Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625070 | AES86345.1 | 76.056 | 71 | 14 | 1 | 8 | 78 | 1 | 68 | 1.39e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625070 | sp|Q96253|ATP5E_ARATH | 50.000 | 68 | 29 | 2 | 8 | 75 | 7 | 69 | 2.28e-17 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0625070 | 0.825639 | 4.200983e-54 | -8.615850e-47 |
| Msa0006000 | Msa0625070 | 0.800078 | 1.705980e-48 | -8.615850e-47 |
| Msa0016670 | Msa0625070 | 0.843102 | 1.722602e-58 | -8.615850e-47 |
| Msa0017510 | Msa0625070 | 0.842108 | 3.161678e-58 | -8.615850e-47 |
| Msa0027260 | Msa0625070 | 0.816521 | 5.298280e-52 | -8.615850e-47 |
| Msa0028420 | Msa0625070 | 0.810735 | 9.945389e-51 | -8.615850e-47 |
| Msa0028640 | Msa0625070 | 0.803659 | 3.137220e-49 | -8.615850e-47 |
| Msa0032090 | Msa0625070 | 0.830862 | 2.312115e-55 | -8.615850e-47 |
| Msa0032260 | Msa0625070 | 0.812066 | 5.110384e-51 | -8.615850e-47 |
| Msa0032430 | Msa0625070 | 0.815975 | 7.019587e-52 | -8.615850e-47 |
| Msa0032580 | Msa0625070 | 0.805322 | 1.411766e-49 | -8.615850e-47 |
| Msa0032920 | Msa0625070 | -0.830585 | 2.702728e-55 | -8.615850e-47 |
| Msa0032960 | Msa0625070 | -0.805634 | 1.214127e-49 | -8.615850e-47 |
| Msa0040690 | Msa0625070 | 0.840820 | 6.905427e-58 | -8.615850e-47 |
| Msa0043670 | Msa0625070 | -0.810954 | 8.915578e-51 | -8.615850e-47 |
| Msa0074320 | Msa0625070 | 0.804820 | 1.797693e-49 | -8.615850e-47 |
| Msa0078650 | Msa0625070 | 0.811516 | 6.731799e-51 | -8.615850e-47 |
| Msa0079380 | Msa0625070 | 0.819975 | 8.758704e-53 | -8.615850e-47 |
| Msa0089630 | Msa0625070 | 0.804269 | 2.342196e-49 | -8.615850e-47 |
| Msa0090590 | Msa0625070 | 0.802235 | 6.178074e-49 | -8.615850e-47 |
| Msa0094120 | Msa0625070 | 0.825998 | 3.452673e-54 | -8.615850e-47 |
| Msa0094470 | Msa0625070 | 0.800885 | 1.168299e-48 | -8.615850e-47 |
| Msa0110970 | Msa0625070 | 0.836200 | 1.075615e-56 | -8.615850e-47 |
| Msa0615440 | Msa0625070 | 0.819923 | 9.000274e-53 | -8.615850e-47 |
| Msa0625070 | Msa0625720 | 0.804012 | 2.650036e-49 | -8.615850e-47 |
| Msa0625070 | Msa0639430 | 0.806438 | 8.227200e-50 | -8.615850e-47 |
| Msa0625070 | Msa0643220 | 0.815452 | 9.178850e-52 | -8.615850e-47 |
| Msa0625070 | Msa0650020 | 0.800092 | 1.695153e-48 | -8.615850e-47 |
| Msa0625070 | Msa0663390 | 0.802655 | 5.060655e-49 | -8.615850e-47 |
| Msa0625070 | Msa0677290 | 0.800800 | 1.216150e-48 | -8.615850e-47 |
| Msa0625070 | Msa0677410 | 0.806817 | 6.841790e-50 | -8.615850e-47 |
| Msa0625070 | Msa0682330 | 0.829091 | 6.247310e-55 | -8.615850e-47 |
| Msa0625070 | Msa0682900 | 0.829909 | 3.953999e-55 | -8.615850e-47 |
| Msa0625070 | Msa0683570 | 0.804354 | 2.248480e-49 | -8.615850e-47 |
| Msa0625070 | Msa0684500 | 0.802318 | 5.938695e-49 | -8.615850e-47 |
| Msa0625070 | Msa0692080 | 0.806382 | 8.452500e-50 | -8.615850e-47 |
| Msa0625070 | Msa0698490 | 0.823674 | 1.219964e-53 | -8.615850e-47 |
| Msa0625070 | Msa0698660 | 0.826286 | 2.948625e-54 | -8.615850e-47 |
| Msa0625070 | Msa0703230 | 0.835495 | 1.623533e-56 | -8.615850e-47 |
| Msa0625070 | Msa0708520 | 0.822931 | 1.818817e-53 | -8.615850e-47 |
| Msa0625070 | Msa0709500 | 0.806144 | 9.489073e-50 | -8.615850e-47 |
| Msa0625070 | Msa0720820 | 0.803302 | 3.720044e-49 | -8.615850e-47 |
| Msa0625070 | Msa0722810 | 0.821551 | 3.802670e-53 | -8.615850e-47 |
| Msa0625070 | Msa0722960 | 0.812886 | 3.383064e-51 | -8.615850e-47 |
| Msa0625070 | Msa0730430 | 0.808187 | 3.503858e-50 | -8.615850e-47 |
| Msa0625070 | Msa0741240 | 0.814607 | 1.413581e-51 | -8.615850e-47 |
| Msa0625070 | Msa0750880 | 0.845669 | 3.515837e-59 | -8.615850e-47 |
| Msa0625070 | Msa0763830 | 0.812143 | 4.916001e-51 | -8.615850e-47 |
| Msa0625070 | Msa0790850 | 0.800786 | 1.223899e-48 | -8.615850e-47 |
| Msa0625070 | Msa0794670 | 0.802006 | 6.883597e-49 | -8.615850e-47 |
| Msa0625070 | Msa0796530 | 0.825143 | 5.504430e-54 | -8.615850e-47 |
| Msa0625070 | Msa0803890 | 0.805968 | 1.033070e-49 | -8.615850e-47 |
| Msa0625070 | Msa0808270 | 0.813530 | 2.443212e-51 | -8.615850e-47 |
| Msa0625070 | Msa0821760 | 0.803295 | 3.732659e-49 | -8.615850e-47 |
| Msa0625070 | Msa0841940 | 0.810805 | 9.601587e-51 | -8.615850e-47 |
| Msa0625070 | Msa0850960 | 0.820040 | 8.463136e-53 | -8.615850e-47 |
| Msa0625070 | Msa0861870 | 0.818411 | 1.987454e-52 | -8.615850e-47 |
| Msa0625070 | Msa0876200 | 0.821173 | 4.646966e-53 | -8.615850e-47 |
| Msa0625070 | Msa0880140 | 0.839582 | 1.453813e-57 | -8.615850e-47 |
| Msa0625070 | Msa0902760 | 0.833097 | 6.485924e-56 | -8.615850e-47 |
| Msa0625070 | Msa0944190 | 0.806260 | 8.966314e-50 | -8.615850e-47 |
| Msa0625070 | Msa0968590 | 0.824772 | 6.733098e-54 | -8.615850e-47 |
| Msa0625070 | Msa0970420 | 0.821967 | 3.045720e-53 | -8.615850e-47 |
| Msa0625070 | Msa1004600 | 0.801219 | 9.985379e-49 | -8.615850e-47 |
| Msa0625070 | Msa1006840 | 0.818703 | 1.706828e-52 | -8.615850e-47 |
| Msa0625070 | Msa1013400 | 0.839740 | 1.322291e-57 | -8.615850e-47 |
| Msa0625070 | Msa1014540 | 0.801076 | 1.067876e-48 | -8.615850e-47 |
| Msa0625070 | Msa1043690 | 0.803722 | 3.044246e-49 | -8.615850e-47 |
| Msa0625070 | Msa1066490 | 0.805161 | 1.525385e-49 | -8.615850e-47 |
| Msa0625070 | Msa1081150 | 0.828467 | 8.845991e-55 | -8.615850e-47 |
| Msa0625070 | Msa1082700 | 0.801887 | 7.284159e-49 | -8.615850e-47 |
| Msa0625070 | Msa1093530 | 0.835802 | 1.357667e-56 | -8.615850e-47 |
| Msa0625070 | Msa1104140 | 0.829449 | 5.115276e-55 | -8.615850e-47 |
| Msa0625070 | Msa1106700 | 0.809174 | 2.155577e-50 | -8.615850e-47 |
| Msa0625070 | Msa1121440 | 0.807808 | 4.218012e-50 | -8.615850e-47 |
| Msa0625070 | Msa1123380 | 0.807969 | 3.898337e-50 | -8.615850e-47 |
| Msa0625070 | Msa1124110 | 0.801453 | 8.940851e-49 | -8.615850e-47 |
| Msa0625070 | Msa1125760 | 0.802269 | 6.079002e-49 | -8.615850e-47 |
| Msa0625070 | Msa1126510 | 0.809420 | 1.909064e-50 | -8.615850e-47 |
| Msa0625070 | Msa1127890 | 0.832113 | 1.137389e-55 | -8.615850e-47 |
| Msa0625070 | Msa1139810 | 0.807447 | 5.032932e-50 | -8.615850e-47 |
| Msa0625070 | Msa1143650 | 0.809546 | 1.793744e-50 | -8.615850e-47 |
| Msa0625070 | Msa1147900 | 0.833702 | 4.583228e-56 | -8.615850e-47 |
| Msa0625070 | Msa1171360 | 0.807657 | 4.542581e-50 | -8.615850e-47 |
| Msa0625070 | Msa1187840 | 0.834235 | 3.369358e-56 | -8.615850e-47 |
| Msa0625070 | Msa1201650 | 0.824038 | 1.001987e-53 | -8.615850e-47 |
| Msa0625070 | Msa1207270 | 0.824679 | 7.081535e-54 | -8.615850e-47 |
| Msa0625070 | Msa1209460 | 0.827138 | 1.846306e-54 | -8.615850e-47 |
| Msa0625070 | Msa1218600 | 0.832416 | 9.570872e-56 | -8.615850e-47 |
| Msa0625070 | Msa1252190 | 0.822122 | 2.804667e-53 | -8.615850e-47 |
| Msa0625070 | Msa1254610 | 0.833405 | 5.436180e-56 | -8.615850e-47 |
| Msa0625070 | Msa1283170 | 0.805955 | 1.039689e-49 | -8.615850e-47 |
| Msa0625070 | Msa1292830 | 0.834758 | 2.490421e-56 | -8.615850e-47 |
| Msa0625070 | Msa1307950 | 0.806857 | 6.708557e-50 | -8.615850e-47 |
| Msa0625070 | Msa1316780 | 0.825305 | 5.040013e-54 | -8.615850e-47 |
| Msa0625070 | Msa1316830 | 0.815266 | 1.009439e-51 | -8.615850e-47 |
| Msa0625070 | Msa1336710 | 0.800057 | 1.723279e-48 | -8.615850e-47 |
| Msa0625070 | Msa1353060 | 0.839532 | 1.498168e-57 | -8.615850e-47 |
| Msa0625070 | Msa1363330 | 0.800912 | 1.153634e-48 | -8.615850e-47 |
| Msa0625070 | Msa1366600 | 0.812505 | 4.099002e-51 | -8.615850e-47 |
| Msa0625070 | Msa1369150 | 0.802737 | 4.867047e-49 | -8.615850e-47 |
| Msa0625070 | Msa1374120 | 0.834757 | 2.491528e-56 | -8.615850e-47 |
| Msa0625070 | Msa1379760 | 0.802687 | 4.984138e-49 | -8.615850e-47 |
| Msa0625070 | Msa1382560 | 0.804558 | 2.039419e-49 | -8.615850e-47 |
| Msa0625070 | Msa1382620 | 0.811936 | 5.455972e-51 | -8.615850e-47 |
| Msa0625070 | Msa1386600 | 0.801486 | 8.802840e-49 | -8.615850e-47 |
| Msa0625070 | Msa1394290 | 0.813518 | 2.457675e-51 | -8.615850e-47 |
| Msa0625070 | Msa1402590 | 0.808947 | 2.411025e-50 | -8.615850e-47 |
| Msa0625070 | Msa1409870 | 0.802977 | 4.343300e-49 | -8.615850e-47 |
| Msa0625070 | Msa1414490 | 0.834219 | 3.401048e-56 | -8.615850e-47 |
| Msa0625070 | Msa1423350 | 0.805783 | 1.129927e-49 | -8.615850e-47 |
| Msa0625070 | Msa1432700 | 0.806070 | 9.833528e-50 | -8.615850e-47 |
| Msa0625070 | Msa1440260 | -0.806320 | 8.711017e-50 | -8.615850e-47 |
| Msa0625070 | Msa1448690 | 0.811733 | 6.040869e-51 | -8.615850e-47 |
| Msa0625070 | Msa1457910 | 0.818295 | 2.112115e-52 | -8.615850e-47 |
| Msa0625070 | Msa1457920 | 0.816999 | 4.139612e-52 | -8.615850e-47 |
| Msa0124340 | Msa0625070 | 0.814272 | 1.676199e-51 | -8.615850e-47 |
| Msa0126370 | Msa0625070 | 0.811316 | 7.440242e-51 | -8.615850e-47 |
| Msa0127310 | Msa0625070 | 0.803766 | 2.981151e-49 | -8.615850e-47 |
| Msa0128860 | Msa0625070 | 0.802596 | 5.203866e-49 | -8.615850e-47 |
| Msa0136070 | Msa0625070 | 0.822517 | 2.270421e-53 | -8.615850e-47 |
| Msa0136100 | Msa0625070 | 0.806498 | 7.991280e-50 | -8.615850e-47 |
| Msa0157290 | Msa0625070 | 0.841716 | 4.012958e-58 | -8.615850e-47 |
| Msa0164980 | Msa0625070 | 0.815265 | 1.010285e-51 | -8.615850e-47 |
| Msa0168500 | Msa0625070 | 0.805250 | 1.461361e-49 | -8.615850e-47 |
| Msa0172070 | Msa0625070 | 0.819312 | 1.240997e-52 | -8.615850e-47 |
| Msa0172450 | Msa0625070 | 0.807163 | 5.781552e-50 | -8.615850e-47 |
| Msa0172970 | Msa0625070 | 0.801365 | 9.318169e-49 | -8.615850e-47 |
| Msa0174730 | Msa0625070 | 0.804690 | 1.914321e-49 | -8.615850e-47 |
| Msa0182620 | Msa0625070 | -0.818370 | 2.030798e-52 | -8.615850e-47 |
| Msa0186890 | Msa0625070 | 0.838124 | 3.464591e-57 | -8.615850e-47 |
| Msa0187690 | Msa0625070 | 0.802901 | 4.501468e-49 | -8.615850e-47 |
| Msa0187930 | Msa0625070 | 0.816011 | 6.890889e-52 | -8.615850e-47 |
| Msa0189290 | Msa0625070 | 0.811359 | 7.283098e-51 | -8.615850e-47 |
| Msa0193120 | Msa0625070 | 0.809479 | 1.854147e-50 | -8.615850e-47 |
| Msa0194540 | Msa0625070 | 0.823288 | 1.501821e-53 | -8.615850e-47 |
| Msa0197420 | Msa0625070 | 0.806055 | 9.907073e-50 | -8.615850e-47 |
| Msa0225740 | Msa0625070 | 0.832729 | 8.004764e-56 | -8.615850e-47 |
| Msa0227400 | Msa0625070 | 0.810568 | 1.080347e-50 | -8.615850e-47 |
| Msa0231650 | Msa0625070 | 0.819889 | 9.160928e-53 | -8.615850e-47 |
| Msa0369050 | Msa0625070 | 0.818458 | 1.939806e-52 | -8.615850e-47 |
| Msa0376310 | Msa0625070 | 0.805688 | 1.183284e-49 | -8.615850e-47 |
| Msa0385580 | Msa0625070 | 0.821284 | 4.382023e-53 | -8.615850e-47 |
| Msa0391030 | Msa0625070 | 0.819274 | 1.265990e-52 | -8.615850e-47 |
| Msa0395820 | Msa0625070 | 0.805543 | 1.268964e-49 | -8.615850e-47 |
| Msa0402650 | Msa0625070 | 0.805410 | 1.353162e-49 | -8.615850e-47 |
| Msa0410650 | Msa0625070 | 0.801909 | 7.207227e-49 | -8.615850e-47 |
| Msa0417270 | Msa0625070 | 0.821056 | 4.944890e-53 | -8.615850e-47 |
| Msa0417880 | Msa0625070 | 0.803840 | 2.877228e-49 | -8.615850e-47 |
| Msa0425400 | Msa0625070 | 0.819264 | 1.272117e-52 | -8.615850e-47 |
| Msa0481530 | Msa0625070 | 0.800660 | 1.298726e-48 | -8.615850e-47 |
| Msa0244780 | Msa0625070 | 0.807312 | 5.375112e-50 | -8.615850e-47 |
| Msa0244860 | Msa0625070 | 0.811382 | 7.199423e-51 | -8.615850e-47 |
| Msa0257460 | Msa0625070 | 0.848608 | 5.500078e-60 | -8.615850e-47 |
| Msa0260280 | Msa0625070 | 0.800664 | 1.295991e-48 | -8.615850e-47 |
| Msa0262310 | Msa0625070 | 0.808534 | 2.953952e-50 | -8.615850e-47 |
| Msa0268130 | Msa0625070 | 0.821143 | 4.721627e-53 | -8.615850e-47 |
| Msa0280610 | Msa0625070 | 0.804770 | 1.841996e-49 | -8.615850e-47 |
| Msa0283450 | Msa0625070 | 0.802162 | 6.393612e-49 | -8.615850e-47 |
| Msa0283520 | Msa0625070 | 0.807965 | 3.905932e-50 | -8.615850e-47 |
| Msa0287650 | Msa0625070 | 0.808774 | 2.625240e-50 | -8.615850e-47 |
| Msa0292400 | Msa0625070 | 0.819978 | 8.744988e-53 | -8.615850e-47 |
| Msa0296740 | Msa0625070 | 0.826861 | 2.149963e-54 | -8.615850e-47 |
| Msa0298990 | Msa0625070 | 0.813572 | 2.392163e-51 | -8.615850e-47 |
| Msa0299870 | Msa0625070 | 0.808463 | 3.058632e-50 | -8.615850e-47 |
| Msa0300690 | Msa0625070 | 0.802857 | 4.598544e-49 | -8.615850e-47 |
| Msa0304260 | Msa0625070 | 0.804462 | 2.135560e-49 | -8.615850e-47 |
| Msa0304300 | Msa0625070 | 0.805638 | 1.212246e-49 | -8.615850e-47 |
| Msa0316810 | Msa0625070 | 0.805773 | 1.135581e-49 | -8.615850e-47 |
| Msa0332000 | Msa0625070 | 0.806317 | 8.722643e-50 | -8.615850e-47 |
| Msa0336040 | Msa0625070 | -0.805651 | 1.204380e-49 | -8.615850e-47 |
| Msa0337620 | Msa0625070 | 0.813938 | 1.986984e-51 | -8.615850e-47 |
| Msa0508630 | Msa0625070 | 0.808688 | 2.739013e-50 | -8.615850e-47 |
| Msa0529680 | Msa0625070 | 0.874570 | 6.090167e-68 | -8.615850e-47 |
| Msa0529890 | Msa0625070 | 0.801469 | 8.875064e-49 | -8.615850e-47 |
| Msa0541860 | Msa0625070 | 0.838820 | 2.291916e-57 | -8.615850e-47 |
| Msa0546680 | Msa0625070 | 0.819526 | 1.109068e-52 | -8.615850e-47 |
| Msa0547360 | Msa0625070 | 0.825915 | 3.613472e-54 | -8.615850e-47 |
| Msa0547720 | Msa0625070 | 0.826525 | 2.586294e-54 | -8.615850e-47 |
| Msa0557070 | Msa0625070 | 0.823522 | 1.324096e-53 | -8.615850e-47 |
| Msa0565960 | Msa0625070 | 0.812108 | 5.003797e-51 | -8.615850e-47 |
| Msa0568820 | Msa0625070 | 0.802021 | 6.836419e-49 | -8.615850e-47 |
| Msa0569200 | Msa0625070 | 0.836211 | 1.068763e-56 | -8.615850e-47 |
| Msa0574890 | Msa0625070 | 0.805026 | 1.628567e-49 | -8.615850e-47 |
| Msa0585560 | Msa0625070 | 0.803900 | 2.795431e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625070 | MtrunA17_Chr4g0000551 | 76.056 | 71 | 14 | 1 | 8 | 78 | 1 | 68 | 1.28e-33 | 110 |
| Msa0625070 | MtrunA17_Chr5g0417121 | 60.000 | 65 | 23 | 2 | 1 | 65 | 1 | 62 | 7.33e-21 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625070 | AT1G51650.1 | 50.000 | 68 | 29 | 2 | 8 | 75 | 7 | 69 | 2.32e-18 | 72.0 |
Find 17 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGACAGCCAATCTTATT+AGG | 0.245215 | 4_3:+4072440 | Msa0625070:CDS |
| GCAGAGGAAGAGTAGCGATT+TGG | 0.385613 | 4_3:+4072383 | Msa0625070:CDS |
| AAGGCAATTCCTAATAAGAT+TGG | 0.392366 | 4_3:-4072449 | None:intergenic |
| TCTTATTAGGAATTGCCTTA+AGG | 0.405336 | 4_3:+4072453 | Msa0625070:CDS |
| GTAGCGATTTGGAGAGCAGC+AGG | 0.455679 | 4_3:+4072394 | Msa0625070:CDS |
| AATAAGATTGGCTGTCAAGT+TGG | 0.465236 | 4_3:-4072437 | None:intergenic |
| GTAACGAAAACAAGTGTAAG+AGG | 0.479461 | 4_3:+4072308 | Msa0625070:five_prime_UTR |
| ACATGGATCGACAGTCATTC+CGG | 0.483118 | 4_3:+4072535 | Msa0625070:CDS |
| CGATCAATGGCGTCAGGCAG+AGG | 0.495109 | 4_3:+4072367 | Msa0625070:exon |
| GATAATCGATCAATGGCGTC+AGG | 0.508621 | 4_3:+4072361 | Msa0625070:exon |
| CGTATCAGATAATCGATCAA+TGG | 0.522049 | 4_3:+4072354 | Msa0625070:exon |
| TTCAGTACTTGCTTCCCACA+TGG | 0.547985 | 4_3:+4072518 | Msa0625070:CDS |
| AGCAAATATTATTCTCGACA+TGG | 0.585822 | 4_3:+4074975 | Msa0625070:intron |
| TAGCGATTTGGAGAGCAGCA+GGG | 0.642009 | 4_3:+4072395 | Msa0625070:CDS |
| GAATGACTGTCGATCCATGT+GGG | 0.656324 | 4_3:-4072532 | None:intergenic |
| GGAATGACTGTCGATCCATG+TGG | 0.711549 | 4_3:-4072533 | None:intergenic |
| GCAAGAAGCATTAACCCACG+CGG | 0.807767 | 4_3:+4075002 | Msa0625070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATTTTCTTAAGTTATTA+CGG | + | chr4_3:4073037-4073056 | Msa0625070:intron | 15.0% |
| !!! | ATTGTTTTCATTATTATTAG+TGG | + | chr4_3:4073312-4073331 | Msa0625070:intron | 15.0% |
| !!! | ATTTTTCTTTGGAAAATAAT+TGG | + | chr4_3:4074047-4074066 | Msa0625070:intron | 15.0% |
| !!! | ATTTGAATGTGTTTTTTAAA+GGG | - | chr4_3:4074167-4074186 | None:intergenic | 15.0% |
| !! | TATACAAAACTAAATAAACT+TGG | - | chr4_3:4074623-4074642 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTTTCTAAGAACT+CGG | - | chr4_3:4072716-4072735 | None:intergenic | 20.0% |
| !! | CCTATCATCTTAATTAATTA+GGG | - | chr4_3:4072904-4072923 | None:intergenic | 20.0% |
| !! | CCTAATTAATTAAGATGATA+GGG | + | chr4_3:4072902-4072921 | Msa0625070:intron | 20.0% |
| !!! | TCATTTTCTTAAGTTATTAC+GGG | + | chr4_3:4073038-4073057 | Msa0625070:intron | 20.0% |
| !!! | ATTTTGTCTCAAAAATATCA+TGG | - | chr4_3:4073448-4073467 | None:intergenic | 20.0% |
| !!! | CAATTTAGTCTAAAATATCA+TGG | - | chr4_3:4073568-4073587 | None:intergenic | 20.0% |
| !!! | ATATTTTAGACTAAATTGAG+AGG | + | chr4_3:4073570-4073589 | Msa0625070:intron | 20.0% |
| !! | TCAATTAAACAGAAATGAAA+TGG | - | chr4_3:4073807-4073826 | None:intergenic | 20.0% |
| !! | TTCATTTCTGTTTAATTGAT+TGG | + | chr4_3:4073808-4073827 | Msa0625070:intron | 20.0% |
| !!! | TTTTGGTAAAGATTTTTCTT+TGG | + | chr4_3:4074036-4074055 | Msa0625070:intron | 20.0% |
| !!! | AGAATTTTATCGCTTTTAAT+CGG | - | chr4_3:4074094-4074113 | None:intergenic | 20.0% |
| !!! | CATTTGAATGTGTTTTTTAA+AGG | - | chr4_3:4074168-4074187 | None:intergenic | 20.0% |
| !!! | TTTAATGTGATGTTTTCATT+AGG | + | chr4_3:4074313-4074332 | Msa0625070:intron | 20.0% |
| !! | ATCATAACCAAAAAAGAAAA+CGG | - | chr4_3:4074818-4074837 | None:intergenic | 20.0% |
| !!! | ATCTTGTTTGTAATAATTTG+AGG | + | chr4_3:4074876-4074895 | Msa0625070:intron | 20.0% |
| ! | CCATAATGTTAACTTTCTTA+GGG | + | chr4_3:4072809-4072828 | Msa0625070:intron | 25.0% |
| ! | CCCTAATTAATTAAGATGAT+AGG | + | chr4_3:4072901-4072920 | Msa0625070:intron | 25.0% |
| ! | CCCTATCATCTTAATTAATT+AGG | - | chr4_3:4072905-4072924 | None:intergenic | 25.0% |
| !!! | GAACACATTTTTTAGATTGA+AGG | + | chr4_3:4072942-4072961 | Msa0625070:intron | 25.0% |
| ! | CTTTAGTATCTTGTCTATAT+CGG | + | chr4_3:4073073-4073092 | Msa0625070:intron | 25.0% |
| ! | AGATGATTTAGAAACTACTT+TGG | + | chr4_3:4073133-4073152 | Msa0625070:intron | 25.0% |
| !!! | CATTTTCATTGATTTCTGAA+AGG | - | chr4_3:4073284-4073303 | None:intergenic | 25.0% |
| ! | TCATTTAATTACCTAACTTG+TGG | + | chr4_3:4073643-4073662 | Msa0625070:intron | 25.0% |
| ! | TTTGTGCTTTATGAAGAAAA+GGG | - | chr4_3:4073717-4073736 | None:intergenic | 25.0% |
| !! | TTTTGTGCTTTATGAAGAAA+AGG | - | chr4_3:4073718-4073737 | None:intergenic | 25.0% |
| !!! | CTTTTTCAAACTTTTGTCAT+TGG | + | chr4_3:4073850-4073869 | Msa0625070:intron | 25.0% |
| !!! | CAATGAGTTTTGCTTTAAAT+TGG | + | chr4_3:4074114-4074133 | Msa0625070:intron | 25.0% |
| ! | ATTTCACTTCGAATCATAAT+TGG | + | chr4_3:4074211-4074230 | Msa0625070:intron | 25.0% |
| ! | TATTGATCTTAATCAGTTTG+AGG | - | chr4_3:4074250-4074269 | None:intergenic | 25.0% |
| ! | ATGAAAACATCACATTAAAG+TGG | - | chr4_3:4074312-4074331 | None:intergenic | 25.0% |
| !! | ATACATCTAAAACTCTAGAA+AGG | - | chr4_3:4074794-4074813 | None:intergenic | 25.0% |
| !! | ATGTATTCCGTTTTCTTTTT+TGG | + | chr4_3:4074808-4074827 | Msa0625070:intron | 25.0% |
| AAGGCAATTCCTAATAAGAT+TGG | - | chr4_3:4072452-4072471 | None:intergenic | 30.0% | |
| TCTTATTAGGAATTGCCTTA+AGG | + | chr4_3:4072453-4072472 | Msa0625070:CDS | 30.0% | |
| GGTTTCAAACTATTGAGTAT+TGG | + | chr4_3:4072657-4072676 | Msa0625070:intron | 30.0% | |
| GCCATAATGTTAACTTTCTT+AGG | + | chr4_3:4072808-4072827 | Msa0625070:intron | 30.0% | |
| CCCTAAGAAAGTTAACATTA+TGG | - | chr4_3:4072812-4072831 | None:intergenic | 30.0% | |
| ! | CAAGCTTTGTAGAAACAAAT+GGG | - | chr4_3:4072849-4072868 | None:intergenic | 30.0% |
| ! | TCAAGCTTTGTAGAAACAAA+TGG | - | chr4_3:4072850-4072869 | None:intergenic | 30.0% |
| !! | ATTTGTTTCTACAAAGCTTG+AGG | + | chr4_3:4072849-4072868 | Msa0625070:intron | 30.0% |
| !! | TTTGTTTCTACAAAGCTTGA+GGG | + | chr4_3:4072850-4072869 | Msa0625070:intron | 30.0% |
| GAAGATAAAAATGCTAGCTA+GGG | - | chr4_3:4073349-4073368 | None:intergenic | 30.0% | |
| AGAAGATAAAAATGCTAGCT+AGG | - | chr4_3:4073350-4073369 | None:intergenic | 30.0% | |
| ! | GAGAGGTTATTCTAAAGAAA+TGG | + | chr4_3:4073587-4073606 | Msa0625070:intron | 30.0% |
| AAAGGATTATCTCAGAACAT+GGG | - | chr4_3:4073741-4073760 | None:intergenic | 30.0% | |
| AAAAGGATTATCTCAGAACA+TGG | - | chr4_3:4073742-4073761 | None:intergenic | 30.0% | |
| ! | GATAATCCTTTTCTGTTTAG+TGG | + | chr4_3:4073750-4073769 | Msa0625070:intron | 30.0% |
| !!! | CTTTTAATCGGTTTGAAGTT+TGG | - | chr4_3:4074082-4074101 | None:intergenic | 30.0% |
| ! | AAATGACACTTACGTGATTT+TGG | + | chr4_3:4074183-4074202 | Msa0625070:intron | 30.0% |
| ! | ATCTTAATCAGTTTGAGGTT+TGG | - | chr4_3:4074245-4074264 | None:intergenic | 30.0% |
| ! | CCAATTTGAAGTAAAACTCA+AGG | - | chr4_3:4074281-4074300 | None:intergenic | 30.0% |
| ! | CCTTGAGTTTTACTTCAAAT+TGG | + | chr4_3:4074278-4074297 | Msa0625070:intron | 30.0% |
| !!! | TACAAGTGTACCTCTTTTTT+TGG | - | chr4_3:4074465-4074484 | None:intergenic | 30.0% |
| ! | TAAAAGAGGTACACTTGTTA+GGG | + | chr4_3:4074483-4074502 | Msa0625070:intron | 30.0% |
| !!! | TCTTTTTTGGTTATGATGTG+TGG | + | chr4_3:4074821-4074840 | Msa0625070:intron | 30.0% |
| AGATGATAATATCCCTTCAT+AGG | + | chr4_3:4074922-4074941 | Msa0625070:intron | 30.0% | |
| AGCAAATATTATTCTCGACA+TGG | + | chr4_3:4074975-4074994 | Msa0625070:intron | 30.0% | |
| GTAACGAAAACAAGTGTAAG+AGG | + | chr4_3:4072308-4072327 | Msa0625070:five_prime_UTR | 35.0% | |
| CGTATCAGATAATCGATCAA+TGG | + | chr4_3:4072354-4072373 | Msa0625070:exon | 35.0% | |
| ! | AATAAGATTGGCTGTCAAGT+TGG | - | chr4_3:4072440-4072459 | None:intergenic | 35.0% |
| ACTTGACAGCCAATCTTATT+AGG | + | chr4_3:4072440-4072459 | Msa0625070:CDS | 35.0% | |
| !! | GAGAGAATTTGAGTTTTGTG+AGG | - | chr4_3:4072481-4072500 | None:intergenic | 35.0% |
| AGAAGAGAGAAAGAGAAAGA+GGG | - | chr4_3:4072577-4072596 | None:intergenic | 35.0% | |
| AAGAAGAGAGAAAGAGAAAG+AGG | - | chr4_3:4072578-4072597 | None:intergenic | 35.0% | |
| GCTTAAACAATGTCTCTTGT+TGG | + | chr4_3:4072768-4072787 | Msa0625070:intron | 35.0% | |
| TCTTGTTGGAACTTGAGTTT+GGG | + | chr4_3:4072782-4072801 | Msa0625070:intron | 35.0% | |
| !! | TTTTAGATTGAAGGTGTGAG+TGG | + | chr4_3:4072951-4072970 | Msa0625070:intron | 35.0% |
| !! | ACACACATATTTTGTTGTGC+CGG | - | chr4_3:4073003-4073022 | None:intergenic | 35.0% |
| CATCTCAAAATTTGTCCCAT+AGG | - | chr4_3:4073118-4073137 | None:intergenic | 35.0% | |
| ! | ACTACTTTGGAGAGAAATTG+AGG | + | chr4_3:4073146-4073165 | Msa0625070:intron | 35.0% |
| ! | CTACTTTGGAGAGAAATTGA+GGG | + | chr4_3:4073147-4073166 | Msa0625070:intron | 35.0% |
| AATACTCCACTTCACTTCAT+CGG | - | chr4_3:4073255-4073274 | None:intergenic | 35.0% | |
| ! | TTCTAAAGAAATGGTGAGTG+TGG | + | chr4_3:4073596-4073615 | Msa0625070:intron | 35.0% |
| TCATTGCCACTAAACAGAAA+AGG | - | chr4_3:4073759-4073778 | None:intergenic | 35.0% | |
| AGAAATGAAATGGAAACGCA+GGG | - | chr4_3:4073797-4073816 | None:intergenic | 35.0% | |
| TCGACAAATAGATGTTACAC+AGG | - | chr4_3:4073954-4073973 | None:intergenic | 35.0% | |
| ACATTCAACTCACACTTACA+TGG | + | chr4_3:4074013-4074032 | Msa0625070:intron | 35.0% | |
| ! | AACTCACACTTACATGGTTT+TGG | + | chr4_3:4074019-4074038 | Msa0625070:intron | 35.0% |
| ACTGTGTGAAACTGTGTTTA+AGG | - | chr4_3:4074415-4074434 | None:intergenic | 35.0% | |
| CACTTAGAAGCCAAAAAAAG+AGG | + | chr4_3:4074452-4074471 | Msa0625070:intron | 35.0% | |
| ! | AAGAGGTACACTTGTAAAAG+AGG | + | chr4_3:4074469-4074488 | Msa0625070:intron | 35.0% |
| ! | GTAAAAGAGGTACACTTGTT+AGG | + | chr4_3:4074482-4074501 | Msa0625070:intron | 35.0% |
| TTAGGGATCTAAGGAGAAAA+GGG | + | chr4_3:4074500-4074519 | Msa0625070:intron | 35.0% | |
| CCATGCAAATCCAAAATTCA+GGG | - | chr4_3:4074853-4074872 | None:intergenic | 35.0% | |
| ACCATGCAAATCCAAAATTC+AGG | - | chr4_3:4074854-4074873 | None:intergenic | 35.0% | |
| AGTGAGATTCATCCTATGAA+GGG | - | chr4_3:4074937-4074956 | None:intergenic | 35.0% | |
| AAGTGAGATTCATCCTATGA+AGG | - | chr4_3:4074938-4074957 | None:intergenic | 35.0% | |
| !! | GAGTTTTGTGAGGTTCCTTA+AGG | - | chr4_3:4072471-4072490 | None:intergenic | 40.0% |
| AAGAGAGAAAGAGAAAGAGG+GGG | - | chr4_3:4072575-4072594 | None:intergenic | 40.0% | |
| GAAGAGAGAAAGAGAAAGAG+GGG | - | chr4_3:4072576-4072595 | None:intergenic | 40.0% | |
| TTTACCCTTCCTTCATCACT+TGG | + | chr4_3:4072617-4072636 | Msa0625070:intron | 40.0% | |
| TTACCCTTCCTTCATCACTT+GGG | + | chr4_3:4072618-4072637 | Msa0625070:intron | 40.0% | |
| CTCTTGTTGGAACTTGAGTT+TGG | + | chr4_3:4072781-4072800 | Msa0625070:intron | 40.0% | |
| GCTTTGTAGAAACAAATGGG+TGG | - | chr4_3:4072846-4072865 | None:intergenic | 40.0% | |
| ! | TATCGGTGCTTCATAGATAG+AGG | + | chr4_3:4073090-4073109 | Msa0625070:intron | 40.0% |
| ! | ATCGGTGCTTCATAGATAGA+GGG | + | chr4_3:4073091-4073110 | Msa0625070:intron | 40.0% |
| TTCATAGATAGAGGGACCTA+TGG | + | chr4_3:4073099-4073118 | Msa0625070:intron | 40.0% | |
| TCATAGATAGAGGGACCTAT+GGG | + | chr4_3:4073100-4073119 | Msa0625070:intron | 40.0% | |
| AAGAAACCGATGAAGTGAAG+TGG | + | chr4_3:4073246-4073265 | Msa0625070:intron | 40.0% | |
| !! | AAATTCTGGTGCCACAAGTT+AGG | - | chr4_3:4073657-4073676 | None:intergenic | 40.0% |
| !! | AGCGATGAGTACTGAAATTC+TGG | - | chr4_3:4073671-4073690 | None:intergenic | 40.0% |
| TTCAGTACTCATCGCTACAA+TGG | + | chr4_3:4073675-4073694 | Msa0625070:intron | 40.0% | |
| TACTCATCGCTACAATGGTT+AGG | + | chr4_3:4073680-4073699 | Msa0625070:intron | 40.0% | |
| CAGAAATGAAATGGAAACGC+AGG | - | chr4_3:4073798-4073817 | None:intergenic | 40.0% | |
| AGGGTAACTTCACATTACAG+TGG | - | chr4_3:4074148-4074167 | None:intergenic | 40.0% | |
| ! | GTACACTTGTTAGGGATCTA+AGG | + | chr4_3:4074491-4074510 | Msa0625070:intron | 40.0% |
| GTTAGGGATCTAAGGAGAAA+AGG | + | chr4_3:4074499-4074518 | Msa0625070:intron | 40.0% | |
| GGCGTTAAATGCAAATCATC+AGG | - | chr4_3:4074602-4074621 | None:intergenic | 40.0% | |
| TCACTGAAACGCATTCATGA+TGG | + | chr4_3:4074726-4074745 | Msa0625070:intron | 40.0% | |
| ! | CCCTGAATTTTGGATTTGCA+TGG | + | chr4_3:4074850-4074869 | Msa0625070:intron | 40.0% |
| GATAATCGATCAATGGCGTC+AGG | + | chr4_3:4072361-4072380 | Msa0625070:exon | 45.0% | |
| TTCAGTACTTGCTTCCCACA+TGG | + | chr4_3:4072518-4072537 | Msa0625070:CDS | 45.0% | |
| GAATGACTGTCGATCCATGT+GGG | - | chr4_3:4072535-4072554 | None:intergenic | 45.0% | |
| ACATGGATCGACAGTCATTC+CGG | + | chr4_3:4072535-4072554 | Msa0625070:CDS | 45.0% | |
| CAACCCAAGTGATGAAGGAA+GGG | - | chr4_3:4072624-4072643 | None:intergenic | 45.0% | |
| TCAACCCAAGTGATGAAGGA+AGG | - | chr4_3:4072625-4072644 | None:intergenic | 45.0% | |
| TAGGTCAACCCAAGTGATGA+AGG | - | chr4_3:4072629-4072648 | None:intergenic | 45.0% | |
| !! | TTCATCACTTGGGTTGACCT+AGG | + | chr4_3:4072628-4072647 | Msa0625070:intron | 45.0% |
| ! | AGTTTGAAACCCCAAGACCT+AGG | - | chr4_3:4072648-4072667 | None:intergenic | 45.0% |
| !! | CTATTGAGTATTGGAGCGCT+TGG | + | chr4_3:4072666-4072685 | Msa0625070:intron | 45.0% |
| ! | ATTGGAGCGCTTGGATTAAC+CGG | + | chr4_3:4072675-4072694 | Msa0625070:intron | 45.0% |
| ! | TTTCTAAGAACTCGGCATCC+GGG | - | chr4_3:4072708-4072727 | None:intergenic | 45.0% |
| ! | CTTTCTAAGAACTCGGCATC+CGG | - | chr4_3:4072709-4072728 | None:intergenic | 45.0% |
| GAGTGGTGTCTAACATGTGT+TGG | + | chr4_3:4072968-4072987 | Msa0625070:intron | 45.0% | |
| AGAAATGGTGAGTGTGGAGT+AGG | + | chr4_3:4073602-4073621 | Msa0625070:intron | 45.0% | |
| TGTGGAGTAGGAACTAGGAA+TGG | + | chr4_3:4073614-4073633 | Msa0625070:intron | 45.0% | |
| TGAAATGGAAACGCAGGGAA+GGG | - | chr4_3:4073792-4073811 | None:intergenic | 45.0% | |
| ATGAAATGGAAACGCAGGGA+AGG | - | chr4_3:4073793-4073812 | None:intergenic | 45.0% | |
| !! | CTCTGGGATGTCTGTATGAA+TGG | - | chr4_3:4074692-4074711 | None:intergenic | 45.0% |
| CATTCATACAGACATCCCAG+AGG | + | chr4_3:4074690-4074709 | Msa0625070:intron | 45.0% | |
| ! | GAAGCTAATCTGAGATCTGC+TGG | + | chr4_3:4074748-4074767 | Msa0625070:intron | 45.0% |
| GCAGAGGAAGAGTAGCGATT+TGG | + | chr4_3:4072383-4072402 | Msa0625070:CDS | 50.0% | |
| ! | TAGCGATTTGGAGAGCAGCA+GGG | + | chr4_3:4072395-4072414 | Msa0625070:CDS | 50.0% |
| GGAATGACTGTCGATCCATG+TGG | - | chr4_3:4072536-4072555 | None:intergenic | 50.0% | |
| ! | GGGGGTCTTACTGAGTTTTC+CGG | - | chr4_3:4072557-4072576 | None:intergenic | 50.0% |
| !! | ACTTGGGTTGACCTAGGTCT+TGG | + | chr4_3:4072634-4072653 | Msa0625070:intron | 50.0% |
| !! | CTTGGGTTGACCTAGGTCTT+GGG | + | chr4_3:4072635-4072654 | Msa0625070:intron | 50.0% |
| !! | TTGGGTTGACCTAGGTCTTG+GGG | + | chr4_3:4072636-4072655 | Msa0625070:intron | 50.0% |
| ! | TTCTAAGAACTCGGCATCCG+GGG | - | chr4_3:4072707-4072726 | None:intergenic | 50.0% |
| GTGAGTGTGGAGTAGGAACT+AGG | + | chr4_3:4073609-4073628 | Msa0625070:intron | 50.0% | |
| GGGATCTAAGGAGAAAAGGG+TGG | + | chr4_3:4074503-4074522 | Msa0625070:intron | 50.0% | |
| GACGTCGTCTTGATTCCTCT+GGG | - | chr4_3:4074708-4074727 | None:intergenic | 50.0% | |
| TGACGTCGTCTTGATTCCTC+TGG | - | chr4_3:4074709-4074728 | None:intergenic | 50.0% | |
| ! | GTGGCAGATGCCCTGAATTT+TGG | + | chr4_3:4074840-4074859 | Msa0625070:intron | 50.0% |
| ! | GTAGCGATTTGGAGAGCAGC+AGG | + | chr4_3:4072394-4072413 | Msa0625070:CDS | 55.0% |
| GGATTAACCGGTCCTTTCCC+CGG | + | chr4_3:4072687-4072706 | Msa0625070:intron | 55.0% | |
| ! | CATGTGTTGGTGTGCGACAC+CGG | + | chr4_3:4072981-4073000 | Msa0625070:intron | 55.0% |
| CGATCAATGGCGTCAGGCAG+AGG | + | chr4_3:4072367-4072386 | Msa0625070:exon | 60.0% | |
| AGAACTCGGCATCCGGGGAA+AGG | - | chr4_3:4072702-4072721 | None:intergenic | 60.0% | |
| ! | AACGCAGGGAAGGGTGTGAG+TGG | - | chr4_3:4073783-4073802 | None:intergenic | 60.0% |
| TCGGCATCCGGGGAAAGGAC+CGG | - | chr4_3:4072697-4072716 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 4072297 | 4075023 | 4072297 | ID=Msa0625070;Name=Msa0625070 |
| chr4_3 | mRNA | 4072297 | 4075023 | 4072297 | ID=Msa0625070-mRNA-1;Parent=Msa0625070;Name=Msa0625070-mRNA-1;_AED=0.30;_eAED=0.30;_QI=76|0|0.5|0.5|1|1|2|0|80 |
| chr4_3 | exon | 4072297 | 4072565 | 4072297 | ID=Msa0625070-mRNA-1:exon:955;Parent=Msa0625070-mRNA-1 |
| chr4_3 | exon | 4074977 | 4075023 | 4074977 | ID=Msa0625070-mRNA-1:exon:956;Parent=Msa0625070-mRNA-1 |
| chr4_3 | five_prime_UTR | 4072297 | 4072372 | 4072297 | ID=Msa0625070-mRNA-1:five_prime_utr;Parent=Msa0625070-mRNA-1 |
| chr4_3 | CDS | 4072373 | 4072565 | 4072373 | ID=Msa0625070-mRNA-1:cds;Parent=Msa0625070-mRNA-1 |
| chr4_3 | CDS | 4074977 | 4075023 | 4074977 | ID=Msa0625070-mRNA-1:cds;Parent=Msa0625070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
