Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399460 | XP_013451577.1 | 96.350 | 548 | 16 | 1 | 1 | 544 | 1 | 548 | 0.0 | 1087 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399460 | sp|Q5XVI1|SINE1_ARATH | 60.081 | 491 | 160 | 11 | 1 | 474 | 1 | 472 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399460 | A0A072UIF3 | 96.350 | 548 | 16 | 1 | 1 | 544 | 1 | 548 | 0.0 | 1087 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019930 | Msa1399460 | 0.810543 | 1.094026e-50 | -8.615850e-47 |
| Msa0032980 | Msa1399460 | 0.821396 | 4.129452e-53 | -8.615850e-47 |
| Msa0037740 | Msa1399460 | 0.823540 | 1.311397e-53 | -8.615850e-47 |
| Msa0050150 | Msa1399460 | 0.800234 | 1.585838e-48 | -8.615850e-47 |
| Msa0090440 | Msa1399460 | 0.836732 | 7.873679e-57 | -8.615850e-47 |
| Msa0091350 | Msa1399460 | 0.822330 | 2.509417e-53 | -8.615850e-47 |
| Msa0115550 | Msa1399460 | 0.810729 | 9.971913e-51 | -8.615850e-47 |
| Msa1361930 | Msa1399460 | 0.813549 | 2.420139e-51 | -8.615850e-47 |
| Msa1399460 | Msa1426320 | 0.816821 | 4.539090e-52 | -8.615850e-47 |
| Msa1399460 | Msa1442260 | 0.817156 | 3.816885e-52 | -8.615850e-47 |
| Msa0607800 | Msa1399460 | 0.829780 | 4.250577e-55 | -8.615850e-47 |
| Msa0615630 | Msa1399460 | 0.830934 | 2.220461e-55 | -8.615850e-47 |
| Msa0620500 | Msa1399460 | 0.842426 | 2.604880e-58 | -8.615850e-47 |
| Msa0622920 | Msa1399460 | 0.829556 | 4.818486e-55 | -8.615850e-47 |
| Msa0647050 | Msa1399460 | 0.819086 | 1.396970e-52 | -8.615850e-47 |
| Msa0648040 | Msa1399460 | 0.827360 | 1.633710e-54 | -8.615850e-47 |
| Msa0648760 | Msa1399460 | 0.808027 | 3.788632e-50 | -8.615850e-47 |
| Msa0659150 | Msa1399460 | 0.817535 | 3.136529e-52 | -8.615850e-47 |
| Msa0668900 | Msa1399460 | 0.800672 | 1.291527e-48 | -8.615850e-47 |
| Msa0688380 | Msa1399460 | 0.806483 | 8.049794e-50 | -8.615850e-47 |
| Msa0690740 | Msa1399460 | 0.831807 | 1.353950e-55 | -8.615850e-47 |
| Msa0698730 | Msa1399460 | 0.848142 | 7.398782e-60 | -8.615850e-47 |
| Msa0714520 | Msa1399460 | 0.811314 | 7.450167e-51 | -8.615850e-47 |
| Msa0717900 | Msa1399460 | 0.808555 | 2.923644e-50 | -8.615850e-47 |
| Msa0743440 | Msa1399460 | 0.806608 | 7.572594e-50 | -8.615850e-47 |
| Msa0745720 | Msa1399460 | 0.803392 | 3.563207e-49 | -8.615850e-47 |
| Msa0816080 | Msa1399460 | 0.805067 | 1.596506e-49 | -8.615850e-47 |
| Msa0127340 | Msa1399460 | 0.811671 | 6.229517e-51 | -8.615850e-47 |
| Msa0127680 | Msa1399460 | 0.806127 | 9.566803e-50 | -8.615850e-47 |
| Msa0137920 | Msa1399460 | 0.812819 | 3.499533e-51 | -8.615850e-47 |
| Msa0165830 | Msa1399460 | 0.823827 | 1.123100e-53 | -8.615850e-47 |
| Msa0190730 | Msa1399460 | 0.810040 | 1.404728e-50 | -8.615850e-47 |
| Msa0233020 | Msa1399460 | 0.828763 | 7.501913e-55 | -8.615850e-47 |
| Msa1254540 | Msa1399460 | 0.822882 | 1.867714e-53 | -8.615850e-47 |
| Msa1263780 | Msa1399460 | 0.809271 | 2.055065e-50 | -8.615850e-47 |
| Msa1294460 | Msa1399460 | 0.803961 | 2.715548e-49 | -8.615850e-47 |
| Msa1294790 | Msa1399460 | 0.800449 | 1.433959e-48 | -8.615850e-47 |
| Msa1301820 | Msa1399460 | 0.800478 | 1.414396e-48 | -8.615850e-47 |
| Msa1305780 | Msa1399460 | 0.808919 | 2.444242e-50 | -8.615850e-47 |
| Msa1305920 | Msa1399460 | 0.814435 | 1.542948e-51 | -8.615850e-47 |
| Msa1332950 | Msa1399460 | 0.818312 | 2.093311e-52 | -8.615850e-47 |
| Msa1339170 | Msa1399460 | 0.846459 | 2.143589e-59 | -8.615850e-47 |
| Msa0367520 | Msa1399460 | 0.827704 | 1.350405e-54 | -8.615850e-47 |
| Msa0373590 | Msa1399460 | 0.826765 | 2.267085e-54 | -8.615850e-47 |
| Msa0377710 | Msa1399460 | 0.807709 | 4.428015e-50 | -8.615850e-47 |
| Msa0421130 | Msa1399460 | 0.805868 | 1.084614e-49 | -8.615850e-47 |
| Msa0421750 | Msa1399460 | 0.809475 | 1.857445e-50 | -8.615850e-47 |
| Msa0443410 | Msa1399460 | 0.807197 | 5.685113e-50 | -8.615850e-47 |
| Msa0456670 | Msa1399460 | 0.820040 | 8.462579e-53 | -8.615850e-47 |
| Msa0466880 | Msa1399460 | 0.805970 | 1.032208e-49 | -8.615850e-47 |
| Msa0468700 | Msa1399460 | 0.822591 | 2.182658e-53 | -8.615850e-47 |
| Msa1008670 | Msa1399460 | 0.847087 | 1.443667e-59 | -8.615850e-47 |
| Msa1033920 | Msa1399460 | 0.823472 | 1.360162e-53 | -8.615850e-47 |
| Msa1035650 | Msa1399460 | 0.808187 | 3.502903e-50 | -8.615850e-47 |
| Msa1042880 | Msa1399460 | 0.800415 | 1.456664e-48 | -8.615850e-47 |
| Msa1076020 | Msa1399460 | 0.823982 | 1.032753e-53 | -8.615850e-47 |
| Msa1082380 | Msa1399460 | 0.811583 | 6.510561e-51 | -8.615850e-47 |
| Msa0272260 | Msa1399460 | 0.813009 | 3.179184e-51 | -8.615850e-47 |
| Msa1127280 | Msa1399460 | 0.816809 | 4.566456e-52 | -8.615850e-47 |
| Msa1132530 | Msa1399460 | 0.812117 | 4.982183e-51 | -8.615850e-47 |
| Msa1148630 | Msa1399460 | 0.802606 | 5.180530e-49 | -8.615850e-47 |
| Msa1162880 | Msa1399460 | 0.807796 | 4.242192e-50 | -8.615850e-47 |
| Msa1163180 | Msa1399460 | 0.801407 | 9.137762e-49 | -8.615850e-47 |
| Msa1165480 | Msa1399460 | 0.819019 | 1.446690e-52 | -8.615850e-47 |
| Msa1213830 | Msa1399460 | 0.833342 | 5.634096e-56 | -8.615850e-47 |
| Msa1214350 | Msa1399460 | 0.834965 | 2.208610e-56 | -8.615850e-47 |
| Msa1215980 | Msa1399460 | 0.841086 | 5.879374e-58 | -8.615850e-47 |
| Msa1218820 | Msa1399460 | 0.812550 | 4.007581e-51 | -8.615850e-47 |
| Msa0514020 | Msa1399460 | 0.800960 | 1.127673e-48 | -8.615850e-47 |
| Msa0514580 | Msa1399460 | 0.824587 | 7.445232e-54 | -8.615850e-47 |
| Msa0520870 | Msa1399460 | 0.803747 | 3.008348e-49 | -8.615850e-47 |
| Msa0550590 | Msa1399460 | 0.826705 | 2.343299e-54 | -8.615850e-47 |
| Msa0554300 | Msa1399460 | 0.804711 | 1.895087e-49 | -8.615850e-47 |
| Msa0561560 | Msa1399460 | 0.826011 | 3.427706e-54 | -8.615850e-47 |
| Msa0577280 | Msa1399460 | 0.827663 | 1.381332e-54 | -8.615850e-47 |
| Msa0577330 | Msa1399460 | 0.832729 | 8.004777e-56 | -8.615850e-47 |
| Msa0590200 | Msa1399460 | 0.810430 | 1.157452e-50 | -8.615850e-47 |
| Msa0851300 | Msa1399460 | 0.821935 | 3.098025e-53 | -8.615850e-47 |
| Msa0867110 | Msa1399460 | 0.802193 | 6.301472e-49 | -8.615850e-47 |
| Msa0931310 | Msa1399460 | 0.843767 | 1.144304e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399460 | MtrunA17_Chr6g0461561 | 96.350 | 548 | 16 | 1 | 1 | 544 | 1 | 548 | 0.0 | 1087 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399460 | AT1G54385.2 | 60.081 | 491 | 160 | 11 | 1 | 474 | 1 | 472 | 0.0 | 535 |
| Msa1399460 | AT1G54385.1 | 60.081 | 491 | 160 | 11 | 1 | 474 | 1 | 472 | 0.0 | 535 |
| Msa1399460 | AT1G54385.3 | 60.081 | 491 | 160 | 11 | 1 | 474 | 1 | 472 | 0.0 | 535 |
| Msa1399460 | AT3G03970.1 | 51.351 | 370 | 164 | 7 | 1 | 359 | 1 | 365 | 1.72e-111 | 343 |
| Msa1399460 | AT3G03970.4 | 51.351 | 370 | 164 | 7 | 1 | 359 | 1 | 365 | 1.72e-111 | 343 |
| Msa1399460 | AT3G03970.2 | 51.351 | 370 | 164 | 7 | 1 | 359 | 1 | 365 | 1.72e-111 | 343 |
| Msa1399460 | AT3G03970.6 | 51.351 | 370 | 164 | 7 | 1 | 359 | 1 | 365 | 1.72e-111 | 343 |
| Msa1399460 | AT3G03970.3 | 51.351 | 370 | 164 | 7 | 1 | 359 | 1 | 365 | 1.72e-111 | 343 |
| Msa1399460 | AT3G03970.5 | 51.351 | 370 | 164 | 7 | 1 | 359 | 1 | 365 | 1.72e-111 | 343 |
Find 121 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCCTTGTCTAGGACTTC+TGG | 0.186852 | tig0022357:-101676 | None:intergenic |
| CTCTTGTTGATTCGGATAAT+TGG | 0.194402 | tig0022357:+100890 | Msa1399460:CDS |
| AAAATCTCTCCTACTAAAAT+TGG | 0.218674 | tig0022357:-101349 | None:intergenic |
| CTTCTGATGAAATGGTTAAT+AGG | 0.231433 | tig0022357:+100920 | Msa1399460:CDS |
| AGGACTTGTGTTGGTACTTC+TGG | 0.242409 | tig0022357:-101700 | None:intergenic |
| CGGTGCAGCTCTTTGCTTGA+AGG | 0.266619 | tig0022357:+100867 | Msa1399460:CDS |
| TCTTGTTGTGTTGATTCTTA+TGG | 0.267290 | tig0022357:+100353 | Msa1399460:five_prime_UTR |
| AAGCTTTGGAGCCTTGAAAT+TGG | 0.286109 | tig0022357:+101540 | Msa1399460:CDS |
| CGTGATTTGCTAAACCATTC+TGG | 0.288816 | tig0022357:-102217 | None:intergenic |
| TTCTGATGAAATGGTTAATA+GGG | 0.294905 | tig0022357:+100921 | Msa1399460:CDS |
| AGAGAGCGAATGAGCCTCTT+TGG | 0.302508 | tig0022357:-102083 | None:intergenic |
| AAAATCTTATGTGAAAGATT+TGG | 0.307204 | tig0022357:+100504 | Msa1399460:CDS |
| CGAAGCTAAAGTCTGAATTA+TGG | 0.319489 | tig0022357:-100677 | None:intergenic |
| GAAGTTCTTGCTAGGGTTCA+TGG | 0.320996 | tig0022357:+100616 | Msa1399460:CDS |
| ATGGATGGAGATAGTTCTTC+AGG | 0.327702 | tig0022357:+101372 | Msa1399460:CDS |
| ATAGACTGACATGTTGAAAT+AGG | 0.349826 | tig0022357:-101480 | None:intergenic |
| ATTCCTTGTCTAGGACTTCT+GGG | 0.359079 | tig0022357:-101675 | None:intergenic |
| GCAGTGCCAGTCCGATAAAA+TGG | 0.359720 | tig0022357:+101224 | Msa1399460:CDS |
| TTCTTATCCTCCGGCATCGT+TGG | 0.368225 | tig0022357:-100772 | None:intergenic |
| GTTCCAGCTGTTGCTAGATA+TGG | 0.370822 | tig0022357:+100742 | Msa1399460:CDS |
| CTAACGCCACAGCAACATTC+TGG | 0.372076 | tig0022357:-100948 | None:intergenic |
| TACTCAGACTAATCTGCATA+TGG | 0.372875 | tig0022357:+100981 | Msa1399460:CDS |
| CTTGAAGGCTCTTGTTGATT+CGG | 0.374085 | tig0022357:+100882 | Msa1399460:CDS |
| GACTAATCTGCATATGGGTT+TGG | 0.392794 | tig0022357:+100987 | Msa1399460:CDS |
| AAGGAAACCGGTACTGTGTC+TGG | 0.401751 | tig0022357:+100571 | Msa1399460:CDS |
| GCTCGACTGCTCATACAATC+TGG | 0.402952 | tig0022357:+101054 | Msa1399460:CDS |
| CATCAACCCCTCCAATTTCA+AGG | 0.414561 | tig0022357:-101551 | None:intergenic |
| AAATGTCAGTGGAGAGTCTA+TGG | 0.416004 | tig0022357:+101089 | Msa1399460:CDS |
| AAATAGCTGAAGAATGGAAC+AGG | 0.417499 | tig0022357:+100297 | None:intergenic |
| TCAGCAATGGATCCATATCC+AGG | 0.425319 | tig0022357:-101453 | None:intergenic |
| TGCATGATACTGTCAATCAT+TGG | 0.425708 | tig0022357:-100652 | None:intergenic |
| AAGTTCTTGCTAGGGTTCAT+GGG | 0.431541 | tig0022357:+100617 | Msa1399460:CDS |
| GATAAAATGGCGTTCATCAA+AGG | 0.434224 | tig0022357:+101237 | Msa1399460:CDS |
| AAGAGTCCTGCTTCGGTGAC+GGG | 0.435698 | tig0022357:+101324 | Msa1399460:CDS |
| AATGTTGCTGTGGCGTTAGA+AGG | 0.439725 | tig0022357:+100952 | Msa1399460:CDS |
| ATATGTTTCTTCTTATCCTC+CGG | 0.443407 | tig0022357:-100781 | None:intergenic |
| TGATTCGCTCACGAGTTCTC+TGG | 0.446860 | tig0022357:+100831 | Msa1399460:CDS |
| GCGGTTTGCTTCTGATGAAA+TGG | 0.451524 | tig0022357:+100912 | Msa1399460:CDS |
| CGCTGTATGAAGTTCTTGCT+AGG | 0.452007 | tig0022357:+100608 | Msa1399460:CDS |
| CAGACTTTAGCTTCGAGTGC+AGG | 0.455292 | tig0022357:+100685 | Msa1399460:CDS |
| CTCTTCAACAAGCTTGTTCG+AGG | 0.456204 | tig0022357:+100716 | Msa1399460:CDS |
| GGAGTGTCAATAGGAAGCTT+TGG | 0.462265 | tig0022357:+101526 | Msa1399460:CDS |
| TTGGATCTAAACACTTCATC+AGG | 0.471635 | tig0022357:-101158 | None:intergenic |
| TTGGAACCCGTCACCGAAGC+AGG | 0.476986 | tig0022357:-101330 | None:intergenic |
| TGCTCAAGTTTCTGAGACCA+AGG | 0.480477 | tig0022357:+100552 | Msa1399460:CDS |
| CTTCTGGATATTCCTTGTCT+AGG | 0.481467 | tig0022357:-101684 | None:intergenic |
| AGACACAGTACCGGTTTCCT+TGG | 0.485208 | tig0022357:-100569 | None:intergenic |
| ATCCATACCATTTCTCTCCT+CGG | 0.485625 | tig0022357:-101604 | None:intergenic |
| CTTTGGAGCCTTGAAATTGG+AGG | 0.488173 | tig0022357:+101543 | Msa1399460:CDS |
| GCATGATACTGTCAATCATT+GGG | 0.489925 | tig0022357:-100651 | None:intergenic |
| GAAACTTGAGCAAGAAACAT+AGG | 0.490263 | tig0022357:-100541 | None:intergenic |
| TATCATCAGGCAATATTGAC+TGG | 0.490268 | tig0022357:+102151 | Msa1399460:CDS |
| CAATCGGAACTCTCATCGGT+TGG | 0.490836 | tig0022357:-102113 | None:intergenic |
| GAAGAGTCCTGCTTCGGTGA+CGG | 0.491134 | tig0022357:+101323 | Msa1399460:CDS |
| AAGTATGACGGCAAAGAGTA+CGG | 0.497308 | tig0022357:+102225 | Msa1399460:CDS |
| TTGTTGATTCGGATAATTGG+CGG | 0.501457 | tig0022357:+100893 | Msa1399460:CDS |
| AGGTGAAAATAGCTGAAGAA+TGG | 0.502248 | tig0022357:+100291 | None:intergenic |
| GTTTCTGAGACCAAGGAAAC+CGG | 0.510693 | tig0022357:+100559 | Msa1399460:CDS |
| AATCGGAACTCTCATCGGTT+GGG | 0.513575 | tig0022357:-102112 | None:intergenic |
| CGAACAAGTAATTGAGGAGA+TGG | 0.515659 | tig0022357:+101200 | Msa1399460:CDS |
| TATTCTAAATATGACCAGAA+TGG | 0.516967 | tig0022357:+102186 | Msa1399460:CDS |
| CTCGACTGCTCATACAATCT+GGG | 0.517735 | tig0022357:+101055 | Msa1399460:CDS |
| AACGATCAAAGAGTTATGCT+TGG | 0.519887 | tig0022357:-101022 | None:intergenic |
| TCAAGTGCCGAGGAGAGAAA+TGG | 0.521681 | tig0022357:+101597 | Msa1399460:CDS |
| GCTGTATGAAGTTCTTGCTA+GGG | 0.522921 | tig0022357:+100609 | Msa1399460:CDS |
| AGGCATGAAGAGTCCTGCTT+CGG | 0.525449 | tig0022357:+101317 | Msa1399460:CDS |
| ACCTCCGAGAAAATACTCCT+TGG | 0.526309 | tig0022357:-101177 | None:intergenic |
| ATTCACGTAGGAGTGTCAAT+AGG | 0.526456 | tig0022357:+101517 | Msa1399460:CDS |
| ATTCCATATCTAGCAACAGC+TGG | 0.528406 | tig0022357:-100745 | None:intergenic |
| AGACTCTTGAACCTTCGAAT+CGG | 0.530274 | tig0022357:-102146 | None:intergenic |
| TGCCGAGGAGAGAAATGGTA+TGG | 0.538874 | tig0022357:+101602 | Msa1399460:CDS |
| GGAGATAGTTCTTCAGGTGA+TGG | 0.540688 | tig0022357:+101378 | Msa1399460:CDS |
| TGGAATTGATCCAACGATGC+CGG | 0.540945 | tig0022357:+100762 | Msa1399460:CDS |
| GTGAATCAGATGTGGGAGTA+CGG | 0.541970 | tig0022357:-101404 | None:intergenic |
| TGTTGTGTTGATTCTTATGG+TGG | 0.542214 | tig0022357:+100356 | Msa1399460:five_prime_UTR |
| TGCGGTGACGGACAGTATCA+AGG | 0.545775 | tig0022357:+102255 | Msa1399460:CDS |
| AGGTTCAAGAGTCTATCATC+AGG | 0.546445 | tig0022357:+102138 | Msa1399460:CDS |
| CTCTGGTTATCAGCATCAGC+AGG | 0.547461 | tig0022357:-102329 | None:intergenic |
| TTTGGAGCCTTGAAATTGGA+GGG | 0.548124 | tig0022357:+101544 | Msa1399460:CDS |
| AGAACAATCGGAACTCTCAT+CGG | 0.550480 | tig0022357:-102117 | None:intergenic |
| AGACTTTAGCTTCGAGTGCA+GGG | 0.551485 | tig0022357:+100686 | Msa1399460:CDS |
| TACGGAAGCTCATGCGGTGA+CGG | 0.553418 | tig0022357:+102243 | Msa1399460:CDS |
| CTCGAACAAGCTTGTTGAAG+AGG | 0.558983 | tig0022357:-100715 | None:intergenic |
| TGATGAAGTGTTTAGATCCA+AGG | 0.560364 | tig0022357:+101160 | Msa1399460:CDS |
| GCTGTAGTTCAACAATGGGA+AGG | 0.560642 | tig0022357:+100401 | Msa1399460:exon |
| TTCCTTGTCTAGGACTTCTG+GGG | 0.581179 | tig0022357:-101674 | None:intergenic |
| ATGGATCACACGTTTCTGAA+TGG | 0.582838 | tig0022357:+101621 | Msa1399460:CDS |
| ACTCAGACTAATCTGCATAT+GGG | 0.583073 | tig0022357:+100982 | Msa1399460:CDS |
| TCGAACAAGCTTGTTGAAGA+GGG | 0.583523 | tig0022357:-100714 | None:intergenic |
| AGGGGTTGATGTGTCTCTCA+AGG | 0.587896 | tig0022357:+101563 | Msa1399460:CDS |
| TCTCTGGATAGTTTGAGTTG+CGG | 0.589290 | tig0022357:+100847 | Msa1399460:CDS |
| TCAAGCTCTCTTCGTAACAC+AGG | 0.592102 | tig0022357:-100433 | None:intergenic |
| TCATATTTAGAATAAGCTGA+TGG | 0.595918 | tig0022357:-102194 | None:intergenic |
| GAATTCTCCAGACACAGTAC+CGG | 0.604514 | tig0022357:-100578 | None:intergenic |
| GTCAGTGGAGAGTCTATGGA+TGG | 0.608577 | tig0022357:+101093 | Msa1399460:CDS |
| GTTGATGTGTCTCTCAAGGA+CGG | 0.617613 | tig0022357:+101567 | Msa1399460:CDS |
| GACTCTGGTGAATCAGATGT+GGG | 0.622726 | tig0022357:-101411 | None:intergenic |
| GATCACACGTTTCTGAATGG+TGG | 0.627318 | tig0022357:+101624 | Msa1399460:CDS |
| CTCGTGAGCGAATCAGATAG+AGG | 0.628566 | tig0022357:-100823 | None:intergenic |
| TCTTCAACAAGCTTGTTCGA+GGG | 0.630695 | tig0022357:+100717 | Msa1399460:CDS |
| TTGGAGCCTTGAAATTGGAG+GGG | 0.631969 | tig0022357:+101545 | Msa1399460:CDS |
| GGAGGTCGAACAAGTAATTG+AGG | 0.633070 | tig0022357:+101194 | Msa1399460:CDS |
| GGTTATCAGCATCAGCAGGA+AGG | 0.633093 | tig0022357:-102325 | None:intergenic |
| AAAGAGTACGGAAGCTCATG+CGG | 0.633751 | tig0022357:+102237 | Msa1399460:CDS |
| AGCATCAGCAGGAAGGTCGT+CGG | 0.633798 | tig0022357:-102318 | None:intergenic |
| GCAAATCACGACAAGTATGA+CGG | 0.635849 | tig0022357:+102213 | Msa1399460:CDS |
| CGGTCTGTTCTCAAGTGCCG+AGG | 0.639180 | tig0022357:+101587 | Msa1399460:CDS |
| CAGCAATGGATCCATATCCA+GGG | 0.647605 | tig0022357:-101452 | None:intergenic |
| AGTTCTTGCTAGGGTTCATG+GGG | 0.651288 | tig0022357:+100618 | Msa1399460:CDS |
| TGACTCTGGTGAATCAGATG+TGG | 0.654691 | tig0022357:-101412 | None:intergenic |
| TGAAATAGGAGAATCAGCAA+TGG | 0.662597 | tig0022357:-101466 | None:intergenic |
| CTGCTGATGCTGATAACCAG+AGG | 0.662905 | tig0022357:+102313 | Msa1399460:CDS |
| ATAATTTGAACTATTCACGT+AGG | 0.665673 | tig0022357:+101505 | Msa1399460:CDS |
| TGGATGGTAATTCTCAAAAG+CGG | 0.670306 | tig0022357:+101109 | Msa1399460:CDS |
| ACTTACGAGAGGACTTGTGT+TGG | 0.671817 | tig0022357:-101709 | None:intergenic |
| ATCCCCAGAAGTCCTAGACA+AGG | 0.678682 | tig0022357:+101672 | Msa1399460:CDS |
| AATTGATCCAACGATGCCGG+AGG | 0.688811 | tig0022357:+100765 | Msa1399460:CDS |
| GGTTTGCCAGAATGTTGCTG+TGG | 0.695386 | tig0022357:+100942 | Msa1399460:CDS |
| AATAGCTGAAGAATGGAACA+GGG | 0.696637 | tig0022357:+100298 | None:intergenic |
| GAATGGTGGAGATTTAACTG+AGG | 0.727777 | tig0022357:+101638 | Msa1399460:CDS |
| GGTGACGGACAGTATCAAGG+AGG | 0.795781 | tig0022357:+102258 | Msa1399460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATTTCATGAATTAA+TGG | - | tig0022357:101891-101910 | None:intergenic | 10.0% |
| !! | ATAATTATTTCATGAATTAA+TGG | - | tig0022357:101891-101910 | None:intergenic | 10.0% |
| !! | AAAATCTTATGTGAAAGATT+TGG | + | tig0022357:100504-100523 | Msa1399460:CDS | 20.0% |
| !! | AAATCAAATAATGTCGAATA+GGG | - | tig0022357:101752-101771 | None:intergenic | 20.0% |
| !! | TAAATCAAATAATGTCGAAT+AGG | - | tig0022357:101753-101772 | None:intergenic | 20.0% |
| !! | TCAAGTTTCAATAAACAAAA+AGG | - | tig0022357:101973-101992 | None:intergenic | 20.0% |
| !! | AAAATCTTATGTGAAAGATT+TGG | + | tig0022357:100504-100523 | Msa1399460:CDS | 20.0% |
| !! | AAATCAAATAATGTCGAATA+GGG | - | tig0022357:101752-101771 | None:intergenic | 20.0% |
| !! | TAAATCAAATAATGTCGAAT+AGG | - | tig0022357:101753-101772 | None:intergenic | 20.0% |
| !! | TCAAGTTTCAATAAACAAAA+AGG | - | tig0022357:101973-101992 | None:intergenic | 20.0% |
| !! | ATGTGAAAGATTTGGATTTT+AGG | + | tig0022357:100512-100531 | Msa1399460:CDS | 25.0% |
| !! | TGTGAAAGATTTGGATTTTA+GGG | + | tig0022357:100513-100532 | Msa1399460:CDS | 25.0% |
| ! | TTCTGATGAAATGGTTAATA+GGG | + | tig0022357:100921-100940 | Msa1399460:CDS | 25.0% |
| ! | AAAATCTCTCCTACTAAAAT+TGG | - | tig0022357:101352-101371 | None:intergenic | 25.0% |
| !! | TTTTAGTAGGAGAGATTTTA+TGG | + | tig0022357:101353-101372 | Msa1399460:CDS | 25.0% |
| ! | ATAATTTGAACTATTCACGT+AGG | + | tig0022357:101505-101524 | Msa1399460:CDS | 25.0% |
| !! | GTTAGTGTTTCTTTTTGTTA+TGG | + | tig0022357:101922-101941 | Msa1399460:intron | 25.0% |
| !! | TCATATTTAGAATAAGCTGA+TGG | - | tig0022357:102180-102199 | None:intergenic | 25.0% |
| ! | TATTCTAAATATGACCAGAA+TGG | + | tig0022357:102186-102205 | Msa1399460:CDS | 25.0% |
| !! | ATGTGAAAGATTTGGATTTT+AGG | + | tig0022357:100512-100531 | Msa1399460:CDS | 25.0% |
| !! | TGTGAAAGATTTGGATTTTA+GGG | + | tig0022357:100513-100532 | Msa1399460:CDS | 25.0% |
| ! | TTCTGATGAAATGGTTAATA+GGG | + | tig0022357:100921-100940 | Msa1399460:CDS | 25.0% |
| ! | AAAATCTCTCCTACTAAAAT+TGG | - | tig0022357:101352-101371 | None:intergenic | 25.0% |
| !! | TTTTAGTAGGAGAGATTTTA+TGG | + | tig0022357:101353-101372 | Msa1399460:CDS | 25.0% |
| ! | ATAATTTGAACTATTCACGT+AGG | + | tig0022357:101505-101524 | Msa1399460:CDS | 25.0% |
| !! | GTTAGTGTTTCTTTTTGTTA+TGG | + | tig0022357:101922-101941 | Msa1399460:intron | 25.0% |
| !! | TCATATTTAGAATAAGCTGA+TGG | - | tig0022357:102180-102199 | None:intergenic | 25.0% |
| ! | TATTCTAAATATGACCAGAA+TGG | + | tig0022357:102186-102205 | Msa1399460:CDS | 25.0% |
| !! | TCTTGTTGTGTTGATTCTTA+TGG | + | tig0022357:100353-100372 | Msa1399460:five_prime_UTR | 30.0% |
| !! | TTTTTGCTGTAGTTCAACAA+TGG | + | tig0022357:100396-100415 | Msa1399460:exon | 30.0% |
| !! | TTTTGCTGTAGTTCAACAAT+GGG | + | tig0022357:100397-100416 | Msa1399460:exon | 30.0% |
| ATATGTTTCTTCTTATCCTC+CGG | - | tig0022357:100784-100803 | None:intergenic | 30.0% | |
| CTTCTGATGAAATGGTTAAT+AGG | + | tig0022357:100920-100939 | Msa1399460:CDS | 30.0% | |
| !! | TTTGATGAACGCCATTTTAT+CGG | - | tig0022357:101238-101257 | None:intergenic | 30.0% |
| ATAGACTGACATGTTGAAAT+AGG | - | tig0022357:101483-101502 | None:intergenic | 30.0% | |
| !! | AATCGGTTTTTCAGAACAAT+CGG | - | tig0022357:102115-102134 | None:intergenic | 30.0% |
| !! | TCTTGTTGTGTTGATTCTTA+TGG | + | tig0022357:100353-100372 | Msa1399460:five_prime_UTR | 30.0% |
| !! | TTTTTGCTGTAGTTCAACAA+TGG | + | tig0022357:100396-100415 | Msa1399460:exon | 30.0% |
| !! | TTTTGCTGTAGTTCAACAAT+GGG | + | tig0022357:100397-100416 | Msa1399460:exon | 30.0% |
| ATATGTTTCTTCTTATCCTC+CGG | - | tig0022357:100784-100803 | None:intergenic | 30.0% | |
| CTTCTGATGAAATGGTTAAT+AGG | + | tig0022357:100920-100939 | Msa1399460:CDS | 30.0% | |
| !! | TTTGATGAACGCCATTTTAT+CGG | - | tig0022357:101238-101257 | None:intergenic | 30.0% |
| ATAGACTGACATGTTGAAAT+AGG | - | tig0022357:101483-101502 | None:intergenic | 30.0% | |
| !! | AATCGGTTTTTCAGAACAAT+CGG | - | tig0022357:102115-102134 | None:intergenic | 30.0% |
| !! | TGTTGTGTTGATTCTTATGG+TGG | + | tig0022357:100356-100375 | Msa1399460:five_prime_UTR | 35.0% |
| GAAACTTGAGCAAGAAACAT+AGG | - | tig0022357:100544-100563 | None:intergenic | 35.0% | |
| GCATGATACTGTCAATCATT+GGG | - | tig0022357:100654-100673 | None:intergenic | 35.0% | |
| TGCATGATACTGTCAATCAT+TGG | - | tig0022357:100655-100674 | None:intergenic | 35.0% | |
| CGAAGCTAAAGTCTGAATTA+TGG | - | tig0022357:100680-100699 | None:intergenic | 35.0% | |
| !! | CTCTTGTTGATTCGGATAAT+TGG | + | tig0022357:100890-100909 | Msa1399460:CDS | 35.0% |
| !! | TTGTTGATTCGGATAATTGG+CGG | + | tig0022357:100893-100912 | Msa1399460:CDS | 35.0% |
| TACTCAGACTAATCTGCATA+TGG | + | tig0022357:100981-101000 | Msa1399460:CDS | 35.0% | |
| ACTCAGACTAATCTGCATAT+GGG | + | tig0022357:100982-101001 | Msa1399460:CDS | 35.0% | |
| AACGATCAAAGAGTTATGCT+TGG | - | tig0022357:101025-101044 | None:intergenic | 35.0% | |
| TGGATGGTAATTCTCAAAAG+CGG | + | tig0022357:101109-101128 | Msa1399460:CDS | 35.0% | |
| TTGGATCTAAACACTTCATC+AGG | - | tig0022357:101161-101180 | None:intergenic | 35.0% | |
| ! | TGATGAAGTGTTTAGATCCA+AGG | + | tig0022357:101160-101179 | Msa1399460:CDS | 35.0% |
| !!! | AGATCCAAGGAGTATTTTCT+CGG | + | tig0022357:101173-101192 | Msa1399460:CDS | 35.0% |
| GATAAAATGGCGTTCATCAA+AGG | + | tig0022357:101237-101256 | Msa1399460:CDS | 35.0% | |
| ! | AGTAGGAGAGATTTTATGGA+TGG | + | tig0022357:101357-101376 | Msa1399460:CDS | 35.0% |
| TGAAATAGGAGAATCAGCAA+TGG | - | tig0022357:101469-101488 | None:intergenic | 35.0% | |
| ! | ATATTTGAGACACTTACGAG+AGG | - | tig0022357:101723-101742 | None:intergenic | 35.0% |
| GTGATCTCTGATAACATGAA+AGG | - | tig0022357:102017-102036 | None:intergenic | 35.0% | |
| ! | AGATTTTTGACACTCCAAAG+AGG | + | tig0022357:102052-102071 | Msa1399460:CDS | 35.0% |
| TATCATCAGGCAATATTGAC+TGG | + | tig0022357:102151-102170 | Msa1399460:CDS | 35.0% | |
| !! | TGTTGTGTTGATTCTTATGG+TGG | + | tig0022357:100356-100375 | Msa1399460:five_prime_UTR | 35.0% |
| GAAACTTGAGCAAGAAACAT+AGG | - | tig0022357:100544-100563 | None:intergenic | 35.0% | |
| GCATGATACTGTCAATCATT+GGG | - | tig0022357:100654-100673 | None:intergenic | 35.0% | |
| TGCATGATACTGTCAATCAT+TGG | - | tig0022357:100655-100674 | None:intergenic | 35.0% | |
| CGAAGCTAAAGTCTGAATTA+TGG | - | tig0022357:100680-100699 | None:intergenic | 35.0% | |
| !! | CTCTTGTTGATTCGGATAAT+TGG | + | tig0022357:100890-100909 | Msa1399460:CDS | 35.0% |
| !! | TTGTTGATTCGGATAATTGG+CGG | + | tig0022357:100893-100912 | Msa1399460:CDS | 35.0% |
| TACTCAGACTAATCTGCATA+TGG | + | tig0022357:100981-101000 | Msa1399460:CDS | 35.0% | |
| ACTCAGACTAATCTGCATAT+GGG | + | tig0022357:100982-101001 | Msa1399460:CDS | 35.0% | |
| AACGATCAAAGAGTTATGCT+TGG | - | tig0022357:101025-101044 | None:intergenic | 35.0% | |
| TGGATGGTAATTCTCAAAAG+CGG | + | tig0022357:101109-101128 | Msa1399460:CDS | 35.0% | |
| TTGGATCTAAACACTTCATC+AGG | - | tig0022357:101161-101180 | None:intergenic | 35.0% | |
| ! | TGATGAAGTGTTTAGATCCA+AGG | + | tig0022357:101160-101179 | Msa1399460:CDS | 35.0% |
| !!! | AGATCCAAGGAGTATTTTCT+CGG | + | tig0022357:101173-101192 | Msa1399460:CDS | 35.0% |
| GATAAAATGGCGTTCATCAA+AGG | + | tig0022357:101237-101256 | Msa1399460:CDS | 35.0% | |
| ! | AGTAGGAGAGATTTTATGGA+TGG | + | tig0022357:101357-101376 | Msa1399460:CDS | 35.0% |
| TGAAATAGGAGAATCAGCAA+TGG | - | tig0022357:101469-101488 | None:intergenic | 35.0% | |
| ! | ATATTTGAGACACTTACGAG+AGG | - | tig0022357:101723-101742 | None:intergenic | 35.0% |
| GTGATCTCTGATAACATGAA+AGG | - | tig0022357:102017-102036 | None:intergenic | 35.0% | |
| ! | AGATTTTTGACACTCCAAAG+AGG | + | tig0022357:102052-102071 | Msa1399460:CDS | 35.0% |
| TATCATCAGGCAATATTGAC+TGG | + | tig0022357:102151-102170 | Msa1399460:CDS | 35.0% | |
| GCTGTATGAAGTTCTTGCTA+GGG | + | tig0022357:100609-100628 | Msa1399460:CDS | 40.0% | |
| AAGTTCTTGCTAGGGTTCAT+GGG | + | tig0022357:100617-100636 | Msa1399460:CDS | 40.0% | |
| !! | TCGAACAAGCTTGTTGAAGA+GGG | - | tig0022357:100717-100736 | None:intergenic | 40.0% |
| ! | TCTTCAACAAGCTTGTTCGA+GGG | + | tig0022357:100717-100736 | Msa1399460:CDS | 40.0% |
| ATTCCATATCTAGCAACAGC+TGG | - | tig0022357:100748-100767 | None:intergenic | 40.0% | |
| !! | TCTCTGGATAGTTTGAGTTG+CGG | + | tig0022357:100847-100866 | Msa1399460:CDS | 40.0% |
| ! | CTTGAAGGCTCTTGTTGATT+CGG | + | tig0022357:100882-100901 | Msa1399460:CDS | 40.0% |
| GACTAATCTGCATATGGGTT+TGG | + | tig0022357:100987-101006 | Msa1399460:CDS | 40.0% | |
| AAATGTCAGTGGAGAGTCTA+TGG | + | tig0022357:101089-101108 | Msa1399460:CDS | 40.0% | |
| CGAACAAGTAATTGAGGAGA+TGG | + | tig0022357:101200-101219 | Msa1399460:CDS | 40.0% | |
| GCGAACGACAAAAAATTGAG+AGG | + | tig0022357:101297-101316 | Msa1399460:CDS | 40.0% | |
| !!! | TGACGGGTTCCAATTTTAGT+AGG | + | tig0022357:101340-101359 | Msa1399460:CDS | 40.0% |
| ATGGATGGAGATAGTTCTTC+AGG | + | tig0022357:101372-101391 | Msa1399460:CDS | 40.0% | |
| !! | ATTCACGTAGGAGTGTCAAT+AGG | + | tig0022357:101517-101536 | Msa1399460:CDS | 40.0% |
| !! | AAGCTTTGGAGCCTTGAAAT+TGG | + | tig0022357:101540-101559 | Msa1399460:CDS | 40.0% |
| ! | TTTGGAGCCTTGAAATTGGA+GGG | + | tig0022357:101544-101563 | Msa1399460:CDS | 40.0% |
| ATCCATACCATTTCTCTCCT+CGG | - | tig0022357:101607-101626 | None:intergenic | 40.0% | |
| ATGGATCACACGTTTCTGAA+TGG | + | tig0022357:101621-101640 | Msa1399460:CDS | 40.0% | |
| ! | GAATGGTGGAGATTTAACTG+AGG | + | tig0022357:101638-101657 | Msa1399460:CDS | 40.0% |
| ! | ATTCCTTGTCTAGGACTTCT+GGG | - | tig0022357:101678-101697 | None:intergenic | 40.0% |
| ! | TATTCCTTGTCTAGGACTTC+TGG | - | tig0022357:101679-101698 | None:intergenic | 40.0% |
| CTTCTGGATATTCCTTGTCT+AGG | - | tig0022357:101687-101706 | None:intergenic | 40.0% | |
| AGAACAATCGGAACTCTCAT+CGG | - | tig0022357:102103-102122 | None:intergenic | 40.0% | |
| !! | GTTCTGAAAAACCGATTCGA+AGG | + | tig0022357:102118-102137 | Msa1399460:CDS | 40.0% |
| AGACTCTTGAACCTTCGAAT+CGG | - | tig0022357:102132-102151 | None:intergenic | 40.0% | |
| AGGTTCAAGAGTCTATCATC+AGG | + | tig0022357:102138-102157 | Msa1399460:CDS | 40.0% | |
| !! | CGTGATTTGCTAAACCATTC+TGG | - | tig0022357:102203-102222 | None:intergenic | 40.0% |
| GCAAATCACGACAAGTATGA+CGG | + | tig0022357:102213-102232 | Msa1399460:CDS | 40.0% | |
| AAGTATGACGGCAAAGAGTA+CGG | + | tig0022357:102225-102244 | Msa1399460:CDS | 40.0% | |
| GCTGTATGAAGTTCTTGCTA+GGG | + | tig0022357:100609-100628 | Msa1399460:CDS | 40.0% | |
| AAGTTCTTGCTAGGGTTCAT+GGG | + | tig0022357:100617-100636 | Msa1399460:CDS | 40.0% | |
| !! | TCGAACAAGCTTGTTGAAGA+GGG | - | tig0022357:100717-100736 | None:intergenic | 40.0% |
| ! | TCTTCAACAAGCTTGTTCGA+GGG | + | tig0022357:100717-100736 | Msa1399460:CDS | 40.0% |
| ATTCCATATCTAGCAACAGC+TGG | - | tig0022357:100748-100767 | None:intergenic | 40.0% | |
| !! | TCTCTGGATAGTTTGAGTTG+CGG | + | tig0022357:100847-100866 | Msa1399460:CDS | 40.0% |
| ! | CTTGAAGGCTCTTGTTGATT+CGG | + | tig0022357:100882-100901 | Msa1399460:CDS | 40.0% |
| GACTAATCTGCATATGGGTT+TGG | + | tig0022357:100987-101006 | Msa1399460:CDS | 40.0% | |
| AAATGTCAGTGGAGAGTCTA+TGG | + | tig0022357:101089-101108 | Msa1399460:CDS | 40.0% | |
| CGAACAAGTAATTGAGGAGA+TGG | + | tig0022357:101200-101219 | Msa1399460:CDS | 40.0% | |
| GCGAACGACAAAAAATTGAG+AGG | + | tig0022357:101297-101316 | Msa1399460:CDS | 40.0% | |
| !!! | TGACGGGTTCCAATTTTAGT+AGG | + | tig0022357:101340-101359 | Msa1399460:CDS | 40.0% |
| ATGGATGGAGATAGTTCTTC+AGG | + | tig0022357:101372-101391 | Msa1399460:CDS | 40.0% | |
| !! | ATTCACGTAGGAGTGTCAAT+AGG | + | tig0022357:101517-101536 | Msa1399460:CDS | 40.0% |
| !! | AAGCTTTGGAGCCTTGAAAT+TGG | + | tig0022357:101540-101559 | Msa1399460:CDS | 40.0% |
| ! | TTTGGAGCCTTGAAATTGGA+GGG | + | tig0022357:101544-101563 | Msa1399460:CDS | 40.0% |
| ATCCATACCATTTCTCTCCT+CGG | - | tig0022357:101607-101626 | None:intergenic | 40.0% | |
| ATGGATCACACGTTTCTGAA+TGG | + | tig0022357:101621-101640 | Msa1399460:CDS | 40.0% | |
| ! | GAATGGTGGAGATTTAACTG+AGG | + | tig0022357:101638-101657 | Msa1399460:CDS | 40.0% |
| ! | ATTCCTTGTCTAGGACTTCT+GGG | - | tig0022357:101678-101697 | None:intergenic | 40.0% |
| ! | TATTCCTTGTCTAGGACTTC+TGG | - | tig0022357:101679-101698 | None:intergenic | 40.0% |
| CTTCTGGATATTCCTTGTCT+AGG | - | tig0022357:101687-101706 | None:intergenic | 40.0% | |
| AGAACAATCGGAACTCTCAT+CGG | - | tig0022357:102103-102122 | None:intergenic | 40.0% | |
| !! | GTTCTGAAAAACCGATTCGA+AGG | + | tig0022357:102118-102137 | Msa1399460:CDS | 40.0% |
| AGACTCTTGAACCTTCGAAT+CGG | - | tig0022357:102132-102151 | None:intergenic | 40.0% | |
| AGGTTCAAGAGTCTATCATC+AGG | + | tig0022357:102138-102157 | Msa1399460:CDS | 40.0% | |
| !! | CGTGATTTGCTAAACCATTC+TGG | - | tig0022357:102203-102222 | None:intergenic | 40.0% |
| GCAAATCACGACAAGTATGA+CGG | + | tig0022357:102213-102232 | Msa1399460:CDS | 40.0% | |
| AAGTATGACGGCAAAGAGTA+CGG | + | tig0022357:102225-102244 | Msa1399460:CDS | 40.0% | |
| GCTGTAGTTCAACAATGGGA+AGG | + | tig0022357:100401-100420 | Msa1399460:exon | 45.0% | |
| TCAAGCTCTCTTCGTAACAC+AGG | - | tig0022357:100436-100455 | None:intergenic | 45.0% | |
| !! | TGCTCAAGTTTCTGAGACCA+AGG | + | tig0022357:100552-100571 | Msa1399460:CDS | 45.0% |
| !! | GTTTCTGAGACCAAGGAAAC+CGG | + | tig0022357:100559-100578 | Msa1399460:CDS | 45.0% |
| GAATTCTCCAGACACAGTAC+CGG | - | tig0022357:100581-100600 | None:intergenic | 45.0% | |
| CGCTGTATGAAGTTCTTGCT+AGG | + | tig0022357:100608-100627 | Msa1399460:CDS | 45.0% | |
| GAAGTTCTTGCTAGGGTTCA+TGG | + | tig0022357:100616-100635 | Msa1399460:CDS | 45.0% | |
| AGTTCTTGCTAGGGTTCATG+GGG | + | tig0022357:100618-100637 | Msa1399460:CDS | 45.0% | |
| ! | AGACTTTAGCTTCGAGTGCA+GGG | + | tig0022357:100686-100705 | Msa1399460:CDS | 45.0% |
| !! | CTCGAACAAGCTTGTTGAAG+AGG | - | tig0022357:100718-100737 | None:intergenic | 45.0% |
| ! | CTCTTCAACAAGCTTGTTCG+AGG | + | tig0022357:100716-100735 | Msa1399460:CDS | 45.0% |
| GTTCCAGCTGTTGCTAGATA+TGG | + | tig0022357:100742-100761 | Msa1399460:CDS | 45.0% | |
| TGGAATTGATCCAACGATGC+CGG | + | tig0022357:100762-100781 | Msa1399460:CDS | 45.0% | |
| ! | GCGGTTTGCTTCTGATGAAA+TGG | + | tig0022357:100912-100931 | Msa1399460:CDS | 45.0% |
| AATGTTGCTGTGGCGTTAGA+AGG | + | tig0022357:100952-100971 | Msa1399460:CDS | 45.0% | |
| CTCGACTGCTCATACAATCT+GGG | + | tig0022357:101055-101074 | Msa1399460:CDS | 45.0% | |
| CTGCGCATGTTAAATGTCAG+TGG | + | tig0022357:101078-101097 | Msa1399460:CDS | 45.0% | |
| !!! | TCCAAGGAGTATTTTCTCGG+AGG | + | tig0022357:101176-101195 | Msa1399460:CDS | 45.0% |
| ACCTCCGAGAAAATACTCCT+TGG | - | tig0022357:101180-101199 | None:intergenic | 45.0% | |
| GGAGGTCGAACAAGTAATTG+AGG | + | tig0022357:101194-101213 | Msa1399460:CDS | 45.0% | |
| !! | TGAACGCCATTTTATCGGAC+TGG | - | tig0022357:101233-101252 | None:intergenic | 45.0% |
| GGAGATAGTTCTTCAGGTGA+TGG | + | tig0022357:101378-101397 | Msa1399460:CDS | 45.0% | |
| GTGAATCAGATGTGGGAGTA+CGG | - | tig0022357:101407-101426 | None:intergenic | 45.0% | |
| GACTCTGGTGAATCAGATGT+GGG | - | tig0022357:101414-101433 | None:intergenic | 45.0% | |
| TGACTCTGGTGAATCAGATG+TGG | - | tig0022357:101415-101434 | None:intergenic | 45.0% | |
| CAGCAATGGATCCATATCCA+GGG | - | tig0022357:101455-101474 | None:intergenic | 45.0% | |
| TCAGCAATGGATCCATATCC+AGG | - | tig0022357:101456-101475 | None:intergenic | 45.0% | |
| ! | GGAGTGTCAATAGGAAGCTT+TGG | + | tig0022357:101526-101545 | Msa1399460:CDS | 45.0% |
| !! | CTTTGGAGCCTTGAAATTGG+AGG | + | tig0022357:101543-101562 | Msa1399460:CDS | 45.0% |
| TTGGAGCCTTGAAATTGGAG+GGG | + | tig0022357:101545-101564 | Msa1399460:CDS | 45.0% | |
| CATCAACCCCTCCAATTTCA+AGG | - | tig0022357:101554-101573 | None:intergenic | 45.0% | |
| GTTGATGTGTCTCTCAAGGA+CGG | + | tig0022357:101567-101586 | Msa1399460:CDS | 45.0% | |
| GATCACACGTTTCTGAATGG+TGG | + | tig0022357:101624-101643 | Msa1399460:CDS | 45.0% | |
| ! | TTCCTTGTCTAGGACTTCTG+GGG | - | tig0022357:101677-101696 | None:intergenic | 45.0% |
| ! | AGGACTTGTGTTGGTACTTC+TGG | - | tig0022357:101703-101722 | None:intergenic | 45.0% |
| ACTTACGAGAGGACTTGTGT+TGG | - | tig0022357:101712-101731 | None:intergenic | 45.0% | |
| ! | AATCGGAACTCTCATCGGTT+GGG | - | tig0022357:102098-102117 | None:intergenic | 45.0% |
| ! | AAAGAGTACGGAAGCTCATG+CGG | + | tig0022357:102237-102256 | Msa1399460:CDS | 45.0% |
| GCTGTAGTTCAACAATGGGA+AGG | + | tig0022357:100401-100420 | Msa1399460:exon | 45.0% | |
| TCAAGCTCTCTTCGTAACAC+AGG | - | tig0022357:100436-100455 | None:intergenic | 45.0% | |
| !! | TGCTCAAGTTTCTGAGACCA+AGG | + | tig0022357:100552-100571 | Msa1399460:CDS | 45.0% |
| !! | GTTTCTGAGACCAAGGAAAC+CGG | + | tig0022357:100559-100578 | Msa1399460:CDS | 45.0% |
| GAATTCTCCAGACACAGTAC+CGG | - | tig0022357:100581-100600 | None:intergenic | 45.0% | |
| CGCTGTATGAAGTTCTTGCT+AGG | + | tig0022357:100608-100627 | Msa1399460:CDS | 45.0% | |
| GAAGTTCTTGCTAGGGTTCA+TGG | + | tig0022357:100616-100635 | Msa1399460:CDS | 45.0% | |
| AGTTCTTGCTAGGGTTCATG+GGG | + | tig0022357:100618-100637 | Msa1399460:CDS | 45.0% | |
| ! | AGACTTTAGCTTCGAGTGCA+GGG | + | tig0022357:100686-100705 | Msa1399460:CDS | 45.0% |
| !! | CTCGAACAAGCTTGTTGAAG+AGG | - | tig0022357:100718-100737 | None:intergenic | 45.0% |
| ! | CTCTTCAACAAGCTTGTTCG+AGG | + | tig0022357:100716-100735 | Msa1399460:CDS | 45.0% |
| GTTCCAGCTGTTGCTAGATA+TGG | + | tig0022357:100742-100761 | Msa1399460:CDS | 45.0% | |
| TGGAATTGATCCAACGATGC+CGG | + | tig0022357:100762-100781 | Msa1399460:CDS | 45.0% | |
| ! | GCGGTTTGCTTCTGATGAAA+TGG | + | tig0022357:100912-100931 | Msa1399460:CDS | 45.0% |
| AATGTTGCTGTGGCGTTAGA+AGG | + | tig0022357:100952-100971 | Msa1399460:CDS | 45.0% | |
| CTCGACTGCTCATACAATCT+GGG | + | tig0022357:101055-101074 | Msa1399460:CDS | 45.0% | |
| CTGCGCATGTTAAATGTCAG+TGG | + | tig0022357:101078-101097 | Msa1399460:CDS | 45.0% | |
| !!! | TCCAAGGAGTATTTTCTCGG+AGG | + | tig0022357:101176-101195 | Msa1399460:CDS | 45.0% |
| ACCTCCGAGAAAATACTCCT+TGG | - | tig0022357:101180-101199 | None:intergenic | 45.0% | |
| GGAGGTCGAACAAGTAATTG+AGG | + | tig0022357:101194-101213 | Msa1399460:CDS | 45.0% | |
| !! | TGAACGCCATTTTATCGGAC+TGG | - | tig0022357:101233-101252 | None:intergenic | 45.0% |
| GGAGATAGTTCTTCAGGTGA+TGG | + | tig0022357:101378-101397 | Msa1399460:CDS | 45.0% | |
| GTGAATCAGATGTGGGAGTA+CGG | - | tig0022357:101407-101426 | None:intergenic | 45.0% | |
| GACTCTGGTGAATCAGATGT+GGG | - | tig0022357:101414-101433 | None:intergenic | 45.0% | |
| TGACTCTGGTGAATCAGATG+TGG | - | tig0022357:101415-101434 | None:intergenic | 45.0% | |
| CAGCAATGGATCCATATCCA+GGG | - | tig0022357:101455-101474 | None:intergenic | 45.0% | |
| TCAGCAATGGATCCATATCC+AGG | - | tig0022357:101456-101475 | None:intergenic | 45.0% | |
| ! | GGAGTGTCAATAGGAAGCTT+TGG | + | tig0022357:101526-101545 | Msa1399460:CDS | 45.0% |
| !! | CTTTGGAGCCTTGAAATTGG+AGG | + | tig0022357:101543-101562 | Msa1399460:CDS | 45.0% |
| TTGGAGCCTTGAAATTGGAG+GGG | + | tig0022357:101545-101564 | Msa1399460:CDS | 45.0% | |
| CATCAACCCCTCCAATTTCA+AGG | - | tig0022357:101554-101573 | None:intergenic | 45.0% | |
| GTTGATGTGTCTCTCAAGGA+CGG | + | tig0022357:101567-101586 | Msa1399460:CDS | 45.0% | |
| GATCACACGTTTCTGAATGG+TGG | + | tig0022357:101624-101643 | Msa1399460:CDS | 45.0% | |
| ! | TTCCTTGTCTAGGACTTCTG+GGG | - | tig0022357:101677-101696 | None:intergenic | 45.0% |
| ! | AGGACTTGTGTTGGTACTTC+TGG | - | tig0022357:101703-101722 | None:intergenic | 45.0% |
| ACTTACGAGAGGACTTGTGT+TGG | - | tig0022357:101712-101731 | None:intergenic | 45.0% | |
| ! | AATCGGAACTCTCATCGGTT+GGG | - | tig0022357:102098-102117 | None:intergenic | 45.0% |
| ! | AAAGAGTACGGAAGCTCATG+CGG | + | tig0022357:102237-102256 | Msa1399460:CDS | 45.0% |
| !! | AGACACAGTACCGGTTTCCT+TGG | - | tig0022357:100572-100591 | None:intergenic | 50.0% |
| AAGGAAACCGGTACTGTGTC+TGG | + | tig0022357:100571-100590 | Msa1399460:CDS | 50.0% | |
| ! | CAGACTTTAGCTTCGAGTGC+AGG | + | tig0022357:100685-100704 | Msa1399460:CDS | 50.0% |
| AATTGATCCAACGATGCCGG+AGG | + | tig0022357:100765-100784 | Msa1399460:CDS | 50.0% | |
| TTCTTATCCTCCGGCATCGT+TGG | - | tig0022357:100775-100794 | None:intergenic | 50.0% | |
| CTCGTGAGCGAATCAGATAG+AGG | - | tig0022357:100826-100845 | None:intergenic | 50.0% | |
| TGATTCGCTCACGAGTTCTC+TGG | + | tig0022357:100831-100850 | Msa1399460:CDS | 50.0% | |
| GGTTTGCCAGAATGTTGCTG+TGG | + | tig0022357:100942-100961 | Msa1399460:CDS | 50.0% | |
| CTAACGCCACAGCAACATTC+TGG | - | tig0022357:100951-100970 | None:intergenic | 50.0% | |
| GCTCGACTGCTCATACAATC+TGG | + | tig0022357:101054-101073 | Msa1399460:CDS | 50.0% | |
| GTCAGTGGAGAGTCTATGGA+TGG | + | tig0022357:101093-101112 | Msa1399460:CDS | 50.0% | |
| GCGGTTCGCAGCTATTCAAA+TGG | + | tig0022357:101128-101147 | Msa1399460:CDS | 50.0% | |
| GCAGTGCCAGTCCGATAAAA+TGG | + | tig0022357:101224-101243 | Msa1399460:CDS | 50.0% | |
| AGGCATGAAGAGTCCTGCTT+CGG | + | tig0022357:101317-101336 | Msa1399460:CDS | 50.0% | |
| ! | TAGTCGAGAGTACGTGACTC+TGG | - | tig0022357:101429-101448 | None:intergenic | 50.0% |
| CTCGACTACTTCCCTGGATA+TGG | + | tig0022357:101441-101460 | Msa1399460:CDS | 50.0% | |
| !! | AGGGGTTGATGTGTCTCTCA+AGG | + | tig0022357:101563-101582 | Msa1399460:CDS | 50.0% |
| !! | TCAAGTGCCGAGGAGAGAAA+TGG | + | tig0022357:101597-101616 | Msa1399460:CDS | 50.0% |
| TGCCGAGGAGAGAAATGGTA+TGG | + | tig0022357:101602-101621 | Msa1399460:CDS | 50.0% | |
| ATCCCCAGAAGTCCTAGACA+AGG | + | tig0022357:101672-101691 | Msa1399460:CDS | 50.0% | |
| AGAGAGCGAATGAGCCTCTT+TGG | - | tig0022357:102069-102088 | None:intergenic | 50.0% | |
| CAATCGGAACTCTCATCGGT+TGG | - | tig0022357:102099-102118 | None:intergenic | 50.0% | |
| GGTTATCAGCATCAGCAGGA+AGG | - | tig0022357:102311-102330 | None:intergenic | 50.0% | |
| CTCTGGTTATCAGCATCAGC+AGG | - | tig0022357:102315-102334 | None:intergenic | 50.0% | |
| CTGCTGATGCTGATAACCAG+AGG | + | tig0022357:102313-102332 | Msa1399460:CDS | 50.0% | |
| !! | AGACACAGTACCGGTTTCCT+TGG | - | tig0022357:100572-100591 | None:intergenic | 50.0% |
| AAGGAAACCGGTACTGTGTC+TGG | + | tig0022357:100571-100590 | Msa1399460:CDS | 50.0% | |
| ! | CAGACTTTAGCTTCGAGTGC+AGG | + | tig0022357:100685-100704 | Msa1399460:CDS | 50.0% |
| AATTGATCCAACGATGCCGG+AGG | + | tig0022357:100765-100784 | Msa1399460:CDS | 50.0% | |
| TTCTTATCCTCCGGCATCGT+TGG | - | tig0022357:100775-100794 | None:intergenic | 50.0% | |
| CTCGTGAGCGAATCAGATAG+AGG | - | tig0022357:100826-100845 | None:intergenic | 50.0% | |
| TGATTCGCTCACGAGTTCTC+TGG | + | tig0022357:100831-100850 | Msa1399460:CDS | 50.0% | |
| GGTTTGCCAGAATGTTGCTG+TGG | + | tig0022357:100942-100961 | Msa1399460:CDS | 50.0% | |
| CTAACGCCACAGCAACATTC+TGG | - | tig0022357:100951-100970 | None:intergenic | 50.0% | |
| GCTCGACTGCTCATACAATC+TGG | + | tig0022357:101054-101073 | Msa1399460:CDS | 50.0% | |
| GTCAGTGGAGAGTCTATGGA+TGG | + | tig0022357:101093-101112 | Msa1399460:CDS | 50.0% | |
| GCGGTTCGCAGCTATTCAAA+TGG | + | tig0022357:101128-101147 | Msa1399460:CDS | 50.0% | |
| GCAGTGCCAGTCCGATAAAA+TGG | + | tig0022357:101224-101243 | Msa1399460:CDS | 50.0% | |
| AGGCATGAAGAGTCCTGCTT+CGG | + | tig0022357:101317-101336 | Msa1399460:CDS | 50.0% | |
| ! | TAGTCGAGAGTACGTGACTC+TGG | - | tig0022357:101429-101448 | None:intergenic | 50.0% |
| CTCGACTACTTCCCTGGATA+TGG | + | tig0022357:101441-101460 | Msa1399460:CDS | 50.0% | |
| !! | AGGGGTTGATGTGTCTCTCA+AGG | + | tig0022357:101563-101582 | Msa1399460:CDS | 50.0% |
| !! | TCAAGTGCCGAGGAGAGAAA+TGG | + | tig0022357:101597-101616 | Msa1399460:CDS | 50.0% |
| TGCCGAGGAGAGAAATGGTA+TGG | + | tig0022357:101602-101621 | Msa1399460:CDS | 50.0% | |
| ATCCCCAGAAGTCCTAGACA+AGG | + | tig0022357:101672-101691 | Msa1399460:CDS | 50.0% | |
| AGAGAGCGAATGAGCCTCTT+TGG | - | tig0022357:102069-102088 | None:intergenic | 50.0% | |
| CAATCGGAACTCTCATCGGT+TGG | - | tig0022357:102099-102118 | None:intergenic | 50.0% | |
| GGTTATCAGCATCAGCAGGA+AGG | - | tig0022357:102311-102330 | None:intergenic | 50.0% | |
| CTCTGGTTATCAGCATCAGC+AGG | - | tig0022357:102315-102334 | None:intergenic | 50.0% | |
| CTGCTGATGCTGATAACCAG+AGG | + | tig0022357:102313-102332 | Msa1399460:CDS | 50.0% | |
| CGGTGCAGCTCTTTGCTTGA+AGG | + | tig0022357:100867-100886 | Msa1399460:CDS | 55.0% | |
| GAAGAGTCCTGCTTCGGTGA+CGG | + | tig0022357:101323-101342 | Msa1399460:CDS | 55.0% | |
| AAGAGTCCTGCTTCGGTGAC+GGG | + | tig0022357:101324-101343 | Msa1399460:CDS | 55.0% | |
| CGTACTCTCGACTACTTCCC+TGG | + | tig0022357:101435-101454 | Msa1399460:CDS | 55.0% | |
| TACGGAAGCTCATGCGGTGA+CGG | + | tig0022357:102243-102262 | Msa1399460:CDS | 55.0% | |
| !! | TGCGGTGACGGACAGTATCA+AGG | + | tig0022357:102255-102274 | Msa1399460:CDS | 55.0% |
| !! | GGTGACGGACAGTATCAAGG+AGG | + | tig0022357:102258-102277 | Msa1399460:CDS | 55.0% |
| AGCATCAGCAGGAAGGTCGT+CGG | - | tig0022357:102304-102323 | None:intergenic | 55.0% | |
| CGGTGCAGCTCTTTGCTTGA+AGG | + | tig0022357:100867-100886 | Msa1399460:CDS | 55.0% | |
| GAAGAGTCCTGCTTCGGTGA+CGG | + | tig0022357:101323-101342 | Msa1399460:CDS | 55.0% | |
| AAGAGTCCTGCTTCGGTGAC+GGG | + | tig0022357:101324-101343 | Msa1399460:CDS | 55.0% | |
| CGTACTCTCGACTACTTCCC+TGG | + | tig0022357:101435-101454 | Msa1399460:CDS | 55.0% | |
| TACGGAAGCTCATGCGGTGA+CGG | + | tig0022357:102243-102262 | Msa1399460:CDS | 55.0% | |
| !! | TGCGGTGACGGACAGTATCA+AGG | + | tig0022357:102255-102274 | Msa1399460:CDS | 55.0% |
| !! | GGTGACGGACAGTATCAAGG+AGG | + | tig0022357:102258-102277 | Msa1399460:CDS | 55.0% |
| AGCATCAGCAGGAAGGTCGT+CGG | - | tig0022357:102304-102323 | None:intergenic | 55.0% | |
| TTGGAACCCGTCACCGAAGC+AGG | - | tig0022357:101333-101352 | None:intergenic | 60.0% | |
| ! | CGGTCTGTTCTCAAGTGCCG+AGG | + | tig0022357:101587-101606 | Msa1399460:CDS | 60.0% |
| TTGGAACCCGTCACCGAAGC+AGG | - | tig0022357:101333-101352 | None:intergenic | 60.0% | |
| ! | CGGTCTGTTCTCAAGTGCCG+AGG | + | tig0022357:101587-101606 | Msa1399460:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022357 | gene | 100303 | 102350 | 100303 | ID=Msa1399460;Name=Msa1399460 |
| tig0022357 | mRNA | 100303 | 102350 | 100303 | ID=Msa1399460-mRNA-1;Parent=Msa1399460;Name=Msa1399460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=112|1|0.5|1|1|1|2|0|544 |
| tig0022357 | exon | 100303 | 101725 | 100303 | ID=Msa1399460-mRNA-1:exon:17183;Parent=Msa1399460-mRNA-1 |
| tig0022357 | exon | 102030 | 102350 | 102030 | ID=Msa1399460-mRNA-1:exon:17184;Parent=Msa1399460-mRNA-1 |
| tig0022357 | five_prime_UTR | 100303 | 100414 | 100303 | ID=Msa1399460-mRNA-1:five_prime_utr;Parent=Msa1399460-mRNA-1 |
| tig0022357 | CDS | 100415 | 101725 | 100415 | ID=Msa1399460-mRNA-1:cds;Parent=Msa1399460-mRNA-1 |
| tig0022357 | CDS | 102030 | 102350 | 102030 | ID=Msa1399460-mRNA-1:cds;Parent=Msa1399460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
