AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017324


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017324.t1 MTR_5g067400 64.192 229 81 1 12 240 83 310 4.14e-99 292
MS.gene017324.t1 MTR_5g076810 62.821 234 85 2 12 244 36 268 9.17e-99 289
MS.gene017324.t1 MTR_5g076660 65.517 232 76 2 12 240 105 335 1.34e-98 291
MS.gene017324.t1 MTR_1g046640 62.771 231 84 2 9 239 80 308 2.03e-97 288
MS.gene017324.t1 MTR_7g024290 61.739 230 86 2 12 240 83 311 2.24e-93 277
MS.gene017324.t1 MTR_5g076370 62.069 232 84 2 12 240 106 336 9.88e-93 276
MS.gene017324.t1 MTR_1g046650 61.404 228 86 2 12 239 14 239 2.36e-92 272
MS.gene017324.t1 MTR_1g046650 61.404 228 86 2 12 239 83 308 2.33e-91 272
MS.gene017324.t1 MTR_1g046650 61.404 228 86 2 12 239 83 308 4.15e-91 271
MS.gene017324.t1 MTR_1g046650 61.404 228 86 2 12 239 114 339 1.16e-90 271
MS.gene017324.t1 MTR_7g094390 57.021 235 96 2 12 242 244 477 1.02e-84 261
MS.gene017324.t1 MTR_5g061290 56.596 235 94 4 12 240 89 321 3.24e-83 252
MS.gene017324.t1 MTR_2g038420 58.974 234 90 3 12 240 97 329 1.63e-82 250
MS.gene017324.t1 MTR_2g038430 55.649 239 92 3 12 237 97 334 5.01e-82 249
MS.gene017324.t1 MTR_5g076520 56.897 232 95 3 12 239 83 313 7.35e-80 243
MS.gene017324.t1 MTR_5g076505 52.155 232 107 2 12 240 79 309 1.09e-74 230
MS.gene017324.t1 MTR_5g076720 52.609 230 105 2 14 240 156 384 3.31e-72 226
MS.gene017324.t1 MTR_5g076820 62.176 193 66 4 12 199 90 280 3.66e-72 223
MS.gene017324.t1 MTR_5g077020 57.386 176 63 5 1 169 38 208 5.14e-55 176
MS.gene017324.t1 MTR_5g076540 60.526 152 59 1 12 163 83 233 1.75e-54 176
MS.gene017324.t1 MTR_4g058025 63.866 119 41 2 12 129 16 133 1.73e-44 148
MS.gene017324.t1 MTR_4g094468 42.857 154 82 3 15 165 172 322 3.71e-30 115
MS.gene017324.t1 MTR_7g105080 58.571 70 29 0 171 240 1 70 5.49e-18 77.8
MS.gene017324.t1 MTR_3g092130 58.571 70 29 0 171 240 1 70 5.49e-18 77.8
MS.gene017324.t1 MTR_1g059690 58.571 70 29 0 171 240 1 70 5.49e-18 77.8
MS.gene017324.t1 MTR_5g092700 58.571 70 29 0 171 240 1 70 7.96e-18 78.2
MS.gene017324.t1 MTR_4g073580 58.571 70 29 0 171 240 1 70 7.96e-18 78.2
MS.gene017324.t1 MTR_8g088060 58.571 70 29 0 171 240 1 70 1.64e-17 77.4
MS.gene017324.t1 MTR_5g033960 58.571 70 29 0 171 240 1 70 1.91e-17 77.4
MS.gene017324.t1 MTR_4g073580 58.571 70 29 0 171 240 1 70 1.99e-17 77.8
MS.gene017324.t1 MTR_3g092130 58.571 70 29 0 171 240 1 70 2.86e-17 76.3
MS.gene017324.t1 MTR_4g088495 60.000 70 28 0 171 240 1 70 2.99e-17 81.3
MS.gene017324.t1 MTR_4g088495 58.571 70 29 0 171 240 77 146 3.80e-16 78.2
MS.gene017324.t1 MTR_4g088495 58.571 70 29 0 171 240 153 222 3.80e-16 78.2
MS.gene017324.t1 MTR_4g088495 58.571 70 29 0 171 240 229 298 3.80e-16 78.2
MS.gene017324.t1 MTR_4g088495 58.571 70 29 0 171 240 305 374 3.80e-16 78.2
MS.gene017324.t1 MTR_4g088495 58.571 70 29 0 171 240 381 450 3.80e-16 78.2
MS.gene017324.t1 MTR_4g088495 58.571 70 29 0 171 240 457 526 3.80e-16 78.2
MS.gene017324.t1 MTR_4g088495 58.571 70 29 0 171 240 533 602 3.80e-16 78.2
MS.gene017324.t1 MTR_4g088495 58.571 70 29 0 171 240 609 678 3.80e-16 78.2
MS.gene017324.t1 MTR_4g088495 58.571 70 29 0 171 240 685 754 3.80e-16 78.2
MS.gene017324.t1 MTR_4g088495 58.571 70 29 0 171 240 761 830 3.80e-16 78.2
MS.gene017324.t1 MTR_7g116360 59.155 71 29 0 170 240 48 118 3.23e-17 79.3
MS.gene017324.t1 MTR_7g116360 53.750 80 37 0 161 240 115 194 1.14e-16 77.8
MS.gene017324.t1 MTR_7g116360 53.750 80 37 0 161 240 191 270 1.14e-16 77.8
MS.gene017324.t1 MTR_4g088485 53.750 80 37 0 161 240 128 207 4.44e-17 77.8
MS.gene017324.t1 MTR_4g088485 58.571 70 29 0 171 240 1 70 4.82e-17 77.8
MS.gene017324.t1 MTR_7g116360 58.571 70 29 0 171 240 1 70 5.83e-17 77.8
MS.gene017324.t1 MTR_7g116360 58.571 70 29 0 171 240 77 146 5.83e-17 77.8
MS.gene017324.t1 MTR_7g116360 58.571 70 29 0 171 240 153 222 5.83e-17 77.8
MS.gene017324.t1 MTR_1g066390 53.750 80 37 0 161 240 67 146 6.05e-17 77.8
MS.gene017324.t1 MTR_1g066390 53.750 80 37 0 161 240 143 222 6.05e-17 77.8
MS.gene017324.t1 MTR_1g066390 58.571 70 29 0 171 240 1 70 6.23e-17 77.8
MS.gene017324.t1 MTR_4g080920 53.750 80 37 0 161 240 67 146 6.54e-17 77.8
MS.gene017324.t1 MTR_4g080920 57.143 70 30 0 171 240 1 70 6.93e-16 74.7
MS.gene017324.t1 MTR_4g080920 46.250 80 43 0 161 240 143 222 7.67e-12 63.5
MS.gene017324.t1 MTR_8g018230 53.750 80 37 0 161 240 67 146 1.09e-16 77.8
MS.gene017324.t1 MTR_8g018230 53.750 80 37 0 161 240 143 222 1.09e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 1 70 1.18e-16 77.8
MS.gene017324.t1 MTR_6g061930 53.750 80 37 0 161 240 67 146 1.26e-16 77.8
MS.gene017324.t1 MTR_6g061930 53.750 80 37 0 161 240 204 283 1.26e-16 77.8
MS.gene017324.t1 MTR_6g061930 58.571 70 29 0 171 240 1 70 1.35e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 1 70 1.60e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 77 146 1.60e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 153 222 1.60e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 229 298 1.60e-16 77.8
MS.gene017324.t1 MTR_4g091580 58.571 70 29 0 171 240 305 374 1.70e-16 79.0
MS.gene017324.t1 MTR_4g091580 58.571 70 29 0 171 240 1 70 3.97e-16 77.8
MS.gene017324.t1 MTR_4g091580 58.571 70 29 0 171 240 77 146 3.97e-16 77.8
MS.gene017324.t1 MTR_4g091580 58.571 70 29 0 171 240 153 222 3.97e-16 77.8
MS.gene017324.t1 MTR_4g091580 58.571 70 29 0 171 240 229 298 3.97e-16 77.8
MS.gene017324.t1 MTR_4g091580 58.571 70 29 0 171 240 381 450 3.97e-16 77.8
MS.gene017324.t1 MTR_4g091580 58.571 70 29 0 171 240 457 526 3.97e-16 77.8
MS.gene017324.t1 MTR_4g091580 58.571 70 29 0 171 240 229 298 1.81e-16 78.2
MS.gene017324.t1 MTR_4g091580 58.571 70 29 0 171 240 1 70 2.49e-16 77.8
MS.gene017324.t1 MTR_4g091580 58.571 70 29 0 171 240 77 146 2.49e-16 77.8
MS.gene017324.t1 MTR_4g091580 58.571 70 29 0 171 240 153 222 2.49e-16 77.8
MS.gene017324.t1 MTR_4g091580 58.571 70 29 0 171 240 305 374 2.49e-16 77.8
MS.gene017324.t1 MTR_8g081020 58.571 70 29 0 171 240 1 70 2.42e-16 77.8
MS.gene017324.t1 MTR_8g081020 58.571 70 29 0 171 240 77 146 2.42e-16 77.8
MS.gene017324.t1 MTR_8g081020 58.571 70 29 0 171 240 153 222 2.42e-16 77.8
MS.gene017324.t1 MTR_8g081020 58.571 70 29 0 171 240 229 298 2.42e-16 77.8
MS.gene017324.t1 MTR_8g081020 58.571 70 29 0 171 240 305 374 2.42e-16 77.8
MS.gene017324.t1 MTR_4g080797 58.571 70 29 0 171 240 1 70 2.49e-16 77.8
MS.gene017324.t1 MTR_4g080797 58.571 70 29 0 171 240 77 146 2.49e-16 77.8
MS.gene017324.t1 MTR_4g080797 58.571 70 29 0 171 240 153 222 2.49e-16 77.8
MS.gene017324.t1 MTR_4g080797 58.571 70 29 0 171 240 229 298 2.49e-16 77.8
MS.gene017324.t1 MTR_4g080797 58.571 70 29 0 171 240 305 374 2.49e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 1 70 2.49e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 77 146 2.49e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 153 222 2.49e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 229 298 2.49e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 305 374 2.49e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 1 70 2.69e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 77 146 2.69e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 153 222 2.69e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 229 298 2.69e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 305 374 2.69e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 1 70 2.70e-16 76.6
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 77 146 2.70e-16 76.6
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 153 222 2.70e-16 76.6
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 1 70 3.26e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 77 146 3.26e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 153 222 3.26e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 229 298 3.26e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 305 374 3.26e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 381 450 3.26e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 1 70 3.26e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 77 146 3.26e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 153 222 3.26e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 229 298 3.26e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 305 374 3.26e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 381 450 3.26e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 1 70 3.58e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 77 146 3.58e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 153 222 3.58e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 229 298 3.58e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 305 374 3.58e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 381 450 3.58e-16 77.8
MS.gene017324.t1 MTR_8g018230 58.571 70 29 0 171 240 457 526 3.58e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 1 70 3.76e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 77 146 3.76e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 153 222 3.76e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 229 298 3.76e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 305 374 3.76e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 381 450 3.76e-16 77.8
MS.gene017324.t1 MTR_4g081010 58.571 70 29 0 171 240 457 526 3.76e-16 77.8
MS.gene017324.t1 MTR_5g061310 50.000 70 35 0 171 240 2 71 9.40e-16 70.5
MS.gene017324.t1 MTR_8g479250 55.000 80 36 0 161 240 131 210 4.82e-13 67.8
MS.gene017324.t1 MTR_7g085590 29.730 111 77 1 12 122 124 233 5.78e-12 64.7
MS.gene017324.t1 MTR_5g076740 47.761 67 34 1 170 235 85 151 1.23e-11 61.6
MS.gene017324.t1 MTR_4g009980 46.269 67 32 1 180 242 5 71 2.08e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017324.t1 AT1G65350 55.000 80 36 0 161 240 142 221 2.34e-18 83.2
MS.gene017324.t1 AT1G65350 58.571 70 29 0 171 240 1 70 2.34e-16 77.4
MS.gene017324.t1 AT1G65350 52.500 80 37 1 161 240 67 145 9.96e-14 70.1
MS.gene017324.t1 AT3G52590 58.571 70 29 0 171 240 1 70 7.31e-18 77.8
MS.gene017324.t1 AT2G36170 58.571 70 29 0 171 240 1 70 7.31e-18 77.8
MS.gene017324.t1 AT2G47110 58.571 70 29 0 171 240 1 70 1.24e-17 77.8
MS.gene017324.t1 AT2G47110 58.571 70 29 0 171 240 1 70 1.24e-17 77.8
MS.gene017324.t1 AT4G05050 53.750 80 37 0 161 240 67 146 1.46e-17 77.8
MS.gene017324.t1 AT4G05050 58.571 70 29 0 171 240 1 70 1.56e-17 77.4
MS.gene017324.t1 AT4G05320 53.750 80 37 0 161 240 67 146 1.46e-17 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 1 70 1.56e-17 77.4
MS.gene017324.t1 AT3G62250 58.571 70 29 0 171 240 1 70 1.48e-17 77.8
MS.gene017324.t1 AT2G35635 58.571 70 29 0 171 240 1 70 1.50e-17 77.8
MS.gene017324.t1 AT1G31340 58.571 70 29 0 171 240 1 70 1.54e-17 77.8
MS.gene017324.t1 AT1G23410 58.571 70 29 0 171 240 1 70 1.58e-17 77.4
MS.gene017324.t1 AT5G37640 54.321 81 37 0 160 240 68 148 3.55e-17 79.7
MS.gene017324.t1 AT5G37640 52.500 80 38 0 161 240 145 224 1.33e-14 72.4
MS.gene017324.t1 AT5G37640 53.086 81 35 2 161 240 223 301 6.98e-14 70.5
MS.gene017324.t1 AT4G05050 58.571 70 29 0 171 240 1 70 6.11e-17 77.8
MS.gene017324.t1 AT4G05050 58.571 70 29 0 171 240 77 146 6.11e-17 77.8
MS.gene017324.t1 AT4G05050 58.571 70 29 0 171 240 153 222 6.11e-17 77.8
MS.gene017324.t1 AT4G05050 58.571 70 29 0 171 240 1 70 6.11e-17 77.8
MS.gene017324.t1 AT4G05050 58.571 70 29 0 171 240 77 146 6.11e-17 77.8
MS.gene017324.t1 AT4G05050 58.571 70 29 0 171 240 153 222 6.11e-17 77.8
MS.gene017324.t1 AT4G05050 58.571 70 29 0 171 240 1 70 6.11e-17 77.8
MS.gene017324.t1 AT4G05050 58.571 70 29 0 171 240 77 146 6.11e-17 77.8
MS.gene017324.t1 AT4G05050 58.571 70 29 0 171 240 153 222 6.11e-17 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 1 70 6.11e-17 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 77 146 6.11e-17 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 153 222 6.11e-17 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 1 70 6.11e-17 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 77 146 6.11e-17 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 153 222 6.11e-17 77.8
MS.gene017324.t1 AT5G37930 30.357 168 113 2 13 177 183 349 9.02e-17 79.0
MS.gene017324.t1 AT3G09790 53.750 80 37 0 161 240 69 148 9.39e-17 79.7
MS.gene017324.t1 AT3G09790 57.143 70 30 0 171 240 552 621 5.95e-15 74.3
MS.gene017324.t1 AT3G09790 51.429 70 34 0 171 240 3 72 5.48e-13 68.6
MS.gene017324.t1 AT3G09790 53.750 80 37 0 161 240 69 148 9.39e-17 79.7
MS.gene017324.t1 AT3G09790 57.143 70 30 0 171 240 552 621 5.95e-15 74.3
MS.gene017324.t1 AT3G09790 51.429 70 34 0 171 240 3 72 5.48e-13 68.6
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 1 70 1.64e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 77 146 1.64e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 153 222 1.64e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 229 298 1.64e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 1 70 1.64e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 77 146 1.64e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 153 222 1.64e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 229 298 1.64e-16 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 1 70 1.64e-16 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 77 146 1.64e-16 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 153 222 1.64e-16 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 229 298 1.64e-16 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 1 70 1.64e-16 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 77 146 1.64e-16 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 153 222 1.64e-16 77.8
MS.gene017324.t1 AT4G02890 58.571 70 29 0 171 240 229 298 1.64e-16 77.8
MS.gene017324.t1 AT5G03240 58.571 70 29 0 171 240 1 70 1.66e-16 77.8
MS.gene017324.t1 AT5G03240 58.571 70 29 0 171 240 77 146 1.66e-16 77.8
MS.gene017324.t1 AT5G03240 58.571 70 29 0 171 240 153 222 1.66e-16 77.8
MS.gene017324.t1 AT5G03240 58.571 70 29 0 171 240 229 298 1.66e-16 77.8
MS.gene017324.t1 AT5G03240 58.571 70 29 0 171 240 1 70 1.66e-16 77.8
MS.gene017324.t1 AT5G03240 58.571 70 29 0 171 240 77 146 1.66e-16 77.8
MS.gene017324.t1 AT5G03240 58.571 70 29 0 171 240 153 222 1.66e-16 77.8
MS.gene017324.t1 AT5G03240 58.571 70 29 0 171 240 229 298 1.66e-16 77.8
MS.gene017324.t1 AT5G03240 58.571 70 29 0 171 240 1 70 1.66e-16 77.8
MS.gene017324.t1 AT5G03240 58.571 70 29 0 171 240 77 146 1.66e-16 77.8
MS.gene017324.t1 AT5G03240 58.571 70 29 0 171 240 153 222 1.66e-16 77.8
MS.gene017324.t1 AT5G03240 58.571 70 29 0 171 240 229 298 1.66e-16 77.8
MS.gene017324.t1 AT5G20620 58.571 70 29 0 171 240 1 70 1.66e-16 77.8
MS.gene017324.t1 AT5G20620 58.571 70 29 0 171 240 77 146 1.66e-16 77.8
MS.gene017324.t1 AT5G20620 58.571 70 29 0 171 240 153 222 1.66e-16 77.8
MS.gene017324.t1 AT5G20620 58.571 70 29 0 171 240 229 298 1.66e-16 77.8
MS.gene017324.t1 AT1G55060 57.143 70 30 0 171 240 77 146 2.23e-16 76.3
MS.gene017324.t1 AT1G55060 52.500 80 38 0 161 240 143 222 6.66e-16 75.1
MS.gene017324.t1 AT1G55060 52.857 70 33 0 171 240 1 70 1.96e-14 70.9
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 1 70 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 77 146 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 153 222 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 229 298 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 305 374 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 1 70 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 77 146 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 153 222 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 229 298 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 305 374 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 1 70 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 77 146 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 153 222 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 229 298 2.61e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 305 374 2.61e-16 77.8
MS.gene017324.t1 AT5G20620 58.571 70 29 0 171 240 1 70 2.62e-16 77.8
MS.gene017324.t1 AT5G20620 58.571 70 29 0 171 240 77 146 2.62e-16 77.8
MS.gene017324.t1 AT5G20620 58.571 70 29 0 171 240 153 222 2.62e-16 77.8
MS.gene017324.t1 AT5G20620 58.571 70 29 0 171 240 229 298 2.62e-16 77.8
MS.gene017324.t1 AT5G20620 58.571 70 29 0 171 240 305 374 2.62e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 1 70 3.42e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 77 146 3.42e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 153 222 3.42e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 229 298 3.42e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 305 374 3.42e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 381 450 3.42e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 1 70 3.42e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 77 146 3.42e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 153 222 3.42e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 229 298 3.42e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 305 374 3.42e-16 77.8
MS.gene017324.t1 AT4G05320 58.571 70 29 0 171 240 381 450 3.42e-16 77.8
MS.gene017324.t1 AT1G53930 50.000 70 35 0 171 240 86 155 1.05e-14 70.1
MS.gene017324.t1 AT1G66610 28.571 154 104 3 6 153 180 333 2.95e-14 72.0
MS.gene017324.t1 AT1G66620 27.778 162 109 4 13 167 114 274 2.72e-12 65.9
MS.gene017324.t1 AT5G37900 29.012 162 108 3 14 168 74 235 1.28e-11 63.2
MS.gene017324.t1 AT5G37870 26.190 168 118 4 12 173 114 281 2.46e-11 62.8

Find 57 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCTACTATTATGATATTT+TGG 0.157177 5.1:+59702833 MS.gene017324:CDS
AGCAAAGTCACAACCTAAAA+TGG 0.183798 5.1:-59702586 None:intergenic
CCTTGTGCAAATGGCTAAAA+TGG 0.220076 5.1:-59702632 None:intergenic
AGGGGCTACCATATGAAAAT+TGG 0.296646 5.1:-59702665 None:intergenic
TGTATGATTTATCTAGCTAT+AGG 0.332023 5.1:-59703450 None:intergenic
CACCAGCATTATCTGTTCCT+TGG 0.374771 5.1:+59703323 MS.gene017324:CDS
GGCTTCATCATTAAACTTCA+AGG 0.396925 5.1:-59702697 None:intergenic
AAGGGATAATCTTTCCAGTC+AGG 0.403562 5.1:-59703229 None:intergenic
ACTGCTCTCTTGAAGAATAA+TGG 0.403825 5.1:-59702718 None:intergenic
GTATGATTTATCTAGCTATA+GGG 0.406518 5.1:-59703449 None:intergenic
GGTAAAGGATGGACTTATCT+TGG 0.415625 5.1:-59703391 None:intergenic
CGAAAATTTGTGACAAGGAA+TGG 0.420270 5.1:+59703291 MS.gene017324:CDS
GCAAAGTCACAACCTAAAAT+GGG 0.423707 5.1:-59702585 None:intergenic
AATTTCTAACTTGAGTAGTT+CGG 0.430490 5.1:-59702964 None:intergenic
ATTCTTCAAGAGAGCAGTGC+TGG 0.436799 5.1:+59702723 MS.gene017324:CDS
TTCGAGAATCCTTGTGCAAA+TGG 0.437698 5.1:-59702641 None:intergenic
CATCTAGTTGCTTATTTCCA+AGG 0.440781 5.1:-59703340 None:intergenic
TGGAAAGATTATCCCTTTGA+AGG 0.467459 5.1:+59703235 MS.gene017324:CDS
GCAGTCAATATTAGCTGCAT+TGG 0.470841 5.1:+59702789 MS.gene017324:CDS
AAAACTGTGGAACTTTGCAC+TGG 0.471427 5.1:-59702871 None:intergenic
AACTTCAAGGTGACAAAGAA+GGG 0.477193 5.1:-59702684 None:intergenic
GAGGGTCGCCGACGAGGTAA+AGG 0.477240 5.1:-59703406 None:intergenic
CAAGGAGGAATAACTTATAG+TGG 0.483570 5.1:+59702516 MS.gene017324:CDS
TCTGAACTCTCCACCTTCAA+AGG 0.496142 5.1:-59703248 None:intergenic
CCTAAAATGGGGCAGTAACA+TGG 0.498503 5.1:-59702573 None:intergenic
GTAGCGTGGTTCAGAAGAGT+TGG 0.511055 5.1:-59702817 None:intergenic
AAACTTCAAGGTGACAAAGA+AGG 0.527821 5.1:-59702685 None:intergenic
AGGGATAATCTTTCCAGTCA+GGG 0.534012 5.1:-59703228 None:intergenic
TTGGATGTCGTAATCATCAA+TGG 0.545303 5.1:-59703372 None:intergenic
CTGAACTCTCCACCTTCAAA+GGG 0.545740 5.1:-59703247 None:intergenic
TTCCAAGGAACAGATAATGC+TGG 0.548367 5.1:-59703325 None:intergenic
TAGCGTGGTTCAGAAGAGTT+GGG 0.548704 5.1:-59702816 None:intergenic
GAATAACTTATAGTGGAAAG+AGG 0.550913 5.1:+59702523 MS.gene017324:CDS
CATGATGAGGGTCGCCGACG+AGG 0.562993 5.1:-59703412 None:intergenic
TTCTTCAAGAGAGCAGTGCT+GGG 0.566039 5.1:+59702724 MS.gene017324:CDS
AAATAATAGAACTGAGAGTG+TGG 0.568562 5.1:+59702761 MS.gene017324:CDS
GAGTGGTTGTCTTCATGATG+AGG 0.569206 5.1:-59703425 None:intergenic
GAAGGTGGAGAGTTCAGATA+CGG 0.573368 5.1:+59703253 MS.gene017324:CDS
TTATCTAGCTATAGGGTGAG+TGG 0.581253 5.1:-59703442 None:intergenic
GAATGTAAAACACGGTTGCA+AGG 0.585808 5.1:+59702498 MS.gene017324:CDS
AAAGATTATCCCTTTGAAGG+TGG 0.598975 5.1:+59703238 MS.gene017324:CDS
AATAATAGAACTGAGAGTGT+GGG 0.601725 5.1:+59702762 MS.gene017324:CDS
GAGTTTCTAAAGAAACTCGT+TGG 0.603280 5.1:-59702905 None:intergenic
GTCGCCGACGAGGTAAAGGA+TGG 0.603797 5.1:-59703402 None:intergenic
AAGTCCATCCTTTACCTCGT+CGG 0.626464 5.1:+59703398 MS.gene017324:CDS
AGTGGTTGTCTTCATGATGA+GGG 0.639161 5.1:-59703424 None:intergenic
ACTTCAAGGTGACAAAGAAG+GGG 0.652282 5.1:-59702683 None:intergenic
TGTCGTAATCATCAATGGTG+AGG 0.657734 5.1:-59703367 None:intergenic
AAAATATCATAATAGTAGCG+TGG 0.660800 5.1:-59702831 None:intergenic
CGTAATCATCAATGGTGAGG+CGG 0.661754 5.1:-59703364 None:intergenic
CAAAGTCACAACCTAAAATG+GGG 0.667460 5.1:-59702584 None:intergenic
GGTGGAGAGTTCAGATACGG+TGG 0.683257 5.1:+59703256 MS.gene017324:CDS
GAAAGCGAAAATTTGTGACA+AGG 0.683839 5.1:+59703286 MS.gene017324:CDS
TCATGTCTGAATGTAAAACA+CGG 0.708463 5.1:+59702490 None:intergenic
CGTGGTTCAGAAGAGTTGGG+AGG 0.713627 5.1:-59702813 None:intergenic
TGTAAAACACGGTTGCAAGG+AGG 0.715857 5.1:+59702501 MS.gene017324:CDS
AAAGGAGATAGATACCTTGG+GGG 0.746296 5.1:-59702994 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACCAAATTGAATTAAA+AGG - chr5.1:59702944-59702963 None:intergenic 15.0%
!! GAAAAAAAAAAAACTAAAAC+AGG - chr5.1:59703140-59703159 None:intergenic 15.0%
!! GAATTTCATATAAAATGATA+GGG - chr5.1:59703084-59703103 None:intergenic 15.0%
!! TGAATTTCATATAAAATGAT+AGG - chr5.1:59703085-59703104 None:intergenic 15.0%
!!! GTTTTAGTTTTTTTTTTTTC+TGG + chr5.1:59703140-59703159 MS.gene017324:intron 15.0%
!!! TTATTATTGATTAGTTTTGT+TGG + chr5.1:59703172-59703191 MS.gene017324:intron 15.0%
! AAAATATCATAATAGTAGCG+TGG - chr5.1:59702834-59702853 None:intergenic 25.0%
! AATTTCTAACTTGAGTAGTT+CGG - chr5.1:59702967-59702986 None:intergenic 25.0%
!! ACGCTACTATTATGATATTT+TGG + chr5.1:59702833-59702852 MS.gene017324:CDS 25.0%
!!! ACTATTATGATATTTTGGCT+AGG + chr5.1:59702838-59702857 MS.gene017324:CDS 25.0%
!!! ATTAGTTTTGTTGGTAATTG+TGG + chr5.1:59703181-59703200 MS.gene017324:intron 25.0%
!!! GAGTTCCTTTTAATTCAATT+TGG + chr5.1:59702936-59702955 MS.gene017324:CDS 25.0%
AAATAATAGAACTGAGAGTG+TGG + chr5.1:59702761-59702780 MS.gene017324:CDS 30.0%
TGATAGGGTTAAAATTCGAA+AGG - chr5.1:59703069-59703088 None:intergenic 30.0%
TTAATTCAGAAGAACAAGTG+AGG - chr5.1:59703026-59703045 None:intergenic 30.0%
! AATAATAGAACTGAGAGTGT+GGG + chr5.1:59702762-59702781 MS.gene017324:CDS 30.0%
! GAATAACTTATAGTGGAAAG+AGG + chr5.1:59702523-59702542 MS.gene017324:CDS 30.0%
! TCTCGAATCCAATTTTCATA+TGG + chr5.1:59702657-59702676 MS.gene017324:CDS 30.0%
AAACTTCAAGGTGACAAAGA+AGG - chr5.1:59702688-59702707 None:intergenic 35.0%
AACTTCAAGGTGACAAAGAA+GGG - chr5.1:59702687-59702706 None:intergenic 35.0%
ACTGCTCTCTTGAAGAATAA+TGG - chr5.1:59702721-59702740 None:intergenic 35.0%
AGCAAAGTCACAACCTAAAA+TGG - chr5.1:59702589-59702608 None:intergenic 35.0%
AGTAAAGGAGATAGATACCT+TGG - chr5.1:59703000-59703019 None:intergenic 35.0%
CAAAGTCACAACCTAAAATG+GGG - chr5.1:59702587-59702606 None:intergenic 35.0%
CAAGGAGGAATAACTTATAG+TGG + chr5.1:59702516-59702535 MS.gene017324:CDS 35.0%
CATCTAGTTGCTTATTTCCA+AGG - chr5.1:59703343-59703362 None:intergenic 35.0%
CGAAAATTTGTGACAAGGAA+TGG + chr5.1:59703291-59703310 MS.gene017324:CDS 35.0%
GAAAGCGAAAATTTGTGACA+AGG + chr5.1:59703286-59703305 MS.gene017324:CDS 35.0%
GAACAAGTGAGGTAAAGTAA+AGG - chr5.1:59703015-59703034 None:intergenic 35.0%
GCAAAGTCACAACCTAAAAT+GGG - chr5.1:59702588-59702607 None:intergenic 35.0%
GGCTTCATCATTAAACTTCA+AGG - chr5.1:59702700-59702719 None:intergenic 35.0%
GTAAAGGAGATAGATACCTT+GGG - chr5.1:59702999-59703018 None:intergenic 35.0%
TAAAGGAGATAGATACCTTG+GGG - chr5.1:59702998-59703017 None:intergenic 35.0%
TGGAAAGATTATCCCTTTGA+AGG + chr5.1:59703235-59703254 MS.gene017324:CDS 35.0%
TTGGATGTCGTAATCATCAA+TGG - chr5.1:59703375-59703394 None:intergenic 35.0%
! AAAGATTATCCCTTTGAAGG+TGG + chr5.1:59703238-59703257 MS.gene017324:CDS 35.0%
! GAACTTTGCACTGGATTTTT+GGG - chr5.1:59702865-59702884 None:intergenic 35.0%
! GAGTTTCTAAAGAAACTCGT+TGG - chr5.1:59702908-59702927 None:intergenic 35.0%
AAAACTGTGGAACTTTGCAC+TGG - chr5.1:59702874-59702893 None:intergenic 40.0%
AAAGGAGATAGATACCTTGG+GGG - chr5.1:59702997-59703016 None:intergenic 40.0%
AAGGGATAATCTTTCCAGTC+AGG - chr5.1:59703232-59703251 None:intergenic 40.0%
ACTTCAAGGTGACAAAGAAG+GGG - chr5.1:59702686-59702705 None:intergenic 40.0%
AGAAATTTGCATAACCCCCA+AGG + chr5.1:59702980-59702999 MS.gene017324:CDS 40.0%
AGGGATAATCTTTCCAGTCA+GGG - chr5.1:59703231-59703250 None:intergenic 40.0%
AGGGGCTACCATATGAAAAT+TGG - chr5.1:59702668-59702687 None:intergenic 40.0%
AGTGGTTGTCTTCATGATGA+GGG - chr5.1:59703427-59703446 None:intergenic 40.0%
CCTTGTGCAAATGGCTAAAA+TGG - chr5.1:59702635-59702654 None:intergenic 40.0%
GAATGTAAAACACGGTTGCA+AGG + chr5.1:59702498-59702517 MS.gene017324:CDS 40.0%
GCAGTCAATATTAGCTGCAT+TGG + chr5.1:59702789-59702808 MS.gene017324:CDS 40.0%
GGACATTCTTCGAAAAACTG+TGG - chr5.1:59702887-59702906 None:intergenic 40.0%
TGTCGTAATCATCAATGGTG+AGG - chr5.1:59703370-59703389 None:intergenic 40.0%
TTCCAAGGAACAGATAATGC+TGG - chr5.1:59703328-59703347 None:intergenic 40.0%
TTCGAGAATCCTTGTGCAAA+TGG - chr5.1:59702644-59702663 None:intergenic 40.0%
! ACAAATTTTCGCTTTCACGC+TGG - chr5.1:59703282-59703301 None:intergenic 40.0%
! ATTTTCGTACAAACCCTGAC+TGG + chr5.1:59703215-59703234 MS.gene017324:CDS 40.0%
! GGAACTTTGCACTGGATTTT+TGG - chr5.1:59702866-59702885 None:intergenic 40.0%
! GGTAAAGGATGGACTTATCT+TGG - chr5.1:59703394-59703413 None:intergenic 40.0%
!! CCATTTTAGCCATTTGCACA+AGG + chr5.1:59702632-59702651 MS.gene017324:CDS 40.0%
AAGTCCATCCTTTACCTCGT+CGG + chr5.1:59703398-59703417 MS.gene017324:CDS 45.0%
ATTCTTCAAGAGAGCAGTGC+TGG + chr5.1:59702723-59702742 MS.gene017324:CDS 45.0%
CACCAGCATTATCTGTTCCT+TGG + chr5.1:59703323-59703342 MS.gene017324:CDS 45.0%
CCTAAAATGGGGCAGTAACA+TGG - chr5.1:59702576-59702595 None:intergenic 45.0%
CGTAATCATCAATGGTGAGG+CGG - chr5.1:59703367-59703386 None:intergenic 45.0%
CTGAACTCTCCACCTTCAAA+GGG - chr5.1:59703250-59703269 None:intergenic 45.0%
GAAGGTGGAGAGTTCAGATA+CGG + chr5.1:59703253-59703272 MS.gene017324:CDS 45.0%
GAGTGGTTGTCTTCATGATG+AGG - chr5.1:59703428-59703447 None:intergenic 45.0%
TAGCGTGGTTCAGAAGAGTT+GGG - chr5.1:59702819-59702838 None:intergenic 45.0%
TCTGAACTCTCCACCTTCAA+AGG - chr5.1:59703251-59703270 None:intergenic 45.0%
TGTAAAACACGGTTGCAAGG+AGG + chr5.1:59702501-59702520 MS.gene017324:CDS 45.0%
TTCTTCAAGAGAGCAGTGCT+GGG + chr5.1:59702724-59702743 MS.gene017324:CDS 45.0%
! CCATGTTACTGCCCCATTTT+AGG + chr5.1:59702573-59702592 MS.gene017324:CDS 45.0%
GTAGCGTGGTTCAGAAGAGT+TGG - chr5.1:59702820-59702839 None:intergenic 50.0%
CGTGGTTCAGAAGAGTTGGG+AGG - chr5.1:59702816-59702835 None:intergenic 55.0%
GGTGGAGAGTTCAGATACGG+TGG + chr5.1:59703256-59703275 MS.gene017324:CDS 55.0%
GTCGCCGACGAGGTAAAGGA+TGG - chr5.1:59703405-59703424 None:intergenic 60.0%
CATGATGAGGGTCGCCGACG+AGG - chr5.1:59703415-59703434 None:intergenic 65.0%
GAGGGTCGCCGACGAGGTAA+AGG - chr5.1:59703409-59703428 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 59702492 59703460 59702492 ID=MS.gene017324
chr5.1 mRNA 59702492 59703460 59702492 ID=MS.gene017324.t1;Parent=MS.gene017324
chr5.1 exon 59702492 59703001 59702492 ID=MS.gene017324.t1.exon1;Parent=MS.gene017324.t1
chr5.1 CDS 59702492 59703001 59702492 ID=cds.MS.gene017324.t1;Parent=MS.gene017324.t1
chr5.1 exon 59703209 59703460 59703209 ID=MS.gene017324.t1.exon2;Parent=MS.gene017324.t1
chr5.1 CDS 59703209 59703460 59703209 ID=cds.MS.gene017324.t1;Parent=MS.gene017324.t1
Gene Sequence

>MS.gene017324

ATGTCTGAATGTAAAACACGGTTGCAAGGAGGAATAACTTATAGTGGAAAGAGGAAGCATGAAGAAGAATGCATCTATGTGCCATGTTACTGCCCCATTTTAGGTTGTGACTTTGCTGCGTCATCTAAAGTGTTATCTAACCATTTTAGCCATTTGCACAAGGATTCTCGAATCCAATTTTCATATGGTAGCCCCTTCTTTGTCACCTTGAAGTTTAATGATGAAGCCATTATTCTTCAAGAGAGCAGTGCTGGGAAATTGTTCATTCTAAATAATAGAACTGAGAGTGTGGGAAATGCAGTCAATATTAGCTGCATTGGTCCTCCCAACTCTTCTGAACCACGCTACTATTATGATATTTTGGCTAGGTCCCAAAAATCCAGTGCAAAGTTCCACAGTTTTTCGAAGAATGTCCAACGAGTTTCTTTAGAAACTCTTTCATCAGAGTTCCTTTTAATTCAATTTGGTTTTTCCGAACTACTCAAGTTAGAAATTTGCATAACCCCCAAGGTATCTATCTCCTTTACTTTACCTCACTTGTTCTTCTGAATTAAAGTCTTGATATTTTCTTTTTCCTTTCGAATTTTAACCCTATCATTTTATATGAAATTCATTCGTTTTTTCAAATAACTAAAATGATTGTAACCTGTTTTAGTTTTTTTTTTTTCTGGTGTTATTTATTATTATTGATTAGTTTTGTTGGTAATTGTGGTGTAGATGCAAATTTTCGTACAAACCCTGACTGGAAAGATTATCCCTTTGAAGGTGGAGAGTTCAGATACGGTGGCCAGCGTGAAAGCGAAAATTTGTGACAAGGAATGGTTCATATTGCACCAGCATTATCTGTTCCTTGGAAATAAGCAACTAGATGACCGCCTCACCATTGATGATTACGACATCCAAGATAAGTCCATCCTTTACCTCGTCGGCGACCCTCATCATGAAGACAACCACTCACCCTATAGCTAG

Protein sequence

>MS.gene017324.t1

MSECKTRLQGGITYSGKRKHEEECIYVPCYCPILGCDFAASSKVLSNHFSHLHKDSRIQFSYGSPFFVTLKFNDEAIILQESSAGKLFILNNRTESVGNAVNISCIGPPNSSEPRYYYDILARSQKSSAKFHSFSKNVQRVSLETLSSEFLLIQFGFSELLKLEICITPKMQIFVQTLTGKIIPLKVESSDTVASVKAKICDKEWFILHQHYLFLGNKQLDDRLTIDDYDIQDKSILYLVGDPHHEDNHSPYS