AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0687220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687220 MtrunA17_Chr4g0037521 90.570 509 48 0 13 521 1 509 0.0 961
Msa0687220 MtrunA17_Chr8g0377681 61.089 496 177 8 37 526 28 513 0.0 582
Msa0687220 MtrunA17_Chr8g0377691 59.091 506 192 8 19 519 13 508 0.0 577
Msa0687220 MtrunA17_Chr8g0377701 59.921 504 187 8 21 519 16 509 0.0 576
Msa0687220 MtrunA17_Chr8g0377651 59.761 502 187 8 23 519 17 508 0.0 573
Msa0687220 MtrunA17_Chr8g0377641 58.449 503 193 9 24 520 15 507 0.0 571
Msa0687220 MtrunA17_Chr4g0037491 90.196 306 30 0 210 515 1 306 0.0 565
Msa0687220 MtrunA17_Chr4g0037501 83.158 95 15 1 108 201 1 95 3.66e-50 167
Msa0687220 MtrunA17_Chr8g0385461 34.454 238 144 5 46 281 162 389 1.03e-29 123
Msa0687220 MtrunA17_Chr3g0097801 28.287 502 323 15 45 520 41 531 2.37e-27 115
Msa0687220 MtrunA17_Chr2g0279961 24.138 493 337 12 47 523 130 601 8.41e-26 111
Msa0687220 MtrunA17_Chr8g0377661 65.278 72 24 1 448 519 1 71 3.33e-23 93.6
Msa0687220 MtrunA17_Chr3g0130801 27.255 499 309 18 46 522 200 666 9.77e-19 89.7
Msa0687220 MtrunA17_Chr8g0384851 24.850 499 322 13 46 522 136 603 5.29e-18 87.4
Msa0687220 MtrunA17_Chr1g0191741 35.606 132 75 3 144 271 63 188 9.93e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687220 AT4G34880.2 57.631 498 198 4 24 519 22 508 0.0 548
Msa0687220 AT4G34880.1 51.004 498 185 5 24 519 22 462 2.19e-169 487
Msa0687220 AT5G07360.1 32.377 244 155 4 46 288 204 438 6.28e-26 112
Msa0687220 AT5G07360.3 32.377 244 155 4 46 288 204 438 6.28e-26 112
Msa0687220 AT3G25660.1 26.471 544 324 17 21 520 21 532 2.20e-25 110
Msa0687220 AT5G64440.1 26.728 434 274 12 107 523 195 601 1.62e-24 107
Msa0687220 AT5G07360.2 31.967 244 149 5 46 288 204 431 1.67e-22 102
Msa0687220 AT1G08980.1 38.333 120 67 2 144 262 64 177 5.75e-13 71.2

Find 133 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAAATACATACTAAAAT+AGG 0.142863 4_4:+52034326 None:intergenic
CACATGTGGTTTCGAAATTA+AGG 0.182180 4_4:-52035759 Msa0687220:CDS
GGAAGCCGGTGCCATTATTC+TGG 0.250921 4_4:-52035737 Msa0687220:CDS
CTTTATTTGTTGAAACTAAC+TGG 0.253674 4_4:+52036178 None:intergenic
AGACTTGACCGGTAGCTTTC+TGG 0.254277 4_4:-52033643 Msa0687220:three_prime_UTR
TGCAACAGTGGTGGATAATT+TGG 0.256591 4_4:-52034507 Msa0687220:CDS
TGCTTCTTGTATGTCTTCTA+TGG 0.260952 4_4:+52036053 None:intergenic
ACAATATTACATATTTAATC+AGG 0.287264 4_4:-52033594 Msa0687220:three_prime_UTR
AGAAAATTTAAGCACCGTTC+TGG 0.305636 4_4:-52034480 Msa0687220:CDS
CCTCTGGCGCACCAAGCTTC+TGG 0.314745 4_4:+52035667 None:intergenic
TTTGTAGCTTCATAATCTCT+TGG 0.332598 4_4:+52034873 None:intergenic
AGCAGGTTCTTATGCATTGT+TGG 0.339619 4_4:-52035803 Msa0687220:CDS
ATACTGTCCTTCAGCAAAAC+AGG 0.343096 4_4:+52035853 None:intergenic
ATGCCATTTGGAATCTGTTT+TGG 0.346624 4_4:-52033795 Msa0687220:CDS
CAGGAAAAGACTAATGAGTA+TGG 0.349839 4_4:-52034038 Msa0687220:CDS
TCAGAAATGACAAGTGGAAT+TGG 0.351271 4_4:-52033996 Msa0687220:CDS
TAACATGGTTGCAGTTTCAT+TGG 0.354483 4_4:-52035196 Msa0687220:CDS
GGTCTCAATGGAAAGAAAAT+AGG 0.357122 4_4:-52034795 Msa0687220:CDS
GTATCTTGACGAGGTGAAAT+TGG 0.364768 4_4:+52035075 None:intergenic
CAATTTGAATTCTGAAAGTA+AGG 0.368656 4_4:+52034430 None:intergenic
CGTGACCGTTCGTTGCTTCA+TGG 0.370142 4_4:-52035880 Msa0687220:CDS
AACATGGTTGCAGTTTCATT+GGG 0.371572 4_4:-52035195 Msa0687220:CDS
CATAAATACATACTAAAATA+GGG 0.375693 4_4:+52034327 None:intergenic
GCAGGTTCTTATGCATTGTT+GGG 0.382233 4_4:-52035802 Msa0687220:CDS
CAGCACCAAGTATTGGATTC+AGG 0.382460 4_4:+52035968 None:intergenic
CAATGTCACTTCCATCTTTG+AGG 0.393004 4_4:-52034733 Msa0687220:CDS
GCAGCTAAGTTTATACCTTC+AGG 0.395988 4_4:-52034846 Msa0687220:CDS
AGTCCTTGCGGGTCTAGCTT+TGG 0.397039 4_4:-52035240 Msa0687220:CDS
TTTGATAAAGAAGAATCAAT+TGG 0.401016 4_4:-52033913 Msa0687220:CDS
TCTGAAACTGTCCTGCATAT+TGG 0.401701 4_4:+52034933 None:intergenic
CTCAATAAACAAGGTCTCAA+TGG 0.407744 4_4:-52034807 Msa0687220:CDS
TTGTAGCTTCATAATCTCTT+GGG 0.418485 4_4:+52034874 None:intergenic
CCACCGTTGGACTCACTAGT+AGG 0.419110 4_4:-52035110 Msa0687220:CDS
CTAGTCTCTCGGAGTGGTAT+GGG 0.419677 4_4:-52035708 Msa0687220:CDS
CATTGAGACCTTGTTTATTG+AGG 0.434452 4_4:+52034808 None:intergenic
GTGACCGTTCGTTGCTTCAT+GGG 0.437734 4_4:-52035879 Msa0687220:CDS
GCTTCTCCAATGTTGGCAAT+TGG 0.439223 4_4:-52033864 Msa0687220:CDS
ACATGTGGTTTCGAAATTAA+GGG 0.446335 4_4:-52035758 Msa0687220:CDS
TCCAACACAGCACCAAGTAT+TGG 0.446346 4_4:+52035961 None:intergenic
TCTGCTTGATCTCGAGCGTC+AGG 0.448953 4_4:+52035931 None:intergenic
ACAACTGAATTGTGATCAGC+TGG 0.450183 4_4:+52035144 None:intergenic
CGCCAGAGGTGGATTTGCAT+TGG 0.451539 4_4:-52035653 Msa0687220:intron
CATGTGCTTGATGTAATTGT+TGG 0.452305 4_4:-52034903 Msa0687220:CDS
GATCGCGAAGGAATGCCATT+TGG 0.453489 4_4:-52033807 Msa0687220:CDS
TGGAGTCTAAAAGTCCTTGC+GGG 0.463261 4_4:-52035251 Msa0687220:CDS
TCTCCAATGTTGGCAATTGG+AGG 0.468557 4_4:-52033861 Msa0687220:CDS
GCTGATCACAATTCAGTTGT+CGG 0.471714 4_4:-52035141 Msa0687220:CDS
ACTAGTCTCTCGGAGTGGTA+TGG 0.475334 4_4:-52035709 Msa0687220:CDS
GATAAACTCAACACTTCAGC+AGG 0.475725 4_4:-52035820 Msa0687220:CDS
CCAGCTGGGACAGTAATTGC+AGG 0.476312 4_4:+52033834 None:intergenic
ATGACAAGTGGAATTGGAAA+AGG 0.477884 4_4:-52033990 Msa0687220:CDS
GAAGCCGGTGCCATTATTCT+GGG 0.492758 4_4:-52035736 Msa0687220:CDS
CTCAAAGATGGAAGTGACAT+TGG 0.496520 4_4:+52034734 None:intergenic
CATGTTAGTTGCCACTGAAA+TGG 0.497625 4_4:+52035212 None:intergenic
CTCTGATGCTTCTCCAATGT+TGG 0.503905 4_4:-52033871 Msa0687220:CDS
CGCTCGAGATCAAGCAGACA+AGG 0.505254 4_4:-52035926 Msa0687220:CDS
TTATGCATTGTTGGGATCGA+AGG 0.506206 4_4:-52035794 Msa0687220:CDS
ATTGAGATGGTCCTCAAAGA+TGG 0.506790 4_4:+52034722 None:intergenic
CATTTCAGTGGCAACTAACA+TGG 0.509195 4_4:-52035211 Msa0687220:CDS
TGGAGAAGCATCAGAGCCTA+TGG 0.512587 4_4:+52033878 None:intergenic
GAATCAATTGGATGCAGTGT+TGG 0.513137 4_4:-52033901 Msa0687220:CDS
CCTTCGCGATCATATCCAGC+TGG 0.514998 4_4:+52033819 None:intergenic
CCACCAAAACAGATTCCAAA+TGG 0.522144 4_4:+52033792 None:intergenic
GAGGGGTGGCTTCCTTGTCC+TGG 0.523166 4_4:+52033713 None:intergenic
AACCAATGCAAATCCACCTC+TGG 0.526339 4_4:+52035651 None:intergenic
TCACCTCGTCAAGATACTAT+CGG 0.527519 4_4:-52035069 Msa0687220:CDS
TACCCTCCAATTGCCAACAT+TGG 0.534176 4_4:+52033858 None:intergenic
GAAGCTTGGTGCGCCAGAGG+TGG 0.536770 4_4:-52035664 Msa0687220:CDS
CACCTCGTCAAGATACTATC+GGG 0.539125 4_4:-52035068 Msa0687220:intron
GAAAGCTACCGGTCAAGTCT+AGG 0.540214 4_4:+52033646 None:intergenic
TTGGATGCAGTGTTGGCCAT+AGG 0.542689 4_4:-52033894 Msa0687220:CDS
AAAGACTAATGAGTATGGGC+AGG 0.545033 4_4:-52034033 Msa0687220:CDS
TCCAATACTTGGTGCTGTGT+TGG 0.545546 4_4:-52035962 Msa0687220:CDS
TGTTATGCAGAATCCTTATG+TGG 0.546341 4_4:-52035271 Msa0687220:intron
AAGGTCCTGAATCCAATACT+TGG 0.547427 4_4:-52035973 Msa0687220:CDS
CCTGCAATTACTGTCCCAGC+TGG 0.555232 4_4:-52033834 Msa0687220:CDS
GTTTCGAAATTAAGGGAAGC+CGG 0.556197 4_4:-52035751 Msa0687220:CDS
AATTGAAGCAATGAAGATGA+TGG 0.567872 4_4:-52033964 Msa0687220:CDS
CACCGTTGGACTCACTAGTA+GGG 0.568104 4_4:-52035109 Msa0687220:CDS
TACAATCACCAGAAAGCTAC+CGG 0.568508 4_4:+52033635 None:intergenic
CTAACACTGTGCCAGAAGCT+TGG 0.569014 4_4:-52035678 Msa0687220:CDS
CAATATTACATATTTAATCA+GGG 0.573936 4_4:-52033593 Msa0687220:three_prime_UTR
CTCCAATGTTGGCAATTGGA+GGG 0.574109 4_4:-52033860 Msa0687220:CDS
CCAGAAGCTTGGTGCGCCAG+AGG 0.575202 4_4:-52035667 Msa0687220:CDS
TCATTTCACCACTTTGAAGA+GGG 0.576827 4_4:+52034456 None:intergenic
TCTGGGGAAAACTAGTCTCT+CGG 0.577590 4_4:-52035719 Msa0687220:CDS
ATCATTTCACCACTTTGAAG+AGG 0.579767 4_4:+52034455 None:intergenic
TTTACCTCAACACATTGAGA+TGG 0.579955 4_4:+52034709 None:intergenic
GTCGGAATCAAGCCCACCGT+TGG 0.580429 4_4:-52035123 Msa0687220:CDS
GTTGGACTCACTAGTAGGGC+TGG 0.583241 4_4:-52035105 Msa0687220:CDS
ATCTCAGCTAGAGACTTCAC+AGG 0.586005 4_4:+52034371 None:intergenic
TTGAGCAAGCTACCAGGACA+AGG 0.587838 4_4:-52033725 Msa0687220:CDS
TTTCCCCAGAATAATGGCAC+CGG 0.588790 4_4:+52035732 None:intergenic
AGGAAAAGACTAATGAGTAT+GGG 0.589935 4_4:-52034037 Msa0687220:CDS
TATTAGGACCTAGACTTGAC+CGG 0.590062 4_4:-52033654 Msa0687220:three_prime_UTR
AGTTTCAACAAATAAAGAGA+TGG 0.592489 4_4:-52036172 Msa0687220:CDS
CTTCGCGATCATATCCAGCT+GGG 0.598017 4_4:+52033820 None:intergenic
TGAAGTGTTGAGTTTATCAA+AGG 0.598308 4_4:+52035825 None:intergenic
AGGACCATCTCAATGTGTTG+AGG 0.598729 4_4:-52034713 Msa0687220:intron
TAGTCTCTCGGAGTGGTATG+GGG 0.603289 4_4:-52035707 Msa0687220:CDS
GAAACCACATGTGCGTCACG+TGG 0.611446 4_4:+52035769 None:intergenic
CTTTGGATCAGCCATTTCAG+TGG 0.617090 4_4:-52035223 Msa0687220:CDS
GGTTCCACGTGACGCACATG+TGG 0.618497 4_4:-52035773 Msa0687220:CDS
GCTAAGTTTATACCTTCAGG+TGG 0.620054 4_4:-52034843 Msa0687220:CDS
ATATGCAAATCAAGACAAAG+AGG 0.620679 4_4:-52034530 Msa0687220:intron
ACAAAGAGGTGCAACAGTGG+TGG 0.621804 4_4:-52034516 Msa0687220:CDS
AACTAACTGGAATGCTACCA+TGG 0.627095 4_4:+52036191 None:intergenic
ATGGCATCAGAAATGACAAG+TGG 0.628000 4_4:-52034002 Msa0687220:CDS
GTGGAGTCTAAAAGTCCTTG+CGG 0.628103 4_4:-52035252 Msa0687220:CDS
AAGACAAAGAGGTGCAACAG+TGG 0.638746 4_4:-52034519 Msa0687220:CDS
TACTGTCCTTCAGCAAAACA+GGG 0.638923 4_4:+52035854 None:intergenic
TCATGTGTGAATGAAAAGCG+AGG 0.639049 4_4:+52033694 None:intergenic
ACATGGTTGCAGTTTCATTG+GGG 0.641691 4_4:-52035194 Msa0687220:CDS
GATCCAAAGCTAGACCCGCA+AGG 0.645373 4_4:+52035237 None:intergenic
CTACTAGTGAGTCCAACGGT+GGG 0.650363 4_4:+52035111 None:intergenic
CCAGCTGGATATGATCGCGA+AGG 0.652865 4_4:-52033819 Msa0687220:CDS
AAGCAATTCCTCAATAAACA+AGG 0.659450 4_4:-52034816 Msa0687220:CDS
GTTCTGGACCCTCTTCAAAG+TGG 0.660370 4_4:-52034464 Msa0687220:CDS
CATGTGTGAATGAAAAGCGA+GGG 0.669751 4_4:+52033695 None:intergenic
AATTGCTTATAACCACCTGA+AGG 0.670396 4_4:+52034831 None:intergenic
CCTACTAGTGAGTCCAACGG+TGG 0.675556 4_4:+52035110 None:intergenic
AAGCCGGTGCCATTATTCTG+GGG 0.694883 4_4:-52035735 Msa0687220:CDS
TCATTGGGGACAGAAACTGA+TGG 0.695584 4_4:-52035180 Msa0687220:CDS
GGATCCCATGAAGCAACGAA+CGG 0.695610 4_4:+52035875 None:intergenic
TAAATAATAACTAACCACCA+TGG 0.697804 4_4:-52036208 None:intergenic
TGTGAATGAAAAGCGAGGGG+TGG 0.698305 4_4:+52033699 None:intergenic
AGCCCTACTAGTGAGTCCAA+CGG 0.702539 4_4:+52035107 None:intergenic
CAACTGAATTGTGATCAGCT+GGG 0.702745 4_4:+52035145 None:intergenic
ACTTTGAAGAGGGTCCAGAA+CGG 0.708246 4_4:+52034466 None:intergenic
TAACTGGAATGCTACCATGG+TGG 0.727219 4_4:+52036194 None:intergenic
ATGTGTGAATGAAAAGCGAG+GGG 0.754399 4_4:+52033696 None:intergenic
TACCCGATAGTATCTTGACG+AGG 0.755148 4_4:+52035066 None:intergenic
GGAAAACTAGTCTCTCGGAG+TGG 0.758159 4_4:-52035714 Msa0687220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTAAGGATAATATT+AGG - chr4_4:52036111-52036130 Msa0687220:CDS 10.0%
!!! GATTTAGAATTTAATTACAT+TGG - chr4_4:52034344-52034363 Msa0687220:CDS 15.0%
!!! TATATATATATATTTTGCAC+AGG - chr4_4:52034825-52034844 Msa0687220:CDS 15.0%
!! ATATAATAAAACAGACAAAA+TGG + chr4_4:52035235-52035254 None:intergenic 15.0%
!! CATAAATACATACTAAAATA+GGG + chr4_4:52035457-52035476 None:intergenic 15.0%
!! ACATAAATACATACTAAAAT+AGG + chr4_4:52035458-52035477 None:intergenic 15.0%
!! ACAATATTACATATTTAATC+AGG - chr4_4:52036187-52036206 Msa0687220:CDS 15.0%
!! CAATATTACATATTTAATCA+GGG - chr4_4:52036188-52036207 Msa0687220:CDS 15.0%
!! TAACATGTTAACTTTGATAT+TGG - chr4_4:52034232-52034251 Msa0687220:intron 20.0%
!! AAATTTAGCATTAAATAGAG+TGG - chr4_4:52034372-52034391 Msa0687220:CDS 20.0%
!!! TTCCCACATTTAAAATTAAA+GGG + chr4_4:52034799-52034818 None:intergenic 20.0%
!!! ATTCCCACATTTAAAATTAA+AGG + chr4_4:52034800-52034819 None:intergenic 20.0%
!!! ATTATAATTAACTTGAGCTA+AGG + chr4_4:52035549-52035568 None:intergenic 20.0%
!! GATAGTTATAATGCATAATA+GGG + chr4_4:52035628-52035647 None:intergenic 20.0%
!!! GTGTTTTATAATATTTTGCT+CGG - chr4_4:52035681-52035700 Msa0687220:CDS 20.0%
!! TTTGATAAAGAAGAATCAAT+TGG - chr4_4:52035868-52035887 Msa0687220:CDS 20.0%
!! TCACACATGAAAAAAATTTA+AGG - chr4_4:52036100-52036119 Msa0687220:CDS 20.0%
!! CTTTATTTGTTGAAACTAAC+TGG + chr4_4:52033606-52033625 None:intergenic 25.0%
! AGTTTCAACAAATAAAGAGA+TGG - chr4_4:52033609-52033628 Msa0687220:three_prime_UTR 25.0%
! AATTCCTCATGAAATAGAAT+AGG - chr4_4:52034177-52034196 Msa0687220:intron 25.0%
! TGATATGATAACTTTGACAT+TGG - chr4_4:52034426-52034445 Msa0687220:CDS 25.0%
!!! TTGCCCTTTAATTTTAAATG+TGG - chr4_4:52034793-52034812 Msa0687220:CDS 25.0%
!!! TGCCCTTTAATTTTAAATGT+GGG - chr4_4:52034794-52034813 Msa0687220:CDS 25.0%
! CCTTTATAGTGAATCAAAAA+TGG + chr4_4:52035025-52035044 None:intergenic 25.0%
!!! CCATTTTTGATTCACTATAA+AGG - chr4_4:52035022-52035041 Msa0687220:intron 25.0%
!! CAATTTGAATTCTGAAAGTA+AGG + chr4_4:52035354-52035373 None:intergenic 25.0%
! GTCATTCAAAAAGAATTAAG+AGG + chr4_4:52035485-52035504 None:intergenic 25.0%
! GGATAGTTATAATGCATAAT+AGG + chr4_4:52035629-52035648 None:intergenic 25.0%
!! ATATTTTGCTCGGTTTAATT+TGG - chr4_4:52035691-52035710 Msa0687220:CDS 25.0%
! CTTTTACTTACACAGAATCA+AGG - chr4_4:52033789-52033808 Msa0687220:CDS 30.0%
!! TGAAGTGTTGAGTTTATCAA+AGG + chr4_4:52033959-52033978 None:intergenic 30.0%
ACATGTGGTTTCGAAATTAA+GGG - chr4_4:52034023-52034042 Msa0687220:CDS 30.0%
CAATCCTATTCTATTTCATG+AGG + chr4_4:52034184-52034203 None:intergenic 30.0%
TTGTAGCTTCATAATCTCTT+GGG + chr4_4:52034910-52034929 None:intergenic 30.0%
TTTGTAGCTTCATAATCTCT+TGG + chr4_4:52034911-52034930 None:intergenic 30.0%
AAGCAATTCCTCAATAAACA+AGG - chr4_4:52034965-52034984 Msa0687220:intron 30.0%
! GAAAGAAAATAGGTGTTTTG+AGG - chr4_4:52034996-52035015 Msa0687220:intron 30.0%
ATATGCAAATCAAGACAAAG+AGG - chr4_4:52035251-52035270 Msa0687220:CDS 30.0%
TTTGGTTGTTGATCTGTTTA+TGG - chr4_4:52035709-52035728 Msa0687220:CDS 30.0%
AGGAAAAGACTAATGAGTAT+GGG - chr4_4:52035744-52035763 Msa0687220:CDS 30.0%
AATTGAAGCAATGAAGATGA+TGG - chr4_4:52035817-52035836 Msa0687220:CDS 30.0%
TGCTTCTTGTATGTCTTCTA+TGG + chr4_4:52033731-52033750 None:intergenic 35.0%
CACATGTGGTTTCGAAATTA+AGG - chr4_4:52034022-52034041 Msa0687220:CDS 35.0%
!!! ACTAGTTTTCCCCAGAATAA+TGG + chr4_4:52034058-52034077 None:intergenic 35.0%
TGTTATGCAGAATCCTTATG+TGG - chr4_4:52034510-52034529 Msa0687220:CDS 35.0%
TAACATGGTTGCAGTTTCAT+TGG - chr4_4:52034585-52034604 Msa0687220:intron 35.0%
AACATGGTTGCAGTTTCATT+GGG - chr4_4:52034586-52034605 Msa0687220:intron 35.0%
CATGTGCTTGATGTAATTGT+TGG - chr4_4:52034878-52034897 Msa0687220:CDS 35.0%
AATTGCTTATAACCACCTGA+AGG + chr4_4:52034953-52034972 None:intergenic 35.0%
! CATTGAGACCTTGTTTATTG+AGG + chr4_4:52034976-52034995 None:intergenic 35.0%
CTCAATAAACAAGGTCTCAA+TGG - chr4_4:52034974-52034993 Msa0687220:intron 35.0%
GGTCTCAATGGAAAGAAAAT+AGG - chr4_4:52034986-52035005 Msa0687220:intron 35.0%
TTTACCTCAACACATTGAGA+TGG + chr4_4:52035075-52035094 None:intergenic 35.0%
AGAATCAATGACCAATTGAG+GGG + chr4_4:52035126-52035145 None:intergenic 35.0%
GAGAATCAATGACCAATTGA+GGG + chr4_4:52035127-52035146 None:intergenic 35.0%
TGAGAATCAATGACCAATTG+AGG + chr4_4:52035128-52035147 None:intergenic 35.0%
! AGAAAATTTAAGCACCGTTC+TGG - chr4_4:52035301-52035320 Msa0687220:intron 35.0%
! TCATTTCACCACTTTGAAGA+GGG + chr4_4:52035328-52035347 None:intergenic 35.0%
! ATCATTTCACCACTTTGAAG+AGG + chr4_4:52035329-52035348 None:intergenic 35.0%
! GTTTATGGTTTTCTTGTGAC+AGG - chr4_4:52035724-52035743 Msa0687220:CDS 35.0%
CAGGAAAAGACTAATGAGTA+TGG - chr4_4:52035743-52035762 Msa0687220:CDS 35.0%
!!! GTATGGGCAGGATTTTTTTA+TGG - chr4_4:52035760-52035779 Msa0687220:CDS 35.0%
TCAGAAATGACAAGTGGAAT+TGG - chr4_4:52035785-52035804 Msa0687220:CDS 35.0%
ATGACAAGTGGAATTGGAAA+AGG - chr4_4:52035791-52035810 Msa0687220:CDS 35.0%
ATGGAGCAGTTGTCAAAAAA+TGG - chr4_4:52035836-52035855 Msa0687220:CDS 35.0%
TGGAGCAGTTGTCAAAAAAT+GGG - chr4_4:52035837-52035856 Msa0687220:CDS 35.0%
!! ATGCCATTTGGAATCTGTTT+TGG - chr4_4:52035986-52036005 Msa0687220:CDS 35.0%
!!! CATTTGGAATCTGTTTTGGT+GGG - chr4_4:52035990-52036009 Msa0687220:CDS 35.0%
!!! AATCTGTTTTGGTGGGTTAA+AGG - chr4_4:52035997-52036016 Msa0687220:CDS 35.0%
!!! ATCTGTTTTGGTGGGTTAAA+GGG - chr4_4:52035998-52036017 Msa0687220:CDS 35.0%
AACTAACTGGAATGCTACCA+TGG + chr4_4:52033593-52033612 None:intergenic 40.0%
AAGGTCCTGAATCCAATACT+TGG - chr4_4:52033808-52033827 Msa0687220:CDS 40.0%
TACTGTCCTTCAGCAAAACA+GGG + chr4_4:52033930-52033949 None:intergenic 40.0%
ATACTGTCCTTCAGCAAAAC+AGG + chr4_4:52033931-52033950 None:intergenic 40.0%
GATAAACTCAACACTTCAGC+AGG - chr4_4:52033961-52033980 Msa0687220:CDS 40.0%
AGCAGGTTCTTATGCATTGT+TGG - chr4_4:52033978-52033997 Msa0687220:CDS 40.0%
GCAGGTTCTTATGCATTGTT+GGG - chr4_4:52033979-52033998 Msa0687220:CDS 40.0%
TTATGCATTGTTGGGATCGA+AGG - chr4_4:52033987-52034006 Msa0687220:CDS 40.0%
GTTTCGAAATTAAGGGAAGC+CGG - chr4_4:52034030-52034049 Msa0687220:CDS 40.0%
! GGACTTTTAGACTCCACATA+AGG + chr4_4:52034526-52034545 None:intergenic 40.0%
CATGTTAGTTGCCACTGAAA+TGG + chr4_4:52034572-52034591 None:intergenic 40.0%
CATTTCAGTGGCAACTAACA+TGG - chr4_4:52034570-52034589 Msa0687220:intron 40.0%
ACATGGTTGCAGTTTCATTG+GGG - chr4_4:52034587-52034606 Msa0687220:intron 40.0%
CAACTGAATTGTGATCAGCT+GGG + chr4_4:52034639-52034658 None:intergenic 40.0%
ACAACTGAATTGTGATCAGC+TGG + chr4_4:52034640-52034659 None:intergenic 40.0%
GCTGATCACAATTCAGTTGT+CGG - chr4_4:52034640-52034659 Msa0687220:intron 40.0%
GTATCTTGACGAGGTGAAAT+TGG + chr4_4:52034709-52034728 None:intergenic 40.0%
TCACCTCGTCAAGATACTAT+CGG - chr4_4:52034712-52034731 Msa0687220:intron 40.0%
AAAGGGCAAAACTACATCAG+AGG + chr4_4:52034782-52034801 None:intergenic 40.0%
! TCTGAAACTGTCCTGCATAT+TGG + chr4_4:52034851-52034870 None:intergenic 40.0%
GCAGCTAAGTTTATACCTTC+AGG - chr4_4:52034935-52034954 Msa0687220:CDS 40.0%
GCTAAGTTTATACCTTCAGG+TGG - chr4_4:52034938-52034957 Msa0687220:intron 40.0%
CTCAAAGATGGAAGTGACAT+TGG + chr4_4:52035050-52035069 None:intergenic 40.0%
! CAATGTCACTTCCATCTTTG+AGG - chr4_4:52035048-52035067 Msa0687220:intron 40.0%
ATTGAGATGGTCCTCAAAGA+TGG + chr4_4:52035062-52035081 None:intergenic 40.0%
!! TGCAACAGTGGTGGATAATT+TGG - chr4_4:52035274-52035293 Msa0687220:intron 40.0%
GCTAAGGTATAAGCAGTTTG+AGG + chr4_4:52035533-52035552 None:intergenic 40.0%
CCAGACATGACACTAGAATA+GGG + chr4_4:52035650-52035669 None:intergenic 40.0%
ACCAGACATGACACTAGAAT+AGG + chr4_4:52035651-52035670 None:intergenic 40.0%
AAAGACTAATGAGTATGGGC+AGG - chr4_4:52035748-52035767 Msa0687220:CDS 40.0%
ATGGCATCAGAAATGACAAG+TGG - chr4_4:52035779-52035798 Msa0687220:CDS 40.0%
GAATCAATTGGATGCAGTGT+TGG - chr4_4:52035880-52035899 Msa0687220:CDS 40.0%
CCACCAAAACAGATTCCAAA+TGG + chr4_4:52035992-52036011 None:intergenic 40.0%
!! CCATTTGGAATCTGTTTTGG+TGG - chr4_4:52035989-52036008 Msa0687220:CDS 40.0%
! ATGATTTTGAGCAAGCTACC+AGG - chr4_4:52036050-52036069 Msa0687220:CDS 40.0%
ATGTGTGAATGAAAAGCGAG+GGG + chr4_4:52036088-52036107 None:intergenic 40.0%
CATGTGTGAATGAAAAGCGA+GGG + chr4_4:52036089-52036108 None:intergenic 40.0%
TCATGTGTGAATGAAAAGCG+AGG + chr4_4:52036090-52036109 None:intergenic 40.0%
TATTAGGACCTAGACTTGAC+CGG - chr4_4:52036127-52036146 Msa0687220:CDS 40.0%
TACAATCACCAGAAAGCTAC+CGG + chr4_4:52036149-52036168 None:intergenic 40.0%
TAACTGGAATGCTACCATGG+TGG + chr4_4:52033590-52033609 None:intergenic 45.0%
!! CAGCACCAAGTATTGGATTC+AGG + chr4_4:52033816-52033835 None:intergenic 45.0%
!! TCCAATACTTGGTGCTGTGT+TGG - chr4_4:52033819-52033838 Msa0687220:CDS 45.0%
TCCAACACAGCACCAAGTAT+TGG + chr4_4:52033823-52033842 None:intergenic 45.0%
TTTCCCCAGAATAATGGCAC+CGG + chr4_4:52034052-52034071 None:intergenic 45.0%
! TCTGGGGAAAACTAGTCTCT+CGG - chr4_4:52034062-52034081 Msa0687220:intron 45.0%
AACCAATGCAAATCCACCTC+TGG + chr4_4:52034133-52034152 None:intergenic 45.0%
GTGGAGTCTAAAAGTCCTTG+CGG - chr4_4:52034529-52034548 Msa0687220:intron 45.0%
TGGAGTCTAAAAGTCCTTGC+GGG - chr4_4:52034530-52034549 Msa0687220:intron 45.0%
CTTTGGATCAGCCATTTCAG+TGG - chr4_4:52034558-52034577 Msa0687220:intron 45.0%
TCATTGGGGACAGAAACTGA+TGG - chr4_4:52034601-52034620 Msa0687220:intron 45.0%
CACCTCGTCAAGATACTATC+GGG - chr4_4:52034713-52034732 Msa0687220:intron 45.0%
TACCCGATAGTATCTTGACG+AGG + chr4_4:52034718-52034737 None:intergenic 45.0%
! TTTTGCACAGGCCAATATGC+AGG - chr4_4:52034837-52034856 Msa0687220:CDS 45.0%
AGGACCATCTCAATGTGTTG+AGG - chr4_4:52035068-52035087 Msa0687220:intron 45.0%
CATAACACACACCCCTCAAT+TGG - chr4_4:52035112-52035131 Msa0687220:CDS 45.0%
! AAGACAAAGAGGTGCAACAG+TGG - chr4_4:52035262-52035281 Msa0687220:CDS 45.0%
! ACTTTGAAGAGGGTCCAGAA+CGG + chr4_4:52035318-52035337 None:intergenic 45.0%
ATCTCAGCTAGAGACTTCAC+AGG + chr4_4:52035413-52035432 None:intergenic 45.0%
CCCTATTCTAGTGTCATGTC+TGG - chr4_4:52035647-52035666 Msa0687220:intron 45.0%
CTCTGATGCTTCTCCAATGT+TGG - chr4_4:52035910-52035929 Msa0687220:CDS 45.0%
GCTTCTCCAATGTTGGCAAT+TGG - chr4_4:52035917-52035936 Msa0687220:CDS 45.0%
TCTCCAATGTTGGCAATTGG+AGG - chr4_4:52035920-52035939 Msa0687220:CDS 45.0%
CTCCAATGTTGGCAATTGGA+GGG - chr4_4:52035921-52035940 Msa0687220:CDS 45.0%
TACCCTCCAATTGCCAACAT+TGG + chr4_4:52035926-52035945 None:intergenic 45.0%
GTGACCGTTCGTTGCTTCAT+GGG - chr4_4:52033902-52033921 Msa0687220:CDS 50.0%
GGATCCCATGAAGCAACGAA+CGG + chr4_4:52033909-52033928 None:intergenic 50.0%
! TGGGATCCCTGTTTTGCTGA+AGG - chr4_4:52033921-52033940 Msa0687220:CDS 50.0%
!! GAAGCCGGTGCCATTATTCT+GGG - chr4_4:52034045-52034064 Msa0687220:intron 50.0%
!! AAGCCGGTGCCATTATTCTG+GGG - chr4_4:52034046-52034065 Msa0687220:intron 50.0%
! GGAAAACTAGTCTCTCGGAG+TGG - chr4_4:52034067-52034086 Msa0687220:intron 50.0%
! ACTAGTCTCTCGGAGTGGTA+TGG - chr4_4:52034072-52034091 Msa0687220:intron 50.0%
CTAGTCTCTCGGAGTGGTAT+GGG - chr4_4:52034073-52034092 Msa0687220:intron 50.0%
TAGTCTCTCGGAGTGGTATG+GGG - chr4_4:52034074-52034093 Msa0687220:intron 50.0%
CTAACACTGTGCCAGAAGCT+TGG - chr4_4:52034103-52034122 Msa0687220:intron 50.0%
CTACTAGTGAGTCCAACGGT+GGG + chr4_4:52034673-52034692 None:intergenic 50.0%
CACCGTTGGACTCACTAGTA+GGG - chr4_4:52034672-52034691 Msa0687220:intron 50.0%
AGCCCTACTAGTGAGTCCAA+CGG + chr4_4:52034677-52034696 None:intergenic 50.0%
! ACAAAGAGGTGCAACAGTGG+TGG - chr4_4:52035265-52035284 Msa0687220:intron 50.0%
! GTTCTGGACCCTCTTCAAAG+TGG - chr4_4:52035317-52035336 Msa0687220:intron 50.0%
!! TTGGATGCAGTGTTGGCCAT+AGG - chr4_4:52035887-52035906 Msa0687220:CDS 50.0%
!! TGGAGAAGCATCAGAGCCTA+TGG + chr4_4:52035906-52035925 None:intergenic 50.0%
CTTCGCGATCATATCCAGCT+GGG + chr4_4:52035964-52035983 None:intergenic 50.0%
GATCGCGAAGGAATGCCATT+TGG - chr4_4:52035974-52035993 Msa0687220:CDS 50.0%
TTGAGCAAGCTACCAGGACA+AGG - chr4_4:52036056-52036075 Msa0687220:CDS 50.0%
TGTGAATGAAAAGCGAGGGG+TGG + chr4_4:52036085-52036104 None:intergenic 50.0%
GAAAGCTACCGGTCAAGTCT+AGG + chr4_4:52036138-52036157 None:intergenic 50.0%
AGACTTGACCGGTAGCTTTC+TGG - chr4_4:52036138-52036157 Msa0687220:CDS 50.0%
TCTGCTTGATCTCGAGCGTC+AGG + chr4_4:52033853-52033872 None:intergenic 55.0%
CGCTCGAGATCAAGCAGACA+AGG - chr4_4:52033855-52033874 Msa0687220:CDS 55.0%
CGTGACCGTTCGTTGCTTCA+TGG - chr4_4:52033901-52033920 Msa0687220:CDS 55.0%
GAAACCACATGTGCGTCACG+TGG + chr4_4:52034015-52034034 None:intergenic 55.0%
!! GGAAGCCGGTGCCATTATTC+TGG - chr4_4:52034044-52034063 Msa0687220:intron 55.0%
! CGCCAGAGGTGGATTTGCAT+TGG - chr4_4:52034128-52034147 Msa0687220:intron 55.0%
! AGTCCTTGCGGGTCTAGCTT+TGG - chr4_4:52034541-52034560 Msa0687220:intron 55.0%
GATCCAAAGCTAGACCCGCA+AGG + chr4_4:52034547-52034566 None:intergenic 55.0%
CCTACTAGTGAGTCCAACGG+TGG + chr4_4:52034674-52034693 None:intergenic 55.0%
CCACCGTTGGACTCACTAGT+AGG - chr4_4:52034671-52034690 Msa0687220:intron 55.0%
GTTGGACTCACTAGTAGGGC+TGG - chr4_4:52034676-52034695 Msa0687220:intron 55.0%
CCAGCTGGGACAGTAATTGC+AGG + chr4_4:52035950-52035969 None:intergenic 55.0%
CCTGCAATTACTGTCCCAGC+TGG - chr4_4:52035947-52035966 Msa0687220:CDS 55.0%
CCTTCGCGATCATATCCAGC+TGG + chr4_4:52035965-52035984 None:intergenic 55.0%
CCAGCTGGATATGATCGCGA+AGG - chr4_4:52035962-52035981 Msa0687220:CDS 55.0%
GGTTCCACGTGACGCACATG+TGG - chr4_4:52034008-52034027 Msa0687220:CDS 60.0%
GTCGGAATCAAGCCCACCGT+TGG - chr4_4:52034658-52034677 Msa0687220:intron 60.0%
CCTCTGGCGCACCAAGCTTC+TGG + chr4_4:52034117-52034136 None:intergenic 65.0%
!! CCAGAAGCTTGGTGCGCCAG+AGG - chr4_4:52034114-52034133 Msa0687220:intron 65.0%
!! GAAGCTTGGTGCGCCAGAGG+TGG - chr4_4:52034117-52034136 Msa0687220:intron 65.0%
GAGGGGTGGCTTCCTTGTCC+TGG + chr4_4:52036071-52036090 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 52033581 52036222 52033581 ID=Msa0687220;Name=Msa0687220
chr4_4 mRNA 52033581 52036222 52033581 ID=Msa0687220-mRNA-1;Parent=Msa0687220;Name=Msa0687220-mRNA-1;_AED=0.03;_eAED=0.03;_QI=11|1|1|1|1|1|5|102|529
chr4_4 exon 52033581 52034057 52033581 ID=Msa0687220-mRNA-1:exon:13527;Parent=Msa0687220-mRNA-1
chr4_4 exon 52034340 52034538 52034340 ID=Msa0687220-mRNA-1:exon:13526;Parent=Msa0687220-mRNA-1
chr4_4 exon 52034714 52034956 52034714 ID=Msa0687220-mRNA-1:exon:13525;Parent=Msa0687220-mRNA-1
chr4_4 exon 52035069 52035283 52035069 ID=Msa0687220-mRNA-1:exon:13524;Parent=Msa0687220-mRNA-1
chr4_4 exon 52035654 52036222 52035654 ID=Msa0687220-mRNA-1:exon:13523;Parent=Msa0687220-mRNA-1
chr4_4 five_prime_UTR 52036212 52036222 52036212 ID=Msa0687220-mRNA-1:five_prime_utr;Parent=Msa0687220-mRNA-1
chr4_4 CDS 52035654 52036211 52035654 ID=Msa0687220-mRNA-1:cds;Parent=Msa0687220-mRNA-1
chr4_4 CDS 52035069 52035283 52035069 ID=Msa0687220-mRNA-1:cds;Parent=Msa0687220-mRNA-1
chr4_4 CDS 52034714 52034956 52034714 ID=Msa0687220-mRNA-1:cds;Parent=Msa0687220-mRNA-1
chr4_4 CDS 52034340 52034538 52034340 ID=Msa0687220-mRNA-1:cds;Parent=Msa0687220-mRNA-1
chr4_4 CDS 52033683 52034057 52033683 ID=Msa0687220-mRNA-1:cds;Parent=Msa0687220-mRNA-1
chr4_4 three_prime_UTR 52033581 52033682 52033581 ID=Msa0687220-mRNA-1:three_prime_utr;Parent=Msa0687220-mRNA-1
Gene Sequence

>Msa0687220

ATGGTAGCATTCCAGTTAGTTTCAACAAATAAAGAGATGGCAACAAGAAGCAAAGTTTGTATTTCTCTAATATTATTTGCAGTAGCATTTGTCAATGCAATAGATGAATGTTCAGATTTTGCAATCGAAGAATCAACCATAGAAGACATACAAGAAGCATTCACACTAAACAAACTCACTTCAAGACAGCTCGTTGACTTTTACTTACACAGAATCAAGGTCCTGAATCCAATACTTGGTGCTGTGTTGGAACTCAATCCTGACGCTCGAGATCAAGCAGACAAGGCTGATTGTGAGAGACGAGAAGATCGTGACCGTTCGTTGCTTCATGGGATCCCTGTTTTGCTGAAGGACAGTATTGCAACCTTTGATAAACTCAACACTTCAGCAGGTTCTTATGCATTGTTGGGATCGAAGGTTCCACGTGACGCACATGTGGTTTCGAAATTAAGGGAAGCCGGTGCCATTATTCTGGGGAAAACTAGTCTCTCGGAGTGGTATGGGGTTCGTTCTAACACTGTGCCAGAAGCTTGGTGCGCCAGAGGTGGATTTGCATTGAATCCTTATGTGGAGTCTAAAAGTCCTTGCGGGTCTAGCTTTGGATCAGCCATTTCAGTGGCAACTAACATGGTTGCAGTTTCATTGGGGACAGAAACTGATGGCTCTATTATCTGCCCAGCTGATCACAATTCAGTTGTCGGAATCAAGCCCACCGTTGGACTCACTAGTAGGGCTGGTGTCATACCAATTTCACCTCGTCAAGATACTATCGGGCCAATATGCAGGACAGTTTCAGATGCAGTTCATGTGCTTGATGTAATTGTTGGATTTGACCCAAGAGATTATGAAGCTACAAAATCAGCAGCTAAGTTTATACCTTCAGGTGGTTATAAGCAATTCCTCAATAAACAAGGTCTCAATGGAAAGAAAATAGGTGTTTTGAGGAATCCATTTTTGATTCACTATAAAGGATCCAATGTCACTTCCATCTTTGAGGACCATCTCAATGTGTTGAGACAAAGAGGTGCAACAGTGGTGGATAATTTGGAAGTAGAAAATTTAAGCACCGTTCTGGACCCTCTTCAAAGTGGTGAAATGATAACCTTACTTTCAGAATTCAAATTGTACATCAACAAATATCTGCAAGAGCTCACTTATTCTCCTGTGAAGTCTCTAGCTGAGATTATAGAATTCAACATCAACAACCCTATTTTAGAAAAGACTAATGAGTATGGGCAGGATTTTTTTATGGCATCAGAAATGACAAGTGGAATTGGAAAAGGTGAAATTGAAGCAATGAAGATGATGGAGCAGTTGTCAAAAAATGGGTTTGAGAGTTTGATAAAGAAGAATCAATTGGATGCAGTGTTGGCCATAGGCTCTGATGCTTCTCCAATGTTGGCAATTGGAGGGTATCCTGCAATTACTGTCCCAGCTGGATATGATCGCGAAGGAATGCCATTTGGAATCTGTTTTGGTGGGTTAAAGGGAACTGAGTCAAAACTGATTGAGATTGCTTATGATTTTGAGCAAGCTACCAGGACAAGGAAGCCACCCCTCGCTTTTCATTCACACATGAAAAAAATTTAA

Protein sequence

>Msa0687220

MVAFQLVSTNKEMATRSKVCISLILFAVAFVNAIDECSDFAIEESTIEDIQEAFTLNKLTSRQLVDFYLHRIKVLNPILGAVLELNPDARDQADKADCERREDRDRSLLHGIPVLLKDSIATFDKLNTSAGSYALLGSKVPRDAHVVSKLREAGAIILGKTSLSEWYGVRSNTVPEAWCARGGFALNPYVESKSPCGSSFGSAISVATNMVAVSLGTETDGSIICPADHNSVVGIKPTVGLTSRAGVIPISPRQDTIGPICRTVSDAVHVLDVIVGFDPRDYEATKSAAKFIPSGGYKQFLNKQGLNGKKIGVLRNPFLIHYKGSNVTSIFEDHLNVLRQRGATVVDNLEVENLSTVLDPLQSGEMITLLSEFKLYINKYLQELTYSPVKSLAEIIEFNINNPILEKTNEYGQDFFMASEMTSGIGKGEIEAMKMMEQLSKNGFESLIKKNQLDAVLAIGSDASPMLAIGGYPAITVPAGYDREGMPFGICFGGLKGTESKLIEIAYDFEQATRTRKPPLAFHSHMKKI*