AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0659020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659020 MtrunA17_Chr8g0383271 94.706 170 8 1 3 171 1 170 4.78e-105 298
Msa0659020 MtrunA17_Chr1g0178671 36.134 119 73 2 57 175 8 123 1.19e-21 85.5
Msa0659020 MtrunA17_Chr7g0266291 34.711 121 73 4 58 175 39 156 1.11e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659020 AT1G10500.1 64.835 182 52 3 7 179 2 180 2.30e-76 226
Msa0659020 AT2G16710.1 37.719 114 63 3 67 175 14 124 1.32e-21 85.9
Msa0659020 AT2G16710.3 35.593 118 66 3 67 175 14 130 3.94e-21 84.7
Msa0659020 AT2G36260.1 33.962 106 66 3 70 175 5 106 1.20e-17 74.7
Msa0659020 AT5G03905.1 34.234 111 70 2 70 179 50 158 3.46e-17 75.1
Msa0659020 AT2G16710.2 35.366 82 50 2 70 151 22 100 7.61e-13 62.4

Find 56 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGTTGATACATCGATTA+TGG 0.182656 4_3:-69260276 Msa0659020:three_prime_UTR
CTCTGTTGATACATCGATTA+TGG 0.182656 4_3:-69260316 Msa0659020:three_prime_UTR
AAGAGCCTACTCTTCGTATT+TGG 0.197827 4_3:-69260694 Msa0659020:CDS
GATCGAATTGAGAGAGGTTT+AGG 0.272109 4_3:+69262218 None:intergenic
CAATACTTCGGAGTAATTAT+AGG 0.301592 4_3:-69260514 Msa0659020:three_prime_UTR
CCACAGGTTTGTGTCGCATT+AGG 0.312594 4_3:+69260616 None:intergenic
CAAGATTTGTGTTTAAGAAT+TGG 0.321991 4_3:-69261548 Msa0659020:CDS
GATTGGAACGCGAACGAATT+GGG 0.333118 4_3:+69262298 None:intergenic
CCACAGCAAACAAACAGATA+TGG 0.339633 4_3:+69260428 None:intergenic
AATACGAAGAGTAGGCTCTT+AGG 0.361492 4_3:+69260697 None:intergenic
GAACAATATAATATAAATAC+TGG 0.367518 4_3:-69260371 Msa0659020:three_prime_UTR
TGATTGGAACGCGAACGAAT+TGG 0.382823 4_3:+69262297 None:intergenic
GGTGCCACGGCCCCAGATGC+AGG 0.406436 4_3:+69261632 None:intergenic
ATCGAATTGAGAGAGGTTTA+GGG 0.409502 4_3:+69262219 None:intergenic
GAGAGAGAGCTATGAGTGAT+TGG 0.409580 4_3:+69262281 None:intergenic
TGCACCTGCATCTGGGGCCG+TGG 0.436538 4_3:-69261636 Msa0659020:CDS
AAAACCTTTGTATTCAATGA+TGG 0.441255 4_3:+69261448 None:intergenic
CTAAAGCGGCGATTGAGAAT+TGG 0.446890 4_3:+69262242 None:intergenic
GACTACAGTGATGCTCTGAT+TGG 0.458599 4_3:-69260661 Msa0659020:CDS
GTCAAACAAGGTGGGTGCTC+TGG 0.472114 4_3:-69261524 Msa0659020:CDS
CACAGCAAACAAACAGATAT+GGG 0.474400 4_3:+69260429 None:intergenic
CCATATCTGTTTGTTTGCTG+TGG 0.480157 4_3:-69260428 Msa0659020:three_prime_UTR
CGATGTATCAACAGAGAAAG+TGG 0.485454 4_3:+69260283 None:intergenic
CGATGTATCAACAGAGAAAG+TGG 0.485454 4_3:+69260323 None:intergenic
TTATCTGTAAGCGAAATTGC+AGG 0.509358 4_3:+69261611 None:intergenic
GGGCTTACCGGCAGCAATAA+CGG 0.512066 4_3:+69262190 None:intergenic
ATTGGAACGCGAACGAATTG+GGG 0.513543 4_3:+69262299 None:intergenic
AAATGATTTACCACATCCAC+AGG 0.517325 4_3:+69260600 None:intergenic
AAATCAAACATGGCCATGGC+TGG 0.519320 4_3:-69262362 Msa0659020:exon
AGACAATAGTTACAATACTA+AGG 0.522902 4_3:-69260550 Msa0659020:three_prime_UTR
TATTCAATGATGGAGTCGTC+TGG 0.526703 4_3:+69261458 None:intergenic
TACAGTGATGCTCTGATTGG+AGG 0.527694 4_3:-69260658 Msa0659020:CDS
ACAATAAACTGATGCACCAC+AGG 0.539750 4_3:+69260405 None:intergenic
TCACTTTCCGTTATTGCTGC+CGG 0.540114 4_3:-69262197 Msa0659020:intron
TGTTTGTTTGCTGTGGCCTG+TGG 0.558121 4_3:-69260421 Msa0659020:three_prime_UTR
TTTAGCTGCACCTGCATCTG+GGG 0.577576 4_3:-69261642 Msa0659020:intron
GCGACACAAACCTGTGGATG+TGG 0.581388 4_3:-69260610 Msa0659020:CDS
TTAAGAATTGGTGTCAAACA+AGG 0.584994 4_3:-69261536 Msa0659020:CDS
AAGCGAAATTGCAGGTGCCA+CGG 0.587731 4_3:+69261619 None:intergenic
AGAATTGGTGTCAAACAAGG+TGG 0.587930 4_3:-69261533 Msa0659020:CDS
AGTGATGCTCTGATTGGAGG+AGG 0.589985 4_3:-69260655 Msa0659020:CDS
TTGAGGACAGGGCTAATGCA+AGG 0.598318 4_3:-69261481 Msa0659020:CDS
CAATTACTACTACCGCGCAC+TGG 0.599076 4_3:-69262325 Msa0659020:CDS
AGAGAGGTTTAGGGCTAAAG+CGG 0.601518 4_3:+69262228 None:intergenic
GCATTCCAAATACGAAGAGT+AGG 0.603532 4_3:+69260689 None:intergenic
ACACAAATCAAACATGGCCA+TGG 0.605803 4_3:-69262366 Msa0659020:exon
AGAGAAAGCAGCACCAGCCA+TGG 0.608264 4_3:+69262349 None:intergenic
CTCTGGTATGTCATACACAA+TGG 0.609613 4_3:-69261507 Msa0659020:CDS
TTCTCTACACAAATCAAACA+TGG 0.615705 4_3:-69262372 Msa0659020:exon
GAATGTTTGAAGCAATACTT+CGG 0.618101 4_3:-69260526 Msa0659020:three_prime_UTR
GAAAGTGATCGAATTGAGAG+AGG 0.627615 4_3:+69262212 None:intergenic
TCAATCACTTGAATAAGATG+AGG 0.638619 4_3:-69261583 Msa0659020:CDS
GAATTGGTGTCAAACAAGGT+GGG 0.648767 4_3:-69261532 Msa0659020:CDS
GACTCCATCATTGAATACAA+AGG 0.682577 4_3:-69261452 Msa0659020:CDS
CCTAATGCGACACAAACCTG+TGG 0.690717 4_3:-69260616 Msa0659020:CDS
GAATTGGGGAGACCAGTGCG+CGG 0.788727 4_3:+69262313 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAAATAGAAGAATAT+GGG + chr4_3:69260543-69260562 None:intergenic 10.0%
!! ATTAATAAATAGAAGAATAT+GGG + chr4_3:69260543-69260562 None:intergenic 10.0%
!! TTAATAAATAGAAGAATATG+GGG + chr4_3:69260542-69260561 None:intergenic 15.0%
!! GATTAATAAATAGAAGAATA+TGG + chr4_3:69260544-69260563 None:intergenic 15.0%
!! ATGTATGAGTTTAAAAAAAA+TGG - chr4_3:69260922-69260941 Msa0659020:intron 15.0%
!! TGTATGAGTTTAAAAAAAAT+GGG - chr4_3:69260923-69260942 Msa0659020:intron 15.0%
!!! ATATTTTGCTTGTTTTTATT+TGG - chr4_3:69261500-69261519 Msa0659020:CDS 15.0%
!!! TATTTTGCTTGTTTTTATTT+GGG - chr4_3:69261501-69261520 Msa0659020:CDS 15.0%
!!! TTTTATTACAATCACATTAT+AGG - chr4_3:69262219-69262238 Msa0659020:CDS 15.0%
!! GAACAATATAATATAAATAC+TGG - chr4_3:69262338-69262357 Msa0659020:CDS 15.0%
!! TTAATAAATAGAAGAATATG+GGG + chr4_3:69260542-69260561 None:intergenic 15.0%
!! GATTAATAAATAGAAGAATA+TGG + chr4_3:69260544-69260563 None:intergenic 15.0%
!! ATGTATGAGTTTAAAAAAAA+TGG - chr4_3:69260922-69260941 Msa0659020:intron 15.0%
!! TGTATGAGTTTAAAAAAAAT+GGG - chr4_3:69260923-69260942 Msa0659020:intron 15.0%
!!! ATATTTTGCTTGTTTTTATT+TGG - chr4_3:69261500-69261519 Msa0659020:CDS 15.0%
!!! TATTTTGCTTGTTTTTATTT+GGG - chr4_3:69261501-69261520 Msa0659020:CDS 15.0%
!!! TTTTATTACAATCACATTAT+AGG - chr4_3:69262219-69262238 Msa0659020:CDS 15.0%
!! GAACAATATAATATAAATAC+TGG - chr4_3:69262338-69262357 Msa0659020:CDS 15.0%
!! CAAAATACTCCTATTAATTA+GGG + chr4_3:69260713-69260732 None:intergenic 20.0%
!! TCAAAATACTCCTATTAATT+AGG + chr4_3:69260714-69260733 None:intergenic 20.0%
!! AGGAAATAACAAAACATAAA+TGG + chr4_3:69260749-69260768 None:intergenic 20.0%
!! ATCAAATAATTTAATCACCT+TGG + chr4_3:69261347-69261366 None:intergenic 20.0%
!! CAATATCTTCAAATGAATAT+GGG - chr4_3:69261383-69261402 Msa0659020:intron 20.0%
!!! AGTTTGATAACATTTATACT+TGG + chr4_3:69261541-69261560 None:intergenic 20.0%
!! CAAAATACTCCTATTAATTA+GGG + chr4_3:69260713-69260732 None:intergenic 20.0%
!! TCAAAATACTCCTATTAATT+AGG + chr4_3:69260714-69260733 None:intergenic 20.0%
!! AGGAAATAACAAAACATAAA+TGG + chr4_3:69260749-69260768 None:intergenic 20.0%
!! ATCAAATAATTTAATCACCT+TGG + chr4_3:69261347-69261366 None:intergenic 20.0%
!! CAATATCTTCAAATGAATAT+GGG - chr4_3:69261383-69261402 Msa0659020:intron 20.0%
!!! AGTTTGATAACATTTATACT+TGG + chr4_3:69261541-69261560 None:intergenic 20.0%
! ATCATCATCATCATCAAATT+GGG - chr4_3:69260271-69260290 Msa0659020:three_prime_UTR 25.0%
! ATTACGACAATTTCATGAAT+TGG + chr4_3:69260603-69260622 None:intergenic 25.0%
!!! AGGAGTATTTTGAAAGATTA+AGG - chr4_3:69260721-69260740 Msa0659020:intron 25.0%
!! TTTTAAACTCATACATAGCA+TGG + chr4_3:69260918-69260937 None:intergenic 25.0%
! GCAAATGTTGAATAAATACA+TGG + chr4_3:69261034-69261053 None:intergenic 25.0%
! CAAGATTTGTGTTTAAGAAT+TGG - chr4_3:69261161-69261180 Msa0659020:intron 25.0%
! AAAACCTTTGTATTCAATGA+TGG + chr4_3:69261264-69261283 None:intergenic 25.0%
! CCATATTCATTTGAAGATAT+TGG + chr4_3:69261385-69261404 None:intergenic 25.0%
! CCAATATCTTCAAATGAATA+TGG - chr4_3:69261382-69261401 Msa0659020:intron 25.0%
!! ATTAAGATTTTCATCGATAC+TGG + chr4_3:69261411-69261430 None:intergenic 25.0%
! CAATGATAATAAAAACTGAG+TGG - chr4_3:69261568-69261587 Msa0659020:CDS 25.0%
!!! CTTTTTAAGCTTTTGTTTAC+TGG - chr4_3:69261828-69261847 Msa0659020:intron 25.0%
!!! GCAGTTCAAACTTTTTTTTA+TGG - chr4_3:69261877-69261896 Msa0659020:intron 25.0%
!! CTTTTAGTAGTAATTAAGCT+TGG - chr4_3:69261914-69261933 Msa0659020:intron 25.0%
! AGACAATAGTTACAATACTA+AGG - chr4_3:69262159-69262178 Msa0659020:intron 25.0%
! ATCATCATCATCATCAAATT+GGG - chr4_3:69260271-69260290 Msa0659020:three_prime_UTR 25.0%
! ATTACGACAATTTCATGAAT+TGG + chr4_3:69260603-69260622 None:intergenic 25.0%
!!! AGGAGTATTTTGAAAGATTA+AGG - chr4_3:69260721-69260740 Msa0659020:intron 25.0%
!! TTTTAAACTCATACATAGCA+TGG + chr4_3:69260918-69260937 None:intergenic 25.0%
! GCAAATGTTGAATAAATACA+TGG + chr4_3:69261034-69261053 None:intergenic 25.0%
! CAAGATTTGTGTTTAAGAAT+TGG - chr4_3:69261161-69261180 Msa0659020:intron 25.0%
! AAAACCTTTGTATTCAATGA+TGG + chr4_3:69261264-69261283 None:intergenic 25.0%
! CCATATTCATTTGAAGATAT+TGG + chr4_3:69261385-69261404 None:intergenic 25.0%
! CCAATATCTTCAAATGAATA+TGG - chr4_3:69261382-69261401 Msa0659020:intron 25.0%
!! ATTAAGATTTTCATCGATAC+TGG + chr4_3:69261411-69261430 None:intergenic 25.0%
! CAATGATAATAAAAACTGAG+TGG - chr4_3:69261568-69261587 Msa0659020:CDS 25.0%
!!! CTTTTTAAGCTTTTGTTTAC+TGG - chr4_3:69261828-69261847 Msa0659020:intron 25.0%
!!! GCAGTTCAAACTTTTTTTTA+TGG - chr4_3:69261877-69261896 Msa0659020:intron 25.0%
!! CTTTTAGTAGTAATTAAGCT+TGG - chr4_3:69261914-69261933 Msa0659020:intron 25.0%
! AGACAATAGTTACAATACTA+AGG - chr4_3:69262159-69262178 Msa0659020:intron 25.0%
GGGACAAAACAAAAACATAT+TGG - chr4_3:69260291-69260310 Msa0659020:three_prime_UTR 30.0%
TTCTCTACACAAATCAAACA+TGG - chr4_3:69260337-69260356 Msa0659020:three_prime_UTR 30.0%
ATACTCCTATTAATTAGGGT+AGG + chr4_3:69260709-69260728 None:intergenic 30.0%
!! TTGTTATTTCCTATGAACCA+CGG - chr4_3:69260757-69260776 Msa0659020:intron 30.0%
TCAATCACTTGAATAAGATG+AGG - chr4_3:69261126-69261145 Msa0659020:intron 30.0%
!! TTAAGAATTGGTGTCAAACA+AGG - chr4_3:69261173-69261192 Msa0659020:intron 30.0%
!! GAATACAAAGGTTTTGTCAT+TGG - chr4_3:69261269-69261288 Msa0659020:intron 30.0%
ACAGATATGATAGTTAACAG+AGG + chr4_3:69261656-69261675 None:intergenic 30.0%
!!! TTTTTTTTATGGCTGCACTT+GGG - chr4_3:69261888-69261907 Msa0659020:intron 30.0%
! GAATGTTTGAAGCAATACTT+CGG - chr4_3:69262183-69262202 Msa0659020:intron 30.0%
CAATACTTCGGAGTAATTAT+AGG - chr4_3:69262195-69262214 Msa0659020:intron 30.0%
GGGACAAAACAAAAACATAT+TGG - chr4_3:69260291-69260310 Msa0659020:three_prime_UTR 30.0%
TTCTCTACACAAATCAAACA+TGG - chr4_3:69260337-69260356 Msa0659020:three_prime_UTR 30.0%
ATACTCCTATTAATTAGGGT+AGG + chr4_3:69260709-69260728 None:intergenic 30.0%
!! TTGTTATTTCCTATGAACCA+CGG - chr4_3:69260757-69260776 Msa0659020:intron 30.0%
TCAATCACTTGAATAAGATG+AGG - chr4_3:69261126-69261145 Msa0659020:intron 30.0%
!! TTAAGAATTGGTGTCAAACA+AGG - chr4_3:69261173-69261192 Msa0659020:intron 30.0%
!! GAATACAAAGGTTTTGTCAT+TGG - chr4_3:69261269-69261288 Msa0659020:intron 30.0%
ACAGATATGATAGTTAACAG+AGG + chr4_3:69261656-69261675 None:intergenic 30.0%
!!! TTTTTTTTATGGCTGCACTT+GGG - chr4_3:69261888-69261907 Msa0659020:intron 30.0%
! GAATGTTTGAAGCAATACTT+CGG - chr4_3:69262183-69262202 Msa0659020:intron 30.0%
CAATACTTCGGAGTAATTAT+AGG - chr4_3:69262195-69262214 Msa0659020:intron 30.0%
ATCGAATTGAGAGAGGTTTA+GGG + chr4_3:69260493-69260512 None:intergenic 35.0%
GGGGTTATGCAGAAAAATTA+AGG + chr4_3:69260680-69260699 None:intergenic 35.0%
ATTAATTAGGGTAGGCAAAG+CGG + chr4_3:69260701-69260720 None:intergenic 35.0%
CTTTGCCTACCCTAATTAAT+AGG - chr4_3:69260701-69260720 Msa0659020:CDS 35.0%
! TCTTTACACTCAGATTAGTC+AGG - chr4_3:69260871-69260890 Msa0659020:intron 35.0%
! CTTTACACTCAGATTAGTCA+GGG - chr4_3:69260872-69260891 Msa0659020:intron 35.0%
TTATCTGTAAGCGAAATTGC+AGG + chr4_3:69261101-69261120 None:intergenic 35.0%
!! GTCATACACAATGGATTTTG+AGG - chr4_3:69261211-69261230 Msa0659020:intron 35.0%
GACTCCATCATTGAATACAA+AGG - chr4_3:69261257-69261276 Msa0659020:intron 35.0%
! TTTTCCTGCTCTTTCTCTTT+TGG - chr4_3:69261320-69261339 Msa0659020:intron 35.0%
! TTGTTGTTGTTGTTGTACAG+TGG - chr4_3:69261452-69261471 Msa0659020:CDS 35.0%
! TGTTGTTGTTGTTGTACAGT+GGG - chr4_3:69261453-69261472 Msa0659020:CDS 35.0%
TCAAGACTTGATTGAAAGCT+TGG - chr4_3:69261779-69261798 Msa0659020:intron 35.0%
AAGAACTGAAGAAGATAACG+TGG + chr4_3:69261811-69261830 None:intergenic 35.0%
!!! TTACTGGTTTTTGCAGCAAT+TGG - chr4_3:69261844-69261863 Msa0659020:intron 35.0%
!!! CTTTTTTTTATGGCTGCACT+TGG - chr4_3:69261887-69261906 Msa0659020:intron 35.0%
AAATGATTTACCACATCCAC+AGG + chr4_3:69262112-69262131 None:intergenic 35.0%
CACAGCAAACAAACAGATAT+GGG + chr4_3:69262283-69262302 None:intergenic 35.0%
! CTCTGTTGATACATCGATTA+TGG - chr4_3:69262393-69262412 Msa0659020:five_prime_UTR 35.0%
! CTCTGTTGATACATCGATTA+TGG - chr4_3:69262393-69262412 Msa0659020:five_prime_UTR 35.0%
ATCGAATTGAGAGAGGTTTA+GGG + chr4_3:69260493-69260512 None:intergenic 35.0%
GGGGTTATGCAGAAAAATTA+AGG + chr4_3:69260680-69260699 None:intergenic 35.0%
ATTAATTAGGGTAGGCAAAG+CGG + chr4_3:69260701-69260720 None:intergenic 35.0%
CTTTGCCTACCCTAATTAAT+AGG - chr4_3:69260701-69260720 Msa0659020:CDS 35.0%
! TCTTTACACTCAGATTAGTC+AGG - chr4_3:69260871-69260890 Msa0659020:intron 35.0%
! CTTTACACTCAGATTAGTCA+GGG - chr4_3:69260872-69260891 Msa0659020:intron 35.0%
TTATCTGTAAGCGAAATTGC+AGG + chr4_3:69261101-69261120 None:intergenic 35.0%
!! GTCATACACAATGGATTTTG+AGG - chr4_3:69261211-69261230 Msa0659020:intron 35.0%
GACTCCATCATTGAATACAA+AGG - chr4_3:69261257-69261276 Msa0659020:intron 35.0%
! TTTTCCTGCTCTTTCTCTTT+TGG - chr4_3:69261320-69261339 Msa0659020:intron 35.0%
! TTGTTGTTGTTGTTGTACAG+TGG - chr4_3:69261452-69261471 Msa0659020:CDS 35.0%
! TGTTGTTGTTGTTGTACAGT+GGG - chr4_3:69261453-69261472 Msa0659020:CDS 35.0%
TCAAGACTTGATTGAAAGCT+TGG - chr4_3:69261779-69261798 Msa0659020:intron 35.0%
AAGAACTGAAGAAGATAACG+TGG + chr4_3:69261811-69261830 None:intergenic 35.0%
!!! TTACTGGTTTTTGCAGCAAT+TGG - chr4_3:69261844-69261863 Msa0659020:intron 35.0%
!!! CTTTTTTTTATGGCTGCACT+TGG - chr4_3:69261887-69261906 Msa0659020:intron 35.0%
AAATGATTTACCACATCCAC+AGG + chr4_3:69262112-69262131 None:intergenic 35.0%
CACAGCAAACAAACAGATAT+GGG + chr4_3:69262283-69262302 None:intergenic 35.0%
! CTCTGTTGATACATCGATTA+TGG - chr4_3:69262393-69262412 Msa0659020:five_prime_UTR 35.0%
! CTCTGTTGATACATCGATTA+TGG - chr4_3:69262393-69262412 Msa0659020:five_prime_UTR 35.0%
ACACAAATCAAACATGGCCA+TGG - chr4_3:69260343-69260362 Msa0659020:three_prime_UTR 40.0%
GATCGAATTGAGAGAGGTTT+AGG + chr4_3:69260494-69260513 None:intergenic 40.0%
GAAAGTGATCGAATTGAGAG+AGG + chr4_3:69260500-69260519 None:intergenic 40.0%
TAGAAGAATATGGGGCTTAC+CGG + chr4_3:69260534-69260553 None:intergenic 40.0%
! AAACCTAGCAGCAAGTATTG+GGG + chr4_3:69260638-69260657 None:intergenic 40.0%
CAAACCTAGCAGCAAGTATT+GGG + chr4_3:69260639-69260658 None:intergenic 40.0%
ACAAACCTAGCAGCAAGTAT+TGG + chr4_3:69260640-69260659 None:intergenic 40.0%
TTAATTAGGGTAGGCAAAGC+GGG + chr4_3:69260700-69260719 None:intergenic 40.0%
GAGATAAGAAATCACCCATG+TGG + chr4_3:69260790-69260809 None:intergenic 40.0%
!! AGAATTGGTGTCAAACAAGG+TGG - chr4_3:69261176-69261195 Msa0659020:intron 40.0%
!! GAATTGGTGTCAAACAAGGT+GGG - chr4_3:69261177-69261196 Msa0659020:intron 40.0%
CTCTGGTATGTCATACACAA+TGG - chr4_3:69261202-69261221 Msa0659020:intron 40.0%
!! ACACAATGGATTTTGAGGAC+AGG - chr4_3:69261216-69261235 Msa0659020:intron 40.0%
!! CACAATGGATTTTGAGGACA+GGG - chr4_3:69261217-69261236 Msa0659020:intron 40.0%
! TATTCAATGATGGAGTCGTC+TGG + chr4_3:69261254-69261273 None:intergenic 40.0%
!!! GTGGGTGTTTTATTTCAACG+CGG - chr4_3:69261471-69261490 Msa0659020:CDS 40.0%
!!! TGGGTGTTTTATTTCAACGC+GGG - chr4_3:69261472-69261491 Msa0659020:CDS 40.0%
AATCCTGCTTAACAAAGTGC+TGG + chr4_3:69261745-69261764 None:intergenic 40.0%
AACTGAAGAAGATAACGTGG+AGG + chr4_3:69261808-69261827 None:intergenic 40.0%
TAAGCTTGGCAAACGAAAGA+AGG - chr4_3:69261928-69261947 Msa0659020:intron 40.0%
AATACGAAGAGTAGGCTCTT+AGG + chr4_3:69262015-69262034 None:intergenic 40.0%
AAGAGCCTACTCTTCGTATT+TGG - chr4_3:69262015-69262034 Msa0659020:intron 40.0%
GCATTCCAAATACGAAGAGT+AGG + chr4_3:69262023-69262042 None:intergenic 40.0%
CCACAGCAAACAAACAGATA+TGG + chr4_3:69262284-69262303 None:intergenic 40.0%
! CCATATCTGTTTGTTTGCTG+TGG - chr4_3:69262281-69262300 Msa0659020:CDS 40.0%
ACAATAAACTGATGCACCAC+AGG + chr4_3:69262307-69262326 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG + chr4_3:69262389-69262408 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG + chr4_3:69262389-69262408 None:intergenic 40.0%
ACACAAATCAAACATGGCCA+TGG - chr4_3:69260343-69260362 Msa0659020:three_prime_UTR 40.0%
GATCGAATTGAGAGAGGTTT+AGG + chr4_3:69260494-69260513 None:intergenic 40.0%
GAAAGTGATCGAATTGAGAG+AGG + chr4_3:69260500-69260519 None:intergenic 40.0%
TAGAAGAATATGGGGCTTAC+CGG + chr4_3:69260534-69260553 None:intergenic 40.0%
! AAACCTAGCAGCAAGTATTG+GGG + chr4_3:69260638-69260657 None:intergenic 40.0%
CAAACCTAGCAGCAAGTATT+GGG + chr4_3:69260639-69260658 None:intergenic 40.0%
ACAAACCTAGCAGCAAGTAT+TGG + chr4_3:69260640-69260659 None:intergenic 40.0%
TTAATTAGGGTAGGCAAAGC+GGG + chr4_3:69260700-69260719 None:intergenic 40.0%
GAGATAAGAAATCACCCATG+TGG + chr4_3:69260790-69260809 None:intergenic 40.0%
!! AGAATTGGTGTCAAACAAGG+TGG - chr4_3:69261176-69261195 Msa0659020:intron 40.0%
!! GAATTGGTGTCAAACAAGGT+GGG - chr4_3:69261177-69261196 Msa0659020:intron 40.0%
CTCTGGTATGTCATACACAA+TGG - chr4_3:69261202-69261221 Msa0659020:intron 40.0%
!! ACACAATGGATTTTGAGGAC+AGG - chr4_3:69261216-69261235 Msa0659020:intron 40.0%
!! CACAATGGATTTTGAGGACA+GGG - chr4_3:69261217-69261236 Msa0659020:intron 40.0%
! TATTCAATGATGGAGTCGTC+TGG + chr4_3:69261254-69261273 None:intergenic 40.0%
!!! GTGGGTGTTTTATTTCAACG+CGG - chr4_3:69261471-69261490 Msa0659020:CDS 40.0%
!!! TGGGTGTTTTATTTCAACGC+GGG - chr4_3:69261472-69261491 Msa0659020:CDS 40.0%
AATCCTGCTTAACAAAGTGC+TGG + chr4_3:69261745-69261764 None:intergenic 40.0%
AACTGAAGAAGATAACGTGG+AGG + chr4_3:69261808-69261827 None:intergenic 40.0%
TAAGCTTGGCAAACGAAAGA+AGG - chr4_3:69261928-69261947 Msa0659020:intron 40.0%
AATACGAAGAGTAGGCTCTT+AGG + chr4_3:69262015-69262034 None:intergenic 40.0%
AAGAGCCTACTCTTCGTATT+TGG - chr4_3:69262015-69262034 Msa0659020:intron 40.0%
GCATTCCAAATACGAAGAGT+AGG + chr4_3:69262023-69262042 None:intergenic 40.0%
CCACAGCAAACAAACAGATA+TGG + chr4_3:69262284-69262303 None:intergenic 40.0%
! CCATATCTGTTTGTTTGCTG+TGG - chr4_3:69262281-69262300 Msa0659020:CDS 40.0%
ACAATAAACTGATGCACCAC+AGG + chr4_3:69262307-69262326 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG + chr4_3:69262389-69262408 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG + chr4_3:69262389-69262408 None:intergenic 40.0%
AAATCAAACATGGCCATGGC+TGG - chr4_3:69260347-69260366 Msa0659020:three_prime_UTR 45.0%
ATTGGAACGCGAACGAATTG+GGG + chr4_3:69260413-69260432 None:intergenic 45.0%
GATTGGAACGCGAACGAATT+GGG + chr4_3:69260414-69260433 None:intergenic 45.0%
TGATTGGAACGCGAACGAAT+TGG + chr4_3:69260415-69260434 None:intergenic 45.0%
GAGAGAGAGCTATGAGTGAT+TGG + chr4_3:69260431-69260450 None:intergenic 45.0%
CTAAAGCGGCGATTGAGAAT+TGG + chr4_3:69260470-69260489 None:intergenic 45.0%
! AGAGAGGTTTAGGGCTAAAG+CGG + chr4_3:69260484-69260503 None:intergenic 45.0%
TCACTTTCCGTTATTGCTGC+CGG - chr4_3:69260512-69260531 Msa0659020:three_prime_UTR 45.0%
TAATTAGGGTAGGCAAAGCG+GGG + chr4_3:69260699-69260718 None:intergenic 45.0%
! TCAGGGTTCGTTGTGACTTT+TGG - chr4_3:69260889-69260908 Msa0659020:intron 45.0%
ATACATGGTCGAGACAGACA+GGG + chr4_3:69261019-69261038 None:intergenic 45.0%
AATACATGGTCGAGACAGAC+AGG + chr4_3:69261020-69261039 None:intergenic 45.0%
!!! ATTTTAGCTGCACCTGCATC+TGG - chr4_3:69261065-69261084 Msa0659020:intron 45.0%
!! TTTTAGCTGCACCTGCATCT+GGG - chr4_3:69261066-69261085 Msa0659020:intron 45.0%
TGGACCAAAAGAGAAAGAGC+AGG + chr4_3:69261327-69261346 None:intergenic 45.0%
! GCTCTTTCTCTTTTGGTCCA+AGG - chr4_3:69261327-69261346 Msa0659020:intron 45.0%
!! CTGGTTTTTGCAGCAATTGG+TGG - chr4_3:69261847-69261866 Msa0659020:intron 45.0%
GACTACAGTGATGCTCTGAT+TGG - chr4_3:69262048-69262067 Msa0659020:intron 45.0%
TACAGTGATGCTCTGATTGG+AGG - chr4_3:69262051-69262070 Msa0659020:intron 45.0%
AAATCAAACATGGCCATGGC+TGG - chr4_3:69260347-69260366 Msa0659020:three_prime_UTR 45.0%
ATTGGAACGCGAACGAATTG+GGG + chr4_3:69260413-69260432 None:intergenic 45.0%
GATTGGAACGCGAACGAATT+GGG + chr4_3:69260414-69260433 None:intergenic 45.0%
TGATTGGAACGCGAACGAAT+TGG + chr4_3:69260415-69260434 None:intergenic 45.0%
GAGAGAGAGCTATGAGTGAT+TGG + chr4_3:69260431-69260450 None:intergenic 45.0%
CTAAAGCGGCGATTGAGAAT+TGG + chr4_3:69260470-69260489 None:intergenic 45.0%
! AGAGAGGTTTAGGGCTAAAG+CGG + chr4_3:69260484-69260503 None:intergenic 45.0%
TCACTTTCCGTTATTGCTGC+CGG - chr4_3:69260512-69260531 Msa0659020:three_prime_UTR 45.0%
TAATTAGGGTAGGCAAAGCG+GGG + chr4_3:69260699-69260718 None:intergenic 45.0%
! TCAGGGTTCGTTGTGACTTT+TGG - chr4_3:69260889-69260908 Msa0659020:intron 45.0%
ATACATGGTCGAGACAGACA+GGG + chr4_3:69261019-69261038 None:intergenic 45.0%
AATACATGGTCGAGACAGAC+AGG + chr4_3:69261020-69261039 None:intergenic 45.0%
!!! ATTTTAGCTGCACCTGCATC+TGG - chr4_3:69261065-69261084 Msa0659020:intron 45.0%
!! TTTTAGCTGCACCTGCATCT+GGG - chr4_3:69261066-69261085 Msa0659020:intron 45.0%
TGGACCAAAAGAGAAAGAGC+AGG + chr4_3:69261327-69261346 None:intergenic 45.0%
! GCTCTTTCTCTTTTGGTCCA+AGG - chr4_3:69261327-69261346 Msa0659020:intron 45.0%
!! CTGGTTTTTGCAGCAATTGG+TGG - chr4_3:69261847-69261866 Msa0659020:intron 45.0%
GACTACAGTGATGCTCTGAT+TGG - chr4_3:69262048-69262067 Msa0659020:intron 45.0%
TACAGTGATGCTCTGATTGG+AGG - chr4_3:69262051-69262070 Msa0659020:intron 45.0%
CAATTACTACTACCGCGCAC+TGG - chr4_3:69260384-69260403 Msa0659020:three_prime_UTR 50.0%
! AGACCCCAATACTTGCTGCT+AGG - chr4_3:69260632-69260651 Msa0659020:CDS 50.0%
! GGGAGTGCAACAAAGCACTT+CGG - chr4_3:69260943-69260962 Msa0659020:intron 50.0%
TACATGGTCGAGACAGACAG+GGG + chr4_3:69261018-69261037 None:intergenic 50.0%
TTTAGCTGCACCTGCATCTG+GGG - chr4_3:69261067-69261086 Msa0659020:intron 50.0%
AAGCGAAATTGCAGGTGCCA+CGG + chr4_3:69261093-69261112 None:intergenic 50.0%
TTGAGGACAGGGCTAATGCA+AGG - chr4_3:69261228-69261247 Msa0659020:intron 50.0%
CTGCCAGCACTTTGTTAAGC+AGG - chr4_3:69261739-69261758 Msa0659020:intron 50.0%
AGTGATGCTCTGATTGGAGG+AGG - chr4_3:69262054-69262073 Msa0659020:intron 50.0%
CCACAGGTTTGTGTCGCATT+AGG + chr4_3:69262096-69262115 None:intergenic 50.0%
CCTAATGCGACACAAACCTG+TGG - chr4_3:69262093-69262112 Msa0659020:intron 50.0%
!! TGTTTGTTTGCTGTGGCCTG+TGG - chr4_3:69262288-69262307 Msa0659020:CDS 50.0%
CAATTACTACTACCGCGCAC+TGG - chr4_3:69260384-69260403 Msa0659020:three_prime_UTR 50.0%
! AGACCCCAATACTTGCTGCT+AGG - chr4_3:69260632-69260651 Msa0659020:CDS 50.0%
! GGGAGTGCAACAAAGCACTT+CGG - chr4_3:69260943-69260962 Msa0659020:intron 50.0%
TACATGGTCGAGACAGACAG+GGG + chr4_3:69261018-69261037 None:intergenic 50.0%
TTTAGCTGCACCTGCATCTG+GGG - chr4_3:69261067-69261086 Msa0659020:intron 50.0%
AAGCGAAATTGCAGGTGCCA+CGG + chr4_3:69261093-69261112 None:intergenic 50.0%
TTGAGGACAGGGCTAATGCA+AGG - chr4_3:69261228-69261247 Msa0659020:intron 50.0%
CTGCCAGCACTTTGTTAAGC+AGG - chr4_3:69261739-69261758 Msa0659020:intron 50.0%
AGTGATGCTCTGATTGGAGG+AGG - chr4_3:69262054-69262073 Msa0659020:intron 50.0%
CCACAGGTTTGTGTCGCATT+AGG + chr4_3:69262096-69262115 None:intergenic 50.0%
CCTAATGCGACACAAACCTG+TGG - chr4_3:69262093-69262112 Msa0659020:intron 50.0%
!! TGTTTGTTTGCTGTGGCCTG+TGG - chr4_3:69262288-69262307 Msa0659020:CDS 50.0%
AGAGAAAGCAGCACCAGCCA+TGG + chr4_3:69260363-69260382 None:intergenic 55.0%
GGGCTTACCGGCAGCAATAA+CGG + chr4_3:69260522-69260541 None:intergenic 55.0%
GGCATGTGTCCGTGGTTCAT+AGG + chr4_3:69260769-69260788 None:intergenic 55.0%
AACCACGGACACATGCCACA+TGG - chr4_3:69260772-69260791 Msa0659020:intron 55.0%
ACCACGGACACATGCCACAT+GGG - chr4_3:69260773-69260792 Msa0659020:intron 55.0%
GTCAAACAAGGTGGGTGCTC+TGG - chr4_3:69261185-69261204 Msa0659020:intron 55.0%
GCGACACAAACCTGTGGATG+TGG - chr4_3:69262099-69262118 Msa0659020:intron 55.0%
AGAGAAAGCAGCACCAGCCA+TGG + chr4_3:69260363-69260382 None:intergenic 55.0%
GGGCTTACCGGCAGCAATAA+CGG + chr4_3:69260522-69260541 None:intergenic 55.0%
GGCATGTGTCCGTGGTTCAT+AGG + chr4_3:69260769-69260788 None:intergenic 55.0%
AACCACGGACACATGCCACA+TGG - chr4_3:69260772-69260791 Msa0659020:intron 55.0%
ACCACGGACACATGCCACAT+GGG - chr4_3:69260773-69260792 Msa0659020:intron 55.0%
GTCAAACAAGGTGGGTGCTC+TGG - chr4_3:69261185-69261204 Msa0659020:intron 55.0%
GCGACACAAACCTGTGGATG+TGG - chr4_3:69262099-69262118 Msa0659020:intron 55.0%
GAATTGGGGAGACCAGTGCG+CGG + chr4_3:69260399-69260418 None:intergenic 60.0%
ACCCATGTGGCATGTGTCCG+TGG + chr4_3:69260777-69260796 None:intergenic 60.0%
GAATTGGGGAGACCAGTGCG+CGG + chr4_3:69260399-69260418 None:intergenic 60.0%
ACCCATGTGGCATGTGTCCG+TGG + chr4_3:69260777-69260796 None:intergenic 60.0%
! TGCACCTGCATCTGGGGCCG+TGG - chr4_3:69261073-69261092 Msa0659020:intron 70.0%
! TGCACCTGCATCTGGGGCCG+TGG - chr4_3:69261073-69261092 Msa0659020:intron 70.0%
! GGTGCCACGGCCCCAGATGC+AGG + chr4_3:69261080-69261099 None:intergenic 75.0%
! GGTGCCACGGCCCCAGATGC+AGG + chr4_3:69261080-69261099 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 69260271 69262460 69260271 ID=Msa0659020;Name=Msa0659020
chr4_3 mRNA 69260271 69262460 69260271 ID=Msa0659020-mRNA-1;Parent=Msa0659020;Name=Msa0659020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=85|1|1|1|1|1|3|314|179
chr4_3 exon 69260271 69260727 69260271 ID=Msa0659020-mRNA-1:exon:20278;Parent=Msa0659020-mRNA-1
chr4_3 exon 69261441 69261659 69261441 ID=Msa0659020-mRNA-1:exon:20277;Parent=Msa0659020-mRNA-1
chr4_3 exon 69262198 69262460 69262198 ID=Msa0659020-mRNA-1:exon:20276;Parent=Msa0659020-mRNA-1
chr4_3 five_prime_UTR 69262376 69262460 69262376 ID=Msa0659020-mRNA-1:five_prime_utr;Parent=Msa0659020-mRNA-1
chr4_3 CDS 69262198 69262375 69262198 ID=Msa0659020-mRNA-1:cds;Parent=Msa0659020-mRNA-1
chr4_3 CDS 69261441 69261659 69261441 ID=Msa0659020-mRNA-1:cds;Parent=Msa0659020-mRNA-1
chr4_3 CDS 69260585 69260727 69260585 ID=Msa0659020-mRNA-1:cds;Parent=Msa0659020-mRNA-1
chr4_3 three_prime_UTR 69260271 69260584 69260271 ID=Msa0659020-mRNA-1:three_prime_utr;Parent=Msa0659020-mRNA-1
Gene Sequence

>Msa0659020

ATGGCCATGGCTGGTGCTGCTTTCTCTACAATTACTACTACCGCGCACTGGTCTCCCCAATTCGTTCGCGTTCCAATCACTCATAGCTCTCTCTCTTTTCGATTTTCAACTCCAATTCTCAATCGCCGCTTTAGCCCTAAACCTCTCTCAATTCGATCACTTTCCGTTATTGCTGCCGCTGCACCTGCATCTGGGGCCGTGGCACCTGCAATTTCGCTTACAGATAATGCACTCAATCACTTGAATAAGATGAGGTCTGAACGAAGTCAAGATTTGTGTTTAAGAATTGGTGTCAAACAAGGTGGGTGCTCTGGTATGTCATACACAATGGATTTTGAGGACAGGGCTAATGCAAGGCCAGACGACTCCATCATTGAATACAAAGGTTTTGTCATTGTTTGTGATCCTAAGAGCCTACTCTTCGTATTTGGAATGCAATTAGACTACAGTGATGCTCTGATTGGAGGAGGCTTCAATTTCAAGAATCCTAATGCGACACAAACCTGTGGATGTGGTAAATCATTTAATGCAGAAATGTAA

Protein sequence

>Msa0659020

MAMAGAAFSTITTTAHWSPQFVRVPITHSSLSFRFSTPILNRRFSPKPLSIRSLSVIAAAAPASGAVAPAISLTDNALNHLNKMRSERSQDLCLRIGVKQGGCSGMSYTMDFEDRANARPDDSIIEYKGFVIVCDPKSLLFVFGMQLDYSDALIGGGFNFKNPNATQTCGCGKSFNAEM*