Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425400 | RHN69872.1 | 77.011 | 174 | 21 | 1 | 1 | 155 | 12 | 185 | 1.58e-53 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425400 | sp|Q99JH1|RP25L_MOUSE | 38.554 | 83 | 49 | 1 | 6 | 86 | 52 | 134 | 4.70e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425400 | A0A396IWE9 | 77.011 | 174 | 21 | 1 | 1 | 155 | 12 | 185 | 7.53e-54 | 179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004880 | Msa0425400 | 0.816582 | 5.135478e-52 | -8.615850e-47 |
| Msa0015300 | Msa0425400 | 0.800733 | 1.254579e-48 | -8.615850e-47 |
| Msa0016670 | Msa0425400 | 0.801399 | 9.172251e-49 | -8.615850e-47 |
| Msa0017510 | Msa0425400 | 0.863233 | 2.881146e-64 | -8.615850e-47 |
| Msa0051790 | Msa0425400 | 0.806381 | 8.457509e-50 | -8.615850e-47 |
| Msa0078650 | Msa0425400 | 0.802121 | 6.519915e-49 | -8.615850e-47 |
| Msa0110970 | Msa0425400 | 0.841673 | 4.121216e-58 | -8.615850e-47 |
| Msa0112750 | Msa0425400 | 0.819022 | 1.444739e-52 | -8.615850e-47 |
| Msa0124340 | Msa0425400 | 0.800041 | 1.735530e-48 | -8.615850e-47 |
| Msa0126370 | Msa0425400 | 0.807841 | 4.151446e-50 | -8.615850e-47 |
| Msa0133130 | Msa0425400 | 0.804262 | 2.350788e-49 | -8.615850e-47 |
| Msa0140820 | Msa0425400 | 0.804781 | 1.831775e-49 | -8.615850e-47 |
| Msa0141620 | Msa0425400 | 0.809265 | 2.060654e-50 | -8.615850e-47 |
| Msa0157290 | Msa0425400 | 0.862578 | 4.588589e-64 | -8.615850e-47 |
| Msa0197930 | Msa0425400 | 0.833125 | 6.380502e-56 | -8.615850e-47 |
| Msa0215320 | Msa0425400 | -0.805022 | 1.630979e-49 | -8.615850e-47 |
| Msa0220740 | Msa0425400 | 0.809760 | 1.613469e-50 | -8.615850e-47 |
| Msa0225600 | Msa0425400 | 0.805888 | 1.073840e-49 | -8.615850e-47 |
| Msa0231650 | Msa0425400 | 0.801500 | 8.746405e-49 | -8.615850e-47 |
| Msa0379270 | Msa0425400 | 0.800966 | 1.124614e-48 | -8.615850e-47 |
| Msa0385580 | Msa0425400 | 0.803259 | 3.796817e-49 | -8.615850e-47 |
| Msa0392510 | Msa0425400 | 0.802096 | 6.598466e-49 | -8.615850e-47 |
| Msa0402290 | Msa0425400 | 0.802595 | 5.206639e-49 | -8.615850e-47 |
| Msa0410650 | Msa0425400 | 0.804812 | 1.804448e-49 | -8.615850e-47 |
| Msa0419820 | Msa0425400 | 0.812195 | 4.789815e-51 | -8.615850e-47 |
| Msa0425400 | Msa0428590 | 0.803439 | 3.483573e-49 | -8.615850e-47 |
| Msa0425400 | Msa0461720 | 0.811616 | 6.404129e-51 | -8.615850e-47 |
| Msa0425400 | Msa0484780 | 0.824858 | 6.426976e-54 | -8.615850e-47 |
| Msa0425400 | Msa0487630 | 0.804823 | 1.795190e-49 | -8.615850e-47 |
| Msa0425400 | Msa0495320 | 0.810436 | 1.153966e-50 | -8.615850e-47 |
| Msa0425400 | Msa0512900 | 0.807694 | 4.459507e-50 | -8.615850e-47 |
| Msa0425400 | Msa0523460 | 0.817403 | 3.357286e-52 | -8.615850e-47 |
| Msa0425400 | Msa0527550 | 0.803886 | 2.814572e-49 | -8.615850e-47 |
| Msa0425400 | Msa0529680 | 0.804324 | 2.281719e-49 | -8.615850e-47 |
| Msa0425400 | Msa0534590 | 0.804068 | 2.579664e-49 | -8.615850e-47 |
| Msa0425400 | Msa0551890 | 0.805963 | 1.035748e-49 | -8.615850e-47 |
| Msa0425400 | Msa0616020 | 0.811437 | 7.005143e-51 | -8.615850e-47 |
| Msa0425400 | Msa0625070 | 0.819264 | 1.272117e-52 | -8.615850e-47 |
| Msa0425400 | Msa0626090 | 0.806368 | 8.510363e-50 | -8.615850e-47 |
| Msa0425400 | Msa0641190 | 0.803601 | 3.224634e-49 | -8.615850e-47 |
| Msa0425400 | Msa0643220 | 0.800977 | 1.118922e-48 | -8.615850e-47 |
| Msa0425400 | Msa0644840 | 0.807749 | 4.340923e-50 | -8.615850e-47 |
| Msa0425400 | Msa0657970 | 0.828378 | 9.293695e-55 | -8.615850e-47 |
| Msa0425400 | Msa0673450 | 0.802574 | 5.259750e-49 | -8.615850e-47 |
| Msa0425400 | Msa0673460 | 0.813957 | 1.967566e-51 | -8.615850e-47 |
| Msa0425400 | Msa0696640 | 0.812301 | 4.542868e-51 | -8.615850e-47 |
| Msa0425400 | Msa0720820 | 0.806894 | 6.590443e-50 | -8.615850e-47 |
| Msa0425400 | Msa0741240 | 0.802129 | 6.494850e-49 | -8.615850e-47 |
| Msa0425400 | Msa0743720 | 0.806997 | 6.266450e-50 | -8.615850e-47 |
| Msa0425400 | Msa0749290 | 0.809968 | 1.455662e-50 | -8.615850e-47 |
| Msa0425400 | Msa0750880 | 0.806058 | 9.890637e-50 | -8.615850e-47 |
| Msa0425400 | Msa0761940 | 0.812229 | 4.709982e-51 | -8.615850e-47 |
| Msa0425400 | Msa0790660 | -0.803428 | 3.502974e-49 | -8.615850e-47 |
| Msa0425400 | Msa0801110 | 0.801401 | 9.161772e-49 | -8.615850e-47 |
| Msa0425400 | Msa0803890 | 0.838072 | 3.572313e-57 | -8.615850e-47 |
| Msa0425400 | Msa0824680 | 0.800834 | 1.196437e-48 | -8.615850e-47 |
| Msa0425400 | Msa0841940 | 0.812991 | 3.208765e-51 | -8.615850e-47 |
| Msa0425400 | Msa0861870 | 0.815169 | 1.060915e-51 | -8.615850e-47 |
| Msa0425400 | Msa0876660 | 0.808161 | 3.547710e-50 | -8.615850e-47 |
| Msa0425400 | Msa0880140 | 0.862296 | 5.601947e-64 | -8.615850e-47 |
| Msa0425400 | Msa0898670 | 0.800445 | 1.436738e-48 | -8.615850e-47 |
| Msa0425400 | Msa0902760 | 0.800241 | 1.580446e-48 | -8.615850e-47 |
| Msa0425400 | Msa0907070 | 0.816148 | 6.420341e-52 | -8.615850e-47 |
| Msa0425400 | Msa0922410 | 0.801977 | 6.980349e-49 | -8.615850e-47 |
| Msa0425400 | Msa0947660 | 0.811810 | 5.811866e-51 | -8.615850e-47 |
| Msa0425400 | Msa0953550 | 0.828977 | 6.659794e-55 | -8.615850e-47 |
| Msa0425400 | Msa0954130 | 0.842596 | 2.347727e-58 | -8.615850e-47 |
| Msa0425400 | Msa0954530 | 0.815126 | 1.084398e-51 | -8.615850e-47 |
| Msa0425400 | Msa0954550 | 0.831478 | 1.632012e-55 | -8.615850e-47 |
| Msa0425400 | Msa0957110 | 0.801246 | 9.855630e-49 | -8.615850e-47 |
| Msa0425400 | Msa0966400 | 0.810362 | 1.197095e-50 | -8.615850e-47 |
| Msa0425400 | Msa0968590 | 0.800908 | 1.155893e-48 | -8.615850e-47 |
| Msa0425400 | Msa0969520 | 0.810473 | 1.132948e-50 | -8.615850e-47 |
| Msa0425400 | Msa0990350 | 0.828038 | 1.122340e-54 | -8.615850e-47 |
| Msa0425400 | Msa1004550 | 0.819492 | 1.128992e-52 | -8.615850e-47 |
| Msa0425400 | Msa1004600 | 0.826231 | 3.039506e-54 | -8.615850e-47 |
| Msa0425400 | Msa1013400 | 0.803431 | 3.498221e-49 | -8.615850e-47 |
| Msa0425400 | Msa1014540 | 0.802819 | 4.682000e-49 | -8.615850e-47 |
| Msa0425400 | Msa1037920 | 0.805656 | 1.201549e-49 | -8.615850e-47 |
| Msa0425400 | Msa1040400 | 0.808269 | 3.364252e-50 | -8.615850e-47 |
| Msa0425400 | Msa1060220 | 0.817581 | 3.062503e-52 | -8.615850e-47 |
| Msa0425400 | Msa1066490 | 0.808572 | 2.899147e-50 | -8.615850e-47 |
| Msa0425400 | Msa1082500 | 0.828899 | 6.957284e-55 | -8.615850e-47 |
| Msa0425400 | Msa1085200 | 0.806764 | 7.020735e-50 | -8.615850e-47 |
| Msa0425400 | Msa1093530 | 0.802837 | 4.640842e-49 | -8.615850e-47 |
| Msa0425400 | Msa1123380 | 0.814527 | 1.472042e-51 | -8.615850e-47 |
| Msa0425400 | Msa1134110 | 0.810350 | 1.204228e-50 | -8.615850e-47 |
| Msa0425400 | Msa1135470 | 0.810100 | 1.363282e-50 | -8.615850e-47 |
| Msa0425400 | Msa1147900 | 0.830988 | 2.153511e-55 | -8.615850e-47 |
| Msa0425400 | Msa1151910 | 0.803907 | 2.786566e-49 | -8.615850e-47 |
| Msa0425400 | Msa1172450 | 0.800970 | 1.122636e-48 | -8.615850e-47 |
| Msa0425400 | Msa1172670 | 0.843488 | 1.359152e-58 | -8.615850e-47 |
| Msa0425400 | Msa1179460 | 0.812296 | 4.552678e-51 | -8.615850e-47 |
| Msa0425400 | Msa1193290 | 0.815393 | 9.460110e-52 | -8.615850e-47 |
| Msa0425400 | Msa1197590 | 0.813748 | 2.187750e-51 | -8.615850e-47 |
| Msa0425400 | Msa1218280 | -0.809013 | 2.334137e-50 | -8.615850e-47 |
| Msa0425400 | Msa1226660 | 0.809011 | 2.335751e-50 | -8.615850e-47 |
| Msa0425400 | Msa1253020 | 0.806223 | 9.131396e-50 | -8.615850e-47 |
| Msa0425400 | Msa1267960 | 0.807944 | 3.945689e-50 | -8.615850e-47 |
| Msa0425400 | Msa1283860 | 0.800834 | 1.196420e-48 | -8.615850e-47 |
| Msa0425400 | Msa1284680 | 0.802071 | 6.677142e-49 | -8.615850e-47 |
| Msa0425400 | Msa1303250 | 0.808855 | 2.522871e-50 | -8.615850e-47 |
| Msa0425400 | Msa1314340 | 0.819750 | 9.857611e-53 | -8.615850e-47 |
| Msa0425400 | Msa1324500 | 0.800505 | 1.396913e-48 | -8.615850e-47 |
| Msa0425400 | Msa1336710 | 0.812274 | 4.603617e-51 | -8.615850e-47 |
| Msa0425400 | Msa1353060 | 0.800713 | 1.266373e-48 | -8.615850e-47 |
| Msa0425400 | Msa1353470 | 0.832877 | 7.357227e-56 | -8.615850e-47 |
| Msa0425400 | Msa1359040 | 0.809148 | 2.182949e-50 | -8.615850e-47 |
| Msa0425400 | Msa1374550 | 0.835363 | 1.752768e-56 | -8.615850e-47 |
| Msa0425400 | Msa1397250 | 0.816309 | 5.910468e-52 | -8.615850e-47 |
| Msa0425400 | Msa1397860 | 0.800078 | 1.706420e-48 | -8.615850e-47 |
| Msa0425400 | Msa1402590 | 0.991912 | 3.095435e-190 | -8.615850e-47 |
| Msa0425400 | Msa1411020 | 0.800406 | 1.462956e-48 | -8.615850e-47 |
| Msa0425400 | Msa1430240 | 0.810228 | 1.279135e-50 | -8.615850e-47 |
| Msa0425400 | Msa1451160 | 0.808112 | 3.634512e-50 | -8.615850e-47 |
| Msa0425400 | Msa1452240 | 0.807374 | 5.215924e-50 | -8.615850e-47 |
| Msa0425400 | Msa1466540 | 0.800991 | 1.111529e-48 | -8.615850e-47 |
| Msa0257460 | Msa0425400 | 0.829550 | 4.834095e-55 | -8.615850e-47 |
| Msa0266450 | Msa0425400 | 0.806575 | 7.697106e-50 | -8.615850e-47 |
| Msa0284420 | Msa0425400 | 0.801712 | 7.911036e-49 | -8.615850e-47 |
| Msa0287650 | Msa0425400 | 0.800699 | 1.275142e-48 | -8.615850e-47 |
| Msa0296740 | Msa0425400 | 0.812952 | 3.272402e-51 | -8.615850e-47 |
| Msa0311700 | Msa0425400 | 0.801066 | 1.073005e-48 | -8.615850e-47 |
| Msa0317280 | Msa0425400 | 0.803293 | 3.735545e-49 | -8.615850e-47 |
| Msa0317340 | Msa0425400 | 0.806943 | 6.435887e-50 | -8.615850e-47 |
| Msa0333930 | Msa0425400 | 0.809682 | 1.676879e-50 | -8.615850e-47 |
| Msa0334040 | Msa0425400 | 0.807198 | 5.683904e-50 | -8.615850e-47 |
| Msa0334360 | Msa0425400 | 0.809598 | 1.748599e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425400 | MtrunA17_Chr3g0129501 | 77.011 | 174 | 21 | 1 | 1 | 155 | 12 | 185 | 1.45e-57 | 179 |
| Msa0425400 | MtrunA17_Chr3g0129471 | 81.765 | 170 | 12 | 1 | 1 | 151 | 12 | 181 | 7.43e-56 | 174 |
| Msa0425400 | MtrunA17_Chr3g0129481 | 76.296 | 135 | 12 | 2 | 1 | 115 | 12 | 146 | 1.40e-50 | 160 |
| Msa0425400 | MtrunA17_Chr7g0237631 | 50.000 | 118 | 54 | 2 | 1 | 114 | 40 | 156 | 4.33e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425400 | AT1G76010.2 | 81.395 | 86 | 16 | 0 | 1 | 86 | 40 | 125 | 3.42e-42 | 143 |
| Msa0425400 | AT1G76010.1 | 81.395 | 86 | 16 | 0 | 1 | 86 | 40 | 125 | 3.42e-42 | 143 |
| Msa0425400 | AT1G20220.1 | 72.093 | 86 | 24 | 0 | 1 | 86 | 40 | 125 | 4.02e-37 | 129 |
| Msa0425400 | AT3G07030.2 | 50.000 | 112 | 55 | 1 | 1 | 111 | 40 | 151 | 1.41e-30 | 114 |
| Msa0425400 | AT3G07030.3 | 50.000 | 112 | 55 | 1 | 1 | 111 | 40 | 151 | 1.41e-30 | 114 |
| Msa0425400 | AT3G07030.4 | 50.000 | 112 | 55 | 1 | 1 | 111 | 40 | 151 | 1.56e-30 | 114 |
| Msa0425400 | AT3G07030.1 | 50.000 | 112 | 55 | 1 | 1 | 111 | 40 | 151 | 3.57e-30 | 113 |
| Msa0425400 | AT3G07030.5 | 50.000 | 112 | 55 | 1 | 1 | 111 | 40 | 151 | 1.25e-29 | 112 |
Find 61 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATGGGACCGTGCCTTCC+GGG | 0.255304 | 3_2:+75787727 | Msa0425400:CDS |
| CTGCATCAGAACACTATTAT+TGG | 0.280228 | 3_2:+75786647 | Msa0425400:CDS |
| AGGGGAAGGGGAAGAGGCAG+AGG | 0.291828 | 3_2:+75787484 | Msa0425400:CDS |
| GTGCATGGGACCGTGCCTTC+CGG | 0.325746 | 3_2:+75787726 | Msa0425400:CDS |
| GACGATTACTGAGCTAATTA+AGG | 0.344294 | 3_2:+75786517 | Msa0425400:CDS |
| GCCGAGGGCGTGGCCGTGCA+TGG | 0.353826 | 3_2:+75787711 | Msa0425400:CDS |
| CGTGGTCATGGAAGGGGAAG+GGG | 0.358028 | 3_2:+75787472 | Msa0425400:CDS |
| CATGGAAGGGGAAGGGGAAG+AGG | 0.385120 | 3_2:+75787478 | Msa0425400:CDS |
| CGTCCCCTTCCTCGCATCCT+TGG | 0.392491 | 3_2:-75787451 | None:intergenic |
| TGGGATCGTGGGCGTGGCTA+TGG | 0.404622 | 3_2:+75787686 | Msa0425400:CDS |
| TCTTTGTAGCAATGTACAAT+GGG | 0.415329 | 3_2:+75787642 | Msa0425400:intron |
| AGGGGACGTGGTCATGGAAG+GGG | 0.416336 | 3_2:+75787466 | Msa0425400:CDS |
| CACCATTGTCGTAACCCAAC+TGG | 0.418318 | 3_2:-75787776 | None:intergenic |
| TATGGAATATGGTGTTGGTT+GGG | 0.418838 | 3_2:+75787667 | Msa0425400:CDS |
| GGCTATGGTGGCCGAGGGCG+TGG | 0.425853 | 3_2:+75787701 | Msa0425400:CDS |
| CCCATGCACGGCCACGCCCT+CGG | 0.440800 | 3_2:-75787712 | None:intergenic |
| GGGCGTGGCTATGGTGGCCG+AGG | 0.442600 | 3_2:+75787695 | Msa0425400:CDS |
| GGCTATGTTGCCCAACCAGT+TGG | 0.448263 | 3_2:+75787761 | Msa0425400:CDS |
| TATGGTGTTGGTTGGGATCG+TGG | 0.457141 | 3_2:+75787674 | Msa0425400:CDS |
| TTGTCGTAACCCAACTGGTT+GGG | 0.464326 | 3_2:-75787771 | None:intergenic |
| GAAGGGGACGTGGTCATGGA+AGG | 0.470202 | 3_2:+75787464 | Msa0425400:CDS |
| CGAGGAAGGGGACGTGGTCA+TGG | 0.475479 | 3_2:+75787460 | Msa0425400:CDS |
| GTTGGTTGGGATCGTGGGCG+TGG | 0.477701 | 3_2:+75787680 | Msa0425400:CDS |
| GTCCTTGTCCCCGGAAGGCA+CGG | 0.496199 | 3_2:-75787736 | None:intergenic |
| CCGAGGGCGTGGCCGTGCAT+GGG | 0.496548 | 3_2:+75787712 | Msa0425400:CDS |
| TACTTTGTCAAAGAAAGAGC+TGG | 0.498781 | 3_2:+75786847 | Msa0425400:CDS |
| ATGGTGTTGGTTGGGATCGT+GGG | 0.508635 | 3_2:+75787675 | Msa0425400:CDS |
| GCTCACCAAGGATGCGAGGA+AGG | 0.509460 | 3_2:+75787446 | Msa0425400:CDS |
| CAATGAAAACATACGGAAGA+AGG | 0.509927 | 3_2:-75786712 | None:intergenic |
| GCCTTCCGGGGACAAGGACG+TGG | 0.511407 | 3_2:+75787740 | Msa0425400:CDS |
| ACGTGGTCATGGAAGGGGAA+GGG | 0.511503 | 3_2:+75787471 | Msa0425400:CDS |
| TTCTTTGTAGCAATGTACAA+TGG | 0.511866 | 3_2:+75787641 | Msa0425400:intron |
| TCACCAAGGATGCGAGGAAG+GGG | 0.513276 | 3_2:+75787448 | Msa0425400:CDS |
| GTATGGAATATGGTGTTGGT+TGG | 0.515952 | 3_2:+75787666 | Msa0425400:CDS |
| GCTATGTTGCCCAACCAGTT+GGG | 0.516803 | 3_2:+75787762 | Msa0425400:CDS |
| GAAATCGTTCTCAAAGCAAT+GGG | 0.517050 | 3_2:+75786473 | Msa0425400:CDS |
| AGGATGCGAGGAAGGGGACG+TGG | 0.528783 | 3_2:+75787454 | Msa0425400:CDS |
| GACCGTGCCTTCCGGGGACA+AGG | 0.537309 | 3_2:+75787734 | Msa0425400:CDS |
| AAGGGGACGTGGTCATGGAA+GGG | 0.539214 | 3_2:+75787465 | Msa0425400:CDS |
| GATCGTGGGCGTGGCTATGG+TGG | 0.544364 | 3_2:+75787689 | Msa0425400:CDS |
| GAGCTGGATACATCCTCCAC+AGG | 0.550506 | 3_2:+75786863 | Msa0425400:CDS |
| AGAAATCGTTCTCAAAGCAA+TGG | 0.552556 | 3_2:+75786472 | Msa0425400:CDS |
| CTCACCAAGGATGCGAGGAA+GGG | 0.554843 | 3_2:+75787447 | Msa0425400:CDS |
| CATAGCCACGTCCTTGTCCC+CGG | 0.557943 | 3_2:-75787745 | None:intergenic |
| GGCGTGGCTATGGTGGCCGA+GGG | 0.561420 | 3_2:+75787696 | Msa0425400:CDS |
| CAACTGATATAACTGACACA+TGG | 0.565866 | 3_2:+75786672 | Msa0425400:CDS |
| GGAAGGCACGGTCCCATGCA+CGG | 0.571130 | 3_2:-75787724 | None:intergenic |
| ATTGTCGTAACCCAACTGGT+TGG | 0.572944 | 3_2:-75787772 | None:intergenic |
| ACATGGGAACCACTTGAAGA+AGG | 0.580775 | 3_2:+75786689 | Msa0425400:CDS |
| GGAAGAAGGCCTTCTTCAAG+TGG | 0.583553 | 3_2:-75786698 | None:intergenic |
| GCCACGTCCTTGTCCCCGGA+AGG | 0.587486 | 3_2:-75787741 | None:intergenic |
| GACGTGGTCATGGAAGGGGA+AGG | 0.589407 | 3_2:+75787470 | Msa0425400:CDS |
| GCATGGGACCGTGCCTTCCG+GGG | 0.596851 | 3_2:+75787728 | Msa0425400:CDS |
| AACCAGTTGGGTTACGACAA+TGG | 0.598146 | 3_2:+75787774 | Msa0425400:CDS |
| AACTGATATAACTGACACAT+GGG | 0.600887 | 3_2:+75786673 | Msa0425400:CDS |
| GAAGGCTCACCAAGGATGCG+AGG | 0.637231 | 3_2:+75787442 | Msa0425400:intron |
| TGAAAGTTCATACCCTGTGG+AGG | 0.649730 | 3_2:-75786876 | None:intergenic |
| CTTTGTAGCAATGTACAATG+GGG | 0.653996 | 3_2:+75787643 | Msa0425400:intron |
| TTTGTAGCAATGTACAATGG+GGG | 0.656698 | 3_2:+75787644 | Msa0425400:intron |
| TTGAAACAGAAGGCTCACCA+AGG | 0.662596 | 3_2:+75787434 | Msa0425400:intron |
| AGCTGGATACATCCTCCACA+GGG | 0.668533 | 3_2:+75786864 | Msa0425400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTACATAATTTAATCAAA+AGG | - | chr3_2:75787332-75787351 | None:intergenic | 10.0% |
| !!! | TTTTACATAATTTAATCAAA+AGG | - | chr3_2:75787332-75787351 | None:intergenic | 10.0% |
| !!! | TCTTAATTCAACTAATATTT+TGG | + | chr3_2:75786385-75786404 | Msa0425400:intron | 15.0% |
| !! | TAAATATATAGTAACTTCAA+TGG | + | chr3_2:75787164-75787183 | Msa0425400:intron | 15.0% |
| !!! | TCTTAATTCAACTAATATTT+TGG | + | chr3_2:75786385-75786404 | Msa0425400:intron | 15.0% |
| !! | TAAATATATAGTAACTTCAA+TGG | + | chr3_2:75787164-75787183 | Msa0425400:intron | 15.0% |
| !!! | TAATATTTTGGTATTTTGTG+TGG | + | chr3_2:75786397-75786416 | Msa0425400:intron | 20.0% |
| !!! | ATTGTATTTTTTGAAACAGA+AGG | + | chr3_2:75787424-75787443 | Msa0425400:intron | 20.0% |
| !!! | ATTTTAAAAGAACCCATAAA+AGG | - | chr3_2:75787593-75787612 | None:intergenic | 20.0% |
| !!! | TAATATTTTGGTATTTTGTG+TGG | + | chr3_2:75786397-75786416 | Msa0425400:intron | 20.0% |
| !!! | ATTGTATTTTTTGAAACAGA+AGG | + | chr3_2:75787424-75787443 | Msa0425400:intron | 20.0% |
| !!! | ATTTTAAAAGAACCCATAAA+AGG | - | chr3_2:75787593-75787612 | None:intergenic | 20.0% |
| ! | TCTGAAAAACATAGACATAT+CGG | - | chr3_2:75786613-75786632 | None:intergenic | 25.0% |
| ! | GTGAAAACAATGAAAACATA+CGG | - | chr3_2:75786722-75786741 | None:intergenic | 25.0% |
| !! | TAAATCTTACAGAAGTACAA+TGG | - | chr3_2:75787127-75787146 | None:intergenic | 25.0% |
| ! | ATTGTACTTCTGTAAGATTT+AGG | + | chr3_2:75787126-75787145 | Msa0425400:intron | 25.0% |
| ! | TTGTACTTCTGTAAGATTTA+GGG | + | chr3_2:75787127-75787146 | Msa0425400:intron | 25.0% |
| !! | ACATTAGAACTTTCTCATTT+TGG | - | chr3_2:75787297-75787316 | None:intergenic | 25.0% |
| ! | AATTATGTAAAATACTCACG+AGG | + | chr3_2:75787340-75787359 | Msa0425400:intron | 25.0% |
| ! | AGGATATGATGTATGAAATA+AGG | - | chr3_2:75787375-75787394 | None:intergenic | 25.0% |
| ! | TTTGCATATTTAACTGCAAT+TGG | + | chr3_2:75787525-75787544 | Msa0425400:intron | 25.0% |
| ! | TCTGAAAAACATAGACATAT+CGG | - | chr3_2:75786613-75786632 | None:intergenic | 25.0% |
| ! | GTGAAAACAATGAAAACATA+CGG | - | chr3_2:75786722-75786741 | None:intergenic | 25.0% |
| !! | TAAATCTTACAGAAGTACAA+TGG | - | chr3_2:75787127-75787146 | None:intergenic | 25.0% |
| ! | ATTGTACTTCTGTAAGATTT+AGG | + | chr3_2:75787126-75787145 | Msa0425400:intron | 25.0% |
| ! | TTGTACTTCTGTAAGATTTA+GGG | + | chr3_2:75787127-75787146 | Msa0425400:intron | 25.0% |
| !! | ACATTAGAACTTTCTCATTT+TGG | - | chr3_2:75787297-75787316 | None:intergenic | 25.0% |
| ! | AATTATGTAAAATACTCACG+AGG | + | chr3_2:75787340-75787359 | Msa0425400:intron | 25.0% |
| ! | AGGATATGATGTATGAAATA+AGG | - | chr3_2:75787375-75787394 | None:intergenic | 25.0% |
| ! | TTTGCATATTTAACTGCAAT+TGG | + | chr3_2:75787525-75787544 | Msa0425400:intron | 25.0% |
| ACCAACCAATTTAATCTGTA+GGG | - | chr3_2:75786562-75786581 | None:intergenic | 30.0% | |
| AAAAACATAGACATATCGGT+CGG | - | chr3_2:75786609-75786628 | None:intergenic | 30.0% | |
| !! | ATGTCTATGTTTTTCAGAGA+AGG | + | chr3_2:75786615-75786634 | Msa0425400:intron | 30.0% |
| AACTGATATAACTGACACAT+GGG | + | chr3_2:75786673-75786692 | Msa0425400:CDS | 30.0% | |
| ! | TTCATTTTACTTGTGCAGTT+TGG | + | chr3_2:75786793-75786812 | Msa0425400:intron | 30.0% |
| !!! | TTCAATGGTCTTACTTTTTG+TGG | + | chr3_2:75787179-75787198 | Msa0425400:intron | 30.0% |
| ! | GAACTTTCTCATTTTGGATT+TGG | - | chr3_2:75787291-75787310 | None:intergenic | 30.0% |
| !!! | CCTCTAGTTTTTTAGTAACT+AGG | - | chr3_2:75787395-75787414 | None:intergenic | 30.0% |
| CCTAGTTACTAAAAAACTAG+AGG | + | chr3_2:75787392-75787411 | Msa0425400:intron | 30.0% | |
| ! | ATCTTTCTCGAACCTTTTAT+GGG | + | chr3_2:75787578-75787597 | Msa0425400:intron | 30.0% |
| TTCTTTGTAGCAATGTACAA+TGG | + | chr3_2:75787641-75787660 | Msa0425400:intron | 30.0% | |
| TCTTTGTAGCAATGTACAAT+GGG | + | chr3_2:75787642-75787661 | Msa0425400:intron | 30.0% | |
| ACCAACCAATTTAATCTGTA+GGG | - | chr3_2:75786562-75786581 | None:intergenic | 30.0% | |
| AAAAACATAGACATATCGGT+CGG | - | chr3_2:75786609-75786628 | None:intergenic | 30.0% | |
| !! | ATGTCTATGTTTTTCAGAGA+AGG | + | chr3_2:75786615-75786634 | Msa0425400:intron | 30.0% |
| AACTGATATAACTGACACAT+GGG | + | chr3_2:75786673-75786692 | Msa0425400:CDS | 30.0% | |
| ! | TTCATTTTACTTGTGCAGTT+TGG | + | chr3_2:75786793-75786812 | Msa0425400:intron | 30.0% |
| !!! | TTCAATGGTCTTACTTTTTG+TGG | + | chr3_2:75787179-75787198 | Msa0425400:intron | 30.0% |
| ! | GAACTTTCTCATTTTGGATT+TGG | - | chr3_2:75787291-75787310 | None:intergenic | 30.0% |
| !!! | CCTCTAGTTTTTTAGTAACT+AGG | - | chr3_2:75787395-75787414 | None:intergenic | 30.0% |
| CCTAGTTACTAAAAAACTAG+AGG | + | chr3_2:75787392-75787411 | Msa0425400:intron | 30.0% | |
| ! | ATCTTTCTCGAACCTTTTAT+GGG | + | chr3_2:75787578-75787597 | Msa0425400:intron | 30.0% |
| TTCTTTGTAGCAATGTACAA+TGG | + | chr3_2:75787641-75787660 | Msa0425400:intron | 30.0% | |
| TCTTTGTAGCAATGTACAAT+GGG | + | chr3_2:75787642-75787661 | Msa0425400:intron | 30.0% | |
| AGAAATCGTTCTCAAAGCAA+TGG | + | chr3_2:75786472-75786491 | Msa0425400:CDS | 35.0% | |
| GAAATCGTTCTCAAAGCAAT+GGG | + | chr3_2:75786473-75786492 | Msa0425400:CDS | 35.0% | |
| GACGATTACTGAGCTAATTA+AGG | + | chr3_2:75786517-75786536 | Msa0425400:CDS | 35.0% | |
| GAGTTCCCTACAGATTAAAT+TGG | + | chr3_2:75786554-75786573 | Msa0425400:intron | 35.0% | |
| TCCCTACAGATTAAATTGGT+TGG | + | chr3_2:75786558-75786577 | Msa0425400:intron | 35.0% | |
| CACCAACCAATTTAATCTGT+AGG | - | chr3_2:75786563-75786582 | None:intergenic | 35.0% | |
| !! | GTTTTTCAGAGAAGGATTGT+TGG | + | chr3_2:75786623-75786642 | Msa0425400:intron | 35.0% |
| CTGCATCAGAACACTATTAT+TGG | + | chr3_2:75786647-75786666 | Msa0425400:CDS | 35.0% | |
| CAACTGATATAACTGACACA+TGG | + | chr3_2:75786672-75786691 | Msa0425400:CDS | 35.0% | |
| CAATGAAAACATACGGAAGA+AGG | - | chr3_2:75786715-75786734 | None:intergenic | 35.0% | |
| TAGTTTATGTGTGCATAGCA+TGG | + | chr3_2:75786759-75786778 | Msa0425400:intron | 35.0% | |
| AGTTTATGTGTGCATAGCAT+GGG | + | chr3_2:75786760-75786779 | Msa0425400:intron | 35.0% | |
| TACTTTGTCAAAGAAAGAGC+TGG | + | chr3_2:75786847-75786866 | Msa0425400:CDS | 35.0% | |
| TAGATGCCTTATCTCTTAAC+AGG | + | chr3_2:75786950-75786969 | Msa0425400:intron | 35.0% | |
| ACTAAGCCTGTTAAGAGATA+AGG | - | chr3_2:75786959-75786978 | None:intergenic | 35.0% | |
| ! | TTCTGTAAGATTTAGGGTCA+CGG | + | chr3_2:75787133-75787152 | Msa0425400:intron | 35.0% |
| ! | GATCTTTCTCGAACCTTTTA+TGG | + | chr3_2:75787577-75787596 | Msa0425400:intron | 35.0% |
| CTTTGTAGCAATGTACAATG+GGG | + | chr3_2:75787643-75787662 | Msa0425400:intron | 35.0% | |
| TTTGTAGCAATGTACAATGG+GGG | + | chr3_2:75787644-75787663 | Msa0425400:intron | 35.0% | |
| !! | TATGGAATATGGTGTTGGTT+GGG | + | chr3_2:75787667-75787686 | Msa0425400:CDS | 35.0% |
| AGAAATCGTTCTCAAAGCAA+TGG | + | chr3_2:75786472-75786491 | Msa0425400:CDS | 35.0% | |
| GAAATCGTTCTCAAAGCAAT+GGG | + | chr3_2:75786473-75786492 | Msa0425400:CDS | 35.0% | |
| GACGATTACTGAGCTAATTA+AGG | + | chr3_2:75786517-75786536 | Msa0425400:CDS | 35.0% | |
| GAGTTCCCTACAGATTAAAT+TGG | + | chr3_2:75786554-75786573 | Msa0425400:intron | 35.0% | |
| TCCCTACAGATTAAATTGGT+TGG | + | chr3_2:75786558-75786577 | Msa0425400:intron | 35.0% | |
| CACCAACCAATTTAATCTGT+AGG | - | chr3_2:75786563-75786582 | None:intergenic | 35.0% | |
| !! | GTTTTTCAGAGAAGGATTGT+TGG | + | chr3_2:75786623-75786642 | Msa0425400:intron | 35.0% |
| CTGCATCAGAACACTATTAT+TGG | + | chr3_2:75786647-75786666 | Msa0425400:CDS | 35.0% | |
| CAACTGATATAACTGACACA+TGG | + | chr3_2:75786672-75786691 | Msa0425400:CDS | 35.0% | |
| CAATGAAAACATACGGAAGA+AGG | - | chr3_2:75786715-75786734 | None:intergenic | 35.0% | |
| TAGTTTATGTGTGCATAGCA+TGG | + | chr3_2:75786759-75786778 | Msa0425400:intron | 35.0% | |
| AGTTTATGTGTGCATAGCAT+GGG | + | chr3_2:75786760-75786779 | Msa0425400:intron | 35.0% | |
| TACTTTGTCAAAGAAAGAGC+TGG | + | chr3_2:75786847-75786866 | Msa0425400:CDS | 35.0% | |
| TAGATGCCTTATCTCTTAAC+AGG | + | chr3_2:75786950-75786969 | Msa0425400:intron | 35.0% | |
| ACTAAGCCTGTTAAGAGATA+AGG | - | chr3_2:75786959-75786978 | None:intergenic | 35.0% | |
| ! | TTCTGTAAGATTTAGGGTCA+CGG | + | chr3_2:75787133-75787152 | Msa0425400:intron | 35.0% |
| ! | GATCTTTCTCGAACCTTTTA+TGG | + | chr3_2:75787577-75787596 | Msa0425400:intron | 35.0% |
| CTTTGTAGCAATGTACAATG+GGG | + | chr3_2:75787643-75787662 | Msa0425400:intron | 35.0% | |
| TTTGTAGCAATGTACAATGG+GGG | + | chr3_2:75787644-75787663 | Msa0425400:intron | 35.0% | |
| !! | TATGGAATATGGTGTTGGTT+GGG | + | chr3_2:75787667-75787686 | Msa0425400:CDS | 35.0% |
| ! | GCACTATGTGTGTTTTCTGT+AGG | + | chr3_2:75786436-75786455 | Msa0425400:intron | 40.0% |
| ACTGAGCTAATTAAGGTGAG+AGG | + | chr3_2:75786524-75786543 | Msa0425400:intron | 40.0% | |
| CTGAGCTAATTAAGGTGAGA+GGG | + | chr3_2:75786525-75786544 | Msa0425400:intron | 40.0% | |
| TCATGAAAGTTCATACCCTG+TGG | - | chr3_2:75786882-75786901 | None:intergenic | 40.0% | |
| ! | CTTACAGAAGTACAATGGCT+AGG | - | chr3_2:75787122-75787141 | None:intergenic | 40.0% |
| ! | TACAATGGGGGTATGGAATA+TGG | + | chr3_2:75787656-75787675 | Msa0425400:CDS | 40.0% |
| !! | GTATGGAATATGGTGTTGGT+TGG | + | chr3_2:75787666-75787685 | Msa0425400:CDS | 40.0% |
| ! | GCACTATGTGTGTTTTCTGT+AGG | + | chr3_2:75786436-75786455 | Msa0425400:intron | 40.0% |
| ACTGAGCTAATTAAGGTGAG+AGG | + | chr3_2:75786524-75786543 | Msa0425400:intron | 40.0% | |
| CTGAGCTAATTAAGGTGAGA+GGG | + | chr3_2:75786525-75786544 | Msa0425400:intron | 40.0% | |
| TCATGAAAGTTCATACCCTG+TGG | - | chr3_2:75786882-75786901 | None:intergenic | 40.0% | |
| ! | CTTACAGAAGTACAATGGCT+AGG | - | chr3_2:75787122-75787141 | None:intergenic | 40.0% |
| ! | TACAATGGGGGTATGGAATA+TGG | + | chr3_2:75787656-75787675 | Msa0425400:CDS | 40.0% |
| !! | GTATGGAATATGGTGTTGGT+TGG | + | chr3_2:75787666-75787685 | Msa0425400:CDS | 40.0% |
| ! | GTGTGTTTTCTGTAGGCGAA+AGG | + | chr3_2:75786443-75786462 | Msa0425400:intron | 45.0% |
| ACATGGGAACCACTTGAAGA+AGG | + | chr3_2:75786689-75786708 | Msa0425400:CDS | 45.0% | |
| TGAAAGTTCATACCCTGTGG+AGG | - | chr3_2:75786879-75786898 | None:intergenic | 45.0% | |
| TTGAAACAGAAGGCTCACCA+AGG | + | chr3_2:75787434-75787453 | Msa0425400:intron | 45.0% | |
| AGCAATGTACAATGGGGGTA+TGG | + | chr3_2:75787649-75787668 | Msa0425400:intron | 45.0% | |
| TTGTCGTAACCCAACTGGTT+GGG | - | chr3_2:75787774-75787793 | None:intergenic | 45.0% | |
| ATTGTCGTAACCCAACTGGT+TGG | - | chr3_2:75787775-75787794 | None:intergenic | 45.0% | |
| AACCAGTTGGGTTACGACAA+TGG | + | chr3_2:75787774-75787793 | Msa0425400:CDS | 45.0% | |
| ! | GTGTGTTTTCTGTAGGCGAA+AGG | + | chr3_2:75786443-75786462 | Msa0425400:intron | 45.0% |
| ACATGGGAACCACTTGAAGA+AGG | + | chr3_2:75786689-75786708 | Msa0425400:CDS | 45.0% | |
| TGAAAGTTCATACCCTGTGG+AGG | - | chr3_2:75786879-75786898 | None:intergenic | 45.0% | |
| TTGAAACAGAAGGCTCACCA+AGG | + | chr3_2:75787434-75787453 | Msa0425400:intron | 45.0% | |
| AGCAATGTACAATGGGGGTA+TGG | + | chr3_2:75787649-75787668 | Msa0425400:intron | 45.0% | |
| TTGTCGTAACCCAACTGGTT+GGG | - | chr3_2:75787774-75787793 | None:intergenic | 45.0% | |
| ATTGTCGTAACCCAACTGGT+TGG | - | chr3_2:75787775-75787794 | None:intergenic | 45.0% | |
| AACCAGTTGGGTTACGACAA+TGG | + | chr3_2:75787774-75787793 | Msa0425400:CDS | 45.0% | |
| GGAAGAAGGCCTTCTTCAAG+TGG | - | chr3_2:75786701-75786720 | None:intergenic | 50.0% | |
| AGCTGGATACATCCTCCACA+GGG | + | chr3_2:75786864-75786883 | Msa0425400:CDS | 50.0% | |
| ! | GGGGGTATGGAATATGGTGT+TGG | + | chr3_2:75787662-75787681 | Msa0425400:CDS | 50.0% |
| !! | TATGGTGTTGGTTGGGATCG+TGG | + | chr3_2:75787674-75787693 | Msa0425400:CDS | 50.0% |
| !! | ATGGTGTTGGTTGGGATCGT+GGG | + | chr3_2:75787675-75787694 | Msa0425400:CDS | 50.0% |
| GCTATGTTGCCCAACCAGTT+GGG | + | chr3_2:75787762-75787781 | Msa0425400:CDS | 50.0% | |
| CACCATTGTCGTAACCCAAC+TGG | - | chr3_2:75787779-75787798 | None:intergenic | 50.0% | |
| GGAAGAAGGCCTTCTTCAAG+TGG | - | chr3_2:75786701-75786720 | None:intergenic | 50.0% | |
| AGCTGGATACATCCTCCACA+GGG | + | chr3_2:75786864-75786883 | Msa0425400:CDS | 50.0% | |
| ! | GGGGGTATGGAATATGGTGT+TGG | + | chr3_2:75787662-75787681 | Msa0425400:CDS | 50.0% |
| !! | TATGGTGTTGGTTGGGATCG+TGG | + | chr3_2:75787674-75787693 | Msa0425400:CDS | 50.0% |
| !! | ATGGTGTTGGTTGGGATCGT+GGG | + | chr3_2:75787675-75787694 | Msa0425400:CDS | 50.0% |
| GCTATGTTGCCCAACCAGTT+GGG | + | chr3_2:75787762-75787781 | Msa0425400:CDS | 50.0% | |
| CACCATTGTCGTAACCCAAC+TGG | - | chr3_2:75787779-75787798 | None:intergenic | 50.0% | |
| GAGCTGGATACATCCTCCAC+AGG | + | chr3_2:75786863-75786882 | Msa0425400:CDS | 55.0% | |
| CTCACCAAGGATGCGAGGAA+GGG | + | chr3_2:75787447-75787466 | Msa0425400:CDS | 55.0% | |
| TCACCAAGGATGCGAGGAAG+GGG | + | chr3_2:75787448-75787467 | Msa0425400:CDS | 55.0% | |
| AAGGGGACGTGGTCATGGAA+GGG | + | chr3_2:75787465-75787484 | Msa0425400:CDS | 55.0% | |
| ACGTGGTCATGGAAGGGGAA+GGG | + | chr3_2:75787471-75787490 | Msa0425400:CDS | 55.0% | |
| GGCTATGTTGCCCAACCAGT+TGG | + | chr3_2:75787761-75787780 | Msa0425400:CDS | 55.0% | |
| GAGCTGGATACATCCTCCAC+AGG | + | chr3_2:75786863-75786882 | Msa0425400:CDS | 55.0% | |
| CTCACCAAGGATGCGAGGAA+GGG | + | chr3_2:75787447-75787466 | Msa0425400:CDS | 55.0% | |
| TCACCAAGGATGCGAGGAAG+GGG | + | chr3_2:75787448-75787467 | Msa0425400:CDS | 55.0% | |
| AAGGGGACGTGGTCATGGAA+GGG | + | chr3_2:75787465-75787484 | Msa0425400:CDS | 55.0% | |
| ACGTGGTCATGGAAGGGGAA+GGG | + | chr3_2:75787471-75787490 | Msa0425400:CDS | 55.0% | |
| GGCTATGTTGCCCAACCAGT+TGG | + | chr3_2:75787761-75787780 | Msa0425400:CDS | 55.0% | |
| GAAGGCTCACCAAGGATGCG+AGG | + | chr3_2:75787442-75787461 | Msa0425400:intron | 60.0% | |
| GCTCACCAAGGATGCGAGGA+AGG | + | chr3_2:75787446-75787465 | Msa0425400:CDS | 60.0% | |
| GAAGGGGACGTGGTCATGGA+AGG | + | chr3_2:75787464-75787483 | Msa0425400:CDS | 60.0% | |
| AGGGGACGTGGTCATGGAAG+GGG | + | chr3_2:75787466-75787485 | Msa0425400:CDS | 60.0% | |
| GACGTGGTCATGGAAGGGGA+AGG | + | chr3_2:75787470-75787489 | Msa0425400:CDS | 60.0% | |
| CGTGGTCATGGAAGGGGAAG+GGG | + | chr3_2:75787472-75787491 | Msa0425400:CDS | 60.0% | |
| CATGGAAGGGGAAGGGGAAG+AGG | + | chr3_2:75787478-75787497 | Msa0425400:CDS | 60.0% | |
| CATAGCCACGTCCTTGTCCC+CGG | - | chr3_2:75787748-75787767 | None:intergenic | 60.0% | |
| GAAGGCTCACCAAGGATGCG+AGG | + | chr3_2:75787442-75787461 | Msa0425400:intron | 60.0% | |
| GCTCACCAAGGATGCGAGGA+AGG | + | chr3_2:75787446-75787465 | Msa0425400:CDS | 60.0% | |
| GAAGGGGACGTGGTCATGGA+AGG | + | chr3_2:75787464-75787483 | Msa0425400:CDS | 60.0% | |
| AGGGGACGTGGTCATGGAAG+GGG | + | chr3_2:75787466-75787485 | Msa0425400:CDS | 60.0% | |
| GACGTGGTCATGGAAGGGGA+AGG | + | chr3_2:75787470-75787489 | Msa0425400:CDS | 60.0% | |
| CGTGGTCATGGAAGGGGAAG+GGG | + | chr3_2:75787472-75787491 | Msa0425400:CDS | 60.0% | |
| CATGGAAGGGGAAGGGGAAG+AGG | + | chr3_2:75787478-75787497 | Msa0425400:CDS | 60.0% | |
| CATAGCCACGTCCTTGTCCC+CGG | - | chr3_2:75787748-75787767 | None:intergenic | 60.0% | |
| CGTCCCCTTCCTCGCATCCT+TGG | - | chr3_2:75787454-75787473 | None:intergenic | 65.0% | |
| AGGATGCGAGGAAGGGGACG+TGG | + | chr3_2:75787454-75787473 | Msa0425400:CDS | 65.0% | |
| CGAGGAAGGGGACGTGGTCA+TGG | + | chr3_2:75787460-75787479 | Msa0425400:CDS | 65.0% | |
| AGGGGAAGGGGAAGAGGCAG+AGG | + | chr3_2:75787484-75787503 | Msa0425400:CDS | 65.0% | |
| GTTGGTTGGGATCGTGGGCG+TGG | + | chr3_2:75787680-75787699 | Msa0425400:CDS | 65.0% | |
| TGGGATCGTGGGCGTGGCTA+TGG | + | chr3_2:75787686-75787705 | Msa0425400:CDS | 65.0% | |
| GATCGTGGGCGTGGCTATGG+TGG | + | chr3_2:75787689-75787708 | Msa0425400:CDS | 65.0% | |
| ! | GGAAGGCACGGTCCCATGCA+CGG | - | chr3_2:75787727-75787746 | None:intergenic | 65.0% |
| GTGCATGGGACCGTGCCTTC+CGG | + | chr3_2:75787726-75787745 | Msa0425400:CDS | 65.0% | |
| TGCATGGGACCGTGCCTTCC+GGG | + | chr3_2:75787727-75787746 | Msa0425400:CDS | 65.0% | |
| GTCCTTGTCCCCGGAAGGCA+CGG | - | chr3_2:75787739-75787758 | None:intergenic | 65.0% | |
| CGTCCCCTTCCTCGCATCCT+TGG | - | chr3_2:75787454-75787473 | None:intergenic | 65.0% | |
| AGGATGCGAGGAAGGGGACG+TGG | + | chr3_2:75787454-75787473 | Msa0425400:CDS | 65.0% | |
| CGAGGAAGGGGACGTGGTCA+TGG | + | chr3_2:75787460-75787479 | Msa0425400:CDS | 65.0% | |
| AGGGGAAGGGGAAGAGGCAG+AGG | + | chr3_2:75787484-75787503 | Msa0425400:CDS | 65.0% | |
| GTTGGTTGGGATCGTGGGCG+TGG | + | chr3_2:75787680-75787699 | Msa0425400:CDS | 65.0% | |
| TGGGATCGTGGGCGTGGCTA+TGG | + | chr3_2:75787686-75787705 | Msa0425400:CDS | 65.0% | |
| GATCGTGGGCGTGGCTATGG+TGG | + | chr3_2:75787689-75787708 | Msa0425400:CDS | 65.0% | |
| ! | GGAAGGCACGGTCCCATGCA+CGG | - | chr3_2:75787727-75787746 | None:intergenic | 65.0% |
| GTGCATGGGACCGTGCCTTC+CGG | + | chr3_2:75787726-75787745 | Msa0425400:CDS | 65.0% | |
| TGCATGGGACCGTGCCTTCC+GGG | + | chr3_2:75787727-75787746 | Msa0425400:CDS | 65.0% | |
| GTCCTTGTCCCCGGAAGGCA+CGG | - | chr3_2:75787739-75787758 | None:intergenic | 65.0% | |
| GGCGTGGCTATGGTGGCCGA+GGG | + | chr3_2:75787696-75787715 | Msa0425400:CDS | 70.0% | |
| GCATGGGACCGTGCCTTCCG+GGG | + | chr3_2:75787728-75787747 | Msa0425400:CDS | 70.0% | |
| GACCGTGCCTTCCGGGGACA+AGG | + | chr3_2:75787734-75787753 | Msa0425400:CDS | 70.0% | |
| GCCTTCCGGGGACAAGGACG+TGG | + | chr3_2:75787740-75787759 | Msa0425400:CDS | 70.0% | |
| GCCACGTCCTTGTCCCCGGA+AGG | - | chr3_2:75787744-75787763 | None:intergenic | 70.0% | |
| GGCGTGGCTATGGTGGCCGA+GGG | + | chr3_2:75787696-75787715 | Msa0425400:CDS | 70.0% | |
| GCATGGGACCGTGCCTTCCG+GGG | + | chr3_2:75787728-75787747 | Msa0425400:CDS | 70.0% | |
| GACCGTGCCTTCCGGGGACA+AGG | + | chr3_2:75787734-75787753 | Msa0425400:CDS | 70.0% | |
| GCCTTCCGGGGACAAGGACG+TGG | + | chr3_2:75787740-75787759 | Msa0425400:CDS | 70.0% | |
| GCCACGTCCTTGTCCCCGGA+AGG | - | chr3_2:75787744-75787763 | None:intergenic | 70.0% | |
| GGGCGTGGCTATGGTGGCCG+AGG | + | chr3_2:75787695-75787714 | Msa0425400:CDS | 75.0% | |
| GGCTATGGTGGCCGAGGGCG+TGG | + | chr3_2:75787701-75787720 | Msa0425400:CDS | 75.0% | |
| CCCATGCACGGCCACGCCCT+CGG | - | chr3_2:75787715-75787734 | None:intergenic | 75.0% | |
| ! | CCGAGGGCGTGGCCGTGCAT+GGG | + | chr3_2:75787712-75787731 | Msa0425400:CDS | 75.0% |
| GGGCGTGGCTATGGTGGCCG+AGG | + | chr3_2:75787695-75787714 | Msa0425400:CDS | 75.0% | |
| GGCTATGGTGGCCGAGGGCG+TGG | + | chr3_2:75787701-75787720 | Msa0425400:CDS | 75.0% | |
| CCCATGCACGGCCACGCCCT+CGG | - | chr3_2:75787715-75787734 | None:intergenic | 75.0% | |
| ! | CCGAGGGCGTGGCCGTGCAT+GGG | + | chr3_2:75787712-75787731 | Msa0425400:CDS | 75.0% |
| !! | GCCGAGGGCGTGGCCGTGCA+TGG | + | chr3_2:75787711-75787730 | Msa0425400:CDS | 80.0% |
| !! | GCCGAGGGCGTGGCCGTGCA+TGG | + | chr3_2:75787711-75787730 | Msa0425400:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 75786367 | 75787799 | 75786367 | ID=Msa0425400;Name=Msa0425400 |
| chr3_2 | mRNA | 75786367 | 75787799 | 75786367 | ID=Msa0425400-mRNA-1;Parent=Msa0425400;Name=Msa0425400-mRNA-1;_AED=0.42;_eAED=0.44;_QI=0|0|0|0.71|1|1|7|0|155 |
| chr3_2 | exon | 75786367 | 75786372 | 75786367 | ID=Msa0425400-mRNA-1:exon:19498;Parent=Msa0425400-mRNA-1 |
| chr3_2 | exon | 75786458 | 75786538 | 75786458 | ID=Msa0425400-mRNA-1:exon:19499;Parent=Msa0425400-mRNA-1 |
| chr3_2 | exon | 75786632 | 75786720 | 75786632 | ID=Msa0425400-mRNA-1:exon:19500;Parent=Msa0425400-mRNA-1 |
| chr3_2 | exon | 75786811 | 75786885 | 75786811 | ID=Msa0425400-mRNA-1:exon:19501;Parent=Msa0425400-mRNA-1 |
| chr3_2 | exon | 75786972 | 75786976 | 75786972 | ID=Msa0425400-mRNA-1:exon:19502;Parent=Msa0425400-mRNA-1 |
| chr3_2 | exon | 75787443 | 75787505 | 75787443 | ID=Msa0425400-mRNA-1:exon:19503;Parent=Msa0425400-mRNA-1 |
| chr3_2 | exon | 75787651 | 75787799 | 75787651 | ID=Msa0425400-mRNA-1:exon:19504;Parent=Msa0425400-mRNA-1 |
| chr3_2 | CDS | 75786367 | 75786372 | 75786367 | ID=Msa0425400-mRNA-1:cds;Parent=Msa0425400-mRNA-1 |
| chr3_2 | CDS | 75786458 | 75786538 | 75786458 | ID=Msa0425400-mRNA-1:cds;Parent=Msa0425400-mRNA-1 |
| chr3_2 | CDS | 75786632 | 75786720 | 75786632 | ID=Msa0425400-mRNA-1:cds;Parent=Msa0425400-mRNA-1 |
| chr3_2 | CDS | 75786811 | 75786885 | 75786811 | ID=Msa0425400-mRNA-1:cds;Parent=Msa0425400-mRNA-1 |
| chr3_2 | CDS | 75786972 | 75786976 | 75786972 | ID=Msa0425400-mRNA-1:cds;Parent=Msa0425400-mRNA-1 |
| chr3_2 | CDS | 75787443 | 75787505 | 75787443 | ID=Msa0425400-mRNA-1:cds;Parent=Msa0425400-mRNA-1 |
| chr3_2 | CDS | 75787651 | 75787799 | 75787651 | ID=Msa0425400-mRNA-1:cds;Parent=Msa0425400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
