AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53616


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53616.t1 MTR_1g046640 80.380 316 61 1 1 316 1 315 0.0 505
MS.gene53616.t1 MTR_1g046650 78.481 316 67 1 1 316 32 346 1.56e-176 492
MS.gene53616.t1 MTR_1g046650 78.481 316 67 1 1 316 1 315 2.08e-176 490
MS.gene53616.t1 MTR_5g067400 77.636 313 68 2 1 312 1 312 7.62e-173 481
MS.gene53616.t1 MTR_1g046650 78.007 291 63 1 26 316 26 315 1.48e-159 448
MS.gene53616.t1 MTR_7g024290 71.656 314 86 3 1 312 1 313 3.56e-156 439
MS.gene53616.t1 MTR_5g076660 67.208 308 96 3 4 307 26 332 9.77e-138 394
MS.gene53616.t1 MTR_5g076720 64.557 316 107 3 3 314 74 388 3.61e-137 394
MS.gene53616.t1 MTR_5g076520 65.015 323 105 5 1 316 1 322 6.71e-137 390
MS.gene53616.t1 MTR_5g076370 64.968 314 104 4 4 312 26 338 5.14e-135 387
MS.gene53616.t1 MTR_5g076810 74.812 266 64 3 49 312 2 266 8.25e-134 381
MS.gene53616.t1 MTR_7g094390 64.379 306 107 2 3 307 164 468 9.47e-132 383
MS.gene53616.t1 MTR_2g038430 59.816 326 118 3 4 316 18 343 6.08e-131 376
MS.gene53616.t1 MTR_1g046650 76.113 247 58 1 70 316 1 246 9.43e-131 372
MS.gene53616.t1 MTR_2g038420 60.377 318 121 3 4 316 18 335 8.64e-130 373
MS.gene53616.t1 MTR_5g061290 59.688 320 119 5 4 316 11 327 1.38e-126 365
MS.gene53616.t1 MTR_5g076820 68.100 279 81 6 1 274 10 285 4.55e-120 347
MS.gene53616.t1 MTR_5g076505 63.103 290 102 3 27 312 23 311 4.55e-119 345
MS.gene53616.t1 MTR_5g076540 72.052 229 62 2 1 228 1 228 1.01e-108 316
MS.gene53616.t1 MTR_5g077020 65.482 197 53 6 53 239 17 208 1.30e-74 229
MS.gene53616.t1 MTR_4g094468 48.101 237 116 5 5 237 91 324 3.19e-64 206
MS.gene53616.t1 MTR_4g058025 69.767 129 36 3 68 194 1 128 6.88e-50 164
MS.gene53616.t1 MTR_7g085590 28.846 208 131 5 6 208 58 253 6.89e-23 96.7
MS.gene53616.t1 MTR_3g091510 29.167 216 129 7 11 209 60 268 2.93e-18 84.3
MS.gene53616.t1 MTR_7g117415 27.650 217 147 5 3 209 53 269 5.16e-18 83.6
MS.gene53616.t1 MTR_8g027520 28.571 217 145 5 3 209 36 252 6.64e-18 82.8
MS.gene53616.t1 MTR_8g027520 28.571 217 145 5 3 209 45 261 6.94e-18 83.2
MS.gene53616.t1 MTR_1g008120 27.778 216 132 7 11 209 68 276 5.57e-17 80.5
MS.gene53616.t1 MTR_5g092700 55.556 72 32 0 241 312 1 72 8.36e-17 76.6
MS.gene53616.t1 MTR_4g073580 55.556 72 32 0 241 312 1 72 8.36e-17 76.6
MS.gene53616.t1 MTR_7g105080 55.556 72 32 0 241 312 1 72 1.39e-16 75.1
MS.gene53616.t1 MTR_3g092130 55.556 72 32 0 241 312 1 72 1.39e-16 75.1
MS.gene53616.t1 MTR_1g059690 55.556 72 32 0 241 312 1 72 1.39e-16 75.1
MS.gene53616.t1 MTR_4g073580 55.556 72 32 0 241 312 1 72 2.13e-16 76.3
MS.gene53616.t1 MTR_8g088060 55.556 72 32 0 241 312 1 72 3.53e-16 75.1
MS.gene53616.t1 MTR_3g092130 55.556 72 32 0 241 312 1 72 3.57e-16 74.3
MS.gene53616.t1 MTR_7g116360 56.164 73 32 0 240 312 48 120 3.81e-16 77.4
MS.gene53616.t1 MTR_7g116360 55.556 72 32 0 241 312 125 196 1.46e-15 75.9
MS.gene53616.t1 MTR_7g116360 55.556 72 32 0 241 312 201 272 1.46e-15 75.9
MS.gene53616.t1 MTR_5g033960 55.556 72 32 0 241 312 1 72 3.83e-16 74.7
MS.gene53616.t1 MTR_4g088485 55.556 72 32 0 241 312 1 72 4.01e-16 76.3
MS.gene53616.t1 MTR_4g088485 55.556 72 32 0 241 312 138 209 4.01e-16 76.3
MS.gene53616.t1 MTR_1g066390 55.556 72 32 0 241 312 1 72 4.37e-16 76.6
MS.gene53616.t1 MTR_1g066390 55.556 72 32 0 241 312 77 148 4.37e-16 76.6
MS.gene53616.t1 MTR_1g066390 55.556 72 32 0 241 312 153 224 4.37e-16 76.6
MS.gene53616.t1 MTR_7g116360 55.556 72 32 0 241 312 1 72 4.75e-16 76.3
MS.gene53616.t1 MTR_7g116360 55.556 72 32 0 241 312 77 148 4.75e-16 76.3
MS.gene53616.t1 MTR_7g116360 55.556 72 32 0 241 312 153 224 4.75e-16 76.3
MS.gene53616.t1 MTR_5g076760 63.158 57 21 0 251 307 5 61 5.54e-16 72.4
MS.gene53616.t1 MTR_1g054335 25.703 249 166 8 11 241 58 305 6.92e-16 77.0
MS.gene53616.t1 MTR_8g038370 26.728 217 135 7 11 210 112 321 7.70e-16 77.8
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 1 72 8.63e-16 76.3
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 77 148 8.63e-16 76.3
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 153 224 8.63e-16 76.3
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 1 72 1.26e-15 76.3
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 77 148 1.26e-15 76.3
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 153 224 1.26e-15 76.3
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 229 300 1.26e-15 76.3
MS.gene53616.t1 MTR_6g061930 55.556 72 32 0 241 312 1 72 1.26e-15 76.3
MS.gene53616.t1 MTR_6g061930 55.556 72 32 0 241 312 77 148 1.26e-15 76.3
MS.gene53616.t1 MTR_6g061930 55.556 72 32 0 241 312 214 285 1.26e-15 76.3
MS.gene53616.t1 MTR_7g093600 26.794 209 143 6 11 209 59 267 1.27e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 1 72 1.70e-15 75.5
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 77 148 1.70e-15 75.5
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 153 224 1.70e-15 75.5
MS.gene53616.t1 MTR_4g080920 54.167 72 33 0 241 312 77 148 1.71e-15 74.7
MS.gene53616.t1 MTR_4g080920 54.167 72 33 0 241 312 1 72 3.43e-15 73.9
MS.gene53616.t1 MTR_8g081020 55.556 72 32 0 241 312 1 72 1.96e-15 76.6
MS.gene53616.t1 MTR_8g081020 55.556 72 32 0 241 312 77 148 1.96e-15 76.6
MS.gene53616.t1 MTR_8g081020 55.556 72 32 0 241 312 153 224 1.96e-15 76.6
MS.gene53616.t1 MTR_8g081020 55.556 72 32 0 241 312 229 300 1.96e-15 76.6
MS.gene53616.t1 MTR_8g081020 55.556 72 32 0 241 312 305 376 1.96e-15 76.6
MS.gene53616.t1 MTR_4g080797 55.556 72 32 0 241 312 1 72 1.98e-15 76.6
MS.gene53616.t1 MTR_4g080797 55.556 72 32 0 241 312 77 148 1.98e-15 76.6
MS.gene53616.t1 MTR_4g080797 55.556 72 32 0 241 312 153 224 1.98e-15 76.6
MS.gene53616.t1 MTR_4g080797 55.556 72 32 0 241 312 229 300 1.98e-15 76.6
MS.gene53616.t1 MTR_4g080797 55.556 72 32 0 241 312 305 376 1.98e-15 76.6
MS.gene53616.t1 MTR_4g091580 55.556 72 32 0 241 312 1 72 1.98e-15 76.6
MS.gene53616.t1 MTR_4g091580 55.556 72 32 0 241 312 77 148 1.98e-15 76.6
MS.gene53616.t1 MTR_4g091580 55.556 72 32 0 241 312 153 224 1.98e-15 76.6
MS.gene53616.t1 MTR_4g091580 55.556 72 32 0 241 312 305 376 1.98e-15 76.6
MS.gene53616.t1 MTR_4g091580 54.167 72 33 0 241 312 229 300 6.30e-15 75.1
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 1 72 1.98e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 77 148 1.98e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 153 224 1.98e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 229 300 1.98e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 305 376 1.98e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 1 72 2.04e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 77 148 2.04e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 153 224 2.04e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 229 300 2.04e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 305 376 2.04e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 1 72 2.57e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 77 148 2.57e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 153 224 2.57e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 229 300 2.57e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 305 376 2.57e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 381 452 2.57e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 1 72 2.57e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 77 148 2.57e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 153 224 2.57e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 229 300 2.57e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 305 376 2.57e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 381 452 2.57e-15 76.6
MS.gene53616.t1 MTR_4g091580 55.556 72 32 0 241 312 1 72 3.08e-15 76.6
MS.gene53616.t1 MTR_4g091580 55.556 72 32 0 241 312 77 148 3.08e-15 76.6
MS.gene53616.t1 MTR_4g091580 55.556 72 32 0 241 312 153 224 3.08e-15 76.6
MS.gene53616.t1 MTR_4g091580 55.556 72 32 0 241 312 229 300 3.08e-15 76.6
MS.gene53616.t1 MTR_4g091580 55.556 72 32 0 241 312 381 452 3.08e-15 76.6
MS.gene53616.t1 MTR_4g091580 55.556 72 32 0 241 312 457 528 3.08e-15 76.6
MS.gene53616.t1 MTR_4g091580 54.167 72 33 0 241 312 305 376 3.20e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 1 72 3.11e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 77 148 3.11e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 153 224 3.11e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 229 300 3.11e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 305 376 3.11e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 381 452 3.11e-15 76.6
MS.gene53616.t1 MTR_4g081010 55.556 72 32 0 241 312 457 528 3.11e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 1 72 3.14e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 77 148 3.14e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 153 224 3.14e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 229 300 3.14e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 305 376 3.14e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 381 452 3.14e-15 76.6
MS.gene53616.t1 MTR_8g018230 55.556 72 32 0 241 312 457 528 3.14e-15 76.6
MS.gene53616.t1 MTR_4g088495 55.556 72 32 0 241 312 77 148 3.80e-15 76.6
MS.gene53616.t1 MTR_4g088495 55.556 72 32 0 241 312 153 224 3.80e-15 76.6
MS.gene53616.t1 MTR_4g088495 55.556 72 32 0 241 312 229 300 3.80e-15 76.6
MS.gene53616.t1 MTR_4g088495 55.556 72 32 0 241 312 305 376 3.80e-15 76.6
MS.gene53616.t1 MTR_4g088495 55.556 72 32 0 241 312 381 452 3.80e-15 76.6
MS.gene53616.t1 MTR_4g088495 55.556 72 32 0 241 312 457 528 3.80e-15 76.6
MS.gene53616.t1 MTR_4g088495 55.556 72 32 0 241 312 533 604 3.80e-15 76.6
MS.gene53616.t1 MTR_4g088495 55.556 72 32 0 241 312 609 680 3.80e-15 76.6
MS.gene53616.t1 MTR_4g088495 55.556 72 32 0 241 312 685 756 3.80e-15 76.6
MS.gene53616.t1 MTR_4g088495 55.556 72 32 0 241 312 761 832 3.80e-15 76.6
MS.gene53616.t1 MTR_4g088495 55.556 72 32 0 241 312 1 72 4.32e-15 76.3
MS.gene53616.t1 MTR_3g017590 25.463 216 137 7 11 209 53 261 4.39e-15 74.7
MS.gene53616.t1 MTR_5g076740 58.824 68 27 1 240 306 85 152 7.77e-15 71.6
MS.gene53616.t1 MTR_4g009980 51.515 66 32 0 247 312 2 67 1.67e-14 67.8
MS.gene53616.t1 MTR_8g479250 52.439 82 39 0 231 312 131 212 6.72e-14 71.2
MS.gene53616.t1 MTR_5g061310 48.684 76 39 0 241 316 2 77 7.59e-14 66.2
MS.gene53616.t1 MTR_5g076780 60.000 50 20 0 252 301 1 50 1.49e-12 62.4
MS.gene53616.t1 MTR_5g076350 52.941 68 31 1 241 307 8 75 2.29e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53616.t1 AT5G37930 37.349 249 149 5 4 247 103 349 1.06e-45 158
MS.gene53616.t1 AT1G66620 33.333 234 149 3 11 237 41 274 5.16e-39 140
MS.gene53616.t1 AT5G37870 33.333 225 145 4 5 224 36 260 3.12e-36 132
MS.gene53616.t1 AT5G37890 35.841 226 137 7 5 224 42 265 3.99e-34 126
MS.gene53616.t1 AT1G66650 32.530 249 155 7 4 240 76 323 4.72e-32 122
MS.gene53616.t1 AT1G66630 32.031 256 140 8 11 237 46 296 3.57e-30 116
MS.gene53616.t1 AT1G66660 31.154 260 143 8 2 238 94 340 6.92e-30 116
MS.gene53616.t1 AT5G37910 30.870 230 139 5 11 221 35 263 1.50e-29 114
MS.gene53616.t1 AT5G62800 36.559 186 112 4 11 190 40 225 3.44e-29 114
MS.gene53616.t1 AT5G62800 36.559 186 112 4 11 190 40 225 4.46e-29 114
MS.gene53616.t1 AT3G61790 27.679 224 138 7 3 209 52 268 5.51e-17 80.5
MS.gene53616.t1 AT4G27880 27.778 216 132 7 11 209 61 269 8.76e-17 80.1
MS.gene53616.t1 AT2G35635 55.556 72 32 0 241 312 1 72 1.05e-16 76.3
MS.gene53616.t1 AT1G31340 55.556 72 32 0 241 312 1 72 1.17e-16 76.3
MS.gene53616.t1 AT4G05050 55.556 72 32 0 241 312 1 72 1.22e-16 76.3
MS.gene53616.t1 AT4G05050 55.556 72 32 0 241 312 77 148 1.22e-16 76.3
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 1 72 1.22e-16 76.3
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 77 148 1.22e-16 76.3
MS.gene53616.t1 AT3G52590 55.556 72 32 0 241 312 1 72 1.65e-16 75.1
MS.gene53616.t1 AT2G36170 55.556 72 32 0 241 312 1 72 1.65e-16 75.1
MS.gene53616.t1 AT3G62250 55.556 72 32 0 241 312 1 72 2.43e-16 75.5
MS.gene53616.t1 AT2G47110 55.556 72 32 0 241 312 1 72 2.51e-16 75.5
MS.gene53616.t1 AT2G47110 55.556 72 32 0 241 312 1 72 2.51e-16 75.5
MS.gene53616.t1 AT1G23410 55.556 72 32 0 241 312 1 72 2.94e-16 75.1
MS.gene53616.t1 AT4G05050 55.556 72 32 0 241 312 1 72 4.98e-16 76.3
MS.gene53616.t1 AT4G05050 55.556 72 32 0 241 312 77 148 4.98e-16 76.3
MS.gene53616.t1 AT4G05050 55.556 72 32 0 241 312 153 224 4.98e-16 76.3
MS.gene53616.t1 AT4G05050 55.556 72 32 0 241 312 1 72 4.98e-16 76.3
MS.gene53616.t1 AT4G05050 55.556 72 32 0 241 312 77 148 4.98e-16 76.3
MS.gene53616.t1 AT4G05050 55.556 72 32 0 241 312 153 224 4.98e-16 76.3
MS.gene53616.t1 AT4G05050 55.556 72 32 0 241 312 1 72 4.98e-16 76.3
MS.gene53616.t1 AT4G05050 55.556 72 32 0 241 312 77 148 4.98e-16 76.3
MS.gene53616.t1 AT4G05050 55.556 72 32 0 241 312 153 224 4.98e-16 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 1 72 4.98e-16 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 77 148 4.98e-16 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 153 224 4.98e-16 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 1 72 4.98e-16 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 77 148 4.98e-16 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 153 224 4.98e-16 76.3
MS.gene53616.t1 AT2G41980 25.403 248 168 8 11 241 54 301 1.17e-15 76.6
MS.gene53616.t1 AT5G03240 55.556 72 32 0 241 312 1 72 1.19e-15 76.6
MS.gene53616.t1 AT5G03240 55.556 72 32 0 241 312 77 148 1.19e-15 76.6
MS.gene53616.t1 AT5G03240 55.556 72 32 0 241 312 153 224 1.19e-15 76.6
MS.gene53616.t1 AT5G03240 55.556 72 32 0 241 312 229 300 1.19e-15 76.6
MS.gene53616.t1 AT5G03240 55.556 72 32 0 241 312 1 72 1.19e-15 76.6
MS.gene53616.t1 AT5G03240 55.556 72 32 0 241 312 77 148 1.19e-15 76.6
MS.gene53616.t1 AT5G03240 55.556 72 32 0 241 312 153 224 1.19e-15 76.6
MS.gene53616.t1 AT5G03240 55.556 72 32 0 241 312 229 300 1.19e-15 76.6
MS.gene53616.t1 AT5G03240 55.556 72 32 0 241 312 1 72 1.19e-15 76.6
MS.gene53616.t1 AT5G03240 55.556 72 32 0 241 312 77 148 1.19e-15 76.6
MS.gene53616.t1 AT5G03240 55.556 72 32 0 241 312 153 224 1.19e-15 76.6
MS.gene53616.t1 AT5G03240 55.556 72 32 0 241 312 229 300 1.19e-15 76.6
MS.gene53616.t1 AT5G20620 55.556 72 32 0 241 312 1 72 1.19e-15 76.6
MS.gene53616.t1 AT5G20620 55.556 72 32 0 241 312 77 148 1.19e-15 76.6
MS.gene53616.t1 AT5G20620 55.556 72 32 0 241 312 153 224 1.19e-15 76.6
MS.gene53616.t1 AT5G20620 55.556 72 32 0 241 312 229 300 1.19e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 1 72 1.28e-15 76.3
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 77 148 1.28e-15 76.3
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 153 224 1.28e-15 76.3
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 229 300 1.28e-15 76.3
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 1 72 1.28e-15 76.3
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 77 148 1.28e-15 76.3
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 153 224 1.28e-15 76.3
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 229 300 1.28e-15 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 1 72 1.28e-15 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 77 148 1.28e-15 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 153 224 1.28e-15 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 229 300 1.28e-15 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 1 72 1.28e-15 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 77 148 1.28e-15 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 153 224 1.28e-15 76.3
MS.gene53616.t1 AT4G02890 55.556 72 32 0 241 312 229 300 1.28e-15 76.3
MS.gene53616.t1 AT1G65350 55.556 72 32 0 241 312 1 72 1.82e-15 76.3
MS.gene53616.t1 AT1G65350 55.556 72 32 0 241 312 152 223 6.03e-15 74.7
MS.gene53616.t1 AT1G65350 54.167 72 32 1 241 312 77 147 8.57e-13 68.6
MS.gene53616.t1 AT1G55060 54.167 72 33 0 241 312 77 148 1.86e-15 74.7
MS.gene53616.t1 AT1G55060 52.778 72 34 0 241 312 1 72 1.72e-14 72.0
MS.gene53616.t1 AT1G55060 52.778 72 34 0 241 312 153 224 1.19e-13 69.7
MS.gene53616.t1 AT5G20620 55.556 72 32 0 241 312 1 72 2.03e-15 76.6
MS.gene53616.t1 AT5G20620 55.556 72 32 0 241 312 77 148 2.03e-15 76.6
MS.gene53616.t1 AT5G20620 55.556 72 32 0 241 312 153 224 2.03e-15 76.6
MS.gene53616.t1 AT5G20620 55.556 72 32 0 241 312 229 300 2.03e-15 76.6
MS.gene53616.t1 AT5G20620 55.556 72 32 0 241 312 305 376 2.03e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 1 72 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 77 148 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 153 224 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 229 300 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 305 376 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 1 72 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 77 148 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 153 224 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 229 300 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 305 376 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 1 72 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 77 148 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 153 224 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 229 300 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 305 376 2.08e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 1 72 2.69e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 77 148 2.69e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 153 224 2.69e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 229 300 2.69e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 305 376 2.69e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 381 452 2.69e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 1 72 2.69e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 77 148 2.69e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 153 224 2.69e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 229 300 2.69e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 305 376 2.69e-15 76.6
MS.gene53616.t1 AT4G05320 55.556 72 32 0 241 312 381 452 2.69e-15 76.6
MS.gene53616.t1 AT5G37640 50.000 82 41 0 231 312 69 150 5.41e-15 74.7
MS.gene53616.t1 AT5G37640 51.389 72 35 0 241 312 155 226 3.38e-13 69.7
MS.gene53616.t1 AT5G37640 50.685 73 35 1 241 312 231 303 1.51e-11 64.7
MS.gene53616.t1 AT3G58040 25.000 248 169 8 11 241 57 304 9.71e-15 73.9
MS.gene53616.t1 AT3G58040 25.000 248 169 8 11 241 57 304 9.71e-15 73.9
MS.gene53616.t1 AT1G66610 52.381 63 30 0 11 73 53 115 1.26e-14 74.3
MS.gene53616.t1 AT1G66610 28.289 152 106 3 76 224 183 334 6.73e-13 68.9
MS.gene53616.t1 AT1G53930 51.389 72 35 0 241 312 86 157 1.76e-14 70.5
MS.gene53616.t1 AT1G66610 52.381 63 30 0 11 73 53 115 2.64e-14 71.6
MS.gene53616.t1 AT1G66610 47.887 71 37 0 6 76 153 223 1.34e-13 69.7
MS.gene53616.t1 AT3G58040 30.075 133 89 3 11 139 57 189 1.63e-13 68.9
MS.gene53616.t1 AT1G66660 27.751 209 115 8 53 238 21 216 4.14e-13 68.2
MS.gene53616.t1 AT3G09790 50.000 72 36 0 241 312 552 623 1.23e-12 68.9
MS.gene53616.t1 AT3G09790 51.389 72 35 0 241 312 79 150 1.50e-12 68.6
MS.gene53616.t1 AT3G09790 50.000 72 36 0 241 312 3 74 5.42e-12 67.0
MS.gene53616.t1 AT3G09790 46.753 77 36 1 241 312 238 314 7.25e-12 66.6
MS.gene53616.t1 AT3G09790 50.000 72 36 0 241 312 552 623 1.23e-12 68.9
MS.gene53616.t1 AT3G09790 51.389 72 35 0 241 312 79 150 1.50e-12 68.6
MS.gene53616.t1 AT3G09790 50.000 72 36 0 241 312 3 74 5.42e-12 67.0
MS.gene53616.t1 AT3G09790 46.753 77 36 1 241 312 238 314 7.25e-12 66.6

Find 80 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAACTATTCCCATCTTTC+AGG 0.143964 1.2:+29389409 MS.gene53616:CDS
GGAGGTACAACTTTCCTTTA+TGG 0.197138 1.2:-29391490 None:intergenic
AGACATGAACATGGGGATTC+TGG 0.269176 1.2:+29390894 MS.gene53616:CDS
GAGGTACAACTTTCCTTTAT+GGG 0.330163 1.2:-29391489 None:intergenic
CTGAAAGATGGGAATAGTTA+AGG 0.340707 1.2:-29389408 None:intergenic
CGCCACAGACCAGCCATTGC+TGG 0.342437 1.2:-29391586 None:intergenic
ATTGTTCTTCAAGGGGAAAA+TGG 0.346489 1.2:+29390975 MS.gene53616:CDS
GGAACTCGTTGGACGTTCTT+CGG 0.366157 1.2:-29391149 None:intergenic
TCGTCTGCCACCGCCACCTT+TGG 0.372646 1.2:+29391672 MS.gene53616:CDS
AGAAAATAAGTTACACTGAT+AGG 0.383704 1.2:+29390778 MS.gene53616:CDS
ACCAGCCATTGCTGGTGCAC+TGG 0.399473 1.2:-29391578 None:intergenic
GAGTTGCTTGTGATTCCATT+TGG 0.402141 1.2:+29391191 MS.gene53616:CDS
TTGCAGCAATCAAGCAAACT+AGG 0.409814 1.2:-29389374 None:intergenic
GGTTTCATCATTAGACTTCA+AGG 0.410456 1.2:-29390952 None:intergenic
CAGGTATAGTTATGATATAT+TGG 0.416141 1.2:+29391088 MS.gene53616:CDS
CCCCATGTTCATGTCTGAAA+TGG 0.418427 1.2:-29390887 None:intergenic
GTTCCTGAGTTTAGTGCAAC+AGG 0.418850 1.2:-29390646 None:intergenic
GATGAAACCATTGTTCTTCA+AGG 0.438126 1.2:+29390966 MS.gene53616:CDS
TGAAAGATGGGAATAGTTAA+GGG 0.442999 1.2:-29389407 None:intergenic
TACCTGGACTCGGAAGAATT+AGG 0.444350 1.2:-29391071 None:intergenic
TGTTGTAGTCGGCAAGGGTC+AGG 0.451067 1.2:-29391628 None:intergenic
GTCCTAATTCTTCCGAGTCC+AGG 0.459130 1.2:+29391069 MS.gene53616:CDS
GCAGTCAATCTTTGCTGCAT+TGG 0.459248 1.2:+29391047 MS.gene53616:CDS
ATCTTCATAAAGTCCCATAA+AGG 0.465883 1.2:+29391476 MS.gene53616:CDS
TGAAATGCATACCTGAAAGA+TGG 0.465935 1.2:-29389420 None:intergenic
CCAGCCATTGCTGGTGCACT+GGG 0.475042 1.2:-29391577 None:intergenic
ATGAAACCATTGTTCTTCAA+GGG 0.487345 1.2:+29390967 MS.gene53616:CDS
AGCAAAGTCACATCCTGAAA+GGG 0.487737 1.2:-29390841 None:intergenic
AATACGTTGCAGTGTGATAA+TGG 0.494945 1.2:+29390606 MS.gene53616:intron
CTCGGATGTTGTAGTCGGCA+AGG 0.499897 1.2:-29391634 None:intergenic
CCCAGTGCACCAGCAATGGC+TGG 0.509192 1.2:+29391577 MS.gene53616:CDS
TGTCTGAACGCTCAACCCTC+AGG 0.509977 1.2:-29391511 None:intergenic
CAATATATCATAACTATACC+TGG 0.513501 1.2:-29391087 None:intergenic
CGAAGATGGTTGACCCCTCT+CGG 0.520693 1.2:-29391652 None:intergenic
AGGGTCAGGTTGTCCTGTAG+TGG 0.524923 1.2:-29391614 None:intergenic
AGAGGGTCAGAGGAACCAAA+TGG 0.528144 1.2:-29391206 None:intergenic
GCAATCAAGCAAACTAGGGT+TGG 0.530572 1.2:-29389369 None:intergenic
GCAAAGTCACATCCTGAAAG+GGG 0.530762 1.2:-29390840 None:intergenic
GAAATGCATACCTGAAAGAT+GGG 0.530956 1.2:-29389419 None:intergenic
TCTAATTCCAAAGGTGGCGG+TGG 0.539115 1.2:-29391679 None:intergenic
CTGTGGCGCTAAGCCACTAC+AGG 0.540076 1.2:+29391601 MS.gene53616:CDS
CAGCAAAGTCACATCCTGAA+AGG 0.549420 1.2:-29390842 None:intergenic
TCTGATGAAAGAGTTGCTAA+AGG 0.550142 1.2:-29391170 None:intergenic
GTGGCGGTGGCAGACGAAGA+TGG 0.550475 1.2:-29391666 None:intergenic
ATATCCCAGTGCACCAGCAA+TGG 0.553195 1.2:+29391573 MS.gene53616:CDS
ATGCAAATATCTAGCTTGAG+AGG 0.554871 1.2:-29391224 None:intergenic
TCGGATGTTGTAGTCGGCAA+GGG 0.556014 1.2:-29391633 None:intergenic
ATGTGACTTTGCTGCATCAG+AGG 0.561657 1.2:+29390851 MS.gene53616:CDS
CCCCTCTCGGATGTTGTAGT+CGG 0.565673 1.2:-29391639 None:intergenic
TGCAGCAATCAAGCAAACTA+GGG 0.574861 1.2:-29389373 None:intergenic
ATCTAGCTTGAGAGGGTCAG+AGG 0.576385 1.2:-29391216 None:intergenic
TGAAACCATTGTTCTTCAAG+GGG 0.583182 1.2:+29390968 MS.gene53616:CDS
AAATGCAAAACATGGTTGCA+AGG 0.587331 1.2:+29390755 MS.gene53616:CDS
AAGGAAAGTTGTACCTCCTG+AGG 0.588179 1.2:+29391495 MS.gene53616:CDS
CACCAGCAATGGCTGGTCTG+TGG 0.597250 1.2:+29391584 MS.gene53616:CDS
TGGTGATAATCTAATTCCAA+AGG 0.599905 1.2:-29391688 None:intergenic
ATAGTTATGATATATTGGCT+AGG 0.603327 1.2:+29391093 MS.gene53616:CDS
TGCAAATATCTAGCTTGAGA+GGG 0.605717 1.2:-29391223 None:intergenic
GACCATTTCAGACATGAACA+TGG 0.605812 1.2:+29390885 MS.gene53616:CDS
ACCATTTCAGACATGAACAT+GGG 0.607412 1.2:+29390886 MS.gene53616:CDS
AGACTTCAAGGAGACAATGA+AGG 0.608582 1.2:-29390940 None:intergenic
GCCGACTACAACATCCGAGA+GGG 0.611255 1.2:+29391638 MS.gene53616:CDS
GACAATGAAGGAGTGGCCAT+AGG 0.611353 1.2:-29390928 None:intergenic
AGGAAAGTTGTACCTCCTGA+GGG 0.617887 1.2:+29391496 MS.gene53616:CDS
ATGTTCATGTCTGAAATGGT+CGG 0.618581 1.2:-29390883 None:intergenic
CTACCTGTTGCACTAAACTC+AGG 0.619523 1.2:+29390643 MS.gene53616:CDS
TAATCTAATTCCAAAGGTGG+CGG 0.621304 1.2:-29391682 None:intergenic
GTTCTTCAAGGGGAAAATGG+TGG 0.626652 1.2:+29390978 MS.gene53616:CDS
ATCATAACTATACCTGGACT+CGG 0.629309 1.2:-29391081 None:intergenic
TGATAATCTAATTCCAAAGG+TGG 0.637981 1.2:-29391685 None:intergenic
TCAAGGAGACAATGAAGGAG+TGG 0.639097 1.2:-29390935 None:intergenic
CTAGGGTTGGAGATCATCAA+CGG 0.655898 1.2:-29389356 None:intergenic
CCATTTCAGACATGAACATG+GGG 0.669952 1.2:+29390887 MS.gene53616:CDS
CAAAGTCACATCCTGAAAGG+GGG 0.676119 1.2:-29390839 None:intergenic
TCATGTCCAAATGCAAAACA+TGG 0.681945 1.2:+29390747 MS.gene53616:CDS
CTGAACGCTCAACCCTCAGG+AGG 0.686466 1.2:-29391508 None:intergenic
GAGTTGCTAAAGGAACTCGT+TGG 0.700460 1.2:-29391160 None:intergenic
GGAAATAGGAGGTACCTTGG+GGG 0.715093 1.2:-29391249 None:intergenic
CCGACTACAACATCCGAGAG+GGG 0.717881 1.2:+29391639 MS.gene53616:CDS
TGCCGACTACAACATCCGAG+AGG 0.737323 1.2:+29391637 MS.gene53616:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAGAATAAATGTTTAAA+CGG - chr1.2:29389754-29389773 None:intergenic 10.0%
!! AAAAGAATAAATGTTTAAAC+GGG - chr1.2:29389753-29389772 None:intergenic 15.0%
!! AAATTAAAGATGAATATTAG+AGG + chr1.2:29390079-29390098 MS.gene53616:intron 15.0%
!! AATAAAATAACAACTTTAAC+CGG - chr1.2:29391299-29391318 None:intergenic 15.0%
!! CACTATATTAAATAACTATT+GGG + chr1.2:29389622-29389641 MS.gene53616:intron 15.0%
!! TCACTATATTAAATAACTAT+TGG + chr1.2:29389621-29389640 MS.gene53616:intron 15.0%
!!! AAAAATAGAATTATGCTTTT+GGG + chr1.2:29391020-29391039 MS.gene53616:CDS 15.0%
!!! AAACACATGATAAATTTTTA+AGG + chr1.2:29389579-29389598 MS.gene53616:intron 15.0%
!!! CTTTATTTTATTCTAACAAA+CGG + chr1.2:29390547-29390566 MS.gene53616:intron 15.0%
!!! TAAAAATAGAATTATGCTTT+TGG + chr1.2:29391019-29391038 MS.gene53616:CDS 15.0%
!!! TTGATTTTAAAACTATTTCT+AGG - chr1.2:29389728-29389747 None:intergenic 15.0%
!! AAAGAATAAATGTTTAAACG+GGG - chr1.2:29389752-29389771 None:intergenic 20.0%
!! AAATCAACAAAGAAAATTTG+AGG - chr1.2:29391431-29391450 None:intergenic 20.0%
!! ATAAAATAACAACTTTAACC+GGG - chr1.2:29391298-29391317 None:intergenic 20.0%
!! CTAAATATGAGTATTTAAGT+GGG - chr1.2:29389984-29390003 None:intergenic 20.0%
!! CTAATATAAAAACTTTGCAT+TGG - chr1.2:29390481-29390500 None:intergenic 20.0%
!! TAAATATGAGTATTTAAGTG+GGG - chr1.2:29389983-29390002 None:intergenic 20.0%
! AAATATGAGTATTTAAGTGG+GGG - chr1.2:29389982-29390001 None:intergenic 25.0%
! AATAAAAGCGATTCCTTAAA+TGG - chr1.2:29390337-29390356 None:intergenic 25.0%
! AGAAAATAAGTTACACTGAT+AGG + chr1.2:29390778-29390797 MS.gene53616:CDS 25.0%
! CAATATATCATAACTATACC+TGG - chr1.2:29391090-29391109 None:intergenic 25.0%
! CAGGTATAGTTATGATATAT+TGG + chr1.2:29391088-29391107 MS.gene53616:CDS 25.0%
! CCACTTAAATACTCATATTT+AGG + chr1.2:29389982-29390001 MS.gene53616:intron 25.0%
! CCTAAATATGAGTATTTAAG+TGG - chr1.2:29389985-29390004 None:intergenic 25.0%
! GCATATATGACAACAAATTA+GGG - chr1.2:29389791-29389810 None:intergenic 25.0%
! TAAAATAACAACTTTAACCG+GGG - chr1.2:29391297-29391316 None:intergenic 25.0%
! TGCATATATGACAACAAATT+AGG - chr1.2:29389792-29389811 None:intergenic 25.0%
!! AAAGTGAATTACTTGTTAAG+AGG - chr1.2:29390024-29390043 None:intergenic 25.0%
!! ATAGTTATGATATATTGGCT+AGG + chr1.2:29391093-29391112 MS.gene53616:CDS 25.0%
!! CTGTTAGTGTTTTCTATTTA+TGG + chr1.2:29391388-29391407 MS.gene53616:intron 25.0%
!! GAAGAAAAAGATTTTTGACA+AGG + chr1.2:29391547-29391566 MS.gene53616:CDS 25.0%
!!! AACTTATTTTCTAACTCTGA+AGG + chr1.2:29389463-29389482 MS.gene53616:intron 25.0%
!!! AAGGAATCGCTTTTATTTAT+TGG + chr1.2:29390340-29390359 MS.gene53616:intron 25.0%
!!! AGGAATCGCTTTTATTTATT+GGG + chr1.2:29390341-29390360 MS.gene53616:intron 25.0%
!!! TGTCTTTTGTTATAAGAATC+TGG - chr1.2:29390170-29390189 None:intergenic 25.0%
!!! TTTAAAACTATTTCTAGGAC+CGG - chr1.2:29389723-29389742 None:intergenic 25.0%
AAAATAACAACTTTAACCGG+GGG - chr1.2:29391296-29391315 None:intergenic 30.0%
ACTTAGGTAGAAACATAATG+AGG + chr1.2:29390269-29390288 MS.gene53616:intron 30.0%
AGTATGACATGATGAATAAG+TGG + chr1.2:29390295-29390314 MS.gene53616:intron 30.0%
ATCTTCATAAAGTCCCATAA+AGG + chr1.2:29391476-29391495 MS.gene53616:CDS 30.0%
ATGAAACCATTGTTCTTCAA+GGG + chr1.2:29390967-29390986 MS.gene53616:CDS 30.0%
GATATCTGTGATTCCATTTA+AGG + chr1.2:29390321-29390340 MS.gene53616:intron 30.0%
TATTCTAACAAACGGTTCAA+AGG + chr1.2:29390555-29390574 MS.gene53616:intron 30.0%
TGAAAGATGGGAATAGTTAA+GGG - chr1.2:29389410-29389429 None:intergenic 30.0%
!! CTCTAAAGCGAGAAAATTAA+AGG - chr1.2:29390144-29390163 None:intergenic 30.0%
!! CTTTAATTTTCTCGCTTTAG+AGG + chr1.2:29390142-29390161 MS.gene53616:intron 30.0%
!! GTTTTTCAAATGCCAAACAA+AGG + chr1.2:29391365-29391384 MS.gene53616:intron 30.0%
!! TCTGGAATCAAATTTTCCTA+TGG + chr1.2:29390912-29390931 MS.gene53616:CDS 30.0%
!! TTTTCTAACTCTGAAGGTTA+AGG + chr1.2:29389469-29389488 MS.gene53616:intron 30.0%
AAACACTAACAGCCTTTGTT+TGG - chr1.2:29391380-29391399 None:intergenic 35.0%
AAATAACAACTTTAACCGGG+GGG - chr1.2:29391295-29391314 None:intergenic 35.0%
AAATGCAAAACATGGTTGCA+AGG + chr1.2:29390755-29390774 MS.gene53616:CDS 35.0%
AATACGTTGCAGTGTGATAA+TGG + chr1.2:29390606-29390625 MS.gene53616:intron 35.0%
ACCATTTCAGACATGAACAT+GGG + chr1.2:29390886-29390905 MS.gene53616:CDS 35.0%
AGTTAAGAGTCCTACATTTG+TGG - chr1.2:29389881-29389900 None:intergenic 35.0%
ATCATAACTATACCTGGACT+CGG - chr1.2:29391084-29391103 None:intergenic 35.0%
ATTGTTCTTCAAGGGGAAAA+TGG + chr1.2:29390975-29390994 MS.gene53616:CDS 35.0%
CAAAGCATGGAAAAGGAAAT+AGG - chr1.2:29391266-29391285 None:intergenic 35.0%
CAAATTAGGGTGTGTTTGTT+CGG - chr1.2:29389778-29389797 None:intergenic 35.0%
CTGAAAGATGGGAATAGTTA+AGG - chr1.2:29389411-29389430 None:intergenic 35.0%
CTTAACTATTCCCATCTTTC+AGG + chr1.2:29389409-29389428 MS.gene53616:CDS 35.0%
GAAAAACCAAAGCATGGAAA+AGG - chr1.2:29391273-29391292 None:intergenic 35.0%
GAAATGCATACCTGAAAGAT+GGG - chr1.2:29389422-29389441 None:intergenic 35.0%
GAGGTACAACTTTCCTTTAT+GGG - chr1.2:29391492-29391511 None:intergenic 35.0%
GATGAAACCATTGTTCTTCA+AGG + chr1.2:29390966-29390985 MS.gene53616:CDS 35.0%
GGTTTCATCATTAGACTTCA+AGG - chr1.2:29390955-29390974 None:intergenic 35.0%
TCATGTCCAAATGCAAAACA+TGG + chr1.2:29390747-29390766 MS.gene53616:CDS 35.0%
TCTGATGAAAGAGTTGCTAA+AGG - chr1.2:29391173-29391192 None:intergenic 35.0%
TGAAACCATTGTTCTTCAAG+GGG + chr1.2:29390968-29390987 MS.gene53616:CDS 35.0%
TGAAATGCATACCTGAAAGA+TGG - chr1.2:29389423-29389442 None:intergenic 35.0%
TTGTAGGCAGCATAAAAGAA+TGG + chr1.2:29390218-29390237 MS.gene53616:intron 35.0%
! ACCTAAGTGTTGTGTCTATA+GGG - chr1.2:29390257-29390276 None:intergenic 35.0%
! ATGCAAATATCTAGCTTGAG+AGG - chr1.2:29391227-29391246 None:intergenic 35.0%
! ATGTTCATGTCTGAAATGGT+CGG - chr1.2:29390886-29390905 None:intergenic 35.0%
! ATTTTCCCCTTGAAGAACAA+TGG - chr1.2:29390976-29390995 None:intergenic 35.0%
! CTATTTCCTTTTCCATGCTT+TGG + chr1.2:29391264-29391283 MS.gene53616:intron 35.0%
! TACCTAAGTGTTGTGTCTAT+AGG - chr1.2:29390258-29390277 None:intergenic 35.0%
! TGCAAATATCTAGCTTGAGA+GGG - chr1.2:29391226-29391245 None:intergenic 35.0%
! TTGCAACCATGTTTTGCATT+TGG - chr1.2:29390756-29390775 None:intergenic 35.0%
AAAGCCACATAAGATGAGGA+GGG - chr1.2:29390200-29390219 None:intergenic 40.0%
AACTGAAATTGTTGTCCCCT+TGG - chr1.2:29389671-29389690 None:intergenic 40.0%
ACATCATGTCATCGCACTTA+AGG - chr1.2:29389830-29389849 None:intergenic 40.0%
AGACTTCAAGGAGACAATGA+AGG - chr1.2:29390943-29390962 None:intergenic 40.0%
AGATATTTGCATAACCCCCA+AGG + chr1.2:29391235-29391254 MS.gene53616:CDS 40.0%
AGCAAAGTCACATCCTGAAA+GGG - chr1.2:29390844-29390863 None:intergenic 40.0%
AGCATGGAAAAGGAAATAGG+AGG - chr1.2:29391263-29391282 None:intergenic 40.0%
AGTTGTGTTGTGGTTTACCA+AGG + chr1.2:29389651-29389670 MS.gene53616:intron 40.0%
CATCATGTCATCGCACTTAA+GGG - chr1.2:29389829-29389848 None:intergenic 40.0%
CCATTTCAGACATGAACATG+GGG + chr1.2:29390887-29390906 MS.gene53616:CDS 40.0%
CTACAAAGCCACATAAGATG+AGG - chr1.2:29390204-29390223 None:intergenic 40.0%
CTAGGACCGGAAAAAATCAA+GGG - chr1.2:29389710-29389729 None:intergenic 40.0%
GACCATTTCAGACATGAACA+TGG + chr1.2:29390885-29390904 MS.gene53616:CDS 40.0%
GAGTTGCTTGTGATTCCATT+TGG + chr1.2:29391191-29391210 MS.gene53616:CDS 40.0%
GATTTACTTAACTAGTGCCC+CGG - chr1.2:29390522-29390541 None:intergenic 40.0%
GTTGTGTTGTGGTTTACCAA+GGG + chr1.2:29389652-29389671 MS.gene53616:intron 40.0%
TCCAGATATCGAGTCTTCTT+GGG - chr1.2:29389909-29389928 None:intergenic 40.0%
TCCCTATAGACACAACACTT+AGG + chr1.2:29390253-29390272 MS.gene53616:intron 40.0%
TGACATGATGTGTTGTGGTT+TGG + chr1.2:29389839-29389858 MS.gene53616:intron 40.0%
TGCAGCAATCAAGCAAACTA+GGG - chr1.2:29389376-29389395 None:intergenic 40.0%
TTGCAGCAATCAAGCAAACT+AGG - chr1.2:29389377-29389396 None:intergenic 40.0%
TTGTGTCTATAGGGACAACT+TGG - chr1.2:29390248-29390267 None:intergenic 40.0%
TTGTGTTGTGGTTTACCAAG+GGG + chr1.2:29389653-29389672 MS.gene53616:intron 40.0%
! ATCGCACTTAAGGGCATATA+TGG - chr1.2:29389820-29389839 None:intergenic 40.0%
! GGAGGTACAACTTTCCTTTA+TGG - chr1.2:29391493-29391512 None:intergenic 40.0%
! GTTTTTCTTAACCAGTGCTC+CGG + chr1.2:29390500-29390519 MS.gene53616:intron 40.0%
! TCTAGGACCGGAAAAAATCA+AGG - chr1.2:29389711-29389730 None:intergenic 40.0%
! TTTTCCCTCCTCATCTTATG+TGG + chr1.2:29390193-29390212 MS.gene53616:intron 40.0%
! TTTTTCTTAACCAGTGCTCC+GGG + chr1.2:29390501-29390520 MS.gene53616:intron 40.0%
!! AAAGGAAATAGGAGGTACCT+TGG - chr1.2:29391255-29391274 None:intergenic 40.0%
!! AAGGAAATAGGAGGTACCTT+GGG - chr1.2:29391254-29391273 None:intergenic 40.0%
!! CTCATCTTATGTGGCTTTGT+AGG + chr1.2:29390202-29390221 MS.gene53616:intron 40.0%
!!! CCATTGCCCTTGATTTTTTC+CGG + chr1.2:29389701-29389720 MS.gene53616:intron 40.0%
AAGGAAAGTTGTACCTCCTG+AGG + chr1.2:29391495-29391514 MS.gene53616:CDS 45.0%
AGACATGAACATGGGGATTC+TGG + chr1.2:29390894-29390913 MS.gene53616:CDS 45.0%
AGGAAAGTTGTACCTCCTGA+GGG + chr1.2:29391496-29391515 MS.gene53616:CDS 45.0%
ATGTGACTTTGCTGCATCAG+AGG + chr1.2:29390851-29390870 MS.gene53616:CDS 45.0%
CAAAGCCACATAAGATGAGG+AGG - chr1.2:29390201-29390220 None:intergenic 45.0%
CAAAGTCACATCCTGAAAGG+GGG - chr1.2:29390842-29390861 None:intergenic 45.0%
CAGCAAAGTCACATCCTGAA+AGG - chr1.2:29390845-29390864 None:intergenic 45.0%
CCAGATATCGAGTCTTCTTG+GGG - chr1.2:29389908-29389927 None:intergenic 45.0%
CCCCATGTTCATGTCTGAAA+TGG - chr1.2:29390890-29390909 None:intergenic 45.0%
CCGGAAAAAATCAAGGGCAA+TGG - chr1.2:29389704-29389723 None:intergenic 45.0%
CTACCTGTTGCACTAAACTC+AGG + chr1.2:29390643-29390662 MS.gene53616:CDS 45.0%
CTAGGGTTGGAGATCATCAA+CGG - chr1.2:29389359-29389378 None:intergenic 45.0%
CTCCAGATATCGAGTCTTCT+TGG - chr1.2:29389910-29389929 None:intergenic 45.0%
GAGTTGCTAAAGGAACTCGT+TGG - chr1.2:29391163-29391182 None:intergenic 45.0%
GCAAAGTCACATCCTGAAAG+GGG - chr1.2:29390843-29390862 None:intergenic 45.0%
GCAATCAAGCAAACTAGGGT+TGG - chr1.2:29389372-29389391 None:intergenic 45.0%
GCAGTCAATCTTTGCTGCAT+TGG + chr1.2:29391047-29391066 MS.gene53616:CDS 45.0%
GTTCCTGAGTTTAGTGCAAC+AGG - chr1.2:29390649-29390668 None:intergenic 45.0%
GTTCTTCAAGGGGAAAATGG+TGG + chr1.2:29390978-29390997 MS.gene53616:CDS 45.0%
TACCTGGACTCGGAAGAATT+AGG - chr1.2:29391074-29391093 None:intergenic 45.0%
TCAAGGAGACAATGAAGGAG+TGG - chr1.2:29390938-29390957 None:intergenic 45.0%
TGCGATGACATGATGTGTTG+TGG + chr1.2:29389834-29389853 MS.gene53616:intron 45.0%
TGGGACATGAAGTTGTGTTG+TGG + chr1.2:29389641-29389660 MS.gene53616:intron 45.0%
! TTTTCTTAACCAGTGCTCCG+GGG + chr1.2:29390502-29390521 MS.gene53616:intron 45.0%
!! AGGAAATAGGAGGTACCTTG+GGG - chr1.2:29391253-29391272 None:intergenic 45.0%
!! TGTGTTGTGGTTTGGTAGTG+AGG + chr1.2:29389847-29389866 MS.gene53616:intron 45.0%
AGAGGGTCAGAGGAACCAAA+TGG - chr1.2:29391209-29391228 None:intergenic 50.0%
AGTGCCTCGGACACTAGTTA+AGG + chr1.2:29390375-29390394 MS.gene53616:intron 50.0%
ATATCCCAGTGCACCAGCAA+TGG + chr1.2:29391573-29391592 MS.gene53616:CDS 50.0%
CCCCAAGAAGACTCGATATC+TGG + chr1.2:29389905-29389924 MS.gene53616:intron 50.0%
GACAATGAAGGAGTGGCCAT+AGG - chr1.2:29390931-29390950 None:intergenic 50.0%
GCTTCCTTAACTAGTGTCCG+AGG - chr1.2:29390382-29390401 None:intergenic 50.0%
GGAACTCGTTGGACGTTCTT+CGG - chr1.2:29391152-29391171 None:intergenic 50.0%
GGCTGTAGCACCACAAATGT+AGG + chr1.2:29389868-29389887 MS.gene53616:intron 50.0%
GGTCATGTTAACCAGTGCCT+CGG + chr1.2:29390362-29390381 MS.gene53616:intron 50.0%
GTCCTAATTCTTCCGAGTCC+AGG + chr1.2:29391069-29391088 MS.gene53616:CDS 50.0%
TCGGATGTTGTAGTCGGCAA+GGG - chr1.2:29391636-29391655 None:intergenic 50.0%
TTAACTAGTGTCCGAGGCAC+TGG - chr1.2:29390376-29390395 None:intergenic 50.0%
! ATCTAGCTTGAGAGGGTCAG+AGG - chr1.2:29391219-29391238 None:intergenic 50.0%
! TATCTGGAGCGTGATGTGAG+TGG + chr1.2:29389921-29389940 MS.gene53616:intron 50.0%
!! GGAAATAGGAGGTACCTTGG+GGG - chr1.2:29391252-29391271 None:intergenic 50.0%
!!! CATGCTTTGGTTTTTCCCCC+CGG + chr1.2:29391277-29391296 MS.gene53616:intron 50.0%
CCATGTTACTGCCCCCTTTC+AGG + chr1.2:29390828-29390847 MS.gene53616:CDS 55.0%
CCCCTCTCGGATGTTGTAGT+CGG - chr1.2:29391642-29391661 None:intergenic 55.0%
CCGACTACAACATCCGAGAG+GGG + chr1.2:29391639-29391658 MS.gene53616:CDS 55.0%
CCTGAAAGGGGGCAGTAACA+TGG - chr1.2:29390831-29390850 None:intergenic 55.0%
CGAAGATGGTTGACCCCTCT+CGG - chr1.2:29391655-29391674 None:intergenic 55.0%
CGGGGGGAAAAACCAAAGCA+TGG - chr1.2:29391279-29391298 None:intergenic 55.0%
CTCGGATGTTGTAGTCGGCA+AGG - chr1.2:29391637-29391656 None:intergenic 55.0%
GCCGACTACAACATCCGAGA+GGG + chr1.2:29391638-29391657 MS.gene53616:CDS 55.0%
GGAGCGTGATGTGAGTGGTT+GGG + chr1.2:29389926-29389945 MS.gene53616:intron 55.0%
TGGAGCGTGATGTGAGTGGT+TGG + chr1.2:29389925-29389944 MS.gene53616:intron 55.0%
TGTCTGAACGCTCAACCCTC+AGG - chr1.2:29391514-29391533 None:intergenic 55.0%
TGTTGTAGTCGGCAAGGGTC+AGG - chr1.2:29391631-29391650 None:intergenic 55.0%
! AGGGTCAGGTTGTCCTGTAG+TGG - chr1.2:29391617-29391636 None:intergenic 55.0%
! TGCCGACTACAACATCCGAG+AGG + chr1.2:29391637-29391656 MS.gene53616:CDS 55.0%
ACCAGCCATTGCTGGTGCAC+TGG - chr1.2:29391581-29391600 None:intergenic 60.0%
CCAGCCATTGCTGGTGCACT+GGG - chr1.2:29391580-29391599 None:intergenic 60.0%
CTGAACGCTCAACCCTCAGG+AGG - chr1.2:29391511-29391530 None:intergenic 60.0%
CTGTGGCGCTAAGCCACTAC+AGG + chr1.2:29391601-29391620 MS.gene53616:CDS 60.0%
TAACTAGTGCCCCGGAGCAC+TGG - chr1.2:29390514-29390533 None:intergenic 60.0%
!! CACCAGCAATGGCTGGTCTG+TGG + chr1.2:29391584-29391603 MS.gene53616:CDS 60.0%
CCCAGTGCACCAGCAATGGC+TGG + chr1.2:29391577-29391596 MS.gene53616:CDS 65.0%
CGCCACAGACCAGCCATTGC+TGG - chr1.2:29391589-29391608 None:intergenic 65.0%
GTGGCGGTGGCAGACGAAGA+TGG - chr1.2:29391669-29391688 None:intergenic 65.0%
TCGTCTGCCACCGCCACCTT+TGG + chr1.2:29391672-29391691 MS.gene53616:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 29389350 29391700 29389350 ID=MS.gene53616
chr1.2 mRNA 29389350 29391700 29389350 ID=MS.gene53616.t1;Parent=MS.gene53616
chr1.2 exon 29389350 29389430 29389350 ID=MS.gene53616.t1.exon1;Parent=MS.gene53616.t1
chr1.2 CDS 29389350 29389430 29389350 ID=cds.MS.gene53616.t1;Parent=MS.gene53616.t1
chr1.2 exon 29390618 29391256 29390618 ID=MS.gene53616.t1.exon2;Parent=MS.gene53616.t1
chr1.2 CDS 29390618 29391256 29390618 ID=cds.MS.gene53616.t1;Parent=MS.gene53616.t1
chr1.2 exon 29391470 29391700 29391470 ID=MS.gene53616.t1.exon3;Parent=MS.gene53616.t1
chr1.2 CDS 29391470 29391700 29391470 ID=cds.MS.gene53616.t1;Parent=MS.gene53616.t1
Gene Sequence

>MS.gene53616

ATGGAGCCGTTGATGATCTCCAACCCTAGTTTGCTTGATTGCTGCAAATGTCTTCAACCCTTAACTATTCCCATCTTTCAGGTATGCATTTCATTCTTTTTATTTTCTTTCATAACTTATTTTCTAACTCTGAAGGTTAAGGTGAGTTTGATCTGTTAAGAGATAAATACAAGACAAAACAACAACGAAATCAAAACAACACATGATAATTTTTTTTCTTTGTTCAAAGAAACACATGATAAATTTTTAAGGTATTGAACAAAAAGTTATTTCACTATATTAAATAACTATTGGGACATGAAGTTGTGTTGTGGTTTACCAAGGGGACAACAATTTCAGTTTTTCTTAAGTCCATTGCCCTTGATTTTTTCCGGTCCTAGAAATAGTTTTAAAATCAAACCCCGTTTAAACATTTATTCTTTTAGCCGAACAAACACACCCTAATTTGTTGTCATATATGCAATATGCCATATATGCCCTTAAGTGCGATGACATGATGTGTTGTGGTTTGGTAGTGAGGCTGTAGCACCACAAATGTAGGACTCTTAACTCATGCCCCAAGAAGACTCGATATCTGGAGCGTGATGTGAGTGGTTGGGTAGACTTTGATACTATCTTTAGAATTTATGCCCCCACTTAAATACTCATATTTAGGCTTTATCTCATGTGAGCCTCTTAACAAGTAATTCACTTTAGAAGTTAAAGTAATTATACTAAGCAATAATTAGAAAATTAAAGATGAATATTAGAGGTACATCAGAACAATCAAGAGTTTTTAATTAAGATAACGACCTTTAATTTTCTCGCTTTAGAGGAGCCAGATTCTTATAACAAAAGACATTATTTTCCCTCCTCATCTTATGTGGCTTTGTAGGCAGCATAAAAGAATGGAGAACCAAGTTGTCCCTATAGACACAACACTTAGGTAGAAACATAATGAGGTCTAGTATGACATGATGAATAAGTGGTTAGATATCTGTGATTCCATTTAAGGAATCGCTTTTATTTATTGGGTCATGTTAACCAGTGCCTCGGACACTAGTTAAGGAAGCAAAAATAAAATTTTTTCATAAAAAACAACAACATTTTGACTTTCATAAAGTTGAACATTCTACTTTTCACTAGTTTCCAATGCAAAGTTTTTATATTAGTTTTTCTTAACCAGTGCTCCGGGGCACTAGTTAAGTAAATCTTTTACTTTATTTTATTCTAACAAACGGTTCAAAGGCTAATTTCATGATTTTCTTTTATGTTGCAATACGTTGCAGTGTGATAATGGTCATATTGTTTGCTCTACCTGTTGCACTAAACTCAGGAACAAGTGTCACGAGTGCTCATTGTGCATTAGCTCAAAACGTTGTAAAGTCATTGAGAATCTATTGCGATCTATCAAAATGTCATGTCCAAATGCAAAACATGGTTGCAAGGAGAAAATAAGTTACACTGATAGGAAGCATGAAGAAGAATGCAACTACATACCATGTTACTGCCCCCTTTCAGGATGTGACTTTGCTGCATCAGAGGAAGTTTTATCCGACCATTTCAGACATGAACATGGGGATTCTGGAATCAAATTTTCCTATGGCCACTCCTTCATTGTCTCCTTGAAGTCTAATGATGAAACCATTGTTCTTCAAGGGGAAAATGGTGGTAAACTATTTATTCTAAATAAAAATAGAATTATGCTTTTGGGAAATGCAGTCAATCTTTGCTGCATTGGTCCTAATTCTTCCGAGTCCAGGTATAGTTATGATATATTGGCTAGGTCTCAGATATGCAAACTGAAATTACATTCTTCTCCGAAGAACGTCCAACGAGTTCCTTTAGCAACTCTTTCATCAGAGTTGCTTGTGATTCCATTTGGTTCCTCTGACCCTCTCAAGCTAGATATTTGCATAACCCCCAAGGTACCTCCTATTTCCTTTTCCATGCTTTGGTTTTTCCCCCCGGTTAAAGTTGTTATTTTATTTTTTTATATTTTAAATTTTTACTCTAGCATTTTATCTTATTCTTCAGTTTTTCAAATGCCAAACAAAGGCTGTTAGTGTTTTCTATTTATGGATCAGTTCTTGAAAAATCCTCAAATTTTCTTTGTTGATTTACTTGCAATTGTTGTGCAGATGCAAATCTTCATAAAGTCCCATAAAGGAAAGTTGTACCTCCTGAGGGTTGAGCGTTCAGACACGATACTCAATGTGAAGAAAAAGATTTTTGACAAGGAAGATATCCCAGTGCACCAGCAATGGCTGGTCTGTGGCGCTAAGCCACTACAGGACAACCTGACCCTTGCCGACTACAACATCCGAGAGGGGTCAACCATCTTCGTCTGCCACCGCCACCTTTGGAATTAG

Protein sequence

>MS.gene53616.t1

MEPLMISNPSLLDCCKCLQPLTIPIFQCDNGHIVCSTCCTKLRNKCHECSLCISSKRCKVIENLLRSIKMSCPNAKHGCKEKISYTDRKHEEECNYIPCYCPLSGCDFAASEEVLSDHFRHEHGDSGIKFSYGHSFIVSLKSNDETIVLQGENGGKLFILNKNRIMLLGNAVNLCCIGPNSSESRYSYDILARSQICKLKLHSSPKNVQRVPLATLSSELLVIPFGSSDPLKLDICITPKMQIFIKSHKGKLYLLRVERSDTILNVKKKIFDKEDIPVHQQWLVCGAKPLQDNLTLADYNIREGSTIFVCHRHLWN