Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365430 | XP_003610050.1 | 96.083 | 434 | 9 | 3 | 1 | 429 | 1 | 431 | 0.0 | 834 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365430 | sp|Q9SZH4|PEP_ARATH | 58.524 | 393 | 156 | 5 | 23 | 409 | 50 | 441 | 3.92e-155 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365430 | G7JUA2 | 96.083 | 434 | 9 | 3 | 1 | 429 | 1 | 431 | 0.0 | 834 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa1365430 | 0.819623 | 1.053850e-52 | -8.615850e-47 |
| Msa0036540 | Msa1365430 | 0.823162 | 1.606381e-53 | -8.615850e-47 |
| Msa0095360 | Msa1365430 | 0.806176 | 9.340287e-50 | -8.615850e-47 |
| Msa0103480 | Msa1365430 | 0.807123 | 5.893729e-50 | -8.615850e-47 |
| Msa0103790 | Msa1365430 | 0.802708 | 4.936045e-49 | -8.615850e-47 |
| Msa0115190 | Msa1365430 | 0.801710 | 7.918532e-49 | -8.615850e-47 |
| Msa0117520 | Msa1365430 | 0.800912 | 1.153305e-48 | -8.615850e-47 |
| Msa1351540 | Msa1365430 | 0.836027 | 1.190327e-56 | -8.615850e-47 |
| Msa1365430 | Msa1395730 | 0.823198 | 1.575689e-53 | -8.615850e-47 |
| Msa1365430 | Msa1400930 | 0.802337 | 5.884548e-49 | -8.615850e-47 |
| Msa1365430 | Msa1458090 | 0.813991 | 1.933738e-51 | -8.615850e-47 |
| Msa0604290 | Msa1365430 | 0.824373 | 8.358962e-54 | -8.615850e-47 |
| Msa0640940 | Msa1365430 | 0.800632 | 1.315786e-48 | -8.615850e-47 |
| Msa0642970 | Msa1365430 | 0.808630 | 2.818763e-50 | -8.615850e-47 |
| Msa0645530 | Msa1365430 | 0.821211 | 4.555223e-53 | -8.615850e-47 |
| Msa0679360 | Msa1365430 | 0.811800 | 5.839783e-51 | -8.615850e-47 |
| Msa0685090 | Msa1365430 | 0.806390 | 8.418814e-50 | -8.615850e-47 |
| Msa0746170 | Msa1365430 | 0.813372 | 2.646450e-51 | -8.615850e-47 |
| Msa0746210 | Msa1365430 | 0.822499 | 2.293114e-53 | -8.615850e-47 |
| Msa0751010 | Msa1365430 | 0.803995 | 2.671527e-49 | -8.615850e-47 |
| Msa0756380 | Msa1365430 | 0.816135 | 6.464911e-52 | -8.615850e-47 |
| Msa0800370 | Msa1365430 | 0.826666 | 2.393246e-54 | -8.615850e-47 |
| Msa0120880 | Msa1365430 | 0.811525 | 6.701776e-51 | -8.615850e-47 |
| Msa0160960 | Msa1365430 | 0.805957 | 1.038642e-49 | -8.615850e-47 |
| Msa0173800 | Msa1365430 | 0.800810 | 1.210103e-48 | -8.615850e-47 |
| Msa0183870 | Msa1365430 | 0.807298 | 5.413021e-50 | -8.615850e-47 |
| Msa0202410 | Msa1365430 | 0.806287 | 8.851493e-50 | -8.615850e-47 |
| Msa1276970 | Msa1365430 | 0.821024 | 5.030390e-53 | -8.615850e-47 |
| Msa1307180 | Msa1365430 | 0.822225 | 2.654813e-53 | -8.615850e-47 |
| Msa1308220 | Msa1365430 | 0.813315 | 2.724286e-51 | -8.615850e-47 |
| Msa1316360 | Msa1365430 | 0.812812 | 3.512374e-51 | -8.615850e-47 |
| Msa1336560 | Msa1365430 | 0.823203 | 1.571961e-53 | -8.615850e-47 |
| Msa0382370 | Msa1365430 | 0.843129 | 1.694443e-58 | -8.615850e-47 |
| Msa0385500 | Msa1365430 | 0.816243 | 6.114406e-52 | -8.615850e-47 |
| Msa0388730 | Msa1365430 | 0.807711 | 4.423659e-50 | -8.615850e-47 |
| Msa0432160 | Msa1365430 | 0.818928 | 1.517732e-52 | -8.615850e-47 |
| Msa0450400 | Msa1365430 | -0.810953 | 8.918372e-51 | -8.615850e-47 |
| Msa0476680 | Msa1365430 | 0.825417 | 4.740196e-54 | -8.615850e-47 |
| Msa0985180 | Msa1365430 | 0.810411 | 1.168196e-50 | -8.615850e-47 |
| Msa1089450 | Msa1365430 | 0.806199 | 9.235363e-50 | -8.615850e-47 |
| Msa0257490 | Msa1365430 | 0.821161 | 4.677101e-53 | -8.615850e-47 |
| Msa0281530 | Msa1365430 | 0.817217 | 3.698630e-52 | -8.615850e-47 |
| Msa0296790 | Msa1365430 | 0.822475 | 2.322665e-53 | -8.615850e-47 |
| Msa0317970 | Msa1365430 | 0.807885 | 4.061661e-50 | -8.615850e-47 |
| Msa0320590 | Msa1365430 | 0.803158 | 3.982985e-49 | -8.615850e-47 |
| Msa0321690 | Msa1365430 | 0.804652 | 1.949012e-49 | -8.615850e-47 |
| Msa1128270 | Msa1365430 | 0.817820 | 2.703729e-52 | -8.615850e-47 |
| Msa1128280 | Msa1365430 | 0.809123 | 2.210969e-50 | -8.615850e-47 |
| Msa1165270 | Msa1365430 | 0.814124 | 1.807514e-51 | -8.615850e-47 |
| Msa1221330 | Msa1365430 | 0.809187 | 2.141464e-50 | -8.615850e-47 |
| Msa0491000 | Msa1365430 | 0.813934 | 1.990827e-51 | -8.615850e-47 |
| Msa0518170 | Msa1365430 | 0.811894 | 5.571448e-51 | -8.615850e-47 |
| Msa0519160 | Msa1365430 | 0.824610 | 7.351372e-54 | -8.615850e-47 |
| Msa0521010 | Msa1365430 | 0.825687 | 4.091994e-54 | -8.615850e-47 |
| Msa0536350 | Msa1365430 | 0.815536 | 8.790930e-52 | -8.615850e-47 |
| Msa0542290 | Msa1365430 | 0.818153 | 2.274563e-52 | -8.615850e-47 |
| Msa0542560 | Msa1365430 | 0.829543 | 4.854266e-55 | -8.615850e-47 |
| Msa0581400 | Msa1365430 | 0.800981 | 1.116778e-48 | -8.615850e-47 |
| Msa0883520 | Msa1365430 | 0.810034 | 1.408365e-50 | -8.615850e-47 |
| Msa0892640 | Msa1365430 | 0.819336 | 1.225544e-52 | -8.615850e-47 |
| Msa0910620 | Msa1365430 | 0.805362 | 1.384658e-49 | -8.615850e-47 |
| Msa0944200 | Msa1365430 | 0.800932 | 1.142885e-48 | -8.615850e-47 |
| Msa0974950 | Msa1365430 | 0.834522 | 2.854932e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365430 | MtrunA17_Chr4g0071791 | 96.083 | 434 | 9 | 3 | 1 | 429 | 1 | 431 | 0.0 | 834 |
| Msa1365430 | MtrunA17_Chr2g0298721 | 70.146 | 412 | 105 | 4 | 35 | 429 | 60 | 470 | 0.0 | 538 |
| Msa1365430 | MtrunA17_Chr7g0274301 | 42.424 | 363 | 179 | 9 | 35 | 378 | 105 | 456 | 7.91e-89 | 278 |
| Msa1365430 | MtrunA17_Chr1g0184511 | 39.100 | 422 | 227 | 12 | 27 | 426 | 146 | 559 | 2.20e-78 | 253 |
| Msa1365430 | MtrunA17_Chr4g0049801 | 40.116 | 172 | 94 | 5 | 43 | 210 | 18 | 184 | 3.04e-24 | 105 |
| Msa1365430 | MtrunA17_Chr4g0049801 | 24.377 | 361 | 231 | 7 | 47 | 380 | 268 | 613 | 1.91e-18 | 87.8 |
| Msa1365430 | MtrunA17_Chr7g0249721 | 34.225 | 187 | 108 | 5 | 33 | 211 | 90 | 269 | 1.13e-21 | 95.1 |
| Msa1365430 | MtrunA17_Chr3g0140741 | 26.593 | 361 | 229 | 10 | 47 | 384 | 314 | 661 | 5.00e-21 | 95.9 |
| Msa1365430 | MtrunA17_Chr7g0217681 | 34.091 | 176 | 104 | 2 | 46 | 209 | 50 | 225 | 5.59e-21 | 95.5 |
| Msa1365430 | MtrunA17_Chr2g0279641 | 30.275 | 218 | 123 | 5 | 7 | 210 | 22 | 224 | 2.80e-19 | 90.5 |
| Msa1365430 | MtrunA17_Chr2g0279641 | 28.070 | 171 | 115 | 3 | 47 | 213 | 333 | 499 | 8.22e-13 | 70.5 |
| Msa1365430 | MtrunA17_Chr5g0412061 | 32.000 | 200 | 109 | 5 | 21 | 202 | 6 | 196 | 4.47e-19 | 89.7 |
| Msa1365430 | MtrunA17_Chr5g0412061 | 23.925 | 372 | 247 | 7 | 16 | 378 | 246 | 590 | 8.33e-14 | 73.6 |
| Msa1365430 | MtrunA17_Chr6g0453421 | 30.409 | 171 | 110 | 2 | 46 | 209 | 48 | 216 | 8.49e-18 | 85.5 |
| Msa1365430 | MtrunA17_Chr4g0002241 | 27.602 | 221 | 138 | 5 | 11 | 220 | 184 | 393 | 9.15e-18 | 85.5 |
| Msa1365430 | MtrunA17_Chr8g0376551 | 28.655 | 342 | 209 | 10 | 46 | 378 | 316 | 631 | 2.16e-17 | 84.7 |
| Msa1365430 | MtrunA17_Chr8g0376551 | 29.947 | 187 | 110 | 6 | 46 | 212 | 41 | 226 | 8.81e-13 | 70.1 |
| Msa1365430 | MtrunA17_Chr2g0285771 | 26.316 | 342 | 217 | 8 | 46 | 378 | 314 | 629 | 6.91e-17 | 83.2 |
| Msa1365430 | MtrunA17_Chr2g0285771 | 27.371 | 369 | 215 | 15 | 47 | 383 | 44 | 391 | 7.63e-13 | 70.5 |
| Msa1365430 | MtrunA17_Chr3g0127051 | 24.496 | 347 | 218 | 9 | 46 | 383 | 332 | 643 | 5.57e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365430 | AT4G26000.1 | 58.524 | 393 | 156 | 5 | 23 | 409 | 50 | 441 | 3.98e-156 | 451 |
| Msa1365430 | AT3G04610.3 | 41.289 | 419 | 197 | 14 | 35 | 426 | 153 | 549 | 1.01e-87 | 277 |
| Msa1365430 | AT3G04610.4 | 41.289 | 419 | 197 | 14 | 35 | 426 | 153 | 549 | 1.01e-87 | 277 |
| Msa1365430 | AT3G04610.2 | 41.289 | 419 | 197 | 14 | 35 | 426 | 177 | 573 | 1.52e-87 | 278 |
| Msa1365430 | AT3G04610.1 | 41.289 | 419 | 197 | 14 | 35 | 426 | 177 | 573 | 1.52e-87 | 278 |
| Msa1365430 | AT1G51580.1 | 24.462 | 372 | 208 | 8 | 47 | 378 | 278 | 616 | 9.79e-20 | 92.0 |
| Msa1365430 | AT5G15270.3 | 30.636 | 173 | 111 | 2 | 46 | 211 | 51 | 221 | 4.62e-18 | 86.7 |
| Msa1365430 | AT5G15270.3 | 28.497 | 193 | 127 | 2 | 47 | 234 | 286 | 472 | 5.39e-15 | 77.4 |
| Msa1365430 | AT5G15270.2 | 30.636 | 173 | 111 | 2 | 46 | 211 | 51 | 221 | 4.66e-18 | 87.0 |
| Msa1365430 | AT5G15270.2 | 28.497 | 193 | 127 | 2 | 47 | 234 | 286 | 472 | 5.69e-15 | 77.4 |
| Msa1365430 | AT5G15270.1 | 30.636 | 173 | 111 | 2 | 46 | 211 | 51 | 221 | 4.66e-18 | 87.0 |
| Msa1365430 | AT5G15270.1 | 28.497 | 193 | 127 | 2 | 47 | 234 | 286 | 472 | 5.69e-15 | 77.4 |
| Msa1365430 | AT5G64390.1 | 28.495 | 186 | 97 | 5 | 43 | 205 | 45 | 217 | 5.77e-16 | 80.9 |
| Msa1365430 | AT5G64390.1 | 24.681 | 235 | 168 | 3 | 46 | 275 | 453 | 683 | 7.83e-15 | 77.4 |
| Msa1365430 | AT5G64390.3 | 28.495 | 186 | 97 | 5 | 43 | 205 | 45 | 217 | 5.80e-16 | 80.9 |
| Msa1365430 | AT5G64390.3 | 24.681 | 235 | 168 | 3 | 46 | 275 | 453 | 683 | 8.37e-15 | 77.4 |
| Msa1365430 | AT5G64390.2 | 28.495 | 186 | 97 | 5 | 43 | 205 | 45 | 217 | 6.89e-16 | 80.5 |
| Msa1365430 | AT5G64390.2 | 24.681 | 235 | 168 | 3 | 46 | 275 | 453 | 683 | 1.01e-14 | 77.0 |
| Msa1365430 | AT4G18375.3 | 26.005 | 373 | 222 | 11 | 46 | 382 | 37 | 391 | 9.27e-16 | 79.7 |
| Msa1365430 | AT4G18375.2 | 26.005 | 373 | 222 | 11 | 46 | 382 | 37 | 391 | 1.57e-15 | 79.3 |
| Msa1365430 | AT4G18375.2 | 23.370 | 368 | 223 | 9 | 22 | 378 | 284 | 603 | 1.17e-11 | 67.0 |
| Msa1365430 | AT5G46190.2 | 34.463 | 177 | 99 | 4 | 46 | 205 | 45 | 221 | 1.00e-13 | 73.6 |
| Msa1365430 | AT5G46190.1 | 34.463 | 177 | 99 | 4 | 46 | 205 | 45 | 221 | 1.11e-13 | 73.6 |
| Msa1365430 | AT5G46190.1 | 23.426 | 397 | 239 | 11 | 3 | 378 | 289 | 641 | 3.25e-11 | 65.9 |
| Msa1365430 | AT5G46190.4 | 34.463 | 177 | 99 | 4 | 46 | 205 | 45 | 221 | 1.11e-13 | 73.6 |
| Msa1365430 | AT5G46190.4 | 23.426 | 397 | 239 | 11 | 3 | 378 | 289 | 641 | 3.25e-11 | 65.9 |
| Msa1365430 | AT5G46190.3 | 34.463 | 177 | 99 | 4 | 46 | 205 | 45 | 221 | 1.11e-13 | 73.6 |
| Msa1365430 | AT5G46190.3 | 23.426 | 397 | 239 | 11 | 3 | 378 | 289 | 641 | 3.25e-11 | 65.9 |
| Msa1365430 | AT2G22600.1 | 25.132 | 378 | 249 | 9 | 27 | 381 | 266 | 632 | 1.22e-13 | 73.2 |
| Msa1365430 | AT5G53060.1 | 24.425 | 348 | 219 | 8 | 46 | 378 | 326 | 644 | 5.44e-13 | 71.2 |
| Msa1365430 | AT4G18375.1 | 23.370 | 368 | 223 | 9 | 22 | 378 | 71 | 390 | 1.28e-12 | 69.3 |
| Msa1365430 | AT5G53060.3 | 29.762 | 168 | 109 | 2 | 46 | 213 | 326 | 484 | 1.80e-12 | 69.7 |
| Msa1365430 | AT1G14170.3 | 34.177 | 158 | 95 | 3 | 66 | 221 | 290 | 440 | 5.29e-12 | 67.8 |
| Msa1365430 | AT1G14170.3 | 31.214 | 173 | 104 | 6 | 46 | 205 | 45 | 215 | 6.53e-11 | 64.7 |
| Msa1365430 | AT1G14170.1 | 34.177 | 158 | 95 | 3 | 66 | 221 | 265 | 415 | 5.75e-12 | 67.8 |
| Msa1365430 | AT1G14170.1 | 30.899 | 178 | 108 | 6 | 46 | 210 | 20 | 195 | 6.82e-11 | 64.3 |
| Msa1365430 | AT1G14170.2 | 34.177 | 158 | 95 | 3 | 66 | 221 | 257 | 407 | 6.05e-12 | 67.8 |
| Msa1365430 | AT1G14170.2 | 30.899 | 178 | 108 | 6 | 46 | 210 | 12 | 187 | 7.32e-11 | 64.3 |
Find 139 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATTCTTCTTCTATTTC+TGG | 0.084837 | tig0018287:-18303 | Msa1365430:CDS |
| CGGGCACCTGAGAAAGTTTC+TGG | 0.186233 | tig0018287:-18685 | Msa1365430:CDS |
| TAGTACTTTCAGACTTTAAA+TGG | 0.249582 | tig0018287:-16311 | Msa1365430:exon |
| ATTATGTTCCATCCGTTTAT+TGG | 0.249796 | tig0018287:-19989 | Msa1365430:CDS |
| GAAATCATTGTGGAAATAAA+AGG | 0.265148 | tig0018287:-17885 | Msa1365430:CDS |
| GAGGTCTTCTTACTCTCAAC+TGG | 0.283450 | tig0018287:-16395 | Msa1365430:CDS |
| TCTTGATCAATTCCCCTTTA+CGG | 0.290644 | tig0018287:+20603 | None:intergenic |
| TATTTCTGGTCTTCGTTCTT+CGG | 0.294141 | tig0018287:-18289 | Msa1365430:CDS |
| GAAACTGAACATCCTGAAAA+TGG | 0.294745 | tig0018287:+16112 | None:intergenic |
| CTGCAATGGATGCTATTCTT+AGG | 0.299073 | tig0018287:-20077 | Msa1365430:CDS |
| TACAATGGGTACGGATCTTC+TGG | 0.329461 | tig0018287:-16346 | Msa1365430:CDS |
| CTTGAAGGTTCTTAAAGCTT+TGG | 0.331020 | tig0018287:-18718 | Msa1365430:CDS |
| TCCTATGCAGAGGACATAAT+TGG | 0.332684 | tig0018287:-17987 | Msa1365430:CDS |
| TGTATTATTGTCATCAGTTT+CGG | 0.338267 | tig0018287:+20029 | None:intergenic |
| AACAGCACAACAATTGATTC+AGG | 0.346155 | tig0018287:-17844 | Msa1365430:intron |
| AGGCATCTGTCTGACGGTCT+TGG | 0.349973 | tig0018287:+18472 | None:intergenic |
| GTTAAAGTTGGCATCATCAT+AGG | 0.362735 | tig0018287:-20626 | Msa1365430:CDS |
| CAAAGCTTTAAGAACCTTCA+AGG | 0.362867 | tig0018287:+18719 | None:intergenic |
| AGCAATAGTTTCATTGTGAT+TGG | 0.368603 | tig0018287:+16447 | None:intergenic |
| CTCCTCAATTAAAGCTATAC+AGG | 0.370965 | tig0018287:-19926 | Msa1365430:CDS |
| TTGAGGCAAGTTGTCCCAGC+TGG | 0.374662 | tig0018287:-16268 | Msa1365430:three_prime_UTR |
| TCCTCGACAATGTCATTGTA+TGG | 0.391211 | tig0018287:-18327 | Msa1365430:CDS |
| TGCTGATCGTGAAAGTCAAT+TGG | 0.394247 | tig0018287:-18364 | Msa1365430:CDS |
| CACTGTAGATCCTAAGGTTA+AGG | 0.394521 | tig0018287:+16063 | None:intergenic |
| GGCATCTGTCTGACGGTCTT+GGG | 0.398994 | tig0018287:+18473 | None:intergenic |
| TTGGTTTGAACCTTAACCTT+AGG | 0.409221 | tig0018287:-16073 | Msa1365430:three_prime_UTR |
| GACTTTAAATGGTATCTTGA+AGG | 0.417719 | tig0018287:-16300 | Msa1365430:exon |
| GACAATAATACAGCAGCTGC+AGG | 0.418793 | tig0018287:-20018 | Msa1365430:CDS |
| TATTTCCACAATGATTTCAT+CGG | 0.420763 | tig0018287:+17890 | None:intergenic |
| GTCATCAGTTTCGGATAATC+CGG | 0.421364 | tig0018287:+20038 | None:intergenic |
| GGGTACGGATCTTCTGGTCC+TGG | 0.423027 | tig0018287:-16340 | Msa1365430:CDS |
| TGGAGAGTGCCGTTTGGAAT+TGG | 0.423821 | tig0018287:+20767 | None:intergenic |
| GCATCATCATAGGCCGTAAA+GGG | 0.426099 | tig0018287:-20616 | Msa1365430:CDS |
| ATTGTTGTGCTGTTTGAACT+TGG | 0.437277 | tig0018287:+17853 | None:intergenic |
| GTGATATTGACAACAGCTAT+TGG | 0.437605 | tig0018287:+15994 | None:intergenic |
| TTATCTGATATATCATCTAA+TGG | 0.440815 | tig0018287:-16200 | Msa1365430:three_prime_UTR |
| ACGCAAGCTATCAATTTGAT+AGG | 0.447582 | tig0018287:-19958 | Msa1365430:CDS |
| AGATTGTATATGATTCTGAT+TGG | 0.448375 | tig0018287:+20747 | None:intergenic |
| ATGATGCCAACTTTAACAAC+GGG | 0.449343 | tig0018287:+20632 | None:intergenic |
| GGTACGGATCTTCTGGTCCT+GGG | 0.451797 | tig0018287:-16339 | Msa1365430:CDS |
| ATTGTTCCCGTTGTTAAAGT+TGG | 0.452860 | tig0018287:-20638 | Msa1365430:CDS |
| TATTGACTGTGCAGGAGAGC+AGG | 0.456428 | tig0018287:-17917 | Msa1365430:CDS |
| ATTTCCACAATGATTTCATC+GGG | 0.456878 | tig0018287:+17891 | None:intergenic |
| GCGTTGACGCCACCAATAAA+CGG | 0.457916 | tig0018287:+19977 | None:intergenic |
| TTGTCCCAGCTGGGTCTGAT+TGG | 0.458031 | tig0018287:-16258 | Msa1365430:three_prime_UTR |
| CTAAGAATAGCATCCATTGC+AGG | 0.462092 | tig0018287:+20078 | None:intergenic |
| GAGGACATAATTGGTATTCA+AGG | 0.466526 | tig0018287:-17978 | Msa1365430:CDS |
| TTCGTAATGTATATGTGCAT+TGG | 0.469656 | tig0018287:-16092 | Msa1365430:three_prime_UTR |
| AAGAGATGGCCAGGTTGGCC+TGG | 0.476390 | tig0018287:-20680 | Msa1365430:CDS |
| GGCTCTACCGCCGTGGCCAT+AGG | 0.480725 | tig0018287:+20788 | None:intergenic |
| GGCATCATCATAGGCCGTAA+AGG | 0.484742 | tig0018287:-20617 | Msa1365430:CDS |
| TGCTGTTTGAACTTGGGTGG+AGG | 0.485466 | tig0018287:+17860 | None:intergenic |
| GATGATGCCAACTTTAACAA+CGG | 0.485812 | tig0018287:+20631 | None:intergenic |
| TGAAAGGATTATTGAACTGC+AGG | 0.485902 | tig0018287:-18748 | Msa1365430:CDS |
| AGAAGATCCGTACCCATTGT+AGG | 0.486067 | tig0018287:+16348 | None:intergenic |
| TATATCGGGAAAAGAGGATC+TGG | 0.486264 | tig0018287:-20115 | Msa1365430:CDS |
| ATGTTCCATCCGTTTATTGG+TGG | 0.486807 | tig0018287:-19986 | Msa1365430:CDS |
| CAAAGCCACTGTAGATCCTA+AGG | 0.487993 | tig0018287:+16057 | None:intergenic |
| TCTGATTGGAGAGTGCCGTT+TGG | 0.495725 | tig0018287:+20761 | None:intergenic |
| AAGCTTTGGAAGCCGTAGTC+GGG | 0.495879 | tig0018287:-18704 | Msa1365430:CDS |
| CGTGTTCTTGACGCTGCAGT+TGG | 0.496189 | tig0018287:-20551 | Msa1365430:CDS |
| CATTCCTCTTTCCACAAAGA+GGG | 0.497392 | tig0018287:-18397 | Msa1365430:CDS |
| TTCCTGTATAGCTTTAATTG+AGG | 0.497575 | tig0018287:+19924 | None:intergenic |
| GAATCCCTCTTTGTGGAAAG+AGG | 0.498683 | tig0018287:+18393 | None:intergenic |
| ATCCATCACAACCCTACAAT+GGG | 0.499788 | tig0018287:-16360 | Msa1365430:CDS |
| AAAGAAAGAATCCCTCTTTG+TGG | 0.501252 | tig0018287:+18386 | None:intergenic |
| TCATCGGCACCGACATAAGA+TGG | 0.505569 | tig0018287:+18768 | None:intergenic |
| TATCAACCAGAAACTTTCTC+AGG | 0.507569 | tig0018287:+18679 | None:intergenic |
| CTTTCTCAGGTGCCCGACTA+CGG | 0.516009 | tig0018287:+18692 | None:intergenic |
| GGTGCTTATATCGGGAAAAG+AGG | 0.518954 | tig0018287:-20121 | Msa1365430:CDS |
| ACGCAGTGACCAGGCCAACC+TGG | 0.520259 | tig0018287:+20671 | None:intergenic |
| AAAGCTATACAGGAAAATAC+AGG | 0.520447 | tig0018287:-19916 | Msa1365430:CDS |
| AAAAGTGTTTAGAGAGGCGT+AGG | 0.522698 | tig0018287:+20812 | None:intergenic |
| GGAATGTCAGCAACAATGCT+AGG | 0.523562 | tig0018287:+18414 | None:intergenic |
| CTGAATCTGCAGAGAAGAGA+TGG | 0.526337 | tig0018287:-20694 | Msa1365430:CDS |
| TGAGGCAAGTTGTCCCAGCT+GGG | 0.527671 | tig0018287:-16267 | Msa1365430:three_prime_UTR |
| CTTATGTCGGTGCCGATGAA+AGG | 0.529816 | tig0018287:-18764 | Msa1365430:CDS |
| TCTGCAGAGAAGAGATGGCC+AGG | 0.532522 | tig0018287:-20689 | Msa1365430:CDS |
| CTAGATTAGACACGGGGCTG+AGG | 0.533084 | tig0018287:-16414 | Msa1365430:CDS |
| AGCCGGAAAACGCAGTGACC+AGG | 0.534655 | tig0018287:+20662 | None:intergenic |
| TTGTGCTGTTTGAACTTGGG+TGG | 0.535739 | tig0018287:+17857 | None:intergenic |
| CAGTTCAATAATCCTTTCAT+CGG | 0.536800 | tig0018287:+18752 | None:intergenic |
| TTGTTGTGCTGTTTGAACTT+GGG | 0.538146 | tig0018287:+17854 | None:intergenic |
| ACTACATTCGTCGCACTAGT+GGG | 0.538673 | tig0018287:-17944 | Msa1365430:CDS |
| GGCACCGCTCTCTCCTGCAA+TGG | 0.541435 | tig0018287:-20091 | Msa1365430:CDS |
| AAGACCGTCAGACAGATGCC+TGG | 0.542564 | tig0018287:-18470 | Msa1365430:CDS |
| CAGAGAAGAGATGGCCAGGT+TGG | 0.543462 | tig0018287:-20685 | Msa1365430:CDS |
| AAAGCTTTGGAAGCCGTAGT+CGG | 0.546763 | tig0018287:-18705 | Msa1365430:CDS |
| TAGTGATGGTTTGTCAGCCC+AGG | 0.549218 | tig0018287:+18452 | None:intergenic |
| CAATAATACAGCAGCTGCAG+GGG | 0.551141 | tig0018287:-20016 | Msa1365430:CDS |
| TACCCATTGTAGGGTTGTGA+TGG | 0.554576 | tig0018287:+16358 | None:intergenic |
| TGGGGCTATATTGACTGTGC+AGG | 0.554586 | tig0018287:-17925 | Msa1365430:CDS |
| TGTAGTAACAATGGAAGCAC+TGG | 0.556455 | tig0018287:+18254 | None:intergenic |
| GACTACATTCGTCGCACTAG+TGG | 0.557334 | tig0018287:-17945 | Msa1365430:CDS |
| ACATTCCTCTTTCCACAAAG+AGG | 0.557523 | tig0018287:-18398 | Msa1365430:CDS |
| ACATTCCAATCAGACCCAGC+TGG | 0.559283 | tig0018287:+16253 | None:intergenic |
| AGACCGTCAGACAGATGCCT+GGG | 0.560346 | tig0018287:-18469 | Msa1365430:CDS |
| GCAGATTCAGATTCGTCCGT+AGG | 0.566932 | tig0018287:+20707 | None:intergenic |
| ACCAATTATGTCCTCTGCAT+AGG | 0.567480 | tig0018287:+17986 | None:intergenic |
| TAACAACGGGAACAATTAGC+CGG | 0.568821 | tig0018287:+20645 | None:intergenic |
| ACTGCAGGGAGAAACCTTGA+AGG | 0.570592 | tig0018287:-18733 | Msa1365430:CDS |
| CAGCCCAGGCATCTGTCTGA+CGG | 0.571416 | tig0018287:+18466 | None:intergenic |
| CGTCATCGTATTGCTGGCTG+AGG | 0.577856 | tig0018287:-20909 | None:intergenic |
| GAAGATCCGTACCCATTGTA+GGG | 0.578511 | tig0018287:+16349 | None:intergenic |
| ATTGACTGTGCAGGAGAGCA+GGG | 0.578791 | tig0018287:-17916 | Msa1365430:CDS |
| TGCGAAGCACTATGTAGTGA+TGG | 0.579277 | tig0018287:+18438 | None:intergenic |
| CATTCCAATCAGACCCAGCT+GGG | 0.581375 | tig0018287:+16254 | None:intergenic |
| TATCCATCACAACCCTACAA+TGG | 0.583759 | tig0018287:-16361 | Msa1365430:CDS |
| ACAATAATACAGCAGCTGCA+GGG | 0.584620 | tig0018287:-20017 | Msa1365430:CDS |
| GTTGCTTACTGTAGTAACAA+TGG | 0.588635 | tig0018287:+18245 | None:intergenic |
| TCACAACCCTACAATGGGTA+CGG | 0.591745 | tig0018287:-16355 | Msa1365430:CDS |
| GCGGTAGAGCCAATTCCAAA+CGG | 0.594551 | tig0018287:-20776 | Msa1365430:CDS |
| ATTGTAGGGTTGTGATGGAT+AGG | 0.598593 | tig0018287:+16363 | None:intergenic |
| TGGAATTGGCTCTACCGCCG+TGG | 0.607053 | tig0018287:+20781 | None:intergenic |
| AGGACATAATTGGTATTCAA+GGG | 0.609523 | tig0018287:-17977 | Msa1365430:CDS |
| TGACGCCACCAATAAACGGA+TGG | 0.614112 | tig0018287:+19981 | None:intergenic |
| ATCAATTTGATAGGAAAACA+AGG | 0.615075 | tig0018287:-19949 | Msa1365430:CDS |
| TGACGCCGCTGCAAATCCTA+CGG | 0.617186 | tig0018287:-20723 | Msa1365430:CDS |
| GTACGGATCTTCTGGTCCTG+GGG | 0.618851 | tig0018287:-16338 | Msa1365430:CDS |
| AGGTCTTCTTACTCTCAACT+GGG | 0.621753 | tig0018287:-16394 | Msa1365430:CDS |
| ATCGGGAAAAGAGGATCTGG+AGG | 0.631561 | tig0018287:-20112 | Msa1365430:CDS |
| CTGAAAGTACTATAATCCCC+AGG | 0.631671 | tig0018287:+16322 | None:intergenic |
| ATGTCCTCTGCATAGGACAA+TGG | 0.635631 | tig0018287:+17993 | None:intergenic |
| CTTGAAGGAACATCATCTTG+AGG | 0.636452 | tig0018287:-16285 | Msa1365430:three_prime_UTR |
| TAGTTATGCTAGATTAGACA+CGG | 0.640557 | tig0018287:-16422 | Msa1365430:CDS |
| AGTTATGCTAGATTAGACAC+GGG | 0.642981 | tig0018287:-16421 | Msa1365430:CDS |
| GCATCCATTGCAGGAGAGAG+CGG | 0.649701 | tig0018287:+20087 | None:intergenic |
| GACGAACTTCCATCTTATGT+CGG | 0.649709 | tig0018287:-18777 | Msa1365430:CDS |
| AATACCATTGTCCTATGCAG+AGG | 0.651307 | tig0018287:-17997 | Msa1365430:CDS |
| GAAAGGATTATTGAACTGCA+GGG | 0.652230 | tig0018287:-18747 | Msa1365430:CDS |
| TTCGTCCGTAGGATTTGCAG+CGG | 0.654584 | tig0018287:+20718 | None:intergenic |
| TCCATACAATGACATTGTCG+AGG | 0.654769 | tig0018287:+18326 | None:intergenic |
| CTACATTCGTCGCACTAGTG+GGG | 0.658236 | tig0018287:-17943 | Msa1365430:CDS |
| CATCATCATAGGCCGTAAAG+GGG | 0.668357 | tig0018287:-20615 | Msa1365430:CDS |
| GGTGCCCGATGAAATCATTG+TGG | 0.669606 | tig0018287:-17895 | Msa1365430:CDS |
| CTTAACCTTAGGATCTACAG+TGG | 0.669648 | tig0018287:-16062 | Msa1365430:three_prime_UTR |
| ATAGGGAAAAGTGTTTAGAG+AGG | 0.693796 | tig0018287:+20806 | None:intergenic |
| GTAACAGTGTAGAGACAACA+AGG | 0.724647 | tig0018287:-20876 | Msa1365430:five_prime_UTR |
| GTTATGCTAGATTAGACACG+GGG | 0.768549 | tig0018287:-16420 | Msa1365430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAAATATATTTTAACTAT+TGG | - | tig0018287:17094-17113 | Msa1365430:intron | 10.0% |
| !! | TATTAATCTACTTTAATTAT+AGG | - | tig0018287:19392-19411 | Msa1365430:intron | 10.0% |
| !! | ATTAATCTACTTTAATTATA+GGG | - | tig0018287:19393-19412 | Msa1365430:intron | 10.0% |
| !!! | ATTTCATTATCATCTTTTTA+GGG | - | tig0018287:16381-16400 | Msa1365430:CDS | 15.0% |
| !!! | TCCAATTACATTTTTATTTT+AGG | - | tig0018287:16733-16752 | Msa1365430:intron | 15.0% |
| !! | ACCTAAAATAAAAATGTAAT+TGG | + | tig0018287:16737-16756 | None:intergenic | 15.0% |
| !! | TGCTAACAAATTTATAATTA+GGG | + | tig0018287:17385-17404 | None:intergenic | 15.0% |
| !! | TTGCTAACAAATTTATAATT+AGG | + | tig0018287:17386-17405 | None:intergenic | 15.0% |
| !!! | TTCATTTTATTTTATGTTTG+TGG | - | tig0018287:17687-17706 | Msa1365430:intron | 15.0% |
| !! | TTTGAGCTTAATTAAAAATT+TGG | + | tig0018287:18267-18286 | None:intergenic | 15.0% |
| !! | AAGAATTATACATTACTAAT+TGG | - | tig0018287:19299-19318 | Msa1365430:intron | 15.0% |
| !! | GACTAAAAATAAGTAATTAA+AGG | - | tig0018287:19348-19367 | Msa1365430:intron | 15.0% |
| !! | TATAACAAATGAAATGAATA+TGG | + | tig0018287:19793-19812 | None:intergenic | 15.0% |
| !!! | ATTTTGAGAAAAAGAAAAAT+GGG | + | tig0018287:19906-19925 | None:intergenic | 15.0% |
| !!! | TATTTTGAGAAAAAGAAAAA+TGG | + | tig0018287:19907-19926 | None:intergenic | 15.0% |
| !! | ATTATATATACAATTGTTTC+TGG | - | tig0018287:20137-20156 | Msa1365430:intron | 15.0% |
| !! | TGAAAAATAAGAAATAAATC+AGG | + | tig0018287:20262-20281 | None:intergenic | 15.0% |
| !!! | CATTTCATTATCATCTTTTT+AGG | - | tig0018287:16380-16399 | Msa1365430:CDS | 20.0% |
| !!! | TTTATTTTAGGTGCTTATAT+CGG | - | tig0018287:16745-16764 | Msa1365430:intron | 20.0% |
| !!! | ATATTTTAACTATTGGTGTT+TGG | - | tig0018287:17101-17120 | Msa1365430:intron | 20.0% |
| !! | GCTAACAAATTTATAATTAG+GGG | + | tig0018287:17384-17403 | None:intergenic | 20.0% |
| !! | TTGAATTTCACAAACAAATT+AGG | + | tig0018287:17425-17444 | None:intergenic | 20.0% |
| !! | AATCATTAGAGAGAAAATTA+GGG | - | tig0018287:17740-17759 | Msa1365430:intron | 20.0% |
| !! | AATCATTAGAGAGAAAATTA+GGG | - | tig0018287:17740-17759 | Msa1365430:intron | 20.0% |
| !! | AGTACAAATATATTTGTTCA+TGG | + | tig0018287:18703-18722 | None:intergenic | 20.0% |
| !! | AATTATGATACACGATTATT+TGG | + | tig0018287:18741-18760 | None:intergenic | 20.0% |
| !!! | AGAAAAAAGTTCAATTTTTC+TGG | - | tig0018287:19069-19088 | Msa1365430:intron | 20.0% |
| !! | TCAATACCAAAAAAAGTAAA+AGG | + | tig0018287:19096-19115 | None:intergenic | 20.0% |
| !!! | TAATTCTTTTTGAGAAAACA+AGG | + | tig0018287:19287-19306 | None:intergenic | 20.0% |
| !! | AAACATATAACCATTATGTT+TGG | - | tig0018287:19601-19620 | Msa1365430:intron | 20.0% |
| !! | ATTCAATAGGGTATAATAAT+GGG | + | tig0018287:19967-19986 | None:intergenic | 20.0% |
| !! | AATTCAATAGGGTATAATAA+TGG | + | tig0018287:19968-19987 | None:intergenic | 20.0% |
| !! | AAGTTGAATGAAATTCAATA+GGG | + | tig0018287:19979-19998 | None:intergenic | 20.0% |
| !!! | TAAGTTGAATGAAATTCAAT+AGG | + | tig0018287:19980-19999 | None:intergenic | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | + | tig0018287:20058-20077 | None:intergenic | 20.0% |
| !!! | GCTGTTTTTTTAATCAATTA+AGG | - | tig0018287:20204-20223 | Msa1365430:intron | 20.0% |
| !! | TTATCTGATATATCATCTAA+TGG | - | tig0018287:20675-20694 | Msa1365430:CDS | 20.0% |
| !!! | TAATGGTGTAATTTTAAATG+CGG | - | tig0018287:20692-20711 | Msa1365430:CDS | 20.0% |
| !!! | ATATCAAATTAACCATTTTC+AGG | - | tig0018287:20751-20770 | Msa1365430:CDS | 20.0% |
| ! | AGATTGTATATGATTCTGAT+TGG | + | tig0018287:16131-16150 | None:intergenic | 25.0% |
| ! | AAAAAACTTACAATTCGATC+AGG | + | tig0018287:16354-16373 | None:intergenic | 25.0% |
| ! | TTTAATGCTTATGTTATTGC+TGG | - | tig0018287:16500-16519 | Msa1365430:intron | 25.0% |
| ! | ATTAAAGAATCTTTGCTTGT+AGG | - | tig0018287:16576-16595 | Msa1365430:intron | 25.0% |
| ! | TTATATGACTTGATGCTTTA+TGG | - | tig0018287:16621-16640 | Msa1365430:intron | 25.0% |
| !!! | TTATTTTAGGTGCTTATATC+GGG | - | tig0018287:16746-16765 | Msa1365430:intron | 25.0% |
| !! | AGGATTTTTAAACGTATATC+CGG | - | tig0018287:16818-16837 | Msa1365430:intron | 25.0% |
| ! | TGTATTATTGTCATCAGTTT+CGG | + | tig0018287:16849-16868 | None:intergenic | 25.0% |
| ! | ATCAATTTGATAGGAAAACA+AGG | - | tig0018287:16926-16945 | Msa1365430:intron | 25.0% |
| !!! | TGTTGTTATTAGAGTTTTGT+CGG | - | tig0018287:16982-17001 | Msa1365430:intron | 25.0% |
| ! | TGTGGAATATACTTGAAATA+AGG | - | tig0018287:17145-17164 | Msa1365430:intron | 25.0% |
| ! | GTGGAATATACTTGAAATAA+GGG | - | tig0018287:17146-17165 | Msa1365430:intron | 25.0% |
| ! | ACTTAAAAGTAAATCTAAGG+TGG | + | tig0018287:17525-17544 | None:intergenic | 25.0% |
| ! | TGCACTTAAAAGTAAATCTA+AGG | + | tig0018287:17528-17547 | None:intergenic | 25.0% |
| !! | TGAATTTTGCTCACTAAAAT+TGG | - | tig0018287:17551-17570 | Msa1365430:intron | 25.0% |
| ! | TCACTAAAATTGGAAATTCA+AGG | - | tig0018287:17561-17580 | Msa1365430:intron | 25.0% |
| ! | CACTAAAATTGGAAATTCAA+GGG | - | tig0018287:17562-17581 | Msa1365430:intron | 25.0% |
| ! | TTTGAAGGAAAATAAAAGCA+GGG | + | tig0018287:17658-17677 | None:intergenic | 25.0% |
| ! | AATGAAAACTCATTCTTTGA+AGG | + | tig0018287:17673-17692 | None:intergenic | 25.0% |
| ! | ATACAACAGAAGAAAAGATT+AGG | - | tig0018287:17712-17731 | Msa1365430:intron | 25.0% |
| ! | CAATCATTAGAGAGAAAATT+AGG | - | tig0018287:17739-17758 | Msa1365430:intron | 25.0% |
| ! | CAATCATTAGAGAGAAAATT+AGG | - | tig0018287:17739-17758 | Msa1365430:intron | 25.0% |
| ! | TTCTCTCATTGTAGATAATT+AGG | - | tig0018287:17811-17830 | Msa1365430:intron | 25.0% |
| ! | GAGAAATCATGAAAAACTAA+AGG | - | tig0018287:17933-17952 | Msa1365430:CDS | 25.0% |
| ! | TCTTTGAATCAACACAATAA+AGG | - | tig0018287:17974-17993 | Msa1365430:CDS | 25.0% |
| ! | CTTTGAATCAACACAATAAA+GGG | - | tig0018287:17975-17994 | Msa1365430:CDS | 25.0% |
| !!! | AATATTTGCACTGCATTTTT+TGG | - | tig0018287:18031-18050 | Msa1365430:intron | 25.0% |
| !!! | ATATTTGCACTGCATTTTTT+GGG | - | tig0018287:18032-18051 | Msa1365430:intron | 25.0% |
| !!! | CATTTTTTGGGTTAAATGAT+GGG | - | tig0018287:18044-18063 | Msa1365430:intron | 25.0% |
| !! | ACTTACAGTTTTCTCAAATA+GGG | + | tig0018287:18234-18253 | None:intergenic | 25.0% |
| !! | AACTTACAGTTTTCTCAAAT+AGG | + | tig0018287:18235-18254 | None:intergenic | 25.0% |
| ! | TGCACTTAAACAAAAAACAA+AGG | + | tig0018287:18370-18389 | None:intergenic | 25.0% |
| ! | TATTTGTTCATGGTAACAAT+GGG | + | tig0018287:18693-18712 | None:intergenic | 25.0% |
| ! | ATATTTGTTCATGGTAACAA+TGG | + | tig0018287:18694-18713 | None:intergenic | 25.0% |
| !!! | ATTTATCAAGTGTTTTTGCA+AGG | - | tig0018287:18761-18780 | Msa1365430:CDS | 25.0% |
| ! | AATAAATCGACATGAATCAT+GGG | + | tig0018287:18827-18846 | None:intergenic | 25.0% |
| ! | TATTTCCACAATGATTTCAT+CGG | + | tig0018287:18988-19007 | None:intergenic | 25.0% |
| ! | GAAATCATTGTGGAAATAAA+AGG | - | tig0018287:18990-19009 | Msa1365430:intron | 25.0% |
| ! | TACTTTAATTATAGGGAAGT+AGG | - | tig0018287:19400-19419 | Msa1365430:intron | 25.0% |
| ! | AATACTTCTATAAACTTACC+CGG | - | tig0018287:19507-19526 | Msa1365430:intron | 25.0% |
| ! | ATATGTTTCCAAAAACCAAA+AGG | + | tig0018287:19589-19608 | None:intergenic | 25.0% |
| !! | AGAGAAAAAAAAAGCTCTAA+AGG | + | tig0018287:19673-19692 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTCTCTGATGGAT+TGG | - | tig0018287:19680-19699 | Msa1365430:intron | 25.0% |
| ! | AAATTGAATAAGTCTTACCT+TGG | + | tig0018287:19716-19735 | None:intergenic | 25.0% |
| ! | GAAAAAGAAAAATGGGTAAA+GGG | + | tig0018287:19899-19918 | None:intergenic | 25.0% |
| ! | AGAAAAAGAAAAATGGGTAA+AGG | + | tig0018287:19900-19919 | None:intergenic | 25.0% |
| ! | CTCTAAATAATAGTCGTTTA+AGG | + | tig0018287:20106-20125 | None:intergenic | 25.0% |
| ! | AAACGACTATTATTTAGAGA+CGG | - | tig0018287:20107-20126 | Msa1365430:CDS | 25.0% |
| !!! | AAATCATTTTGACATTTGAC+TGG | - | tig0018287:20305-20324 | Msa1365430:intron | 25.0% |
| !!! | AATCATTTTGACATTTGACT+GGG | - | tig0018287:20306-20325 | Msa1365430:intron | 25.0% |
| !!! | ATCAAGTACACTTTTGTTTA+TGG | - | tig0018287:20374-20393 | Msa1365430:intron | 25.0% |
| ! | TAGTACTTTCAGACTTTAAA+TGG | - | tig0018287:20564-20583 | Msa1365430:CDS | 25.0% |
| ATTATGTTCCATCCGTTTAT+TGG | - | tig0018287:16886-16905 | Msa1365430:intron | 30.0% | |
| !! | TTCCTGTATAGCTTTAATTG+AGG | + | tig0018287:16954-16973 | None:intergenic | 30.0% |
| AAAGCTATACAGGAAAATAC+AGG | - | tig0018287:16959-16978 | Msa1365430:intron | 30.0% | |
| !! | GTTGTTATTAGAGTTTTGTC+GGG | - | tig0018287:16983-17002 | Msa1365430:intron | 30.0% |
| !! | TGTTTGGTGTTTGACTTAAT+TGG | - | tig0018287:17117-17136 | Msa1365430:intron | 30.0% |
| TTGACTTAATTGGATTCATG+TGG | - | tig0018287:17127-17146 | Msa1365430:intron | 30.0% | |
| ATAAGCATGTCTAATCGTAA+TGG | + | tig0018287:17316-17335 | None:intergenic | 30.0% | |
| ATTTATAATTAGGGGAGAGA+GGG | + | tig0018287:17376-17395 | None:intergenic | 30.0% | |
| AATTTATAATTAGGGGAGAG+AGG | + | tig0018287:17377-17396 | None:intergenic | 30.0% | |
| !! | TTTGTTGTTCAAGTGAGAAA+GGG | + | tig0018287:17596-17615 | None:intergenic | 30.0% |
| ! | CTTTGAAGGAAAATAAAAGC+AGG | + | tig0018287:17659-17678 | None:intergenic | 30.0% |
| ATTAGGCATACAATCTTATG+CGG | - | tig0018287:17828-17847 | Msa1365430:intron | 30.0% | |
| GATTCAAAGACATTGTTTAC+TGG | + | tig0018287:17964-17983 | None:intergenic | 30.0% | |
| !!! | GCATTTTTTGGGTTAAATGA+TGG | - | tig0018287:18043-18062 | Msa1365430:intron | 30.0% |
| CAGTTCAATAATCCTTTCAT+CGG | + | tig0018287:18126-18145 | None:intergenic | 30.0% | |
| ! | CTTACAGTTTTCTCAAATAG+GGG | + | tig0018287:18233-18252 | None:intergenic | 30.0% |
| CAAGATTCTTCTTCTATTTC+TGG | - | tig0018287:18572-18591 | Msa1365430:intron | 30.0% | |
| ACGATTATTTGGTAAACTGA+TGG | + | tig0018287:18730-18749 | None:intergenic | 30.0% | |
| CAATAAATCGACATGAATCA+TGG | + | tig0018287:18828-18847 | None:intergenic | 30.0% | |
| ATTGTTTGTATCACCTGATA+GGG | + | tig0018287:18855-18874 | None:intergenic | 30.0% | |
| AGGACATAATTGGTATTCAA+GGG | - | tig0018287:18898-18917 | Msa1365430:intron | 30.0% | |
| ATTTCCACAATGATTTCATC+GGG | + | tig0018287:18987-19006 | None:intergenic | 30.0% | |
| !!! | TCTGGTCCTTTTACTTTTTT+TGG | - | tig0018287:19087-19106 | Msa1365430:intron | 30.0% |
| ACTAAATACATTTACGCCTA+CGG | + | tig0018287:19228-19247 | None:intergenic | 30.0% | |
| !! | TTTTGAGAAAACAAGGAACA+GGG | + | tig0018287:19280-19299 | None:intergenic | 30.0% |
| !! | TTTTTGAGAAAACAAGGAAC+AGG | + | tig0018287:19281-19300 | None:intergenic | 30.0% |
| AAATGAAGACAGTTTCTTCT+TGG | - | tig0018287:19430-19449 | Msa1365430:intron | 30.0% | |
| ACAGTTTCTTCTTGGTATAT+TGG | - | tig0018287:19438-19457 | Msa1365430:intron | 30.0% | |
| ATACTTCTATAAACTTACCC+GGG | - | tig0018287:19508-19527 | Msa1365430:intron | 30.0% | |
| !!! | AGAGCTTTTTTTTTCTCTGA+TGG | - | tig0018287:19675-19694 | Msa1365430:intron | 30.0% |
| ! | TCCACTGACTACAATTAATA+AGG | - | tig0018287:20005-20024 | Msa1365430:CDS | 30.0% |
| TCCTTATTAATTGTAGTCAG+TGG | + | tig0018287:20009-20028 | None:intergenic | 30.0% | |
| AGGCTTATGTACGATTATTA+AGG | + | tig0018287:20086-20105 | None:intergenic | 30.0% | |
| ATTAAAAAAACAGCCAGCAT+AGG | + | tig0018287:20198-20217 | None:intergenic | 30.0% | |
| AACATGAACTAATTCCTTGA+TGG | + | tig0018287:20341-20360 | None:intergenic | 30.0% | |
| GAATTGTCTTTCTTTGTTAC+AGG | - | tig0018287:20396-20415 | Msa1365430:intron | 30.0% | |
| AGCAATAGTTTCATTGTGAT+TGG | + | tig0018287:20431-20450 | None:intergenic | 30.0% | |
| TAGTTATGCTAGATTAGACA+CGG | - | tig0018287:20453-20472 | Msa1365430:intron | 30.0% | |
| GACTTTAAATGGTATCTTGA+AGG | - | tig0018287:20575-20594 | Msa1365430:CDS | 30.0% | |
| TTCGTAATGTATATGTGCAT+TGG | - | tig0018287:20783-20802 | Msa1365430:CDS | 30.0% | |
| !! | ATAGGGAAAAGTGTTTAGAG+AGG | + | tig0018287:16072-16091 | None:intergenic | 35.0% |
| ! | TCTCTAAACACTTTTCCCTA+TGG | - | tig0018287:16071-16090 | Msa1365430:three_prime_UTR | 35.0% |
| ATTGTTCCCGTTGTTAAAGT+TGG | - | tig0018287:16237-16256 | Msa1365430:three_prime_UTR | 35.0% | |
| ATGATGCCAACTTTAACAAC+GGG | + | tig0018287:16246-16265 | None:intergenic | 35.0% | |
| GATGATGCCAACTTTAACAA+CGG | + | tig0018287:16247-16266 | None:intergenic | 35.0% | |
| GTTAAAGTTGGCATCATCAT+AGG | - | tig0018287:16249-16268 | Msa1365430:three_prime_UTR | 35.0% | |
| TCTTGATCAATTCCCCTTTA+CGG | + | tig0018287:16275-16294 | None:intergenic | 35.0% | |
| CAAAATGAAACCGAAGAGTT+GGG | + | tig0018287:16466-16485 | None:intergenic | 35.0% | |
| ACAAAATGAAACCGAAGAGT+TGG | + | tig0018287:16467-16486 | None:intergenic | 35.0% | |
| ACGCAAGCTATCAATTTGAT+AGG | - | tig0018287:16917-16936 | Msa1365430:intron | 35.0% | |
| CTCCTCAATTAAAGCTATAC+AGG | - | tig0018287:16949-16968 | Msa1365430:intron | 35.0% | |
| TTGCTTTACCCAGTATGTAT+AGG | - | tig0018287:17186-17205 | Msa1365430:intron | 35.0% | |
| ACTCAAAACTCCATTTAGTG+AGG | + | tig0018287:17240-17259 | None:intergenic | 35.0% | |
| !!! | TCACTAAATGGAGTTTTGAG+TGG | - | tig0018287:17239-17258 | Msa1365430:intron | 35.0% |
| ACAAATTAGGCTCAAAAGAG+AGG | + | tig0018287:17412-17431 | None:intergenic | 35.0% | |
| !! | GTTTGTTGTTCAAGTGAGAA+AGG | + | tig0018287:17597-17616 | None:intergenic | 35.0% |
| AAGGAAAATAAAAGCAGGGA+CGG | + | tig0018287:17654-17673 | None:intergenic | 35.0% | |
| TTAGGGCACAAGAAAAGATT+AGG | - | tig0018287:17757-17776 | Msa1365430:intron | 35.0% | |
| CATACAATCTTATGCGGTTT+GGG | - | tig0018287:17834-17853 | Msa1365430:intron | 35.0% | |
| ! | GGCGGTTAGTTAATATTTAG+AGG | - | tig0018287:17906-17925 | Msa1365430:CDS | 35.0% |
| TGAAAGGATTATTGAACTGC+AGG | - | tig0018287:18127-18146 | Msa1365430:intron | 35.0% | |
| GAAAGGATTATTGAACTGCA+GGG | - | tig0018287:18128-18147 | Msa1365430:intron | 35.0% | |
| !! | CAAAGCTTTAAGAACCTTCA+AGG | + | tig0018287:18159-18178 | None:intergenic | 35.0% |
| CTTGAAGGTTCTTAAAGCTT+TGG | - | tig0018287:18157-18176 | Msa1365430:intron | 35.0% | |
| TATCAACCAGAAACTTTCTC+AGG | + | tig0018287:18199-18218 | None:intergenic | 35.0% | |
| AAAGAAAGAATCCCTCTTTG+TGG | + | tig0018287:18492-18511 | None:intergenic | 35.0% | |
| !! | TATTTCTGGTCTTCGTTCTT+CGG | - | tig0018287:18586-18605 | Msa1365430:intron | 35.0% |
| GTTGCTTACTGTAGTAACAA+TGG | + | tig0018287:18633-18652 | None:intergenic | 35.0% | |
| ! | GCACTGACACGATTAAAATT+GGG | + | tig0018287:18671-18690 | None:intergenic | 35.0% |
| ! | TGTTTTCGTTTTACTTCGTG+CGG | - | tig0018287:18788-18807 | Msa1365430:intron | 35.0% |
| GATTTATTGTTTCCCCTATC+AGG | - | tig0018287:18839-18858 | Msa1365430:intron | 35.0% | |
| TTGTTTGTATCACCTGATAG+GGG | + | tig0018287:18854-18873 | None:intergenic | 35.0% | |
| CATTGTTTGTATCACCTGAT+AGG | + | tig0018287:18856-18875 | None:intergenic | 35.0% | |
| GAGGACATAATTGGTATTCA+AGG | - | tig0018287:18897-18916 | Msa1365430:intron | 35.0% | |
| !! | TTGTTGTGCTGTTTGAACTT+GGG | + | tig0018287:19024-19043 | None:intergenic | 35.0% |
| !! | ATTGTTGTGCTGTTTGAACT+TGG | + | tig0018287:19025-19044 | None:intergenic | 35.0% |
| ! | AACAGCACAACAATTGATTC+AGG | - | tig0018287:19031-19050 | Msa1365430:intron | 35.0% |
| GTGAGTTATGCATATTGCAT+CGG | - | tig0018287:19118-19137 | Msa1365430:intron | 35.0% | |
| CAAGTGTTAAATGTAGACAC+AGG | - | tig0018287:19178-19197 | Msa1365430:intron | 35.0% | |
| ! | AGTCAAAACATGTGACCTTT+TGG | - | tig0018287:19571-19590 | Msa1365430:intron | 35.0% |
| !!! | ACATGTGACCTTTTGGTTTT+TGG | - | tig0018287:19578-19597 | Msa1365430:intron | 35.0% |
| ATGTACTCGTCCAAACATAA+TGG | + | tig0018287:19614-19633 | None:intergenic | 35.0% | |
| AGTTTATGCAGCTGTAGTAA+GGG | + | tig0018287:19647-19666 | None:intergenic | 35.0% | |
| TAGTTTATGCAGCTGTAGTA+AGG | + | tig0018287:19648-19667 | None:intergenic | 35.0% | |
| AAATGAATATGGCAAGAGCT+GGG | + | tig0018287:19782-19801 | None:intergenic | 35.0% | |
| AAGGGACAATTATTGTGAGA+GGG | + | tig0018287:19881-19900 | None:intergenic | 35.0% | |
| AAAGGGACAATTATTGTGAG+AGG | + | tig0018287:19882-19901 | None:intergenic | 35.0% | |
| GACTATTATTTAGAGACGGA+GGG | - | tig0018287:20111-20130 | Msa1365430:CDS | 35.0% | |
| GAGGAAGTGGGAATATAATA+AGG | + | tig0018287:20176-20195 | None:intergenic | 35.0% | |
| AGTTATGCTAGATTAGACAC+GGG | - | tig0018287:20454-20473 | Msa1365430:intron | 35.0% | |
| GAAACTGAACATCCTGAAAA+TGG | + | tig0018287:20766-20785 | None:intergenic | 35.0% | |
| ! | TTGGTTTGAACCTTAACCTT+AGG | - | tig0018287:20802-20821 | Msa1365430:exon | 35.0% |
| GTGATATTGACAACAGCTAT+TGG | + | tig0018287:20884-20903 | None:intergenic | 35.0% | |
| GTAACAGTGTAGAGACAACA+AGG | - | tig0018287:15999-16018 | Msa1365430:three_prime_UTR | 40.0% | |
| !! | AAAAGTGTTTAGAGAGGCGT+AGG | + | tig0018287:16066-16085 | None:intergenic | 40.0% |
| TAACAACGGGAACAATTAGC+CGG | + | tig0018287:16233-16252 | None:intergenic | 40.0% | |
| ATTTCACTTGCCCAACTCTT+CGG | - | tig0018287:16453-16472 | Msa1365430:CDS | 40.0% | |
| ATCTTTGCTTGTAGGTGTAG+TGG | - | tig0018287:16584-16603 | Msa1365430:intron | 40.0% | |
| TATATCGGGAAAAGAGGATC+TGG | - | tig0018287:16760-16779 | Msa1365430:intron | 40.0% | |
| CTAAGAATAGCATCCATTGC+AGG | + | tig0018287:16800-16819 | None:intergenic | 40.0% | |
| CTGCAATGGATGCTATTCTT+AGG | - | tig0018287:16798-16817 | Msa1365430:intron | 40.0% | |
| GTCATCAGTTTCGGATAATC+CGG | + | tig0018287:16840-16859 | None:intergenic | 40.0% | |
| ACAATAATACAGCAGCTGCA+GGG | - | tig0018287:16858-16877 | Msa1365430:intron | 40.0% | |
| ATGTTCCATCCGTTTATTGG+TGG | - | tig0018287:16889-16908 | Msa1365430:intron | 40.0% | |
| !! | GTTATTAGAGTTTTGTCGGG+AGG | - | tig0018287:16986-17005 | Msa1365430:intron | 40.0% |
| TCAAGAAGTAGAGGGAACTA+AGG | + | tig0018287:17023-17042 | None:intergenic | 40.0% | |
| GCTGCTAATCAAGAAGTAGA+GGG | + | tig0018287:17031-17050 | None:intergenic | 40.0% | |
| AGCTGCTAATCAAGAAGTAG+AGG | + | tig0018287:17032-17051 | None:intergenic | 40.0% | |
| TACATACTGGGTAAAGCAAC+AGG | + | tig0018287:17185-17204 | None:intergenic | 40.0% | |
| GCACTCAACCTATACATACT+GGG | + | tig0018287:17197-17216 | None:intergenic | 40.0% | |
| AGCACTCAACCTATACATAC+TGG | + | tig0018287:17198-17217 | None:intergenic | 40.0% | |
| AGGTTGAGTGCTTATGTATG+TGG | - | tig0018287:17206-17225 | Msa1365430:intron | 40.0% | |
| ! | GGATGTTTTGCCTCACTAAA+TGG | - | tig0018287:17227-17246 | Msa1365430:intron | 40.0% |
| GTCTAATCGTAATGGTAGGT+AGG | + | tig0018287:17308-17327 | None:intergenic | 40.0% | |
| GCATGTCTAATCGTAATGGT+AGG | + | tig0018287:17312-17331 | None:intergenic | 40.0% | |
| GCATACAATCTTATGCGGTT+TGG | - | tig0018287:17833-17852 | Msa1365430:intron | 40.0% | |
| ! | TTATGCGGTTTGGGTATGAT+TGG | - | tig0018287:17843-17862 | Msa1365430:intron | 40.0% |
| AAGTTCGTCTGTCAGGAAAA+TGG | + | tig0018287:18087-18106 | None:intergenic | 40.0% | |
| GACGAACTTCCATCTTATGT+CGG | - | tig0018287:18098-18117 | Msa1365430:intron | 40.0% | |
| ACATTCCTCTTTCCACAAAG+AGG | - | tig0018287:18477-18496 | Msa1365430:CDS | 40.0% | |
| CATTCCTCTTTCCACAAAGA+GGG | - | tig0018287:18478-18497 | Msa1365430:CDS | 40.0% | |
| TGCTGATCGTGAAAGTCAAT+TGG | - | tig0018287:18511-18530 | Msa1365430:intron | 40.0% | |
| TCCTCGACAATGTCATTGTA+TGG | - | tig0018287:18548-18567 | Msa1365430:intron | 40.0% | |
| TCCATACAATGACATTGTCG+AGG | + | tig0018287:18552-18571 | None:intergenic | 40.0% | |
| ! | TGTAGTAACAATGGAAGCAC+TGG | + | tig0018287:18624-18643 | None:intergenic | 40.0% |
| !! | GGCACTGACACGATTAAAAT+TGG | + | tig0018287:18672-18691 | None:intergenic | 40.0% |
| AATACCATTGTCCTATGCAG+AGG | - | tig0018287:18878-18897 | Msa1365430:intron | 40.0% | |
| TCCTATGCAGAGGACATAAT+TGG | - | tig0018287:18888-18907 | Msa1365430:intron | 40.0% | |
| ACCAATTATGTCCTCTGCAT+AGG | + | tig0018287:18892-18911 | None:intergenic | 40.0% | |
| TCTTGGTATATTGGTGAGAG+TGG | - | tig0018287:19447-19466 | Msa1365430:intron | 40.0% | |
| CTTGGTATATTGGTGAGAGT+GGG | - | tig0018287:19448-19467 | Msa1365430:intron | 40.0% | |
| ATGTCCACTTAACAATGTCC+CGG | + | tig0018287:19534-19553 | None:intergenic | 40.0% | |
| !! | TTTCTCTGATGGATTGGACT+AGG | - | tig0018287:19686-19705 | Msa1365430:intron | 40.0% |
| GAAATGAATATGGCAAGAGC+TGG | + | tig0018287:19783-19802 | None:intergenic | 40.0% | |
| GACAATTATTGTGAGAGGGA+GGG | + | tig0018287:19877-19896 | None:intergenic | 40.0% | |
| CGACTATTATTTAGAGACGG+AGG | - | tig0018287:20110-20129 | Msa1365430:CDS | 40.0% | |
| AAAAAAACAGCCAGCATAGG+AGG | + | tig0018287:20195-20214 | None:intergenic | 40.0% | |
| GTTATGCTAGATTAGACACG+GGG | - | tig0018287:20455-20474 | Msa1365430:intron | 40.0% | |
| AGGTCTTCTTACTCTCAACT+GGG | - | tig0018287:20481-20500 | Msa1365430:intron | 40.0% | |
| !! | ATTGTAGGGTTGTGATGGAT+AGG | + | tig0018287:20515-20534 | None:intergenic | 40.0% |
| TATCCATCACAACCCTACAA+TGG | - | tig0018287:20514-20533 | Msa1365430:intron | 40.0% | |
| ATCCATCACAACCCTACAAT+GGG | - | tig0018287:20515-20534 | Msa1365430:intron | 40.0% | |
| !! | CTGAAAGTACTATAATCCCC+AGG | + | tig0018287:20556-20575 | None:intergenic | 40.0% |
| CTTGAAGGAACATCATCTTG+AGG | - | tig0018287:20590-20609 | Msa1365430:CDS | 40.0% | |
| CACTGTAGATCCTAAGGTTA+AGG | + | tig0018287:20815-20834 | None:intergenic | 40.0% | |
| CTTAACCTTAGGATCTACAG+TGG | - | tig0018287:20813-20832 | Msa1365430:five_prime_UTR | 40.0% | |
| ! | AACACTTTTCCCTATGGCCA+CGG | - | tig0018287:16077-16096 | Msa1365430:three_prime_UTR | 45.0% |
| CTGAATCTGCAGAGAAGAGA+TGG | - | tig0018287:16181-16200 | Msa1365430:three_prime_UTR | 45.0% | |
| GCATCATCATAGGCCGTAAA+GGG | - | tig0018287:16259-16278 | Msa1365430:three_prime_UTR | 45.0% | |
| CATCATCATAGGCCGTAAAG+GGG | - | tig0018287:16260-16279 | Msa1365430:three_prime_UTR | 45.0% | |
| ! | AGGTGTAGTGGAGTCTCTAT+AGG | - | tig0018287:16596-16615 | Msa1365430:intron | 45.0% |
| GGTGCTTATATCGGGAAAAG+AGG | - | tig0018287:16754-16773 | Msa1365430:intron | 45.0% | |
| GACAATAATACAGCAGCTGC+AGG | - | tig0018287:16857-16876 | Msa1365430:intron | 45.0% | |
| CAATAATACAGCAGCTGCAG+GGG | - | tig0018287:16859-16878 | Msa1365430:intron | 45.0% | |
| ! | TAGTGATGGGGGTTGACTAA+TGG | - | tig0018287:17885-17904 | Msa1365430:CDS | 45.0% |
| AAGATGGAAGTTCGTCTGTC+AGG | + | tig0018287:18094-18113 | None:intergenic | 45.0% | |
| !! | AAAGCTTTGGAAGCCGTAGT+CGG | - | tig0018287:18170-18189 | Msa1365430:intron | 45.0% |
| ! | TGCGAAGCACTATGTAGTGA+TGG | + | tig0018287:18440-18459 | None:intergenic | 45.0% |
| GGAATGTCAGCAACAATGCT+AGG | + | tig0018287:18464-18483 | None:intergenic | 45.0% | |
| GAATCCCTCTTTGTGGAAAG+AGG | + | tig0018287:18485-18504 | None:intergenic | 45.0% | |
| ATGTCCTCTGCATAGGACAA+TGG | + | tig0018287:18885-18904 | None:intergenic | 45.0% | |
| ACTACATTCGTCGCACTAGT+GGG | - | tig0018287:18931-18950 | Msa1365430:intron | 45.0% | |
| !! | TTGTGCTGTTTGAACTTGGG+TGG | + | tig0018287:19021-19040 | None:intergenic | 45.0% |
| CATCGGCATATGTGCATGTT+TGG | - | tig0018287:19135-19154 | Msa1365430:intron | 45.0% | |
| TTCTATAAACTTACCCGGGC+CGG | - | tig0018287:19512-19531 | Msa1365430:intron | 45.0% | |
| !! | GGATTGGACTAGGTTTTCCA+AGG | - | tig0018287:19696-19715 | Msa1365430:intron | 45.0% |
| GGACAATTATTGTGAGAGGG+AGG | + | tig0018287:19878-19897 | None:intergenic | 45.0% | |
| CTGGGTACTTACTACCATCA+AGG | - | tig0018287:20324-20343 | Msa1365430:intron | 45.0% | |
| GAGGTCTTCTTACTCTCAAC+TGG | - | tig0018287:20480-20499 | Msa1365430:intron | 45.0% | |
| TACCCATTGTAGGGTTGTGA+TGG | + | tig0018287:20520-20539 | None:intergenic | 45.0% | |
| TCACAACCCTACAATGGGTA+CGG | - | tig0018287:20520-20539 | Msa1365430:intron | 45.0% | |
| GAAGATCCGTACCCATTGTA+GGG | + | tig0018287:20529-20548 | None:intergenic | 45.0% | |
| AGAAGATCCGTACCCATTGT+AGG | + | tig0018287:20530-20549 | None:intergenic | 45.0% | |
| TACAATGGGTACGGATCTTC+TGG | - | tig0018287:20529-20548 | Msa1365430:intron | 45.0% | |
| CAAAGCCACTGTAGATCCTA+AGG | + | tig0018287:20821-20840 | None:intergenic | 45.0% | |
| GCGGTAGAGCCAATTCCAAA+CGG | - | tig0018287:16099-16118 | Msa1365430:three_prime_UTR | 50.0% | |
| !! | TGGAGAGTGCCGTTTGGAAT+TGG | + | tig0018287:16111-16130 | None:intergenic | 50.0% |
| !! | TCTGATTGGAGAGTGCCGTT+TGG | + | tig0018287:16117-16136 | None:intergenic | 50.0% |
| TTCGTCCGTAGGATTTGCAG+CGG | + | tig0018287:16160-16179 | None:intergenic | 50.0% | |
| GCAGATTCAGATTCGTCCGT+AGG | + | tig0018287:16171-16190 | None:intergenic | 50.0% | |
| GGCATCATCATAGGCCGTAA+AGG | - | tig0018287:16258-16277 | Msa1365430:three_prime_UTR | 50.0% | |
| ATCGGGAAAAGAGGATCTGG+AGG | - | tig0018287:16763-16782 | Msa1365430:intron | 50.0% | |
| TGACGCCACCAATAAACGGA+TGG | + | tig0018287:16897-16916 | None:intergenic | 50.0% | |
| ! | GCGTTGACGCCACCAATAAA+CGG | + | tig0018287:16901-16920 | None:intergenic | 50.0% |
| !! | GTTTTGTCGGGAGGTATGCT+TGG | - | tig0018287:16995-17014 | Msa1365430:intron | 50.0% |
| TGATGGGGGTTGACTAATGG+CGG | - | tig0018287:17888-17907 | Msa1365430:CDS | 50.0% | |
| !! | TCATCGGCACCGACATAAGA+TGG | + | tig0018287:18110-18129 | None:intergenic | 50.0% |
| !! | CTTATGTCGGTGCCGATGAA+AGG | - | tig0018287:18111-18130 | Msa1365430:intron | 50.0% |
| ACTGCAGGGAGAAACCTTGA+AGG | - | tig0018287:18142-18161 | Msa1365430:intron | 50.0% | |
| !! | AAGCTTTGGAAGCCGTAGTC+GGG | - | tig0018287:18171-18190 | Msa1365430:intron | 50.0% |
| ! | TAGTGATGGTTTGTCAGCCC+AGG | + | tig0018287:18426-18445 | None:intergenic | 50.0% |
| GACTACATTCGTCGCACTAG+TGG | - | tig0018287:18930-18949 | Msa1365430:intron | 50.0% | |
| CTACATTCGTCGCACTAGTG+GGG | - | tig0018287:18932-18951 | Msa1365430:intron | 50.0% | |
| ! | TGGGGCTATATTGACTGTGC+AGG | - | tig0018287:18950-18969 | Msa1365430:intron | 50.0% |
| ! | TATTGACTGTGCAGGAGAGC+AGG | - | tig0018287:18958-18977 | Msa1365430:intron | 50.0% |
| ATTGACTGTGCAGGAGAGCA+GGG | - | tig0018287:18959-18978 | Msa1365430:intron | 50.0% | |
| GGTGCCCGATGAAATCATTG+TGG | - | tig0018287:18980-18999 | Msa1365430:intron | 50.0% | |
| ! | TGCTGTTTGAACTTGGGTGG+AGG | + | tig0018287:19018-19037 | None:intergenic | 50.0% |
| CTCACATTGCTCGTTTCCGT+AGG | - | tig0018287:19209-19228 | Msa1365430:intron | 50.0% | |
| TGAGAGTGGGAGTCAGACAA+AGG | - | tig0018287:19461-19480 | Msa1365430:intron | 50.0% | |
| TCTATAAACTTACCCGGGCC+GGG | - | tig0018287:19513-19532 | Msa1365430:intron | 50.0% | |
| ATTCCCACTTCCTCCTATGC+TGG | - | tig0018287:20182-20201 | Msa1365430:intron | 50.0% | |
| CATTCCAATCAGACCCAGCT+GGG | + | tig0018287:20624-20643 | None:intergenic | 50.0% | |
| ACATTCCAATCAGACCCAGC+TGG | + | tig0018287:20625-20644 | None:intergenic | 50.0% | |
| ! | ACTTTTCCCTATGGCCACGG+CGG | - | tig0018287:16080-16099 | Msa1365430:three_prime_UTR | 55.0% |
| TGACGCCGCTGCAAATCCTA+CGG | - | tig0018287:16152-16171 | Msa1365430:three_prime_UTR | 55.0% | |
| TCTGCAGAGAAGAGATGGCC+AGG | - | tig0018287:16186-16205 | Msa1365430:three_prime_UTR | 55.0% | |
| CAGAGAAGAGATGGCCAGGT+TGG | - | tig0018287:16190-16209 | Msa1365430:three_prime_UTR | 55.0% | |
| CGTGTTCTTGACGCTGCAGT+TGG | - | tig0018287:16324-16343 | Msa1365430:CDS | 55.0% | |
| GCATCCATTGCAGGAGAGAG+CGG | + | tig0018287:16791-16810 | None:intergenic | 55.0% | |
| ACCCGTAGCAGCACTAGTGA+TGG | - | tig0018287:17871-17890 | Msa1365430:CDS | 55.0% | |
| ! | CCCATCACTAGTGCTGCTAC+GGG | + | tig0018287:17875-17894 | None:intergenic | 55.0% |
| CCCGTAGCAGCACTAGTGAT+GGG | - | tig0018287:17872-17891 | Msa1365430:CDS | 55.0% | |
| ! | CCCCATCACTAGTGCTGCTA+CGG | + | tig0018287:17876-17895 | None:intergenic | 55.0% |
| CCGTAGCAGCACTAGTGATG+GGG | - | tig0018287:17873-17892 | Msa1365430:CDS | 55.0% | |
| CGTAGCAGCACTAGTGATGG+GGG | - | tig0018287:17874-17893 | Msa1365430:CDS | 55.0% | |
| CTTTCTCAGGTGCCCGACTA+CGG | + | tig0018287:18186-18205 | None:intergenic | 55.0% | |
| CGGGCACCTGAGAAAGTTTC+TGG | - | tig0018287:18190-18209 | Msa1365430:intron | 55.0% | |
| GGCATCTGTCTGACGGTCTT+GGG | + | tig0018287:18405-18424 | None:intergenic | 55.0% | |
| AGGCATCTGTCTGACGGTCT+TGG | + | tig0018287:18406-18425 | None:intergenic | 55.0% | |
| AAGACCGTCAGACAGATGCC+TGG | - | tig0018287:18405-18424 | Msa1365430:CDS | 55.0% | |
| AGACCGTCAGACAGATGCCT+GGG | - | tig0018287:18406-18425 | Msa1365430:CDS | 55.0% | |
| ACTTAACAATGTCCCGGCCC+GGG | + | tig0018287:19528-19547 | None:intergenic | 55.0% | |
| CACTTAACAATGTCCCGGCC+CGG | + | tig0018287:19529-19548 | None:intergenic | 55.0% | |
| CAGCCAGCATAGGAGGAAGT+GGG | + | tig0018287:20188-20207 | None:intergenic | 55.0% | |
| ACAGCCAGCATAGGAGGAAG+TGG | + | tig0018287:20189-20208 | None:intergenic | 55.0% | |
| CTAGATTAGACACGGGGCTG+AGG | - | tig0018287:20461-20480 | Msa1365430:intron | 55.0% | |
| GGTACGGATCTTCTGGTCCT+GGG | - | tig0018287:20536-20555 | Msa1365430:CDS | 55.0% | |
| GTACGGATCTTCTGGTCCTG+GGG | - | tig0018287:20537-20556 | Msa1365430:CDS | 55.0% | |
| TTGAGGCAAGTTGTCCCAGC+TGG | - | tig0018287:20607-20626 | Msa1365430:CDS | 55.0% | |
| TGAGGCAAGTTGTCCCAGCT+GGG | - | tig0018287:20608-20627 | Msa1365430:CDS | 55.0% | |
| TTGTCCCAGCTGGGTCTGAT+TGG | - | tig0018287:20617-20636 | Msa1365430:CDS | 55.0% | |
| !! | TGGAATTGGCTCTACCGCCG+TGG | + | tig0018287:16097-16116 | None:intergenic | 60.0% |
| ! | AAGAGATGGCCAGGTTGGCC+TGG | - | tig0018287:16195-16214 | Msa1365430:three_prime_UTR | 60.0% |
| ! | GGCCTGGTCACTGCGTTTTC+CGG | - | tig0018287:16211-16230 | Msa1365430:three_prime_UTR | 60.0% |
| AGCCGGAAAACGCAGTGACC+AGG | + | tig0018287:16216-16235 | None:intergenic | 60.0% | |
| CAGCCCAGGCATCTGTCTGA+CGG | + | tig0018287:18412-18431 | None:intergenic | 60.0% | |
| CGGGCCGGGACATTGTTAAG+TGG | - | tig0018287:19527-19546 | Msa1365430:intron | 60.0% | |
| GGGTACGGATCTTCTGGTCC+TGG | - | tig0018287:20535-20554 | Msa1365430:CDS | 60.0% | |
| GCTCTACCGCCGTGGCCATA+GGG | + | tig0018287:16089-16108 | None:intergenic | 65.0% | |
| ACGCAGTGACCAGGCCAACC+TGG | + | tig0018287:16207-16226 | None:intergenic | 65.0% | |
| GGCACCGCTCTCTCCTGCAA+TGG | - | tig0018287:16784-16803 | Msa1365430:intron | 65.0% | |
| GGCTCTACCGCCGTGGCCAT+AGG | + | tig0018287:16090-16109 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018287 | gene | 15978 | 20919 | 15978 | ID=Msa1365430;Name=Msa1365430 |
| tig0018287 | mRNA | 15978 | 20919 | 15978 | ID=Msa1365430-mRNA-1;Parent=Msa1365430;Name=Msa1365430-mRNA-1;_AED=0.04;_eAED=0.04;_QI=112|1|1|1|1|1|6|337|429 |
| tig0018287 | exon | 15978 | 16479 | 15978 | ID=Msa1365430-mRNA-1:exon:14556;Parent=Msa1365430-mRNA-1 |
| tig0018287 | exon | 17845 | 18036 | 17845 | ID=Msa1365430-mRNA-1:exon:14555;Parent=Msa1365430-mRNA-1 |
| tig0018287 | exon | 18254 | 18511 | 18254 | ID=Msa1365430-mRNA-1:exon:14554;Parent=Msa1365430-mRNA-1 |
| tig0018287 | exon | 18650 | 18798 | 18650 | ID=Msa1365430-mRNA-1:exon:14553;Parent=Msa1365430-mRNA-1 |
| tig0018287 | exon | 19890 | 20142 | 19890 | ID=Msa1365430-mRNA-1:exon:14552;Parent=Msa1365430-mRNA-1 |
| tig0018287 | exon | 20535 | 20919 | 20535 | ID=Msa1365430-mRNA-1:exon:14551;Parent=Msa1365430-mRNA-1 |
| tig0018287 | five_prime_UTR | 20808 | 20919 | 20808 | ID=Msa1365430-mRNA-1:five_prime_utr;Parent=Msa1365430-mRNA-1 |
| tig0018287 | CDS | 20535 | 20807 | 20535 | ID=Msa1365430-mRNA-1:cds;Parent=Msa1365430-mRNA-1 |
| tig0018287 | CDS | 19890 | 20142 | 19890 | ID=Msa1365430-mRNA-1:cds;Parent=Msa1365430-mRNA-1 |
| tig0018287 | CDS | 18650 | 18798 | 18650 | ID=Msa1365430-mRNA-1:cds;Parent=Msa1365430-mRNA-1 |
| tig0018287 | CDS | 18254 | 18511 | 18254 | ID=Msa1365430-mRNA-1:cds;Parent=Msa1365430-mRNA-1 |
| tig0018287 | CDS | 17845 | 18036 | 17845 | ID=Msa1365430-mRNA-1:cds;Parent=Msa1365430-mRNA-1 |
| tig0018287 | CDS | 16315 | 16479 | 16315 | ID=Msa1365430-mRNA-1:cds;Parent=Msa1365430-mRNA-1 |
| tig0018287 | three_prime_UTR | 15978 | 16314 | 15978 | ID=Msa1365430-mRNA-1:three_prime_utr;Parent=Msa1365430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
