AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017300.t1 MTR_5g076370 94.100 339 20 0 1 339 1 339 0.0 654
MS.gene017300.t1 MTR_5g076660 66.962 339 111 1 1 339 1 338 1.53e-152 432
MS.gene017300.t1 MTR_7g024290 67.937 315 96 3 26 339 4 314 3.33e-145 412
MS.gene017300.t1 MTR_5g067400 66.667 312 100 2 28 339 6 313 1.06e-144 411
MS.gene017300.t1 MTR_1g046640 66.667 312 99 3 28 339 6 312 1.61e-143 408
MS.gene017300.t1 MTR_5g076720 62.757 341 120 3 2 339 51 387 6.49e-143 409
MS.gene017300.t1 MTR_1g046650 65.064 312 104 3 28 339 6 312 3.77e-141 402
MS.gene017300.t1 MTR_1g046650 63.863 321 111 3 19 339 28 343 4.68e-141 403
MS.gene017300.t1 MTR_7g094390 63.444 331 117 2 9 339 148 474 1.76e-139 404
MS.gene017300.t1 MTR_1g046650 66.323 291 94 2 49 339 26 312 1.78e-134 385
MS.gene017300.t1 MTR_2g038420 61.791 335 119 4 10 339 2 332 4.12e-131 377
MS.gene017300.t1 MTR_2g038430 58.309 343 126 4 10 339 2 340 1.04e-129 374
MS.gene017300.t1 MTR_5g076810 69.145 269 79 2 72 339 2 267 1.91e-126 363
MS.gene017300.t1 MTR_5g061290 60.123 326 118 5 20 339 5 324 3.79e-126 365
MS.gene017300.t1 MTR_5g076520 60.759 316 116 4 26 337 4 315 5.46e-121 351
MS.gene017300.t1 MTR_5g076505 60.068 293 111 2 50 339 23 312 7.67e-117 340
MS.gene017300.t1 MTR_1g046650 65.992 247 80 2 93 339 1 243 1.77e-111 324
MS.gene017300.t1 MTR_5g076820 63.846 260 86 4 45 300 30 285 1.15e-105 311
MS.gene017300.t1 MTR_5g076540 65.753 219 74 1 31 249 9 226 1.13e-94 281
MS.gene017300.t1 MTR_5g077020 59.091 198 67 4 76 265 17 208 2.82e-67 211
MS.gene017300.t1 MTR_4g094468 42.915 247 136 4 17 263 83 324 3.81e-62 201
MS.gene017300.t1 MTR_4g058025 76.106 113 26 1 104 215 14 126 7.24e-51 167
MS.gene017300.t1 MTR_5g092700 63.014 73 27 0 267 339 1 73 1.15e-22 92.8
MS.gene017300.t1 MTR_4g073580 63.014 73 27 0 267 339 1 73 1.15e-22 92.8
MS.gene017300.t1 MTR_7g105080 63.014 73 27 0 267 339 1 73 2.25e-22 91.3
MS.gene017300.t1 MTR_3g092130 63.014 73 27 0 267 339 1 73 2.25e-22 91.3
MS.gene017300.t1 MTR_1g059690 63.014 73 27 0 267 339 1 73 2.25e-22 91.3
MS.gene017300.t1 MTR_4g073580 63.014 73 27 0 267 339 1 73 3.38e-22 92.4
MS.gene017300.t1 MTR_4g088485 57.831 83 35 0 257 339 128 210 3.47e-22 93.2
MS.gene017300.t1 MTR_4g088485 63.014 73 27 0 267 339 1 73 7.14e-22 92.4
MS.gene017300.t1 MTR_1g066390 57.831 83 35 0 257 339 67 149 3.70e-22 93.6
MS.gene017300.t1 MTR_1g066390 57.831 83 35 0 257 339 143 225 3.70e-22 93.6
MS.gene017300.t1 MTR_1g066390 63.014 73 27 0 267 339 1 73 7.61e-22 92.8
MS.gene017300.t1 MTR_8g088060 63.014 73 27 0 267 339 1 73 4.07e-22 91.7
MS.gene017300.t1 MTR_7g116360 57.831 83 35 0 257 339 67 149 4.09e-22 93.6
MS.gene017300.t1 MTR_7g116360 57.831 83 35 0 257 339 143 225 4.09e-22 93.6
MS.gene017300.t1 MTR_7g116360 63.014 73 27 0 267 339 1 73 8.00e-22 92.8
MS.gene017300.t1 MTR_3g092130 63.014 73 27 0 267 339 1 73 4.28e-22 90.9
MS.gene017300.t1 MTR_5g033960 63.014 73 27 0 267 339 1 73 4.51e-22 91.3
MS.gene017300.t1 MTR_7g116360 63.514 74 27 0 266 339 48 121 6.07e-22 94.0
MS.gene017300.t1 MTR_7g116360 57.831 83 35 0 257 339 115 197 1.05e-21 93.6
MS.gene017300.t1 MTR_7g116360 57.831 83 35 0 257 339 191 273 1.05e-21 93.6
MS.gene017300.t1 MTR_5g061310 61.111 72 28 0 267 338 2 73 8.16e-22 88.2
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 67 149 9.25e-22 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 143 225 9.25e-22 93.6
MS.gene017300.t1 MTR_8g018230 63.014 73 27 0 267 339 1 73 1.92e-21 92.4
MS.gene017300.t1 MTR_6g061930 57.831 83 35 0 257 339 67 149 1.39e-21 93.2
MS.gene017300.t1 MTR_6g061930 57.831 83 35 0 257 339 204 286 1.39e-21 93.2
MS.gene017300.t1 MTR_6g061930 63.014 73 27 0 267 339 1 73 2.76e-21 92.4
MS.gene017300.t1 MTR_4g080920 56.627 83 36 0 257 339 67 149 1.51e-21 92.0
MS.gene017300.t1 MTR_4g080920 61.644 73 28 0 267 339 1 73 6.82e-21 90.1
MS.gene017300.t1 MTR_4g080920 46.988 83 44 0 257 339 143 225 2.09e-14 72.0
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 67 149 1.58e-21 93.6
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 143 225 1.58e-21 93.6
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 219 301 1.58e-21 93.6
MS.gene017300.t1 MTR_4g081010 63.014 73 27 0 267 339 1 73 2.93e-21 92.8
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 67 149 1.65e-21 92.8
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 143 225 1.65e-21 92.8
MS.gene017300.t1 MTR_4g081010 63.014 73 27 0 267 339 1 73 3.03e-21 92.0
MS.gene017300.t1 MTR_4g091580 57.831 83 35 0 257 339 295 377 3.53e-21 94.7
MS.gene017300.t1 MTR_4g091580 57.831 83 35 0 257 339 67 149 8.68e-21 93.6
MS.gene017300.t1 MTR_4g091580 57.831 83 35 0 257 339 143 225 8.68e-21 93.6
MS.gene017300.t1 MTR_4g091580 57.831 83 35 0 257 339 219 301 8.68e-21 93.6
MS.gene017300.t1 MTR_4g091580 57.831 83 35 0 257 339 371 453 8.68e-21 93.6
MS.gene017300.t1 MTR_4g091580 57.831 83 35 0 257 339 447 529 8.68e-21 93.6
MS.gene017300.t1 MTR_4g091580 63.014 73 27 0 267 339 1 73 1.49e-20 92.8
MS.gene017300.t1 MTR_4g091580 57.831 83 35 0 257 339 67 149 3.76e-21 93.6
MS.gene017300.t1 MTR_4g091580 57.831 83 35 0 257 339 143 225 3.76e-21 93.6
MS.gene017300.t1 MTR_4g091580 57.831 83 35 0 257 339 295 377 3.76e-21 93.6
MS.gene017300.t1 MTR_4g091580 63.014 73 27 0 267 339 1 73 6.80e-21 92.8
MS.gene017300.t1 MTR_4g091580 56.627 83 36 0 257 339 219 301 1.31e-20 92.0
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 67 149 3.84e-21 93.6
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 143 225 3.84e-21 93.6
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 219 301 3.84e-21 93.6
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 295 377 3.84e-21 93.6
MS.gene017300.t1 MTR_4g081010 63.014 73 27 0 267 339 1 73 6.94e-21 92.8
MS.gene017300.t1 MTR_4g080797 57.831 83 35 0 257 339 67 149 3.88e-21 93.6
MS.gene017300.t1 MTR_4g080797 57.831 83 35 0 257 339 143 225 3.88e-21 93.6
MS.gene017300.t1 MTR_4g080797 57.831 83 35 0 257 339 219 301 3.88e-21 93.6
MS.gene017300.t1 MTR_4g080797 57.831 83 35 0 257 339 295 377 3.88e-21 93.6
MS.gene017300.t1 MTR_4g080797 63.014 73 27 0 267 339 1 73 7.01e-21 92.8
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 67 149 3.88e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 143 225 3.88e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 219 301 3.88e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 295 377 3.88e-21 93.6
MS.gene017300.t1 MTR_8g018230 63.014 73 27 0 267 339 1 73 7.01e-21 92.8
MS.gene017300.t1 MTR_8g081020 57.831 83 35 0 257 339 67 149 3.91e-21 93.6
MS.gene017300.t1 MTR_8g081020 57.831 83 35 0 257 339 143 225 3.91e-21 93.6
MS.gene017300.t1 MTR_8g081020 57.831 83 35 0 257 339 219 301 3.91e-21 93.6
MS.gene017300.t1 MTR_8g081020 57.831 83 35 0 257 339 295 377 3.91e-21 93.6
MS.gene017300.t1 MTR_8g081020 63.014 73 27 0 267 339 1 73 7.01e-21 92.8
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 67 149 6.81e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 143 225 6.81e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 219 301 6.81e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 295 377 6.81e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 371 453 6.81e-21 93.6
MS.gene017300.t1 MTR_8g018230 63.014 73 27 0 267 339 1 73 1.18e-20 92.8
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 67 149 6.81e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 143 225 6.81e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 219 301 6.81e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 295 377 6.81e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 371 453 6.81e-21 93.6
MS.gene017300.t1 MTR_8g018230 63.014 73 27 0 267 339 1 73 1.18e-20 92.8
MS.gene017300.t1 MTR_8g479250 59.036 83 34 0 257 339 131 213 7.86e-21 91.3
MS.gene017300.t1 MTR_8g479250 45.122 82 34 1 257 338 207 277 4.15e-12 66.2
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 67 149 8.68e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 143 225 8.68e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 219 301 8.68e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 295 377 8.68e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 371 453 8.68e-21 93.6
MS.gene017300.t1 MTR_8g018230 57.831 83 35 0 257 339 447 529 8.68e-21 93.6
MS.gene017300.t1 MTR_8g018230 63.014 73 27 0 267 339 1 73 1.49e-20 92.8
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 67 149 8.76e-21 93.6
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 143 225 8.76e-21 93.6
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 219 301 8.76e-21 93.6
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 295 377 8.76e-21 93.6
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 371 453 8.76e-21 93.6
MS.gene017300.t1 MTR_4g081010 57.831 83 35 0 257 339 447 529 8.76e-21 93.6
MS.gene017300.t1 MTR_4g081010 63.014 73 27 0 267 339 1 73 1.51e-20 92.8
MS.gene017300.t1 MTR_4g088495 57.831 83 35 0 257 339 67 149 1.15e-20 93.6
MS.gene017300.t1 MTR_4g088495 57.831 83 35 0 257 339 143 225 1.15e-20 93.6
MS.gene017300.t1 MTR_4g088495 57.831 83 35 0 257 339 219 301 1.15e-20 93.6
MS.gene017300.t1 MTR_4g088495 57.831 83 35 0 257 339 295 377 1.15e-20 93.6
MS.gene017300.t1 MTR_4g088495 57.831 83 35 0 257 339 371 453 1.15e-20 93.6
MS.gene017300.t1 MTR_4g088495 57.831 83 35 0 257 339 447 529 1.15e-20 93.6
MS.gene017300.t1 MTR_4g088495 57.831 83 35 0 257 339 523 605 1.15e-20 93.6
MS.gene017300.t1 MTR_4g088495 57.831 83 35 0 257 339 599 681 1.15e-20 93.6
MS.gene017300.t1 MTR_4g088495 57.831 83 35 0 257 339 675 757 1.15e-20 93.6
MS.gene017300.t1 MTR_4g088495 57.831 83 35 0 257 339 751 833 1.15e-20 93.6
MS.gene017300.t1 MTR_4g088495 63.014 73 27 0 267 339 1 73 2.38e-20 92.8
MS.gene017300.t1 MTR_8g038370 28.444 225 136 8 34 241 113 329 1.91e-19 88.6
MS.gene017300.t1 MTR_1g054335 26.891 238 156 8 47 268 71 306 1.85e-18 85.1
MS.gene017300.t1 MTR_3g017590 25.592 211 146 6 34 234 54 263 2.47e-18 84.3
MS.gene017300.t1 MTR_3g091510 27.459 244 160 7 34 261 61 303 3.66e-18 84.3
MS.gene017300.t1 MTR_7g093600 26.471 238 157 7 47 268 72 307 4.12e-18 84.0
MS.gene017300.t1 MTR_5g076350 55.405 74 32 1 267 339 8 81 7.42e-18 77.8
MS.gene017300.t1 MTR_5g076740 59.211 76 28 2 266 338 85 160 8.06e-18 80.1
MS.gene017300.t1 MTR_8g027520 26.506 249 168 7 34 268 45 292 3.25e-17 81.3
MS.gene017300.t1 MTR_8g027520 26.506 249 168 7 34 268 54 301 3.80e-17 81.3
MS.gene017300.t1 MTR_7g117415 25.301 249 171 6 34 268 62 309 4.28e-17 81.3
MS.gene017300.t1 MTR_1g008120 25.385 260 177 7 18 261 53 311 9.33e-17 80.5
MS.gene017300.t1 MTR_5g076760 64.912 57 20 0 277 333 5 61 9.66e-17 74.7
MS.gene017300.t1 MTR_7g085590 26.126 222 146 5 34 251 64 271 1.05e-16 79.7
MS.gene017300.t1 MTR_5g076780 58.065 62 26 0 278 339 1 62 7.65e-15 68.9
MS.gene017300.t1 MTR_4g009980 51.562 64 31 0 276 339 5 68 1.40e-14 68.2
MS.gene017300.t1 MTR_5g076340 53.333 75 33 2 267 339 9 83 2.99e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017300.t1 AT5G37930 34.286 245 151 3 31 274 108 343 9.07e-45 157
MS.gene017300.t1 AT5G37870 33.790 219 139 5 34 247 43 260 1.53e-35 130
MS.gene017300.t1 AT1G66620 29.845 258 173 6 12 263 19 274 3.60e-35 130
MS.gene017300.t1 AT5G37890 32.245 245 147 8 13 247 30 265 1.87e-33 125
MS.gene017300.t1 AT5G37910 29.046 241 164 4 13 247 15 254 2.49e-30 117
MS.gene017300.t1 AT1G66650 30.502 259 161 8 25 266 67 323 7.91e-29 114
MS.gene017300.t1 AT5G62800 32.796 186 118 5 34 213 41 225 7.58e-27 108
MS.gene017300.t1 AT5G62800 32.796 186 118 5 34 213 41 225 8.75e-27 108
MS.gene017300.t1 AT1G66630 28.685 251 157 5 34 263 47 296 5.54e-26 105
MS.gene017300.t1 AT1G66660 28.788 264 170 7 19 274 89 342 6.90e-25 103
MS.gene017300.t1 AT4G05050 57.831 83 35 0 257 339 67 149 7.11e-23 93.6
MS.gene017300.t1 AT4G05050 63.014 73 27 0 267 339 1 73 1.48e-22 92.8
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 67 149 7.11e-23 93.6
MS.gene017300.t1 AT4G05320 63.014 73 27 0 267 339 1 73 1.48e-22 92.8
MS.gene017300.t1 AT2G35635 63.014 73 27 0 267 339 1 73 1.55e-22 92.8
MS.gene017300.t1 AT1G31340 63.014 73 27 0 267 339 1 73 1.75e-22 92.4
MS.gene017300.t1 AT3G52590 63.014 73 27 0 267 339 1 73 2.78e-22 91.3
MS.gene017300.t1 AT2G36170 63.014 73 27 0 267 339 1 73 2.78e-22 91.3
MS.gene017300.t1 AT1G23410 63.014 73 27 0 267 339 1 73 2.99e-22 92.0
MS.gene017300.t1 AT2G47110 63.014 73 27 0 267 339 1 73 3.33e-22 91.7
MS.gene017300.t1 AT2G47110 63.014 73 27 0 267 339 1 73 3.33e-22 91.7
MS.gene017300.t1 AT3G62250 63.014 73 27 0 267 339 1 73 3.73e-22 91.7
MS.gene017300.t1 AT4G05050 57.831 83 35 0 257 339 67 149 4.29e-22 93.6
MS.gene017300.t1 AT4G05050 57.831 83 35 0 257 339 143 225 4.29e-22 93.6
MS.gene017300.t1 AT4G05050 63.014 73 27 0 267 339 1 73 8.38e-22 92.8
MS.gene017300.t1 AT4G05050 57.831 83 35 0 257 339 67 149 4.29e-22 93.6
MS.gene017300.t1 AT4G05050 57.831 83 35 0 257 339 143 225 4.29e-22 93.6
MS.gene017300.t1 AT4G05050 63.014 73 27 0 267 339 1 73 8.38e-22 92.8
MS.gene017300.t1 AT4G05050 57.831 83 35 0 257 339 67 149 4.29e-22 93.6
MS.gene017300.t1 AT4G05050 57.831 83 35 0 257 339 143 225 4.29e-22 93.6
MS.gene017300.t1 AT4G05050 63.014 73 27 0 267 339 1 73 8.38e-22 92.8
MS.gene017300.t1 AT4G02890 57.831 83 35 0 257 339 67 149 4.29e-22 93.6
MS.gene017300.t1 AT4G02890 57.831 83 35 0 257 339 143 225 4.29e-22 93.6
MS.gene017300.t1 AT4G02890 63.014 73 27 0 267 339 1 73 8.38e-22 92.8
MS.gene017300.t1 AT4G02890 57.831 83 35 0 257 339 67 149 4.29e-22 93.6
MS.gene017300.t1 AT4G02890 57.831 83 35 0 257 339 143 225 4.29e-22 93.6
MS.gene017300.t1 AT4G02890 63.014 73 27 0 267 339 1 73 8.38e-22 92.8
MS.gene017300.t1 AT5G37640 57.831 83 35 0 257 339 69 151 5.87e-22 95.1
MS.gene017300.t1 AT5G37640 55.422 83 37 0 257 339 145 227 2.87e-19 87.4
MS.gene017300.t1 AT5G37640 55.682 88 36 2 253 339 219 304 1.73e-17 82.4
MS.gene017300.t1 AT5G37640 54.795 73 33 0 267 339 3 75 1.85e-14 73.6
MS.gene017300.t1 AT5G03240 57.831 83 35 0 257 339 67 149 1.62e-21 93.6
MS.gene017300.t1 AT5G03240 57.831 83 35 0 257 339 143 225 1.62e-21 93.6
MS.gene017300.t1 AT5G03240 57.831 83 35 0 257 339 219 301 1.62e-21 93.6
MS.gene017300.t1 AT5G03240 63.014 73 27 0 267 339 1 73 3.08e-21 92.8
MS.gene017300.t1 AT5G03240 57.831 83 35 0 257 339 67 149 1.62e-21 93.6
MS.gene017300.t1 AT5G03240 57.831 83 35 0 257 339 143 225 1.62e-21 93.6
MS.gene017300.t1 AT5G03240 57.831 83 35 0 257 339 219 301 1.62e-21 93.6
MS.gene017300.t1 AT5G03240 63.014 73 27 0 267 339 1 73 3.08e-21 92.8
MS.gene017300.t1 AT5G03240 57.831 83 35 0 257 339 67 149 1.62e-21 93.6
MS.gene017300.t1 AT5G03240 57.831 83 35 0 257 339 143 225 1.62e-21 93.6
MS.gene017300.t1 AT5G03240 57.831 83 35 0 257 339 219 301 1.62e-21 93.6
MS.gene017300.t1 AT5G03240 63.014 73 27 0 267 339 1 73 3.08e-21 92.8
MS.gene017300.t1 AT5G20620 57.831 83 35 0 257 339 67 149 1.62e-21 93.6
MS.gene017300.t1 AT5G20620 57.831 83 35 0 257 339 143 225 1.62e-21 93.6
MS.gene017300.t1 AT5G20620 57.831 83 35 0 257 339 219 301 1.62e-21 93.6
MS.gene017300.t1 AT5G20620 63.014 73 27 0 267 339 1 73 3.08e-21 92.8
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 67 149 1.66e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 143 225 1.66e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 219 301 1.66e-21 93.6
MS.gene017300.t1 AT4G05320 63.014 73 27 0 267 339 1 73 3.07e-21 92.8
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 67 149 1.66e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 143 225 1.66e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 219 301 1.66e-21 93.6
MS.gene017300.t1 AT4G05320 63.014 73 27 0 267 339 1 73 3.07e-21 92.8
MS.gene017300.t1 AT4G02890 57.831 83 35 0 257 339 67 149 1.66e-21 93.6
MS.gene017300.t1 AT4G02890 57.831 83 35 0 257 339 143 225 1.66e-21 93.6
MS.gene017300.t1 AT4G02890 57.831 83 35 0 257 339 219 301 1.66e-21 93.6
MS.gene017300.t1 AT4G02890 63.014 73 27 0 267 339 1 73 3.07e-21 92.8
MS.gene017300.t1 AT4G02890 57.831 83 35 0 257 339 67 149 1.66e-21 93.6
MS.gene017300.t1 AT4G02890 57.831 83 35 0 257 339 143 225 1.66e-21 93.6
MS.gene017300.t1 AT4G02890 57.831 83 35 0 257 339 219 301 1.66e-21 93.6
MS.gene017300.t1 AT4G02890 63.014 73 27 0 267 339 1 73 3.07e-21 92.8
MS.gene017300.t1 AT1G65350 57.831 83 35 0 257 339 142 224 1.93e-21 93.6
MS.gene017300.t1 AT1G65350 63.014 73 27 0 267 339 1 73 3.92e-21 92.8
MS.gene017300.t1 AT1G65350 56.627 83 35 1 257 339 67 148 1.26e-18 85.5
MS.gene017300.t1 AT1G65350 46.392 97 38 1 257 339 218 314 8.48e-15 74.7
MS.gene017300.t1 AT1G55060 56.627 83 36 0 257 339 67 149 2.77e-21 91.3
MS.gene017300.t1 AT1G55060 55.422 83 37 0 257 339 143 225 1.14e-19 87.0
MS.gene017300.t1 AT1G55060 58.904 73 30 0 267 339 1 73 6.05e-19 84.7
MS.gene017300.t1 AT5G20620 57.831 83 35 0 257 339 67 149 3.90e-21 93.6
MS.gene017300.t1 AT5G20620 57.831 83 35 0 257 339 143 225 3.90e-21 93.6
MS.gene017300.t1 AT5G20620 57.831 83 35 0 257 339 219 301 3.90e-21 93.6
MS.gene017300.t1 AT5G20620 57.831 83 35 0 257 339 295 377 3.90e-21 93.6
MS.gene017300.t1 AT5G20620 63.014 73 27 0 267 339 1 73 7.12e-21 92.8
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 67 149 4.06e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 143 225 4.06e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 219 301 4.06e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 295 377 4.06e-21 93.6
MS.gene017300.t1 AT4G05320 63.014 73 27 0 267 339 1 73 7.34e-21 92.8
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 67 149 4.06e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 143 225 4.06e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 219 301 4.06e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 295 377 4.06e-21 93.6
MS.gene017300.t1 AT4G05320 63.014 73 27 0 267 339 1 73 7.34e-21 92.8
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 67 149 4.06e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 143 225 4.06e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 219 301 4.06e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 295 377 4.06e-21 93.6
MS.gene017300.t1 AT4G05320 63.014 73 27 0 267 339 1 73 7.34e-21 92.8
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 67 149 7.13e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 143 225 7.13e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 219 301 7.13e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 295 377 7.13e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 371 453 7.13e-21 93.6
MS.gene017300.t1 AT4G05320 63.014 73 27 0 267 339 1 73 1.24e-20 92.8
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 67 149 7.13e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 143 225 7.13e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 219 301 7.13e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 295 377 7.13e-21 93.6
MS.gene017300.t1 AT4G05320 57.831 83 35 0 257 339 371 453 7.13e-21 93.6
MS.gene017300.t1 AT4G05320 63.014 73 27 0 267 339 1 73 1.24e-20 92.8
MS.gene017300.t1 AT1G66610 25.177 282 142 8 34 247 54 334 3.24e-19 87.8
MS.gene017300.t1 AT3G09790 55.422 83 37 0 257 339 69 151 7.07e-19 88.2
MS.gene017300.t1 AT3G09790 54.795 73 33 0 267 339 3 75 1.12e-15 78.6
MS.gene017300.t1 AT3G09790 56.164 73 32 0 267 339 552 624 1.23e-14 75.5
MS.gene017300.t1 AT3G09790 49.315 73 37 0 267 339 393 465 3.11e-12 68.2
MS.gene017300.t1 AT3G09790 52.308 65 31 0 275 339 251 315 1.45e-11 65.9
MS.gene017300.t1 AT3G09790 55.422 83 37 0 257 339 69 151 7.07e-19 88.2
MS.gene017300.t1 AT3G09790 54.795 73 33 0 267 339 3 75 1.12e-15 78.6
MS.gene017300.t1 AT3G09790 56.164 73 32 0 267 339 552 624 1.23e-14 75.5
MS.gene017300.t1 AT3G09790 49.315 73 37 0 267 339 393 465 3.11e-12 68.2
MS.gene017300.t1 AT3G09790 52.308 65 31 0 275 339 251 315 1.45e-11 65.9
MS.gene017300.t1 AT2G41980 25.498 251 166 10 34 267 55 301 6.84e-17 80.5
MS.gene017300.t1 AT3G58040 25.301 249 171 9 34 268 58 305 8.67e-17 80.1
MS.gene017300.t1 AT3G58040 25.301 249 171 9 34 268 58 305 8.67e-17 80.1
MS.gene017300.t1 AT4G27880 26.230 244 163 7 34 261 62 304 1.58e-16 79.7
MS.gene017300.t1 AT1G53930 46.465 99 41 1 253 339 60 158 2.75e-16 75.9
MS.gene017300.t1 AT3G61790 26.230 244 163 7 34 261 61 303 3.05e-16 79.0
MS.gene017300.t1 AT3G58040 29.167 120 82 2 47 163 70 189 1.79e-14 72.0
MS.gene017300.t1 AT1G66660 27.586 203 130 6 80 274 25 218 3.94e-14 71.2
MS.gene017300.t1 AT1G53950 39.773 88 49 1 254 337 52 139 3.35e-13 66.6
MS.gene017300.t1 AT5G37900 28.571 175 109 5 84 247 50 219 4.81e-12 65.5
MS.gene017300.t1 AT1G66610 45.455 55 30 0 46 100 170 224 9.74e-11 61.6

Find 74 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATTCCATTTGGTTATTT+TGG 0.086917 5.1:-59185790 MS.gene017300:CDS
GTCAAGTATCCCGGTCTTTC+AGG 0.205662 5.1:-59187846 MS.gene017300:intron
CAATAATAGTACTATGCTTC+TGG 0.233524 5.1:-59185971 MS.gene017300:CDS
CTTCTCTTGGATGTTGTAAT+TGG 0.240266 5.1:+59185247 None:intergenic
ATGCAGCACTCGAAATCTTT+TGG 0.284202 5.1:+59187884 None:intergenic
CCATGTTACTGTCCCGTTAA+AGG 0.322107 5.1:-59186159 MS.gene017300:CDS
TTTCGTTTGGGCATGGCATT+TGG 0.327374 5.1:+59186250 None:intergenic
TTAGAGAGTCCCCGTGCTTA+TGG 0.337619 5.1:+59186091 None:intergenic
GTTTCAATTCAGTGTGATAA+TGG 0.337923 5.1:-59186384 MS.gene017300:intron
CGGTTATAGTTATGATATAT+TGG 0.355488 5.1:-59185902 MS.gene017300:CDS
AACAAAATCACAACCTTTAA+CGG 0.356146 5.1:+59186146 None:intergenic
TGACAGTTGTTCATAAGTTC+AGG 0.387326 5.1:+59186336 None:intergenic
GGTGGAGGGTTGCCTTCTCT+TGG 0.398143 5.1:+59185234 None:intergenic
CAATATATCATAACTATAAC+CGG 0.411820 5.1:+59185903 None:intergenic
TGAGGCGGAGGATGAGGTGG+AGG 0.418825 5.1:+59185219 None:intergenic
GTCAGAACTCTCCACCTTCA+AGG 0.425481 5.1:+59185376 None:intergenic
AAAGGAAATCTTCACTTTGA+CGG 0.433322 5.1:+59187907 None:intergenic
TGTTGTAATTGGCGAGGGTC+TGG 0.449822 5.1:+59185258 None:intergenic
AATAATAGTACTATGCTTCT+GGG 0.452747 5.1:-59185970 MS.gene017300:CDS
CCCCGTGCTTATGGTTGAAA+TGG 0.453443 5.1:+59186100 None:intergenic
GAGTTTCTCATGATTCCATT+TGG 0.455953 5.1:-59185799 MS.gene017300:CDS
ATCAGACGTTGTTGGTGCAC+TGG 0.461760 5.1:+59185308 None:intergenic
ACAAAATCACAACCTTTAAC+GGG 0.462017 5.1:+59186147 None:intergenic
GGACATTCTTCGGAGAAGAA+TGG 0.465579 5.1:+59185851 None:intergenic
GTAGACCGTTGGACATTCTT+CGG 0.472280 5.1:+59185841 None:intergenic
GTTCATAAGTTCAGGAAAGC+AGG 0.472993 5.1:+59186344 None:intergenic
TCTAGGTGAGGCGGAGGATG+AGG 0.489184 5.1:+59185213 None:intergenic
TCAGAACTCTCCACCTTCAA+GGG 0.491345 5.1:+59185377 None:intergenic
AGCACATGGTTGTGGAAAGA+TGG 0.493649 5.1:-59185402 MS.gene017300:CDS
AACGTCTGATGTTTGCCAAT+GGG 0.497147 5.1:-59185295 MS.gene017300:CDS
GTGCTTCAAGAGGAAAATGA+TGG 0.498172 5.1:-59186009 MS.gene017300:CDS
GAAGAACCAAAATAACCAAA+TGG 0.502893 5.1:+59185784 None:intergenic
GAGGCGGAGGATGAGGTGGA+GGG 0.516224 5.1:+59185220 None:intergenic
CAAACGCATACCTGAAAGAC+CGG 0.517732 5.1:+59187836 None:intergenic
TTGGATGTTGTAATTGGCGA+GGG 0.519187 5.1:+59185253 None:intergenic
ATATTCATAGCACATGGTTG+TGG 0.520000 5.1:-59185410 MS.gene017300:CDS
GATGTCAACTCTTCTGAAGC+CGG 0.525855 5.1:-59185922 MS.gene017300:CDS
ACCATTTCAACCATAAGCAC+GGG 0.528271 5.1:-59186101 MS.gene017300:CDS
TCAGACGTTGTTGGTGCACT+GGG 0.533496 5.1:+59185309 None:intergenic
GTGCTTATGGTTGAAATGGT+TGG 0.537800 5.1:+59186104 None:intergenic
CAGAACTCTCCACCTTCAAG+GGG 0.541421 5.1:+59185378 None:intergenic
CAACGTCTGATGTTTGCCAA+TGG 0.541988 5.1:-59185296 MS.gene017300:CDS
GAGAAGAATGGAACTTCAGA+CGG 0.544129 5.1:+59185863 None:intergenic
TCAACCATCGTCAAGTATCC+CGG 0.554240 5.1:-59187855 MS.gene017300:CDS
AGGTGAGGCGGAGGATGAGG+TGG 0.558067 5.1:+59185216 None:intergenic
CTTGGATGTTGTAATTGGCG+AGG 0.562146 5.1:+59185252 None:intergenic
TGGCAAACATCAGACGTTGT+TGG 0.565411 5.1:+59185300 None:intergenic
CAATAAGTCAAAGTGGAAAG+AGG 0.567412 5.1:-59186209 MS.gene017300:CDS
ATGCAAATTTCTAGCTCGAG+TGG 0.567969 5.1:+59185757 None:intergenic
AGAATTCAACGAGACAATGA+AGG 0.570430 5.1:+59186047 None:intergenic
AACCATTTCAACCATAAGCA+CGG 0.578863 5.1:-59186102 MS.gene017300:CDS
ATAGTTATGATATATTGGCT+AGG 0.585445 5.1:-59185897 MS.gene017300:CDS
CCTTTAACGGGACAGTAACA+TGG 0.593119 5.1:+59186159 None:intergenic
TGCTTCAAGAGGAAAATGAT+GGG 0.595045 5.1:-59186008 MS.gene017300:CDS
GCTGTCATCTAGTAGCCCAT+TGG 0.596080 5.1:+59185280 None:intergenic
GTTGGACAACACTTCTAATG+AGG 0.599282 5.1:+59186122 None:intergenic
TGAAGACATTGTGCTTCAAG+AGG 0.601484 5.1:-59186019 MS.gene017300:CDS
GTCTGATCTACTTCTAGGTG+AGG 0.614709 5.1:+59185201 None:intergenic
CAATTACAACATCCAAGAGA+AGG 0.616839 5.1:-59185246 MS.gene017300:CDS
AGAAGAATGGAACTTCAGAC+GGG 0.618410 5.1:+59185864 None:intergenic
TGATCTACTTCTAGGTGAGG+CGG 0.622766 5.1:+59185204 None:intergenic
AAGAATCTTATCCTTCACAT+TGG 0.625557 5.1:+59185346 None:intergenic
TCTACTTCTAGGTGAGGCGG+AGG 0.639167 5.1:+59185207 None:intergenic
GAGTTGCTGAAGTAGACCGT+TGG 0.646802 5.1:+59185830 None:intergenic
CTTCTCCGAAGAATGTCCAA+CGG 0.662024 5.1:-59185846 MS.gene017300:CDS
GAAGGATAAGATTCTTGACA+AGG 0.663625 5.1:-59185339 MS.gene017300:CDS
TGACACGATAGCCAATGTGA+AGG 0.670745 5.1:-59185357 MS.gene017300:CDS
ATGCAAATATTCATAGCACA+TGG 0.683285 5.1:-59185416 MS.gene017300:CDS
AGGGAGACAATAAGTCAAAG+TGG 0.684751 5.1:-59186216 MS.gene017300:CDS
AAACGCATACCTGAAAGACC+GGG 0.694830 5.1:+59187837 None:intergenic
CCATTTCAACCATAAGCACG+GGG 0.709635 5.1:-59186100 MS.gene017300:CDS
AGAACTCTCCACCTTCAAGG+GGG 0.732133 5.1:+59185379 None:intergenic
GAAGATAAGAGGTACCTTGG+GGG 0.747023 5.1:+59185732 None:intergenic
AAGACCGGGATACTTGACGA+TGG 0.768926 5.1:+59187851 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGACAATTAAAAAAAAT+GGG - chr5.1:59185737-59185756 MS.gene017300:intron 10.0%
!! TTATTGACAATTAAAAAAAA+TGG - chr5.1:59185736-59185755 MS.gene017300:intron 10.0%
!!! ATTTCTTGTTTTTTTTTTTT+GGG - chr5.1:59185450-59185469 MS.gene017300:intron 10.0%
!!! TATTTCTTGTTTTTTTTTTT+TGG - chr5.1:59185449-59185468 MS.gene017300:intron 10.0%
!! AATACTTATTTACTTTACAT+TGG - chr5.1:59186523-59186542 MS.gene017300:intron 15.0%
!! AATGTAAAGTAAATAAGTAT+TGG + chr5.1:59186524-59186543 None:intergenic 15.0%
!! ATACTTATTTACTTTACATT+GGG - chr5.1:59186524-59186543 MS.gene017300:intron 15.0%
!! TATAAAAGTTCAAAAATTGA+AGG + chr5.1:59186588-59186607 None:intergenic 15.0%
!!! TTCATTATTGATTTATTTGT+TGG - chr5.1:59187735-59187754 MS.gene017300:intron 15.0%
!!! TTTTATTTTATTCTACCTAA+TGG - chr5.1:59186750-59186769 MS.gene017300:intron 15.0%
!! AAGAAATAACCATAAATTGA+GGG + chr5.1:59185437-59185456 None:intergenic 20.0%
!! CAATATATCATAACTATAAC+CGG + chr5.1:59187288-59187307 None:intergenic 20.0%
!! CATAATTGTAAGACTATAAT+TGG + chr5.1:59187507-59187526 None:intergenic 20.0%
!! GTATGAACTAAATGAAATTT+GGG - chr5.1:59186217-59186236 MS.gene017300:CDS 20.0%
!! GTCAAAAAGTTGTTAAAAAT+TGG - chr5.1:59185688-59185707 MS.gene017300:intron 20.0%
!! TCATTAACCAAGAAAAATTA+AGG - chr5.1:59186263-59186282 MS.gene017300:CDS 20.0%
!! TGTATGAACTAAATGAAATT+TGG - chr5.1:59186216-59186235 MS.gene017300:CDS 20.0%
!!! AAAAAGTGTGATTTTTTGTA+GGG + chr5.1:59185978-59185997 None:intergenic 20.0%
!!! TAAAAAGTGTGATTTTTTGT+AGG + chr5.1:59185979-59185998 None:intergenic 20.0%
!!! TCTCTAATTGAATTTTCTTA+TGG - chr5.1:59187113-59187132 MS.gene017300:intron 20.0%
! AAACAACGAAAGTAATGAAA+AGG + chr5.1:59187483-59187502 None:intergenic 25.0%
! AAAGAAATCAAAAACACCTT+GGG + chr5.1:59187707-59187726 None:intergenic 25.0%
! AAATAAGAGATTTCTTTGCT+AGG + chr5.1:59186733-59186752 None:intergenic 25.0%
! AAATTAGACTTTGAACCATT+AGG + chr5.1:59186768-59186787 None:intergenic 25.0%
! AACAAAATCACAACCTTTAA+CGG + chr5.1:59187045-59187064 None:intergenic 25.0%
! AATAATAGTACTATGCTTCT+GGG - chr5.1:59187218-59187237 MS.gene017300:intron 25.0%
! AATGCTAAAAAGAATGTTAG+AGG - chr5.1:59186039-59186058 MS.gene017300:CDS 25.0%
! ACTGATCCAAAATTGAAAAA+CGG + chr5.1:59187605-59187624 None:intergenic 25.0%
! ATGCTAAAAAGAATGTTAGA+GGG - chr5.1:59186040-59186059 MS.gene017300:CDS 25.0%
! CAAGAAATAACCATAAATTG+AGG + chr5.1:59185438-59185457 None:intergenic 25.0%
! CGGTTATAGTTATGATATAT+TGG - chr5.1:59187286-59187305 MS.gene017300:intron 25.0%
! TAACCAAGAAAAATTAAGGA+TGG - chr5.1:59186267-59186286 MS.gene017300:CDS 25.0%
! TACAATATGAACTTCTTGTA+TGG - chr5.1:59186612-59186631 MS.gene017300:intron 25.0%
! TCATTGAAGTTGTTTACAAA+AGG + chr5.1:59185568-59185587 None:intergenic 25.0%
! TCTCAAATTATTAGCAGTAT+CGG + chr5.1:59185861-59185880 None:intergenic 25.0%
!! AAAACACTAACAATCCTTTT+TGG + chr5.1:59187582-59187601 None:intergenic 25.0%
!! ATAGTTATGATATATTGGCT+AGG - chr5.1:59187291-59187310 MS.gene017300:intron 25.0%
!! ATGATTCCATTTGGTTATTT+TGG - chr5.1:59187398-59187417 MS.gene017300:intron 25.0%
!! TATCCATCCTTAATTTTTCT+TGG + chr5.1:59186273-59186292 None:intergenic 25.0%
!!! AATTTCGTTTTTAGTTCCTA+TGG - chr5.1:59185793-59185812 MS.gene017300:CDS 25.0%
!!! ATGCGTTTGATATTTTTTAG+TGG - chr5.1:59185366-59185385 MS.gene017300:CDS 25.0%
!!! CTGATATTTTAAGAAACTTG+TGG + chr5.1:59186308-59186327 None:intergenic 25.0%
!!! GACAATGATTAGTTTTATGT+TGG - chr5.1:59186675-59186694 MS.gene017300:intron 25.0%
!!! TGTTTTCCGTTTTTCAATTT+TGG - chr5.1:59187596-59187615 MS.gene017300:intron 25.0%
AAAGGAAATCTTCACTTTGA+CGG + chr5.1:59185284-59185303 None:intergenic 30.0%
AAAGTCTATGTCAAAGTTCA+GGG + chr5.1:59186641-59186660 None:intergenic 30.0%
AACTCTTCGTATATTCACAT+TGG + chr5.1:59186126-59186145 None:intergenic 30.0%
AAGAATCTTATCCTTCACAT+TGG + chr5.1:59187845-59187864 None:intergenic 30.0%
AATGAAAAGGAGAAGATAAG+AGG + chr5.1:59187470-59187489 None:intergenic 30.0%
ACAAAATCACAACCTTTAAC+GGG + chr5.1:59187044-59187063 None:intergenic 30.0%
ACTCTTCGTATATTCACATT+GGG + chr5.1:59186125-59186144 None:intergenic 30.0%
ATGCAAATATTCATAGCACA+TGG - chr5.1:59187772-59187791 MS.gene017300:intron 30.0%
ATGTGAATATACGAAGAGTT+TGG - chr5.1:59186126-59186145 MS.gene017300:CDS 30.0%
CAATAATAGTACTATGCTTC+TGG - chr5.1:59187217-59187236 MS.gene017300:intron 30.0%
GAAAGAAATCAAAAACACCT+TGG + chr5.1:59187708-59187727 None:intergenic 30.0%
GAAGAACCAAAATAACCAAA+TGG + chr5.1:59187407-59187426 None:intergenic 30.0%
GGAGATAGTGATTATGTTTA+AGG - chr5.1:59186449-59186468 MS.gene017300:intron 30.0%
GTTTCAATTCAGTGTGATAA+TGG - chr5.1:59186804-59186823 MS.gene017300:intron 30.0%
TAAAGTCTATGTCAAAGTTC+AGG + chr5.1:59186642-59186661 None:intergenic 30.0%
TGCCTATAAAGTGAATTACT+CGG + chr5.1:59185512-59185531 None:intergenic 30.0%
TTCTTGGTTAATGAAGCAAA+GGG + chr5.1:59186257-59186276 None:intergenic 30.0%
TTTCTTGGTTAATGAAGCAA+AGG + chr5.1:59186258-59186277 None:intergenic 30.0%
! CCATAAATTGAGGGTATATT+CGG + chr5.1:59185428-59185447 None:intergenic 30.0%
! CTTTGTCTTTTTCTCTCTAT+TGG + chr5.1:59185629-59185648 None:intergenic 30.0%
!! CAGTTTTTCAAATGCCAAAA+AGG - chr5.1:59187565-59187584 MS.gene017300:intron 30.0%
!! GACTCTTCTAAAGTGAATAA+AGG + chr5.1:59186353-59186372 None:intergenic 30.0%
!! TAAATAAGTATTGGTCTCCA+AGG + chr5.1:59186515-59186534 None:intergenic 30.0%
!! TTAGTGTGTGTTTGTTTTCA+CGG + chr5.1:59186178-59186197 None:intergenic 30.0%
!!! AGGTGTTTTTGATTTCTTTC+TGG - chr5.1:59187708-59187727 MS.gene017300:intron 30.0%
!!! CGGTGTCATTCAATATTTTA+GGG + chr5.1:59185492-59185511 None:intergenic 30.0%
!!! TCGGTGTCATTCAATATTTT+AGG + chr5.1:59185493-59185512 None:intergenic 30.0%
!!! TGTTTTTGATTTCTTTCTGG+CGG - chr5.1:59187711-59187730 MS.gene017300:intron 30.0%
AAACGAAAAATATGGCTGCA+GGG - chr5.1:59186953-59186972 MS.gene017300:intron 35.0%
AACCATTTCAACCATAAGCA+CGG - chr5.1:59187086-59187105 MS.gene017300:intron 35.0%
AGAATTCAACGAGACAATGA+AGG + chr5.1:59187144-59187163 None:intergenic 35.0%
AGTTTGGAAAAACATGCGTT+TGG - chr5.1:59186142-59186161 MS.gene017300:CDS 35.0%
ATATTCATAGCACATGGTTG+TGG - chr5.1:59187778-59187797 MS.gene017300:intron 35.0%
CAATAAGTCAAAGTGGAAAG+AGG - chr5.1:59186979-59186998 MS.gene017300:intron 35.0%
CAATTACAACATCCAAGAGA+AGG - chr5.1:59187942-59187961 MS.gene017300:CDS 35.0%
CACCGAGTAATTCACTTTAT+AGG - chr5.1:59185507-59185526 MS.gene017300:intron 35.0%
CCGAATATACCCTCAATTTA+TGG - chr5.1:59185425-59185444 MS.gene017300:intron 35.0%
CTTCTCTTGGATGTTGTAAT+TGG + chr5.1:59187944-59187963 None:intergenic 35.0%
GAAGGATAAGATTCTTGACA+AGG - chr5.1:59187849-59187868 MS.gene017300:CDS 35.0%
GAGTTTCTCATGATTCCATT+TGG - chr5.1:59187389-59187408 MS.gene017300:intron 35.0%
GTAATTCACTTTATAGGCAG+AGG - chr5.1:59185513-59185532 MS.gene017300:intron 35.0%
TGACAGTTGTTCATAAGTTC+AGG + chr5.1:59186855-59186874 None:intergenic 35.0%
TGCTTCAAGAGGAAAATGAT+GGG - chr5.1:59187180-59187199 MS.gene017300:intron 35.0%
TGTAGACAGCAGAAAAGAAT+GGG - chr5.1:59186427-59186446 MS.gene017300:intron 35.0%
TTGTAGACAGCAGAAAAGAA+TGG - chr5.1:59186426-59186445 MS.gene017300:intron 35.0%
! AAAGGTACATAAGACAAGGA+GGG + chr5.1:59186408-59186427 None:intergenic 35.0%
! CTACAAAGGTACATAAGACA+AGG + chr5.1:59186412-59186431 None:intergenic 35.0%
! TGCAGCCATATTTTTCGTTT+GGG + chr5.1:59186953-59186972 None:intergenic 35.0%
! TTCTTTTCTGCTGTCTACAA+AGG + chr5.1:59186426-59186445 None:intergenic 35.0%
AACGTCTGATGTTTGCCAAT+GGG - chr5.1:59187893-59187912 MS.gene017300:CDS 40.0%
ACCATTTCAACCATAAGCAC+GGG - chr5.1:59187087-59187106 MS.gene017300:intron 40.0%
AGAAATTTGCATAACCCCCA+AGG - chr5.1:59187442-59187461 MS.gene017300:intron 40.0%
AGAAGAATGGAACTTCAGAC+GGG + chr5.1:59187327-59187346 None:intergenic 40.0%
AGAGGGACTAAGCATATGTT+TGG - chr5.1:59186057-59186076 MS.gene017300:CDS 40.0%
AGGGAGACAATAAGTCAAAG+TGG - chr5.1:59186972-59186991 MS.gene017300:intron 40.0%
CAAACGAAAAATATGGCTGC+AGG - chr5.1:59186952-59186971 MS.gene017300:intron 40.0%
CACATACATCAGACACAACA+CGG - chr5.1:59185824-59185843 MS.gene017300:CDS 40.0%
CCATGCCCAAACGAAAAATA+TGG - chr5.1:59186945-59186964 MS.gene017300:intron 40.0%
CGCTGATGTGTTGTAATGAA+GGG - chr5.1:59187681-59187700 MS.gene017300:intron 40.0%
GAGAAGAATGGAACTTCAGA+CGG + chr5.1:59187328-59187347 None:intergenic 40.0%
GTAGACAGCAGAAAAGAATG+GGG - chr5.1:59186428-59186447 MS.gene017300:intron 40.0%
GTGCTTATGGTTGAAATGGT+TGG + chr5.1:59187087-59187106 None:intergenic 40.0%
GTGCTTCAAGAGGAAAATGA+TGG - chr5.1:59187179-59187198 MS.gene017300:intron 40.0%
GTTCATAAGTTCAGGAAAGC+AGG + chr5.1:59186847-59186866 None:intergenic 40.0%
GTTGGACAACACTTCTAATG+AGG + chr5.1:59187069-59187088 None:intergenic 40.0%
TGAAGACATTGTGCTTCAAG+AGG - chr5.1:59187169-59187188 MS.gene017300:intron 40.0%
TGGAAAAACATGCGTTTGGT+GGG - chr5.1:59186146-59186165 MS.gene017300:CDS 40.0%
TGTATGTGTATTCGTGCCAT+AGG + chr5.1:59185812-59185831 None:intergenic 40.0%
TTGGAAAAACATGCGTTTGG+TGG - chr5.1:59186145-59186164 MS.gene017300:CDS 40.0%
TTGGATGTTGTAATTGGCGA+GGG + chr5.1:59187938-59187957 None:intergenic 40.0%
TTGTAGGGACCTATGAAACA+CGG + chr5.1:59185963-59185982 None:intergenic 40.0%
! ATGCAGCACTCGAAATCTTT+TGG + chr5.1:59185307-59185326 None:intergenic 40.0%
! CAAAGGTACATAAGACAAGG+AGG + chr5.1:59186409-59186428 None:intergenic 40.0%
! CCATATTTTTCGTTTGGGCA+TGG + chr5.1:59186948-59186967 None:intergenic 40.0%
! CTGCAGCCATATTTTTCGTT+TGG + chr5.1:59186954-59186973 None:intergenic 40.0%
! GATTTATTTGTTGGCGACTG+CGG - chr5.1:59187744-59187763 MS.gene017300:intron 40.0%
!! AGAAGATAAGAGGTACCTTG+GGG + chr5.1:59187460-59187479 None:intergenic 40.0%
!! ATGCAAATTTCTAGCTCGAG+TGG + chr5.1:59187434-59187453 None:intergenic 40.0%
!! GAGAAGATAAGAGGTACCTT+GGG + chr5.1:59187461-59187480 None:intergenic 40.0%
!! GCACTCGAAATCTTTTGGAA+AGG + chr5.1:59185302-59185321 None:intergenic 40.0%
!! TTGCAACGTTTTGAGCTAAC+AGG + chr5.1:59186891-59186910 None:intergenic 40.0%
AAACGCATACCTGAAAGACC+GGG + chr5.1:59185354-59185373 None:intergenic 45.0%
AGCACATGGTTGTGGAAAGA+TGG - chr5.1:59187786-59187805 MS.gene017300:intron 45.0%
CAAACGCATACCTGAAAGAC+CGG + chr5.1:59185355-59185374 None:intergenic 45.0%
CAACGTCTGATGTTTGCCAA+TGG - chr5.1:59187892-59187911 MS.gene017300:CDS 45.0%
CCATGTTACTGTCCCGTTAA+AGG - chr5.1:59187029-59187048 MS.gene017300:intron 45.0%
CCATTTCAACCATAAGCACG+GGG - chr5.1:59187088-59187107 MS.gene017300:intron 45.0%
CCTTTAACGGGACAGTAACA+TGG + chr5.1:59187032-59187051 None:intergenic 45.0%
CTTCTCCGAAGAATGTCCAA+CGG - chr5.1:59187342-59187361 MS.gene017300:intron 45.0%
CTTGGATGTTGTAATTGGCG+AGG + chr5.1:59187939-59187958 None:intergenic 45.0%
GATTAGACGTGTCCTGGTAT+CGG + chr5.1:59185930-59185949 None:intergenic 45.0%
GGACATTCTTCGGAGAAGAA+TGG + chr5.1:59187340-59187359 None:intergenic 45.0%
GTAGACCGTTGGACATTCTT+CGG + chr5.1:59187350-59187369 None:intergenic 45.0%
GTATTAGTATCGCCGATACC+AGG - chr5.1:59185915-59185934 MS.gene017300:CDS 45.0%
TATGAAACACGGACACTCCT+TGG + chr5.1:59185952-59185971 None:intergenic 45.0%
TCAACCATCGTCAAGTATCC+CGG - chr5.1:59185333-59185352 MS.gene017300:CDS 45.0%
TCAGAACTCTCCACCTTCAA+GGG + chr5.1:59187814-59187833 None:intergenic 45.0%
TCTCGGGACGCGAAATTAAA+AGG + chr5.1:59186096-59186115 None:intergenic 45.0%
TGACACGATAGCCAATGTGA+AGG - chr5.1:59187831-59187850 MS.gene017300:intron 45.0%
TGGCAAACATCAGACGTTGT+TGG + chr5.1:59187891-59187910 None:intergenic 45.0%
TTTAGTGGCGAAACTCGAGT+GGG - chr5.1:59185381-59185400 MS.gene017300:CDS 45.0%
TTTCGTTTGGGCATGGCATT+TGG + chr5.1:59186941-59186960 None:intergenic 45.0%
! GCGCTGATGTGTTGTAATGA+AGG - chr5.1:59187680-59187699 MS.gene017300:intron 45.0%
! GCTTTTAGATGAGCAAGCCT+TGG - chr5.1:59186495-59186514 MS.gene017300:intron 45.0%
! TTTTAGTGGCGAAACTCGAG+TGG - chr5.1:59185380-59185399 MS.gene017300:CDS 45.0%
!! AAGGAGTGTCCGTGTTTCAT+AGG - chr5.1:59185951-59185970 MS.gene017300:CDS 45.0%
!! GAAGATAAGAGGTACCTTGG+GGG + chr5.1:59187459-59187478 None:intergenic 45.0%
!! GATGTCAACTCTTCTGAAGC+CGG - chr5.1:59187266-59187285 MS.gene017300:intron 45.0%
!! GGAGAAGATAAGAGGTACCT+TGG + chr5.1:59187462-59187481 None:intergenic 45.0%
!! GTGTGTGTTTGTTTTCACGG+TGG + chr5.1:59186175-59186194 None:intergenic 45.0%
!!! TTTTAATTTCGCGTCCCGAG+AGG - chr5.1:59186095-59186114 MS.gene017300:CDS 45.0%
!!! TTTTTTTTTTTTATTTTGAT+TGG - chr5.1:59185597-59185616 MS.gene017300:intron 5.0%
AAGACCGGGATACTTGACGA+TGG + chr5.1:59185340-59185359 None:intergenic 50.0%
ACCAGGACACGTCTAATCCA+AGG - chr5.1:59185932-59185951 MS.gene017300:CDS 50.0%
AGAACTCTCCACCTTCAAGG+GGG + chr5.1:59187812-59187831 None:intergenic 50.0%
ATCAGACGTTGTTGGTGCAC+TGG + chr5.1:59187883-59187902 None:intergenic 50.0%
CAGAACTCTCCACCTTCAAG+GGG + chr5.1:59187813-59187832 None:intergenic 50.0%
CCCCGTGCTTATGGTTGAAA+TGG + chr5.1:59187091-59187110 None:intergenic 50.0%
GAGTTGCTGAAGTAGACCGT+TGG + chr5.1:59187361-59187380 None:intergenic 50.0%
GCTGTCATCTAGTAGCCCAT+TGG + chr5.1:59187911-59187930 None:intergenic 50.0%
GTCAAGTATCCCGGTCTTTC+AGG - chr5.1:59185342-59185361 MS.gene017300:CDS 50.0%
GTCAGAACTCTCCACCTTCA+AGG + chr5.1:59187815-59187834 None:intergenic 50.0%
GTGTTGTAATGAAGGGCCCA+AGG - chr5.1:59187688-59187707 MS.gene017300:intron 50.0%
TCAGACGTTGTTGGTGCACT+GGG + chr5.1:59187882-59187901 None:intergenic 50.0%
TGTTGTAATTGGCGAGGGTC+TGG + chr5.1:59187933-59187952 None:intergenic 50.0%
TTAGAGAGTCCCCGTGCTTA+TGG + chr5.1:59187100-59187119 None:intergenic 50.0%
TTCACATTGGGACAGCCTCT+CGG + chr5.1:59186113-59186132 None:intergenic 50.0%
! TCCTTGGATTAGACGTGTCC+TGG + chr5.1:59185936-59185955 None:intergenic 50.0%
AAAGATGGCCCCCTTGAAGG+TGG - chr5.1:59187801-59187820 MS.gene017300:intron 55.0%
TCACATTGGGACAGCCTCTC+GGG + chr5.1:59186112-59186131 None:intergenic 55.0%
TGGAAAGATGGCCCCCTTGA+AGG - chr5.1:59187798-59187817 MS.gene017300:intron 55.0%
GGTGGAGGGTTGCCTTCTCT+TGG + chr5.1:59187957-59187976 None:intergenic 60.0%
AGGTGAGGCGGAGGATGAGG+TGG + chr5.1:59187975-59187994 None:intergenic 65.0%
GAGGCGGAGGATGAGGTGGA+GGG + chr5.1:59187971-59187990 None:intergenic 65.0%
TGAGGCGGAGGATGAGGTGG+AGG + chr5.1:59187972-59187991 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 59185214 59187996 59185214 ID=MS.gene017300
chr5.1 mRNA 59185214 59187996 59185214 ID=MS.gene017300.t1;Parent=MS.gene017300
chr5.1 exon 59187847 59187996 59187847 ID=MS.gene017300.t1.exon1;Parent=MS.gene017300.t1
chr5.1 CDS 59187847 59187996 59187847 ID=cds.MS.gene017300.t1;Parent=MS.gene017300.t1
chr5.1 exon 59185747 59186394 59185747 ID=MS.gene017300.t1.exon2;Parent=MS.gene017300.t1
chr5.1 CDS 59185747 59186394 59185747 ID=cds.MS.gene017300.t1;Parent=MS.gene017300.t1
chr5.1 exon 59185214 59185438 59185214 ID=MS.gene017300.t1.exon3;Parent=MS.gene017300.t1
chr5.1 CDS 59185214 59185438 59185214 ID=cds.MS.gene017300.t1;Parent=MS.gene017300.t1
Gene Sequence

>MS.gene017300

ATGGAGACATGCAACAAAGAAAACGAAGAGATCGTTGATTCAGCAGAAGATGTTAGTAAGAATAGTTCCGTCAAAGTGAAGATTTCCTTTCCAAAAGATTTCGAGTGCTGCATTTGTCTTCAACCATCGTCAAGTATCCCGGTCTTTCAGGTATGCGTTTGATATTTTTTAGTGGCGAAACTCGAGTGGGAAATGAAGCTCGAATGAAAATCCGAATATACCCTCAATTTATGGTTATTTCTTGTTTTTTTTTTTTGGGCTTTTTTGTTATTTCACCCTAAAATATTGAATGACACCGAGTAATTCACTTTATAGGCAGAGGTAAATATTATGAGTAGTGATATTTGTACACCTTTTGTAAACAACTTCAATGACAACTTTGTTTTTTTTTTTTTATTTTGATTGGTCAAAACCAATAGAGAGAAAAAGACAAAGAGAGAATAAGAATATAATCTGAGTATAAGAGAGAAAGTTGTCAAAAAGTTGTTAAAAATTGGTTGTATAAATATCATTTCTCAAATATTATTGACAATTAAAAAAAATGGGATAGTTACGTAAATGATCACTATAAATATTCAGAATTTCGTTTTTAGTTCCTATGGCACGAATACACATACATCAGACACAACACGGACACTAACACACCGATACTGCTAATAATTTGAGAAAATCACATAATTCAGTGTAATTGTGTCAGTGTTGTATTAGTATCGCCGATACCAGGACACGTCTAATCCAAGGAGTGTCCGTGTTTCATAGGTCCCTACAAAAAATCACACTTTTTAGTCTTGTAAAAATTTTCGTCAACATTTATATTGCTTTAAAAATGCTAAAAAGAATGTTAGAGGGACTAAGCATATGTTTGGATACAGCGTTGTGCCTTTTAATTTCGCGTCCCGAGAGGCTGTCCCAATGTGAATATACGAAGAGTTTGGAAAAACATGCGTTTGGTGGGTATCCACCGTGAAAACAAACACACACTAAAAAGTTATGATTTTTTTTTGTATGAACTAAATGAAATTTGGGATATTTAATAGAGACCCTTTGCTTCATTAACCAAGAAAAATTAAGGATGGATAACATTATAACAACCACAAGTTTCTTAAAATATCAGTCACTTGATTTTCTCACTTTATCCTTTATTCACTTTAGAAGAGTCAAATTCAGTCAAAAATAATACTACATTGTTCACCCTCCTTGTCTTATGTACCTTTGTAGACAGCAGAAAAGAATGGGGAGATAGTGATTATGTTTAAGGAATCAATTTTGTTTATTTTAAATGCTTTTAGATGAGCAAGCCTTGGAGACCAATACTTATTTACTTTACATTGGGTTTGAATATTAATTATGAATGTCTTTAATTTTGTATAACCTTCAATTTTTGAACTTTTATATGTGTACAATATGAACTTCTTGTATGGTTTCCCTGAACTTTGACATAGACTTTAAGAAGAAAAATTTGACAATGATTAGTTTTATGTTGGTTATACTTTTGATTGCAAAACATGCTAACAAACCTAGCAAAGAAATCTCTTATTTTATTTTATTCTACCTAATGGTTCAAAGTCTAATTTGATGACTGTCTTTTATGTTTCAATTCAGTGTGATAATGGTCATATTGTTTGCTCTACCTGCTTTCCTGAACTTATGAACAACTGTCACAAGTGCTCATTGCCTGTTAGCTCAAAACGTTGCAAAGTCATTGAGAATATATCGCAGTCTATCCAAATGCCATGCCCAAACGAAAAATATGGCTGCAGGGAGACAATAAGTCAAAGTGGAAAGAGGAAACATGAAGAAGAATGCATCTATGTGCCATGTTACTGTCCCGTTAAAGGTTGTGATTTTGTTGCCTCATTAGAAGTGTTGTCCAACCATTTCAACCATAAGCACGGGGACTCTCTAATTGAATTTTCTTATGGTCACTCCTTCATTGTCTCGTTGAATTCTAATGATGAAGACATTGTGCTTCAAGAGGAAAATGATGGGAAACTATTTACTCTCAATAATAGTACTATGCTTCTGGGAAATGCAGTCAATATTAGCTGCATTGATGTCAACTCTTCTGAAGCCGGTTATAGTTATGATATATTGGCTAGGTCTAAGATATCCCGTCTGAAGTTCCATTCTTCTCCGAAGAATGTCCAACGGTCTACTTCAGCAACTCTTTCATCAGAGTTTCTCATGATTCCATTTGGTTATTTTGGTTCTTCTAAACCACTCGAGCTAGAAATTTGCATAACCCCCAAGGTACCTCTTATCTTCTCCTTTTCATTACTTTCGTTGTTTTCCAATTATAGTCTTACAATTATGTTTCGAATATATACTCTAGCATTTTATCTCAAATTCATCAGTTTTTCAAATGCCAAAAAGGATTGTTAGTGTTTTCCGTTTTTCAATTTTGGATCAGTTCTTGAAATATCAAAATTAAATTTTCTTTTATTCATTTGATCATGAAATTTGTTTGCGCTGATGTGTTGTAATGAAGGGCCCAAGGTGTTTTTGATTTCTTTCTGGCGGTTTCATTATTGATTTATTTGTTGGCGACTGCGGTGCAGATGCAAATATTCATAGCACATGGTTGTGGAAAGATGGCCCCCTTGAAGGTGGAGAGTTCTGACACGATAGCCAATGTGAAGGATAAGATTCTTGACAAGGAAACGATCCCAGTGCACCAACAACGTCTGATGTTTGCCAATGGGCTACTAGATGACAGCCAGACCCTCGCCAATTACAACATCCAAGAGAAGGCAACCCTCCACCTCATCCTCCGCCTCACCTAG

Protein sequence

>MS.gene017300.t1

METCNKENEEIVDSAEDVSKNSSVKVKISFPKDFECCICLQPSSSIPVFQCDNGHIVCSTCFPELMNNCHKCSLPVSSKRCKVIENISQSIQMPCPNEKYGCRETISQSGKRKHEEECIYVPCYCPVKGCDFVASLEVLSNHFNHKHGDSLIEFSYGHSFIVSLNSNDEDIVLQEENDGKLFTLNNSTMLLGNAVNISCIDVNSSEAGYSYDILARSKISRLKFHSSPKNVQRSTSATLSSEFLMIPFGYFGSSKPLELEICITPKMQIFIAHGCGKMAPLKVESSDTIANVKDKILDKETIPVHQQRLMFANGLLDDSQTLANYNIQEKATLHLILRLT