938-86641957 | Msa0480940:intron | 40.0% | |
| ATACAGTTGCAATTGCGGTT+GGG | - | chr3_3:86641943-86641962 | Msa0480940:intron | 40.0% | |
| TCACAACCTCATACAAGCAA+AGG | + | chr3_3:86641995-86642014 | None:intergenic | 40.0% | |
| GGTTCACCCATTCAAACAAT+TGG | - | chr3_3:86642125-86642144 | Msa0480940:intron | 40.0% | |
| AACCTGTTTATGATCTTGGG+GGG | - | chr3_3:86642193-86642212 | Msa0480940:intron | 40.0% | |
| CACCAAGACGTAAATCTTTC+CGG | - | chr3_3:86642380-86642399 | Msa0480940:intron | 40.0% | |
| ! | TAGGGATTTTGGATGACAGT+TGG | - | chr3_3:86642809-86642828 | Msa0480940:intron | 40.0% |
| ! | AGGGATTTTGGATGACAGTT+GGG | - | chr3_3:86642810-86642829 | Msa0480940:intron | 40.0% |
| !! | GTTAGTGATTAGTCTTGCTG+AGG | - | chr3_3:86643192-86643211 | Msa0480940:intron | 40.0% |
| CAATCCACCAGATATAAGCA+CGG | + | chr3_3:86643218-86643237 | None:intergenic | 40.0% | |
| TTATATCTGGTGGAATGTCC+AGG | - | chr3_3:86643253-86643272 | Msa0480940:intron | 40.0% | |
| ATGCAGAAACTGGAGAAGAA+TGG | + | chr3_3:86643403-86643422 | None:intergenic | 40.0% | |
| !! | TGGAAGGTGTTTGAGCAAAA+TGG | + | chr3_3:86643836-86643855 | None:intergenic | 40.0% |
| CACAAAAGGACAATGAAGTG+GGG | + | chr3_3:86643908-86643927 | None:intergenic | 40.0% | |
| CTGAAGGAAGATTCGACAAA+TGG | - | chr3_3:86643939-86643958 | Msa0480940:CDS | 40.0% | |
| !!! | TGAGACAGAAGCATTTTAGG+TGG | - | chr3_3:86644014-86644033 | Msa0480940:CDS | 40.0% |
| AGGTGGTGTATGTTGTATGT+TGG | - | chr3_3:86644031-86644050 | Msa0480940:CDS | 40.0% | |
| !! | AGATGTCTTTGGTTAGCTTC+AGG | - | chr3_3:86644107-86644126 | Msa0480940:CDS | 40.0% |
| CAGGATGAAGACTAGTAGAA+CGG | - | chr3_3:86644126-86644145 | Msa0480940:CDS | 40.0% | |
| AGGATGAAGACTAGTAGAAC+GGG | - | chr3_3:86644127-86644146 | Msa0480940:CDS | 40.0% | |
| !!! | TGTTTTACAAGAGTGGGTTG+GGG | - | chr3_3:86644169-86644188 | Msa0480940:CDS | 40.0% |
| ! | TCCCTGTGGATTGTAAATTC+TGG | - | chr3_3:86644267-86644286 | Msa0480940:five_prime_UTR | 40.0% |
| ! | CTTTTTGAATTGCAACCCAG+AGG | + | chr3_3:86644313-86644332 | None:intergenic | 40.0% |
| ! | TGTAGAGAGAGTGTGTATGG+TGG | + | chr3_3:86640844-86640863 | None:intergenic | 45.0% |
| AGCGGAGTAGTTGAACCATA+GGG | + | chr3_3:86641015-86641034 | None:intergenic | 45.0% | |
| TAGCGGAGTAGTTGAACCAT+AGG | + | chr3_3:86641016-86641035 | None:intergenic | 45.0% | |
| GAGATAAACGAACTTTGGGC+TGG | + | chr3_3:86641163-86641182 | None:intergenic | 45.0% | |
| GTTGAAGAGGACCAACAACA+AGG | + | chr3_3:86641232-86641251 | None:intergenic | 45.0% | |
| ! | TTGGGCGGAGATCTTGATTT+TGG | - | chr3_3:86641554-86641573 | Msa0480940:CDS | 45.0% |
| ! | TGGGCGGAGATCTTGATTTT+GGG | - | chr3_3:86641555-86641574 | Msa0480940:CDS | 45.0% |
| ! | TTGGGGATTCCGTCTTTTCT+TGG | - | chr3_3:86641573-86641592 | Msa0480940:CDS | 45.0% |
| ! | GATTCCGTCTTTTCTTGGAC+CGG | - | chr3_3:86641578-86641597 | Msa0480940:CDS | 45.0% |
| ATAGCCGGTCCAAGAAAAGA+CGG | + | chr3_3:86641585-86641604 | None:intergenic | 45.0% | |
| GAAGCCATTGATACACACAG+CGG | - | chr3_3:86641657-86641676 | Msa0480940:intron | 45.0% | |
| AAGCCATTGATACACACAGC+GGG | - | chr3_3:86641658-86641677 | Msa0480940:intron | 45.0% | |
| !! | GGAAAGTGCTTTGGATCTCA+AGG | - | chr3_3:86641750-86641769 | Msa0480940:intron | 45.0% |
| GATACAGTTGCAATTGCGGT+TGG | - | chr3_3:86641942-86641961 | Msa0480940:intron | 45.0% | |
| ACCTGTTTATGATCTTGGGG+GGG | - | chr3_3:86642194-86642213 | Msa0480940:intron | 45.0% | |
| TGCCGGAAAGATTTACGTCT+TGG | + | chr3_3:86642385-86642404 | None:intergenic | 45.0% | |
| ! | TTCCGGCATTTTCTGTCTCA+AGG | - | chr3_3:86642397-86642416 | Msa0480940:intron | 45.0% |
| ! | TCCGGCATTTTCTGTCTCAA+GGG | - | chr3_3:86642398-86642417 | Msa0480940:intron | 45.0% |
| ACCCTTGAGACAGAAAATGC+CGG | + | chr3_3:86642402-86642421 | None:intergenic | 45.0% | |
| TTTGGATGACAGTTGGGAGT+TGG | - | chr3_3:86642816-86642835 | Msa0480940:intron | 45.0% | |
| TTGGATGACAGTTGGGAGTT+GGG | - | chr3_3:86642817-86642836 | Msa0480940:intron | 45.0% | |
| AAGCCACAACAGGCAAATCA+CGG | + | chr3_3:86643793-86643812 | None:intergenic | 45.0% | |
| GGATGAAGACTAGTAGAACG+GGG | - | chr3_3:86644128-86644147 | Msa0480940:CDS | 45.0% | |
| TGAAACAGACTTCCTCCTCT+GGG | - | chr3_3:86644295-86644314 | Msa0480940:five_prime_UTR | 45.0% | |
| TTTGAATTGCAACCCAGAGG+AGG | + | chr3_3:86644310-86644329 | None:intergenic | 45.0% | |
| ACCCTAGAGAGAGAGATTGC+CGG | + | chr3_3:86640901-86640920 | None:intergenic | 50.0% | |
| CGTCGTGGAGAGATTGGTAA+GGG | + | chr3_3:86640953-86640972 | None:intergenic | 50.0% | |
| ATTGCGACCGAGAGAGATCT+CGG | + | chr3_3:86640976-86640995 | None:intergenic | 50.0% | |
| AACGAGTGGAAGAGGAACGA+GGG | + | chr3_3:86641096-86641115 | None:intergenic | 50.0% | |
| AAACGAGTGGAAGAGGAACG+AGG | + | chr3_3:86641097-86641116 | None:intergenic | 50.0% | |
| !! | TAAGGCGCCGCAAATCCAAT+TGG | + | chr3_3:86641528-86641547 | None:intergenic | 50.0% |
| ATCTCCGCCCAATGTGCATA+AGG | + | chr3_3:86641546-86641565 | None:intergenic | 50.0% | |
| ! | GGGCGGAGATCTTGATTTTG+GGG | - | chr3_3:86641556-86641575 | Msa0480940:CDS | 50.0% |
| ! | GTCTTTTCTTGGACCGGCTA+TGG | - | chr3_3:86641584-86641603 | Msa0480940:CDS | 50.0% |
| ATGTGACCAGGAACCATAGC+CGG | + | chr3_3:86641600-86641619 | None:intergenic | 50.0% | |
| GTACCCGCTGTGTGTATCAA+TGG | + | chr3_3:86641664-86641683 | None:intergenic | 50.0% | |
| ACCCCCCCAAGATCATAAAC+AGG | + | chr3_3:86642198-86642217 | None:intergenic | 50.0% | |
| TGTTTATGATCTTGGGGGGG+TGG | - | chr3_3:86642197-86642216 | Msa0480940:intron | 50.0% | |
| GTTTATGATCTTGGGGGGGT+GGG | - | chr3_3:86642198-86642217 | Msa0480940:intron | 50.0% | |
| TTTATGATCTTGGGGGGGTG+GGG | - | chr3_3:86642199-86642218 | Msa0480940:intron | 50.0% | |
| ATGTCAGGTATGACTTCCCC+TGG | - | chr3_3:86643469-86643488 | Msa0480940:CDS | 50.0% | |
| TGCTCAGCGCCACCATAAAA+TGG | + | chr3_3:86643513-86643532 | None:intergenic | 50.0% | |
| ! | GAACCGTGATTTGCCTGTTG+TGG | - | chr3_3:86643787-86643806 | Msa0480940:intron | 50.0% |
| ATTCGACAAATGGTGCAGCG+CGG | - | chr3_3:86643949-86643968 | Msa0480940:CDS | 50.0% | |
| GTGAAACAGACTTCCTCCTC+TGG | - | chr3_3:86644294-86644313 | Msa0480940:five_prime_UTR | 50.0% | |
| !! | GTGTATGGTGGATGATGCGC+TGG | + | chr3_3:86640832-86640851 | None:intergenic | 55.0% |
| CTAGAGAGAGAGATTGCCGG+CGG | + | chr3_3:86640898-86640917 | None:intergenic | 55.0% | |
| GCCGGCAATCTCTCTCTCTA+GGG | - | chr3_3:86640897-86640916 | Msa0480940:three_prime_UTR | 55.0% | |
| TGGTAAGGGATCATCGTCGC+CGG | + | chr3_3:86640939-86640958 | None:intergenic | 55.0% | |
| GCGTCGTGGAGAGATTGGTA+AGG | + | chr3_3:86640954-86640973 | None:intergenic | 55.0% | |
| TCACCTTCGCCGAAACCCTA+TGG | - | chr3_3:86640997-86641016 | Msa0480940:three_prime_UTR | 55.0% | |
| GAACCATAGGGTTTCGGCGA+AGG | + | chr3_3:86641003-86641022 | None:intergenic | 55.0% | |
| CGAGGGAGAAGATGAGGAAG+AGG | + | chr3_3:86641079-86641098 | None:intergenic | 55.0% | |
| GAGGAACGAGGGAGAAGATG+AGG | + | chr3_3:86641085-86641104 | None:intergenic | 55.0% | |
| TTGCGGCGCCTTATGCACAT+TGG | - | chr3_3:86641535-86641554 | Msa0480940:CDS | 55.0% | |
| TGCGGCGCCTTATGCACATT+GGG | - | chr3_3:86641536-86641555 | Msa0480940:CDS | 55.0% | |
| TTATGATCTTGGGGGGGTGG+GGG | - | chr3_3:86642200-86642219 | Msa0480940:intron | 55.0% | |
| GCTGAGGCCGTGCTTATATC+TGG | - | chr3_3:86643208-86643227 | Msa0480940:intron | 55.0% | |
| GAGGCCGTGCTTATATCTGG+TGG | - | chr3_3:86643211-86643230 | Msa0480940:intron | 55.0% | |
| !! | TTCAAGTTGCAAGCACGGCC+TGG | + | chr3_3:86643274-86643293 | None:intergenic | 55.0% |
| ACAAATGGTGCAGCGCGGAA+TGG | - | chr3_3:86643954-86643973 | Msa0480940:CDS | 55.0% | |
| ! | GATGCGCTGGACTGGATGGA+TGG | + | chr3_3:86640819-86640838 | None:intergenic | 60.0% |
| ! | GGATGATGCGCTGGACTGGA+TGG | + | chr3_3:86640823-86640842 | None:intergenic | 60.0% |
| ! | TGGTGGATGATGCGCTGGAC+TGG | + | chr3_3:86640827-86640846 | None:intergenic | 60.0% |
| CGCCGGCAATCTCTCTCTCT+AGG | - | chr3_3:86640896-86640915 | Msa0480940:three_prime_UTR | 60.0% | |
| ! | GGGTTTCTTTTCTCCGGCGC+CGG | - | chr3_3:86640917-86640936 | Msa0480940:three_prime_UTR | 60.0% |
| TCTCGGCGTCGTGGAGAGAT+TGG | + | chr3_3:86640959-86640978 | None:intergenic | 60.0% | |
| CACGACGCCGAGATCTCTCT+CGG | - | chr3_3:86640966-86640985 | Msa0480940:three_prime_UTR | 60.0% | |
| ACGGGGTTACCGTTACCGTC+TGG | - | chr3_3:86641372-86641391 | Msa0480940:intron | 60.0% | |
| GGCGCCTTATGCACATTGGG+CGG | - | chr3_3:86641539-86641558 | Msa0480940:CDS | 60.0% | |
| CTTGGACCGGCTATGGTTCC+TGG | - | chr3_3:86641591-86641610 | Msa0480940:CDS | 60.0% | |
| TATGATCTTGGGGGGGTGGG+GGG | - | chr3_3:86642201-86642220 | Msa0480940:intron | 60.0% | |
| AGAGAGAGATTGCCGGCGGC+GGG | + | chr3_3:86640894-86640913 | None:intergenic | 65.0% | |
| GAGAGAGAGATTGCCGGCGG+CGG | + | chr3_3:86640895-86640914 | None:intergenic | 65.0% | |
| CGAGAGAGATCTCGGCGTCG+TGG | + | chr3_3:86640968-86640987 | None:intergenic | 65.0% | |
| AGATTGCCGGCGGCGGGAGA+GGG | + | chr3_3:86640888-86640907 | None:intergenic | 70.0% | |
| GATTGCCGGCGGCGGGAGAG+GGG | + | chr3_3:86640887-86640906 | None:intergenic | 75.0% | |
| GAGATTGCCGGCGGCGGGAG+AGG | + | chr3_3:86640889-86640908 | None:intergenic | 75.0% | |
| GGGATCATCGTCGCCGGCGC+CGG | + | chr3_3:86640933-86640952 | None:intergenic | 75.0% | |
| ! | CGGCGGCGGGAGAGGGGAGA+GGG | + | chr3_3:86640881-86640900 | None:intergenic | 80.0% |
| ! | CCTCTCCCCTCTCCCGCCGC+CGG | - | chr3_3:86640879-86640898 | Msa0480940:three_prime_UTR | 80.0% |
| ! | GGGGGGGTGGGGGGCTCTGT+TGG | - | chr3_3:86642210-86642229 | Msa0480940:intron | 80.0% |
| ! | CCGGCGGCGGGAGAGGGGAG+AGG | + | chr3_3:86640882-86640901 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 86640781 | 86644355 | 86640781 | ID=Msa0480940;Name=Msa0480940 |
| chr3_3 | mRNA | 86640781 | 86644355 | 86640781 | ID=Msa0480940-mRNA-1;Parent=Msa0480940;Name=Msa0480940-mRNA-1;_AED=0.02;_eAED=0.02;_QI=164|1|1|1|1|1|5|339|303 |
| chr3_3 | exon | 86640781 | 86641197 | 86640781 | ID=Msa0480940-mRNA-1:exon:25034;Parent=Msa0480940-mRNA-1 |
| chr3_3 | exon | 86641376 | 86641408 | 86641376 | ID=Msa0480940-mRNA-1:exon:25033;Parent=Msa0480940-mRNA-1 |
| chr3_3 | exon | 86641513 | 86641660 | 86641513 | ID=Msa0480940-mRNA-1:exon:25032;Parent=Msa0480940-mRNA-1 |
| chr3_3 | exon | 86643457 | 86643779 | 86643457 | ID=Msa0480940-mRNA-1:exon:25031;Parent=Msa0480940-mRNA-1 |
| chr3_3 | exon | 86643862 | 86644355 | 86643862 | ID=Msa0480940-mRNA-1:exon:25030;Parent=Msa0480940-mRNA-1 |
| chr3_3 | five_prime_UTR | 86644192 | 86644355 | 86644192 | ID=Msa0480940-mRNA-1:five_prime_utr;Parent=Msa0480940-mRNA-1 |
| chr3_3 | CDS | 86643862 | 86644191 | 86643862 | ID=Msa0480940-mRNA-1:cds;Parent=Msa0480940-mRNA-1 |
| chr3_3 | CDS | 86643457 | 86643779 | 86643457 | ID=Msa0480940-mRNA-1:cds;Parent=Msa0480940-mRNA-1 |
| chr3_3 | CDS | 86641513 | 86641660 | 86641513 | ID=Msa0480940-mRNA-1:cds;Parent=Msa0480940-mRNA-1 |
| chr3_3 | CDS | 86641376 | 86641408 | 86641376 | ID=Msa0480940-mRNA-1:cds;Parent=Msa0480940-mRNA-1 |
| chr3_3 | CDS | 86641120 | 86641197 | 86641120 | ID=Msa0480940-mRNA-1:cds;Parent=Msa0480940-mRNA-1 |
| chr3_3 | three_prime_UTR | 86640781 | 86641119 | 86640781 | ID=Msa0480940-mRNA-1:three_prime_utr;Parent=Msa0480940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
