AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012651

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012651.t1 MTR_4g132300 97.712 437 10 0 1 437 1 437 0.0 884
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012651.t1 AT1G11800 56.027 448 160 6 2 437 19 441 9.84e-169 481

Find 100 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAACATCTGATCCCATTT+TGG 0.157885 8.1:+1772984 None:intergenic
ATCATTTAGCAACTCTATAA+TGG 0.245684 8.1:-1773099 MS.gene012651:CDS
CATGATTTGCAGGACCATTT+TGG 0.249570 8.1:+1774417 None:intergenic
TAAAACGATCTAATCGCTTT+TGG 0.250022 8.1:+1772745 None:intergenic
CTTGTCCGGCCCCTCCAAAA+TGG 0.302988 8.1:-1772998 MS.gene012651:CDS
CCACTAGAGAGGGTTGATTC+TGG 0.306873 8.1:-1774078 MS.gene012651:CDS
TATAGAGTTGCTAAATGATT+TGG 0.312140 8.1:+1773103 None:intergenic
TGTTTGGTTTCGTGAGGATT+TGG 0.325697 8.1:-1774019 MS.gene012651:CDS
CGTCTTCGTCTTCTCCAAAA+TGG 0.334576 8.1:-1774431 MS.gene012651:CDS
TAATGATCACTGGGCAAAAC+AGG 0.337034 8.1:+1772603 None:intergenic
ACCTGAAAACAGATAAAATC+AGG 0.375798 8.1:+1773946 None:intergenic
TACGATTGCCTGTCAACATT+TGG 0.378788 8.1:+1772772 None:intergenic
GAAGAGTGTGCATGATTTGC+AGG 0.387844 8.1:+1774407 None:intergenic
AGTAGCCAAGGAATCCAAAA+AGG 0.402774 8.1:-1774205 MS.gene012651:CDS
ATTTACCAGCATACAATAGT+AGG 0.405645 8.1:+1773549 None:intergenic
TATGTCCAACCAGCTTCATT+TGG 0.412262 8.1:+1772810 None:intergenic
TGGTTTCGCAAAATGTTCAT+AGG 0.413386 8.1:+1774098 None:intergenic
TATGAACTGGGATGACAAAA+AGG 0.414590 8.1:-1772886 MS.gene012651:CDS
ATAAGCAATATTGACATGAT+TGG 0.417745 8.1:-1772699 MS.gene012651:CDS
CACTAGAGAGGGTTGATTCT+GGG 0.428324 8.1:-1774077 MS.gene012651:CDS
TTGTCCGGCCCCTCCAAAAT+GGG 0.431518 8.1:-1772997 MS.gene012651:CDS
TCATTTAGCAACTCTATAAT+GGG 0.436917 8.1:-1773098 MS.gene012651:CDS
TAAGCAATATTGACATGATT+GGG 0.440110 8.1:-1772698 MS.gene012651:CDS
CCGGTTGAACAGAATCTTCA+AGG 0.440963 8.1:+1774229 None:intergenic
CCTTGAAGATTCTGTTCAAC+CGG 0.441964 8.1:-1774229 MS.gene012651:CDS
AACAAAGAGAAGAAAGTAAG+AGG 0.444004 8.1:-1772648 MS.gene012651:CDS
ATCGATGATGATTCTTCCGT+TGG 0.444069 8.1:-1774300 MS.gene012651:CDS
TTGGATTCCTTGGCTACTAC+CGG 0.444756 8.1:+1774210 None:intergenic
CAGCAAGGAACGGGTGGAGC+AGG 0.457345 8.1:-1772964 MS.gene012651:CDS
GATATCGTTGAAGCTGGAAA+TGG 0.464894 8.1:+1774329 None:intergenic
AGAAGAGGGGTGTGGAGGTG+AGG 0.465331 8.1:+1774470 None:intergenic
AAGACGGGTGGCTTGATGCT+TGG 0.467239 8.1:-1772845 MS.gene012651:CDS
AATGGAAAGAACGGTGTTAC+GGG 0.468166 8.1:+1774347 None:intergenic
AGAACTTTGCATTGCTGAAG+TGG 0.472526 8.1:-1773072 MS.gene012651:CDS
GAGAAGAGGATGAAAGCTAT+TGG 0.477567 8.1:-1773991 MS.gene012651:CDS
TCAGATGTTCAGCAAGGAAC+GGG 0.477713 8.1:-1772973 MS.gene012651:CDS
AAATGGAAAGAACGGTGTTA+CGG 0.481769 8.1:+1774346 None:intergenic
GCAGAAGAAGAAGAGGGGTG+TGG 0.485783 8.1:+1774462 None:intergenic
GTCAATATCCTTTACAAGAC+GGG 0.488031 8.1:-1772860 MS.gene012651:CDS
GTTTCGTGAGGATTTGGAGT+TGG 0.489308 8.1:-1774013 MS.gene012651:CDS
AAGAGGCGAGATCAAACAAC+TGG 0.492477 8.1:-1772631 MS.gene012651:CDS
TTCAATCATCTCCAATGTCT+TGG 0.494355 8.1:-1774557 None:intergenic
AGGCTCTGAACATCCTCAAA+AGG 0.495956 8.1:-1772935 MS.gene012651:CDS
GTCGTTGATATCGTTGAAGC+TGG 0.496356 8.1:+1774323 None:intergenic
AGAGTTGCTAAATGATTTGG+TGG 0.498698 8.1:+1773106 None:intergenic
TACCGCAGAGGTGGCAAGTA+GGG 0.499776 8.1:+1774370 None:intergenic
TAAAAGCCAAGGATTCCAAA+AGG 0.500787 8.1:-1774140 MS.gene012651:CDS
AAGGAGACCATAATGATCAC+TGG 0.506006 8.1:+1772593 None:intergenic
CATTCAGATATTTGAGAAGG+TGG 0.508281 8.1:+1774507 None:intergenic
TTATCTCGAAATCACGTAAA+CGG 0.510151 8.1:+1772718 None:intergenic
AGGATTTGGAGTTGGAGAAG+AGG 0.513052 8.1:-1774005 MS.gene012651:CDS
GAAGAAGAAGAGGGGTGTGG+AGG 0.513948 8.1:+1774465 None:intergenic
CATTGCTGAAGTGGAGGATG+TGG 0.520787 8.1:-1773063 MS.gene012651:CDS
TGATCAACCATTAAAAGCCA+AGG 0.522361 8.1:-1774151 MS.gene012651:CDS
ACTTGCTAGAAAGTGTCAAA+AGG 0.527755 8.1:+1772574 None:intergenic
TCAAGCCACCCGTCTTGTAA+AGG 0.536203 8.1:+1772852 None:intergenic
ACGGGTGGAGCAGGCTAATG+AGG 0.537306 8.1:-1772955 MS.gene012651:CDS
TGTCAACATTTGGTTTGACT+TGG 0.538956 8.1:+1772782 None:intergenic
AAAAGCCAAGGATTCCAAAA+GGG 0.544672 8.1:-1774139 MS.gene012651:CDS
AGAAGTAGCAGAAGAAGAAG+AGG 0.546857 8.1:+1774455 None:intergenic
AAAAGCCTACTATTGTATGC+TGG 0.550331 8.1:-1773554 MS.gene012651:intron
AAGTCAAACCAAATGTTGAC+AGG 0.552513 8.1:-1772780 MS.gene012651:CDS
GTACTAAGACCAAATGAAGC+TGG 0.556624 8.1:-1772819 MS.gene012651:CDS
ATCAGATGTTCAGCAAGGAA+CGG 0.564097 8.1:-1772974 MS.gene012651:CDS
AGGCCAGAAAACAGAACCAA+CGG 0.565090 8.1:+1774284 None:intergenic
CCAGAATCAACCCTCTCTAG+TGG 0.566252 8.1:+1774078 None:intergenic
GAGAGGGTTGATTCTGGGAA+AGG 0.569735 8.1:-1774072 MS.gene012651:CDS
TCGCATTCAGATATTTGAGA+AGG 0.574572 8.1:+1774504 None:intergenic
CCATCTTGAGAGTCCTTGTC+CGG 0.575865 8.1:-1773012 MS.gene012651:CDS
CCTGAAAACAGATAAAATCA+GGG 0.584071 8.1:+1773947 None:intergenic
TTACAATGTTTGGTTTCGTG+AGG 0.584583 8.1:-1774025 MS.gene012651:CDS
GGCCTCTTCGATCGTGCAAG+AGG 0.587087 8.1:-1774266 MS.gene012651:CDS
GAAGTAGCAGAAGAAGAAGA+GGG 0.593335 8.1:+1774456 None:intergenic
CAATATTGACATGATTGGGA+TGG 0.597431 8.1:-1772694 MS.gene012651:CDS
CCGGACAAGGACTCTCAAGA+TGG 0.597814 8.1:+1773012 None:intergenic
GTACCGCAGAGGTGGCAAGT+AGG 0.598105 8.1:+1774369 None:intergenic
TGTTCAACCGGTAGTAGCCA+AGG 0.605044 8.1:-1774217 MS.gene012651:CDS
TAAGACCAAATGAAGCTGGT+TGG 0.607408 8.1:-1772815 MS.gene012651:CDS
AAGTAGCAGAAGAAGAAGAG+GGG 0.612744 8.1:+1774457 None:intergenic
GATGTTCAGCAAGGAACGGG+TGG 0.615438 8.1:-1772970 MS.gene012651:CDS
GGGCGGCAAGTCGTTTGTTG+TGG 0.616815 8.1:-1773042 MS.gene012651:CDS
AGGAGACCATAATGATCACT+GGG 0.618098 8.1:+1772594 None:intergenic
TTCCTCTTGCACGATCGAAG+AGG 0.618164 8.1:+1774264 None:intergenic
GGTCAATATCCTTTACAAGA+CGG 0.623069 8.1:-1772861 MS.gene012651:CDS
GAAGCTGGAAATGGAAAGAA+CGG 0.626576 8.1:+1774338 None:intergenic
CGGTTGAACAGAATCTTCAA+GGG 0.636842 8.1:+1774230 None:intergenic
AATGATCACTGGGCAAAACA+GGG 0.638417 8.1:+1772604 None:intergenic
TTGGTGGAGAAAGATTTCAC+TGG 0.638514 8.1:+1773122 None:intergenic
TGTTACGGGTACCGCAGAGG+TGG 0.642287 8.1:+1774361 None:intergenic
AGGACTCTCAAGATGGCTAG+TGG 0.647661 8.1:+1773019 None:intergenic
AATATCCTTTACAAGACGGG+TGG 0.648584 8.1:-1772857 MS.gene012651:CDS
AACCCTACTTGCCACCTCTG+CGG 0.653604 8.1:-1774372 MS.gene012651:CDS
TCTTTGTTGTATGAAACACC+AGG 0.659730 8.1:+1772663 None:intergenic
CTGAAAACAGATAAAATCAG+GGG 0.668394 8.1:+1773948 None:intergenic
ATTGCTGAAGTGGAGGATGT+GGG 0.669653 8.1:-1773062 MS.gene012651:CDS
ACTTTGCATTGCTGAAGTGG+AGG 0.670157 8.1:-1773069 MS.gene012651:CDS
ATGGGATCAGATGTTCAGCA+AGG 0.672446 8.1:-1772979 MS.gene012651:CDS
CGGTGTTACGGGTACCGCAG+AGG 0.672506 8.1:+1774358 None:intergenic
ATTGGGATGGATGAATTACC+TGG 0.700985 8.1:-1772681 MS.gene012651:CDS
GCTGAAGTGGAGGATGTGGG+CGG 0.736984 8.1:-1773059 MS.gene012651:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAAATGCAAAAAAAA+AGG + chr8.1:1773414-1773433 None:intergenic 10.0%
!!! TCAATTTTCTAAATAATTAC+CGG - chr8.1:1773314-1773333 MS.gene012651:intron 15.0%
!! ACATTACAGAATGATAAAAA+AGG + chr8.1:1773599-1773618 None:intergenic 20.0%
!!! ATTTTTTAGACCGTTTTATT+TGG - chr8.1:1773907-1773926 MS.gene012651:intron 20.0%
!!! TCATAGTTTTTGTATATGAT+TGG - chr8.1:1773709-1773728 MS.gene012651:intron 20.0%
!!! TTTTGCATTTTATATTTGTG+TGG - chr8.1:1773418-1773437 MS.gene012651:intron 20.0%
!!! TTTTTTAGACCGTTTTATTT+GGG - chr8.1:1773908-1773927 MS.gene012651:intron 20.0%
! AAAAATACTTCAAGCAAAAC+AGG + chr8.1:1773893-1773912 None:intergenic 25.0%
! ATAAGCAATATTGACATGAT+TGG - chr8.1:1774416-1774435 MS.gene012651:CDS 25.0%
! ATCATTTAGCAACTCTATAA+TGG - chr8.1:1774016-1774035 MS.gene012651:CDS 25.0%
! ATTGTTGTCAATTGTAAAAC+TGG + chr8.1:1773667-1773686 None:intergenic 25.0%
! CATAGATATTAGCATAACAT+TGG + chr8.1:1773836-1773855 None:intergenic 25.0%
! TAAGCAATATTGACATGATT+GGG - chr8.1:1774417-1774436 MS.gene012651:CDS 25.0%
! TATAGAGTTGCTAAATGATT+TGG + chr8.1:1774015-1774034 None:intergenic 25.0%
! TCATTTAGCAACTCTATAAT+GGG - chr8.1:1774017-1774036 MS.gene012651:CDS 25.0%
!! AAAAATATCAATAGCCCTTT+TGG + chr8.1:1772993-1773012 None:intergenic 25.0%
!!! ACTTTTTCTATCAGAAATGT+CGG + chr8.1:1773234-1773253 None:intergenic 25.0%
!!! AGATTTTGAGTTACAATGTT+TGG - chr8.1:1773080-1773099 MS.gene012651:CDS 25.0%
AACAAAGAGAAGAAAGTAAG+AGG - chr8.1:1774467-1774486 MS.gene012651:CDS 30.0%
ACCTGAAAACAGATAAAATC+AGG + chr8.1:1773172-1773191 None:intergenic 30.0%
ATTTACCAGCATACAATAGT+AGG + chr8.1:1773569-1773588 None:intergenic 30.0%
CCTGAAAACAGATAAAATCA+GGG + chr8.1:1773171-1773190 None:intergenic 30.0%
CTGAAAACAGATAAAATCAG+GGG + chr8.1:1773170-1773189 None:intergenic 30.0%
TTATCTCGAAATCACGTAAA+CGG + chr8.1:1774400-1774419 None:intergenic 30.0%
! AACGAAATCAATAGCCTTTT+TGG + chr8.1:1772927-1772946 None:intergenic 30.0%
! TAAAACGATCTAATCGCTTT+TGG + chr8.1:1774373-1774392 None:intergenic 30.0%
! TCTGTCATTTCATATGTGAT+TGG - chr8.1:1773736-1773755 MS.gene012651:intron 30.0%
AAAAGCCAAGGATTCCAAAA+GGG - chr8.1:1772976-1772995 MS.gene012651:CDS 35.0%
AAAAGCCTACTATTGTATGC+TGG - chr8.1:1773561-1773580 MS.gene012651:CDS 35.0%
AAGTCAAACCAAATGTTGAC+AGG - chr8.1:1774335-1774354 MS.gene012651:CDS 35.0%
ACCCTCTTTCCCAAATAAAA+CGG + chr8.1:1773920-1773939 None:intergenic 35.0%
CAATATTGACATGATTGGGA+TGG - chr8.1:1774421-1774440 MS.gene012651:CDS 35.0%
CATTCAGATATTTGAGAAGG+TGG + chr8.1:1772611-1772630 None:intergenic 35.0%
GATCACTGTGACAGTATTAT+GGG - chr8.1:1773855-1773874 MS.gene012651:intron 35.0%
GGTCAATATCCTTTACAAGA+CGG - chr8.1:1774254-1774273 MS.gene012651:CDS 35.0%
GTCAATATCCTTTACAAGAC+GGG - chr8.1:1774255-1774274 MS.gene012651:CDS 35.0%
GTTGCACATATGACTATATC+AGG + chr8.1:1773628-1773647 None:intergenic 35.0%
TAAAAGCCAAGGATTCCAAA+AGG - chr8.1:1772975-1772994 MS.gene012651:CDS 35.0%
TATGAACTGGGATGACAAAA+AGG - chr8.1:1774229-1774248 MS.gene012651:CDS 35.0%
TCGCATTCAGATATTTGAGA+AGG + chr8.1:1772614-1772633 None:intergenic 35.0%
TGATCAACCATTAAAAGCCA+AGG - chr8.1:1772964-1772983 MS.gene012651:CDS 35.0%
TGATCACTGTGACAGTATTA+TGG - chr8.1:1773854-1773873 MS.gene012651:intron 35.0%
TGGTTTCGCAAAATGTTCAT+AGG + chr8.1:1773020-1773039 None:intergenic 35.0%
! AAATGGAAAGAACGGTGTTA+CGG + chr8.1:1772772-1772791 None:intergenic 35.0%
! AATAGCCTTTTTGGATTCCT+TGG + chr8.1:1772918-1772937 None:intergenic 35.0%
! AGAGTTGCTAAATGATTTGG+TGG + chr8.1:1774012-1774031 None:intergenic 35.0%
! ATTTTGTTCACCTGTATCAC+AGG - chr8.1:1773450-1773469 MS.gene012651:intron 35.0%
! CCCTGATTTTATCTGTTTTC+AGG - chr8.1:1773168-1773187 MS.gene012651:intron 35.0%
! TCTTTGTTGTATGAAACACC+AGG + chr8.1:1774455-1774474 None:intergenic 35.0%
! TTACAATGTTTGGTTTCGTG+AGG - chr8.1:1773090-1773109 MS.gene012651:CDS 35.0%
!! ACATTTTCAAGCGATCTACA+TGG - chr8.1:1773494-1773513 MS.gene012651:intron 35.0%
!! ACTTGCTAGAAAGTGTCAAA+AGG + chr8.1:1774544-1774563 None:intergenic 35.0%
!! TGTCAACATTTGGTTTGACT+TGG + chr8.1:1774336-1774355 None:intergenic 35.0%
!! TTGGAATCCTTGGCTTTTAA+TGG + chr8.1:1772974-1772993 None:intergenic 35.0%
!!! ACCGTTTTATTTGGGAAAGA+GGG - chr8.1:1773916-1773935 MS.gene012651:intron 35.0%
AACTGGGATGACAAAAAGGA+TGG - chr8.1:1774233-1774252 MS.gene012651:CDS 40.0%
AAGGAGACCATAATGATCAC+TGG + chr8.1:1774525-1774544 None:intergenic 40.0%
AAGTAGCAGAAGAAGAAGAG+GGG + chr8.1:1772661-1772680 None:intergenic 40.0%
AATATCCTTTACAAGACGGG+TGG - chr8.1:1774258-1774277 MS.gene012651:CDS 40.0%
AATGATCACTGGGCAAAACA+GGG + chr8.1:1774514-1774533 None:intergenic 40.0%
AATTACCGGTATCTACGTGA+CGG - chr8.1:1773328-1773347 MS.gene012651:intron 40.0%
AGAACTTTGCATTGCTGAAG+TGG - chr8.1:1774043-1774062 MS.gene012651:CDS 40.0%
AGAAGTAGCAGAAGAAGAAG+AGG + chr8.1:1772663-1772682 None:intergenic 40.0%
AGGAGACCATAATGATCACT+GGG + chr8.1:1774524-1774543 None:intergenic 40.0%
AGTAGCCAAGGAATCCAAAA+AGG - chr8.1:1772910-1772929 MS.gene012651:CDS 40.0%
ATCAGATGTTCAGCAAGGAA+CGG - chr8.1:1774141-1774160 MS.gene012651:CDS 40.0%
ATCGATGATGATTCTTCCGT+TGG - chr8.1:1772815-1772834 MS.gene012651:CDS 40.0%
ATTGGGATGGATGAATTACC+TGG - chr8.1:1774434-1774453 MS.gene012651:CDS 40.0%
CACCCCCAAAAACAACATTA+GGG + chr8.1:1774208-1774227 None:intergenic 40.0%
CCTTGAAGATTCTGTTCAAC+CGG - chr8.1:1772886-1772905 MS.gene012651:CDS 40.0%
CGGTTGAACAGAATCTTCAA+GGG + chr8.1:1772888-1772907 None:intergenic 40.0%
GAAGCTGGAAATGGAAAGAA+CGG + chr8.1:1772780-1772799 None:intergenic 40.0%
GAAGTAGCAGAAGAAGAAGA+GGG + chr8.1:1772662-1772681 None:intergenic 40.0%
GAGAAGAGGATGAAAGCTAT+TGG - chr8.1:1773124-1773143 MS.gene012651:CDS 40.0%
GATATCGTTGAAGCTGGAAA+TGG + chr8.1:1772789-1772808 None:intergenic 40.0%
GGTAAGTGTTAGTATGTGTC+TGG - chr8.1:1773349-1773368 MS.gene012651:intron 40.0%
GTACTAAGACCAAATGAAGC+TGG - chr8.1:1774296-1774315 MS.gene012651:CDS 40.0%
TAAGACCAAATGAAGCTGGT+TGG - chr8.1:1774300-1774319 MS.gene012651:CDS 40.0%
TAATGATCACTGGGCAAAAC+AGG + chr8.1:1774515-1774534 None:intergenic 40.0%
TACGATTGCCTGTCAACATT+TGG + chr8.1:1774346-1774365 None:intergenic 40.0%
TATGTCCAACCAGCTTCATT+TGG + chr8.1:1774308-1774327 None:intergenic 40.0%
TCACCCCCAAAAACAACATT+AGG + chr8.1:1774209-1774228 None:intergenic 40.0%
TTGGTGGAGAAAGATTTCAC+TGG + chr8.1:1773996-1774015 None:intergenic 40.0%
! AACATCTGATCCCATTTTGG+AGG + chr8.1:1774131-1774150 None:intergenic 40.0%
! ACATCTGATCCCATTTTGGA+GGG + chr8.1:1774130-1774149 None:intergenic 40.0%
! ATTTTGCGAAACCACTAGAG+AGG - chr8.1:1773026-1773045 MS.gene012651:CDS 40.0%
! CTGAACATCTGATCCCATTT+TGG + chr8.1:1774134-1774153 None:intergenic 40.0%
! GTTTTGCCCAGTGATCATTA+TGG - chr8.1:1774515-1774534 MS.gene012651:CDS 40.0%
! TGTTTGGTTTCGTGAGGATT+TGG - chr8.1:1773096-1773115 MS.gene012651:CDS 40.0%
! TTTTGCGAAACCACTAGAGA+GGG - chr8.1:1773027-1773046 MS.gene012651:CDS 40.0%
!! AATGGAAAGAACGGTGTTAC+GGG + chr8.1:1772771-1772790 None:intergenic 40.0%
!! CATGATTTGCAGGACCATTT+TGG + chr8.1:1772701-1772720 None:intergenic 40.0%
!! TTTTCAAGCGATCTACATGG+TGG - chr8.1:1773497-1773516 MS.gene012651:intron 40.0%
!! TTTTGGGGGTGATATGAACT+GGG - chr8.1:1774217-1774236 MS.gene012651:CDS 40.0%
!! TTTTTGGGGGTGATATGAAC+TGG - chr8.1:1774216-1774235 MS.gene012651:CDS 40.0%
!!! AATAGCCCTTTTGGAATCCT+TGG + chr8.1:1772984-1773003 None:intergenic 40.0%
!!! AGGCACCCTAATGTTGTTTT+TGG - chr8.1:1774200-1774219 MS.gene012651:CDS 40.0%
!!! CACCCTAATGTTGTTTTTGG+GGG - chr8.1:1774203-1774222 MS.gene012651:CDS 40.0%
!!! GACCGTTTTATTTGGGAAAG+AGG - chr8.1:1773915-1773934 MS.gene012651:intron 40.0%
!!! GCACCCTAATGTTGTTTTTG+GGG - chr8.1:1774202-1774221 MS.gene012651:CDS 40.0%
!!! GGCACCCTAATGTTGTTTTT+GGG - chr8.1:1774201-1774220 MS.gene012651:CDS 40.0%
AAGAGGCGAGATCAAACAAC+TGG - chr8.1:1774484-1774503 MS.gene012651:CDS 45.0%
ACTTACCGTCACGTAGATAC+CGG + chr8.1:1773336-1773355 None:intergenic 45.0%
ACTTTGCATTGCTGAAGTGG+AGG - chr8.1:1774046-1774065 MS.gene012651:CDS 45.0%
AGGCCAGAAAACAGAACCAA+CGG + chr8.1:1772834-1772853 None:intergenic 45.0%
ATGGGATCAGATGTTCAGCA+AGG - chr8.1:1774136-1774155 MS.gene012651:CDS 45.0%
ATTGCTGAAGTGGAGGATGT+GGG - chr8.1:1774053-1774072 MS.gene012651:CDS 45.0%
CCGGTTGAACAGAATCTTCA+AGG + chr8.1:1772889-1772908 None:intergenic 45.0%
CGTCTTCGTCTTCTCCAAAA+TGG - chr8.1:1772684-1772703 MS.gene012651:CDS 45.0%
CTAGTAACCTCCTGTGATAC+AGG + chr8.1:1773463-1773482 None:intergenic 45.0%
GTCGTTGATATCGTTGAAGC+TGG + chr8.1:1772795-1772814 None:intergenic 45.0%
TCAGATGTTCAGCAAGGAAC+GGG - chr8.1:1774142-1774161 MS.gene012651:CDS 45.0%
TTGGATTCCTTGGCTACTAC+CGG + chr8.1:1772908-1772927 None:intergenic 45.0%
TTGTTCACCTGTATCACAGG+AGG - chr8.1:1773453-1773472 MS.gene012651:intron 45.0%
! AGGATTTGGAGTTGGAGAAG+AGG - chr8.1:1773110-1773129 MS.gene012651:CDS 45.0%
! CACTAGAGAGGGTTGATTCT+GGG - chr8.1:1773038-1773057 MS.gene012651:CDS 45.0%
! GAAGAGTGTGCATGATTTGC+AGG + chr8.1:1772711-1772730 None:intergenic 45.0%
! GTTTCGTGAGGATTTGGAGT+TGG - chr8.1:1773102-1773121 MS.gene012651:CDS 45.0%
!! AGGCTCTGAACATCCTCAAA+AGG - chr8.1:1774180-1774199 MS.gene012651:CDS 45.0%
!! ATCAAGCACTGACGCAGAAT+CGG + chr8.1:1773378-1773397 None:intergenic 45.0%
!! CAACATTAGGGTGCCTTTTG+AGG + chr8.1:1774196-1774215 None:intergenic 45.0%
!! CATCTGATCCCATTTTGGAG+GGG + chr8.1:1774129-1774148 None:intergenic 45.0%
!!! CTTCCGTTGGTTCTGTTTTC+TGG - chr8.1:1772828-1772847 MS.gene012651:CDS 45.0%
AGGACTCTCAAGATGGCTAG+TGG + chr8.1:1774099-1774118 None:intergenic 50.0%
CATTGCTGAAGTGGAGGATG+TGG - chr8.1:1774052-1774071 MS.gene012651:CDS 50.0%
CCAGAATCAACCCTCTCTAG+TGG + chr8.1:1773040-1773059 None:intergenic 50.0%
CCATCTTGAGAGTCCTTGTC+CGG - chr8.1:1774103-1774122 MS.gene012651:CDS 50.0%
GTACGACACTAACACGACAC+TGG - chr8.1:1773267-1773286 MS.gene012651:intron 50.0%
TCAAGCCACCCGTCTTGTAA+AGG + chr8.1:1774266-1774285 None:intergenic 50.0%
TGTTCAACCGGTAGTAGCCA+AGG - chr8.1:1772898-1772917 MS.gene012651:CDS 50.0%
TTCCTCTTGCACGATCGAAG+AGG + chr8.1:1772854-1772873 None:intergenic 50.0%
! CCACTAGAGAGGGTTGATTC+TGG - chr8.1:1773037-1773056 MS.gene012651:CDS 50.0%
! GAGAGGGTTGATTCTGGGAA+AGG - chr8.1:1773043-1773062 MS.gene012651:CDS 50.0%
AACCCTACTTGCCACCTCTG+CGG - chr8.1:1772743-1772762 MS.gene012651:CDS 55.0%
AAGACGGGTGGCTTGATGCT+TGG - chr8.1:1774270-1774289 MS.gene012651:CDS 55.0%
CCGGACAAGGACTCTCAAGA+TGG + chr8.1:1774106-1774125 None:intergenic 55.0%
GATGTTCAGCAAGGAACGGG+TGG - chr8.1:1774145-1774164 MS.gene012651:CDS 55.0%
GCAGAAGAAGAAGAGGGGTG+TGG + chr8.1:1772656-1772675 None:intergenic 55.0%
TACCGCAGAGGTGGCAAGTA+GGG + chr8.1:1772748-1772767 None:intergenic 55.0%
TTGTCCGGCCCCTCCAAAAT+GGG - chr8.1:1774118-1774137 MS.gene012651:CDS 55.0%
! GAAGAAGAAGAGGGGTGTGG+AGG + chr8.1:1772653-1772672 None:intergenic 55.0%
!! TGATCCCATTTTGGAGGGGC+CGG + chr8.1:1774125-1774144 None:intergenic 55.0%
ACGGGTGGAGCAGGCTAATG+AGG - chr8.1:1774160-1774179 MS.gene012651:CDS 60.0%
CTTGTCCGGCCCCTCCAAAA+TGG - chr8.1:1774117-1774136 MS.gene012651:CDS 60.0%
GCTGAAGTGGAGGATGTGGG+CGG - chr8.1:1774056-1774075 MS.gene012651:CDS 60.0%
GGCCTCTTCGATCGTGCAAG+AGG - chr8.1:1772849-1772868 MS.gene012651:CDS 60.0%
GTACCGCAGAGGTGGCAAGT+AGG + chr8.1:1772749-1772768 None:intergenic 60.0%
! AGAAGAGGGGTGTGGAGGTG+AGG + chr8.1:1772648-1772667 None:intergenic 60.0%
! GGGCGGCAAGTCGTTTGTTG+TGG - chr8.1:1774073-1774092 MS.gene012651:CDS 60.0%
! TGTTACGGGTACCGCAGAGG+TGG + chr8.1:1772757-1772776 None:intergenic 60.0%
!! CATTTTGGAGGGGCCGGACA+AGG + chr8.1:1774119-1774138 None:intergenic 60.0%
CAGCAAGGAACGGGTGGAGC+AGG - chr8.1:1774151-1774170 MS.gene012651:CDS 65.0%
!! CGGTGTTACGGGTACCGCAG+AGG + chr8.1:1772760-1772779 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 1772572 1774565 1772572 ID=MS.gene012651
chr8.1 mRNA 1772572 1774565 1772572 ID=MS.gene012651.t1;Parent=MS.gene012651
chr8.1 exon 1773948 1774565 1773948 ID=MS.gene012651.t1.exon1;Parent=MS.gene012651.t1
chr8.1 CDS 1773948 1774565 1773948 ID=cds.MS.gene012651.t1;Parent=MS.gene012651.t1
chr8.1 exon 1773555 1773665 1773555 ID=MS.gene012651.t1.exon2;Parent=MS.gene012651.t1
chr8.1 CDS 1773555 1773665 1773555 ID=cds.MS.gene012651.t1;Parent=MS.gene012651.t1
chr8.1 exon 1772572 1773156 1772572 ID=MS.gene012651.t1.exon3;Parent=MS.gene012651.t1
chr8.1 CDS 1772572 1773156 1772572 ID=cds.MS.gene012651.t1;Parent=MS.gene012651.t1
Gene Sequence

>MS.gene012651

ATGTCTTGGTCATGCAAAAAATGTACTTTCGTCAATCCACCTTCTCAAATATCTGAATGCGAAATTTGTTTCTCCTCACCTCCACACCCCTCTTCTTCTTCTGCTACTTCTTCGTCTTCGTCTTCTCCAAAATGGTCCTGCAAATCATGCACACTCTTCAACTCTTACAAAAACCCTACTTGCCACCTCTGCGGTACCCGTAACACCGTTCTTTCCATTTCCAGCTTCAACGATATCAACGACATCGATGATGATTCTTCCGTTGGTTCTGTTTTCTGGCCTCTTCGATCGTGCAAGAGGAAAGCTGTAGATTCCCTTGAAGATTCTGTTCAACCGGTAGTAGCCAAGGAATCCAAAAAGGCTATTGATTTCGTTGATTTCTCTGAAGATTTTGATCAACCATTAAAAGCCAAGGATTCCAAAAGGGCTATTGATATTTTTGATTCCTATGAACATTTTGCGAAACCACTAGAGAGGGTTGATTCTGGGAAAGGTGTTAGTTCGTTGAAGATTTTGAGTTACAATGTTTGGTTTCGTGAGGATTTGGAGTTGGAGAAGAGGATGAAAGCTATTGGTGATCTTGTTTTGTTGCATTCCCCTGATTTTATCTGTTTTCAGGTTTCATTATATCACATATTATATTTACTATCTTTGCAGCACCGACATTTCTGATAGAAAAAGTGTACAATGTCAATGTACGACACTAACACGACACTGGCACATGTGATTACATTTAATTATGTCAATTTTCTAAATAATTACCGGTATCTACGTGACGGTAAGTGTTAGTATGTGTCTGGTGTCCGATTCTGCGTCAGTGCTTGATAGTTTACAATACACCTTTTTTTTTGCATTTTATATTTGTGTGGCTTTGTTTGATTTTGTTCACCTGTATCACAGGAGGTTACTAGCGATATATATGACATTTTCAAGCGATCTACATGGTGGAATGTATATCATTGTTCAGTTTCTTCTGAGAAAGCTTATTCAAAAGCCTACTATTGTATGCTGGTAAATTTCACAGCCTTTTTTATCATTCTGTAATGTAATCTGCCTGATATAGTCATATGTGCAACAATCTTTCTTTATAATCCAGTTTTACAATTGACAACAATGACGCATTTGTTTTGATTATTATCATAGTTTTTGTATATGATTGGTACATCTGTCATTTCATATGTGATTGGTACATCTGTTATATTGTCTGCTAGCATGAAATCTGTTCAGAAGAGCATCAAGCTTCGTGCTAAATAACTGTATGCCAATGTTATGCTAATATCTATGATCACTGTGACAGTATTATGGGTAAAAAGCTCATCCTGTTTTGCTTGAAGTATTTTTTAGACCGTTTTATTTGGGAAAGAGGGTGTTATTCTTATGTACTGAAATATCTGTCAAATTAATTTCAGTTAAGCAAACTGCCAGTGAAATCTTTCTCCACCAAATCATTTAGCAACTCTATAATGGGAAGAGAACTTTGCATTGCTGAAGTGGAGGATGTGGGCGGCAAGTCGTTTGTTGTGGCCACTAGCCATCTTGAGAGTCCTTGTCCGGCCCCTCCAAAATGGGATCAGATGTTCAGCAAGGAACGGGTGGAGCAGGCTAATGAGGCTCTGAACATCCTCAAAAGGCACCCTAATGTTGTTTTTGGGGGTGATATGAACTGGGATGACAAAAAGGATGGTCAATATCCTTTACAAGACGGGTGGCTTGATGCTTGGTCTGTACTAAGACCAAATGAAGCTGGTTGGACATATGATACCAAGTCAAACCAAATGTTGACAGGCAATCGTACTCTCCAAAAGCGATTAGATCGTTTTATTTGCCGTTTACGTGATTTCGAGATAAGCAATATTGACATGATTGGGATGGATGAATTACCTGGTGTTTCATACAACAAAGAGAAGAAAGTAAGAGGCGAGATCAAACAACTGGTATGCCCTGTTTTGCCCAGTGATCATTATGGTCTCCTTTTGACACTTTCTAGCAAGTAG
Protein sequence

>MS.gene012651.t1

MSWSCKKCTFVNPPSQISECEICFSSPPHPSSSSATSSSSSSPKWSCKSCTLFNSYKNPTCHLCGTRNTVLSISSFNDINDIDDDSSVGSVFWPLRSCKRKAVDSLEDSVQPVVAKESKKAIDFVDFSEDFDQPLKAKDSKRAIDIFDSYEHFAKPLERVDSGKGVSSLKILSYNVWFREDLELEKRMKAIGDLVLLHSPDFICFQEVTSDIYDIFKRSTWWNVYHCSVSSEKAYSKAYYCMLLSKLPVKSFSTKSFSNSIMGRELCIAEVEDVGGKSFVVATSHLESPCPAPPKWDQMFSKERVEQANEALNILKRHPNVVFGGDMNWDDKKDGQYPLQDGWLDAWSVLRPNEAGWTYDTKSNQMLTGNRTLQKRLDRFICRLRDFEISNIDMIGMDELPGVSYNKEKKVRGEIKQLVCPVLPSDHYGLLLTLSSK