AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017321


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017321.t1 MTR_5g076720 70.614 228 65 2 2 227 162 389 3.26e-105 310
MS.gene017321.t1 MTR_5g076810 66.216 222 72 2 2 222 44 263 3.98e-95 280
MS.gene017321.t1 MTR_1g046640 64.253 221 77 1 2 222 90 308 3.80e-91 272
MS.gene017321.t1 MTR_5g067400 64.253 221 77 1 2 222 91 309 6.24e-90 269
MS.gene017321.t1 MTR_1g046650 63.927 219 77 1 2 220 21 237 7.61e-90 266
MS.gene017321.t1 MTR_2g038420 62.609 230 82 3 2 227 105 334 7.22e-89 266
MS.gene017321.t1 MTR_1g046650 63.927 219 77 1 2 220 90 306 1.32e-88 265
MS.gene017321.t1 MTR_1g046650 63.927 219 77 1 2 220 90 306 4.22e-88 264
MS.gene017321.t1 MTR_1g046650 63.927 219 77 1 2 220 121 337 8.47e-88 264
MS.gene017321.t1 MTR_7g024290 62.389 226 82 2 2 226 91 314 4.17e-86 259
MS.gene017321.t1 MTR_5g061290 58.036 224 91 1 2 222 97 320 1.65e-83 253
MS.gene017321.t1 MTR_2g038430 58.824 238 86 3 2 227 105 342 7.07e-83 251
MS.gene017321.t1 MTR_5g076505 58.108 222 92 1 2 222 87 308 8.96e-83 250
MS.gene017321.t1 MTR_5g076520 60.538 223 86 2 2 222 91 313 1.23e-81 248
MS.gene017321.t1 MTR_7g094390 59.817 219 86 1 2 220 252 468 1.98e-80 249
MS.gene017321.t1 MTR_5g076660 57.576 231 93 2 2 229 113 341 1.76e-77 238
MS.gene017321.t1 MTR_5g076370 54.018 224 98 2 2 222 114 335 1.78e-70 220
MS.gene017321.t1 MTR_5g076820 62.295 183 65 3 2 181 98 279 9.91e-68 211
MS.gene017321.t1 MTR_5g076540 69.565 138 42 0 2 139 91 228 9.61e-62 194
MS.gene017321.t1 MTR_5g077020 68.456 149 41 3 2 148 62 206 2.52e-58 185
MS.gene017321.t1 MTR_4g058025 70.476 105 30 1 2 105 24 128 1.63e-43 146
MS.gene017321.t1 MTR_4g094468 39.073 151 91 1 2 152 177 326 5.61e-26 103
MS.gene017321.t1 MTR_4g088485 48.101 79 41 0 144 222 128 206 2.22e-15 73.2
MS.gene017321.t1 MTR_4g088485 53.623 69 32 0 154 222 1 69 2.00e-14 70.5
MS.gene017321.t1 MTR_7g116360 48.101 79 41 0 144 222 67 145 2.43e-15 73.2
MS.gene017321.t1 MTR_7g116360 48.101 79 41 0 144 222 143 221 2.43e-15 73.2
MS.gene017321.t1 MTR_7g116360 53.623 69 32 0 154 222 1 69 1.94e-14 70.9
MS.gene017321.t1 MTR_1g066390 48.101 79 41 0 144 222 67 145 2.58e-15 73.2
MS.gene017321.t1 MTR_1g066390 48.101 79 41 0 144 222 143 221 2.58e-15 73.2
MS.gene017321.t1 MTR_1g066390 53.623 69 32 0 154 222 1 69 2.08e-14 70.9
MS.gene017321.t1 MTR_5g092700 53.623 69 32 0 154 222 1 69 5.24e-15 70.9
MS.gene017321.t1 MTR_4g073580 53.623 69 32 0 154 222 1 69 5.24e-15 70.9
MS.gene017321.t1 MTR_4g080920 48.101 79 41 0 144 222 67 145 5.71e-15 72.4
MS.gene017321.t1 MTR_4g080920 52.174 69 33 0 154 222 1 69 1.90e-13 68.2
MS.gene017321.t1 MTR_6g061930 48.101 79 41 0 144 222 67 145 5.88e-15 73.2
MS.gene017321.t1 MTR_6g061930 48.101 79 41 0 144 222 204 282 5.88e-15 73.2
MS.gene017321.t1 MTR_6g061930 53.623 69 32 0 154 222 1 69 4.84e-14 70.5
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 6.00e-15 72.8
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 6.00e-15 72.8
MS.gene017321.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 4.41e-14 70.5
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 67 145 6.26e-15 73.2
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 143 221 6.26e-15 73.2
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 219 297 6.26e-15 73.2
MS.gene017321.t1 MTR_4g081010 53.623 69 32 0 154 222 1 69 4.58e-14 70.9
MS.gene017321.t1 MTR_7g105080 53.623 69 32 0 154 222 1 69 8.00e-15 69.7
MS.gene017321.t1 MTR_3g092130 53.623 69 32 0 154 222 1 69 8.00e-15 69.7
MS.gene017321.t1 MTR_1g059690 53.623 69 32 0 154 222 1 69 8.00e-15 69.7
MS.gene017321.t1 MTR_7g116360 48.101 79 41 0 144 222 115 193 8.83e-15 72.4
MS.gene017321.t1 MTR_7g116360 48.101 79 41 0 144 222 191 269 8.83e-15 72.4
MS.gene017321.t1 MTR_7g116360 44.330 97 52 1 126 222 23 117 2.51e-14 71.2
MS.gene017321.t1 MTR_8g081020 48.101 79 41 0 144 222 67 145 9.17e-15 73.6
MS.gene017321.t1 MTR_8g081020 48.101 79 41 0 144 222 143 221 9.17e-15 73.6
MS.gene017321.t1 MTR_8g081020 48.101 79 41 0 144 222 219 297 9.17e-15 73.6
MS.gene017321.t1 MTR_8g081020 48.101 79 41 0 144 222 295 373 9.17e-15 73.6
MS.gene017321.t1 MTR_8g081020 53.623 69 32 0 154 222 1 69 6.34e-14 70.9
MS.gene017321.t1 MTR_4g091580 48.101 79 41 0 144 222 67 145 9.53e-15 73.6
MS.gene017321.t1 MTR_4g091580 48.101 79 41 0 144 222 143 221 9.53e-15 73.6
MS.gene017321.t1 MTR_4g091580 48.101 79 41 0 144 222 295 373 9.53e-15 73.6
MS.gene017321.t1 MTR_4g091580 48.101 79 41 0 144 222 219 297 1.27e-14 73.2
MS.gene017321.t1 MTR_4g091580 53.623 69 32 0 154 222 1 69 6.58e-14 70.9
MS.gene017321.t1 MTR_4g080797 48.101 79 41 0 144 222 67 145 1.01e-14 73.2
MS.gene017321.t1 MTR_4g080797 48.101 79 41 0 144 222 143 221 1.01e-14 73.2
MS.gene017321.t1 MTR_4g080797 48.101 79 41 0 144 222 219 297 1.01e-14 73.2
MS.gene017321.t1 MTR_4g080797 48.101 79 41 0 144 222 295 373 1.01e-14 73.2
MS.gene017321.t1 MTR_4g080797 53.623 69 32 0 154 222 1 69 6.97e-14 70.9
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 1.01e-14 73.2
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 1.01e-14 73.2
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 219 297 1.01e-14 73.2
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 295 373 1.01e-14 73.2
MS.gene017321.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 6.97e-14 70.9
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 67 145 1.05e-14 73.2
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 143 221 1.05e-14 73.2
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 219 297 1.05e-14 73.2
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 295 373 1.05e-14 73.2
MS.gene017321.t1 MTR_4g081010 53.623 69 32 0 154 222 1 69 7.17e-14 70.9
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 1.13e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 1.13e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 219 297 1.13e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 295 373 1.13e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 371 449 1.13e-14 73.6
MS.gene017321.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 7.69e-14 70.9
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 1.13e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 1.13e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 219 297 1.13e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 295 373 1.13e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 371 449 1.13e-14 73.6
MS.gene017321.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 7.69e-14 70.9
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 67 145 1.14e-14 72.4
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 143 221 1.14e-14 72.4
MS.gene017321.t1 MTR_4g081010 53.623 69 32 0 154 222 1 69 8.00e-14 69.7
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 1.24e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 1.24e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 219 297 1.24e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 295 373 1.24e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 371 449 1.24e-14 73.6
MS.gene017321.t1 MTR_8g018230 48.101 79 41 0 144 222 447 525 1.24e-14 73.6
MS.gene017321.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 8.25e-14 70.9
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 67 145 1.30e-14 73.2
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 143 221 1.30e-14 73.2
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 219 297 1.30e-14 73.2
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 295 373 1.30e-14 73.2
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 371 449 1.30e-14 73.2
MS.gene017321.t1 MTR_4g081010 48.101 79 41 0 144 222 447 525 1.30e-14 73.2
MS.gene017321.t1 MTR_4g081010 53.623 69 32 0 154 222 1 69 8.65e-14 70.9
MS.gene017321.t1 MTR_4g091580 48.101 79 41 0 144 222 67 145 1.34e-14 73.2
MS.gene017321.t1 MTR_4g091580 48.101 79 41 0 144 222 143 221 1.34e-14 73.2
MS.gene017321.t1 MTR_4g091580 48.101 79 41 0 144 222 219 297 1.34e-14 73.2
MS.gene017321.t1 MTR_4g091580 48.101 79 41 0 144 222 371 449 1.34e-14 73.2
MS.gene017321.t1 MTR_4g091580 48.101 79 41 0 144 222 447 525 1.34e-14 73.2
MS.gene017321.t1 MTR_4g091580 48.101 79 41 0 144 222 295 373 5.62e-14 71.6
MS.gene017321.t1 MTR_4g091580 53.623 69 32 0 154 222 1 69 8.89e-14 70.9
MS.gene017321.t1 MTR_4g073580 53.623 69 32 0 154 222 1 69 1.36e-14 70.5
MS.gene017321.t1 MTR_3g092130 53.623 69 32 0 154 222 1 69 1.68e-14 68.9
MS.gene017321.t1 MTR_8g088060 53.623 69 32 0 154 222 1 69 2.01e-14 69.3
MS.gene017321.t1 MTR_5g033960 53.623 69 32 0 154 222 1 69 2.32e-14 68.9
MS.gene017321.t1 MTR_4g088495 48.101 79 41 0 144 222 67 145 3.14e-14 72.4
MS.gene017321.t1 MTR_4g088495 48.101 79 41 0 144 222 143 221 3.14e-14 72.4
MS.gene017321.t1 MTR_4g088495 48.101 79 41 0 144 222 219 297 3.14e-14 72.4
MS.gene017321.t1 MTR_4g088495 48.101 79 41 0 144 222 295 373 3.14e-14 72.4
MS.gene017321.t1 MTR_4g088495 48.101 79 41 0 144 222 371 449 3.14e-14 72.4
MS.gene017321.t1 MTR_4g088495 48.101 79 41 0 144 222 447 525 3.14e-14 72.4
MS.gene017321.t1 MTR_4g088495 48.101 79 41 0 144 222 523 601 3.14e-14 72.4
MS.gene017321.t1 MTR_4g088495 48.101 79 41 0 144 222 599 677 3.14e-14 72.4
MS.gene017321.t1 MTR_4g088495 48.101 79 41 0 144 222 675 753 3.14e-14 72.4
MS.gene017321.t1 MTR_4g088495 48.101 79 41 0 144 222 751 829 3.14e-14 72.4
MS.gene017321.t1 MTR_4g088495 53.623 69 32 0 154 222 1 69 9.83e-14 70.9
MS.gene017321.t1 MTR_5g061310 45.205 73 39 1 156 227 4 76 1.41e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017321.t1 AT4G05050 48.101 79 41 0 144 222 67 145 6.67e-16 73.2
MS.gene017321.t1 AT4G05050 53.623 69 32 0 154 222 1 69 5.60e-15 70.9
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 67 145 6.67e-16 73.2
MS.gene017321.t1 AT4G05320 53.623 69 32 0 154 222 1 69 5.60e-15 70.9
MS.gene017321.t1 AT1G55060 45.977 87 47 0 136 222 59 145 1.51e-15 73.9
MS.gene017321.t1 AT1G55060 45.570 79 43 0 144 222 143 221 4.18e-13 67.4
MS.gene017321.t1 AT4G05050 48.101 79 41 0 144 222 67 145 2.54e-15 73.2
MS.gene017321.t1 AT4G05050 48.101 79 41 0 144 222 143 221 2.54e-15 73.2
MS.gene017321.t1 AT4G05050 53.623 69 32 0 154 222 1 69 2.03e-14 70.9
MS.gene017321.t1 AT4G05050 48.101 79 41 0 144 222 67 145 2.54e-15 73.2
MS.gene017321.t1 AT4G05050 48.101 79 41 0 144 222 143 221 2.54e-15 73.2
MS.gene017321.t1 AT4G05050 53.623 69 32 0 154 222 1 69 2.03e-14 70.9
MS.gene017321.t1 AT4G05050 48.101 79 41 0 144 222 67 145 2.54e-15 73.2
MS.gene017321.t1 AT4G05050 48.101 79 41 0 144 222 143 221 2.54e-15 73.2
MS.gene017321.t1 AT4G05050 53.623 69 32 0 154 222 1 69 2.03e-14 70.9
MS.gene017321.t1 AT4G02890 48.101 79 41 0 144 222 67 145 2.54e-15 73.2
MS.gene017321.t1 AT4G02890 48.101 79 41 0 144 222 143 221 2.54e-15 73.2
MS.gene017321.t1 AT4G02890 53.623 69 32 0 154 222 1 69 2.03e-14 70.9
MS.gene017321.t1 AT4G02890 48.101 79 41 0 144 222 67 145 2.54e-15 73.2
MS.gene017321.t1 AT4G02890 48.101 79 41 0 144 222 143 221 2.54e-15 73.2
MS.gene017321.t1 AT4G02890 53.623 69 32 0 154 222 1 69 2.03e-14 70.9
MS.gene017321.t1 AT5G03240 48.101 79 41 0 144 222 67 145 5.83e-15 73.6
MS.gene017321.t1 AT5G03240 48.101 79 41 0 144 222 143 221 5.83e-15 73.6
MS.gene017321.t1 AT5G03240 48.101 79 41 0 144 222 219 297 5.83e-15 73.6
MS.gene017321.t1 AT5G03240 53.623 69 32 0 154 222 1 69 4.26e-14 70.9
MS.gene017321.t1 AT5G03240 48.101 79 41 0 144 222 67 145 5.83e-15 73.6
MS.gene017321.t1 AT5G03240 48.101 79 41 0 144 222 143 221 5.83e-15 73.6
MS.gene017321.t1 AT5G03240 48.101 79 41 0 144 222 219 297 5.83e-15 73.6
MS.gene017321.t1 AT5G03240 53.623 69 32 0 154 222 1 69 4.26e-14 70.9
MS.gene017321.t1 AT5G03240 48.101 79 41 0 144 222 67 145 5.83e-15 73.6
MS.gene017321.t1 AT5G03240 48.101 79 41 0 144 222 143 221 5.83e-15 73.6
MS.gene017321.t1 AT5G03240 48.101 79 41 0 144 222 219 297 5.83e-15 73.6
MS.gene017321.t1 AT5G03240 53.623 69 32 0 154 222 1 69 4.26e-14 70.9
MS.gene017321.t1 AT5G20620 48.101 79 41 0 144 222 67 145 5.83e-15 73.6
MS.gene017321.t1 AT5G20620 48.101 79 41 0 144 222 143 221 5.83e-15 73.6
MS.gene017321.t1 AT5G20620 48.101 79 41 0 144 222 219 297 5.83e-15 73.6
MS.gene017321.t1 AT5G20620 53.623 69 32 0 154 222 1 69 4.26e-14 70.9
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 67 145 6.25e-15 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 143 221 6.25e-15 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 219 297 6.25e-15 73.2
MS.gene017321.t1 AT4G05320 53.623 69 32 0 154 222 1 69 4.57e-14 70.9
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 67 145 6.25e-15 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 143 221 6.25e-15 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 219 297 6.25e-15 73.2
MS.gene017321.t1 AT4G05320 53.623 69 32 0 154 222 1 69 4.57e-14 70.9
MS.gene017321.t1 AT4G02890 48.101 79 41 0 144 222 67 145 6.25e-15 73.2
MS.gene017321.t1 AT4G02890 48.101 79 41 0 144 222 143 221 6.25e-15 73.2
MS.gene017321.t1 AT4G02890 48.101 79 41 0 144 222 219 297 6.25e-15 73.2
MS.gene017321.t1 AT4G02890 53.623 69 32 0 154 222 1 69 4.57e-14 70.9
MS.gene017321.t1 AT4G02890 48.101 79 41 0 144 222 67 145 6.25e-15 73.2
MS.gene017321.t1 AT4G02890 48.101 79 41 0 144 222 143 221 6.25e-15 73.2
MS.gene017321.t1 AT4G02890 48.101 79 41 0 144 222 219 297 6.25e-15 73.2
MS.gene017321.t1 AT4G02890 53.623 69 32 0 154 222 1 69 4.57e-14 70.9
MS.gene017321.t1 AT2G35635 53.623 69 32 0 154 222 1 69 6.75e-15 70.5
MS.gene017321.t1 AT1G31340 53.623 69 32 0 154 222 1 69 8.14e-15 70.5
MS.gene017321.t1 AT1G65350 48.101 79 41 0 144 222 142 220 9.22e-15 73.2
MS.gene017321.t1 AT1G65350 53.623 69 32 0 154 222 1 69 4.62e-14 70.9
MS.gene017321.t1 AT1G65350 46.835 79 41 1 144 222 67 144 2.85e-12 65.9
MS.gene017321.t1 AT5G20620 48.101 79 41 0 144 222 67 145 9.65e-15 73.6
MS.gene017321.t1 AT5G20620 48.101 79 41 0 144 222 143 221 9.65e-15 73.6
MS.gene017321.t1 AT5G20620 48.101 79 41 0 144 222 219 297 9.65e-15 73.6
MS.gene017321.t1 AT5G20620 48.101 79 41 0 144 222 295 373 9.65e-15 73.6
MS.gene017321.t1 AT5G20620 53.623 69 32 0 154 222 1 69 6.79e-14 70.9
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 67 145 1.06e-14 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 143 221 1.06e-14 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 219 297 1.06e-14 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 295 373 1.06e-14 73.2
MS.gene017321.t1 AT4G05320 53.623 69 32 0 154 222 1 69 7.30e-14 70.9
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 67 145 1.06e-14 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 143 221 1.06e-14 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 219 297 1.06e-14 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 295 373 1.06e-14 73.2
MS.gene017321.t1 AT4G05320 53.623 69 32 0 154 222 1 69 7.30e-14 70.9
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 67 145 1.06e-14 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 143 221 1.06e-14 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 219 297 1.06e-14 73.2
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 295 373 1.06e-14 73.2
MS.gene017321.t1 AT4G05320 53.623 69 32 0 154 222 1 69 7.30e-14 70.9
MS.gene017321.t1 AT3G52590 53.623 69 32 0 154 222 1 69 1.07e-14 69.3
MS.gene017321.t1 AT2G36170 53.623 69 32 0 154 222 1 69 1.07e-14 69.3
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 67 145 1.18e-14 73.6
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 143 221 1.18e-14 73.6
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 219 297 1.18e-14 73.6
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 295 373 1.18e-14 73.6
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 371 449 1.18e-14 73.6
MS.gene017321.t1 AT4G05320 53.623 69 32 0 154 222 1 69 8.06e-14 70.9
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 67 145 1.18e-14 73.6
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 143 221 1.18e-14 73.6
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 219 297 1.18e-14 73.6
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 295 373 1.18e-14 73.6
MS.gene017321.t1 AT4G05320 48.101 79 41 0 144 222 371 449 1.18e-14 73.6
MS.gene017321.t1 AT4G05320 53.623 69 32 0 154 222 1 69 8.06e-14 70.9
MS.gene017321.t1 AT1G23410 53.623 69 32 0 154 222 1 69 1.62e-14 69.7
MS.gene017321.t1 AT2G47110 53.623 69 32 0 154 222 1 69 2.15e-14 69.3
MS.gene017321.t1 AT2G47110 53.623 69 32 0 154 222 1 69 2.15e-14 69.3
MS.gene017321.t1 AT3G62250 53.623 69 32 0 154 222 1 69 2.48e-14 68.9
MS.gene017321.t1 AT5G37640 46.835 79 42 0 144 222 69 147 2.77e-14 71.6
MS.gene017321.t1 AT5G37640 44.304 79 44 0 144 222 145 223 5.71e-12 65.1
MS.gene017321.t1 AT5G37640 46.250 80 42 1 144 222 221 300 1.58e-11 63.5
MS.gene017321.t1 AT5G37930 29.801 151 102 2 2 148 190 340 2.49e-13 69.3
MS.gene017321.t1 AT3G09790 46.835 79 42 0 144 222 69 147 5.08e-13 68.9
MS.gene017321.t1 AT3G09790 50.000 70 35 0 153 222 2 71 1.09e-11 64.7
MS.gene017321.t1 AT3G09790 43.478 92 42 3 144 225 459 550 5.47e-11 62.8
MS.gene017321.t1 AT3G09790 46.835 79 42 0 144 222 69 147 5.08e-13 68.9
MS.gene017321.t1 AT3G09790 50.000 70 35 0 153 222 2 71 1.09e-11 64.7
MS.gene017321.t1 AT3G09790 43.478 92 42 3 144 225 459 550 5.47e-11 62.8
MS.gene017321.t1 AT1G53930 46.479 71 38 0 156 226 88 158 2.22e-12 63.9

Find 52 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTGATTTCTTAACTCTA+AGG 0.248144 5.1:-59588983 None:intergenic
GTTCTTCAAGAGGAAAATTA+TGG 0.263266 5.1:+59588441 MS.gene017321:CDS
CTAGGCCCTTTACAAAGATT+TGG 0.273442 5.1:-59588944 None:intergenic
GCAGTCAATATTTGCTGCTT+TGG 0.307306 5.1:+59588507 MS.gene017321:CDS
GTCTCACTCCAGCGTTCTCT+TGG 0.353127 5.1:+59589140 MS.gene017321:CDS
ATCTTTGTAAAGGGCCTAGA+TGG 0.353834 5.1:+59588948 MS.gene017321:CDS
TACTCGGACTCGGGTGTGTC+TGG 0.357737 5.1:-59588531 None:intergenic
CATCTCGTCAACGGCGGAAA+AGG 0.365718 5.1:-59589227 None:intergenic
AGAAACTCTGATGAAAGATT+TGG 0.377110 5.1:-59588636 None:intergenic
ACTAATCGCCAATCGTCTTC+CGG 0.382591 5.1:-59589173 None:intergenic
AACAAAGTCACAACCTGAAA+AGG 0.402082 5.1:-59588304 None:intergenic
GGTTTCATCATTAGACTTCA+AGG 0.410456 5.1:-59588415 None:intergenic
TATAGATGTTGTAGTCGAAA+AGG 0.428331 5.1:-59589106 None:intergenic
AAAGGGTCAGGTTTCCATAT+AGG 0.437972 5.1:-59589088 None:intergenic
ATCAGACGTTGAGCGGCCAC+TGG 0.450646 5.1:-59589050 None:intergenic
GGGTCATACACTTTCCATCT+AGG 0.451359 5.1:-59588962 None:intergenic
GTCTGATTTCTTAACTCTAA+GGG 0.469256 5.1:-59588982 None:intergenic
TATTGCAAAGAATGTCCAAC+AGG 0.484330 5.1:+59588605 MS.gene017321:CDS
TCTCACTCCAGCGTTCTCTT+GGG 0.485099 5.1:+59589141 MS.gene017321:CDS
CAGATCCAAATCTTTGTAAA+GGG 0.487025 5.1:+59588939 MS.gene017321:intron
TGTTGTAGTCGAAAAGGGTC+AGG 0.487757 5.1:-59589100 None:intergenic
AGAGGTTCAGAAGAATCAAA+TGG 0.487848 5.1:-59588666 None:intergenic
CAATATATCATAACTATACT+CGG 0.493864 5.1:-59588547 None:intergenic
GCAGATCCAAATCTTTGTAA+AGG 0.495328 5.1:+59588938 MS.gene017321:intron
ATAGATGTTGTAGTCGAAAA+GGG 0.531303 5.1:-59589105 None:intergenic
TGAAACCATTGTTCTTCAAG+AGG 0.538905 5.1:+59588431 MS.gene017321:CDS
ACAAAGTCACAACCTGAAAA+GGG 0.540410 5.1:-59588303 None:intergenic
AGACTTCAAGGAGACAATGA+AGG 0.541721 5.1:-59588403 None:intergenic
CTAGACGGCCGGAAGACGAT+TGG 0.543135 5.1:+59589165 MS.gene017321:CDS
TTCTCTTGGGACTAGACGGC+CGG 0.543462 5.1:+59589154 MS.gene017321:CDS
ATGCAAATTTCTAGCTTGAG+AGG 0.547282 5.1:-59588684 None:intergenic
AGGGACAGTAACATGGCTTA+CGG 0.547857 5.1:-59588284 None:intergenic
GGTGGACAATTGTCAAATGT+TGG 0.563243 5.1:-59589200 None:intergenic
ATCATAACTATACTCGGACT+CGG 0.565356 5.1:-59588541 None:intergenic
GTCAACGGCGGAAAAGGATG+AGG 0.572483 5.1:-59589221 None:intergenic
TGCATTTCAGCGATAAACAC+GGG 0.578429 5.1:+59588349 MS.gene017321:CDS
TCATAACTATACTCGGACTC+GGG 0.578996 5.1:-59588540 None:intergenic
GATTTGGTAAAGTAACCTGT+TGG 0.586732 5.1:-59588620 None:intergenic
CCTGAAAAGGGACAGTAACA+TGG 0.591203 5.1:-59588291 None:intergenic
TCAGACGTTGAGCGGCCACT+GGG 0.601307 5.1:-59589049 None:intergenic
AACGGCGGAAAAGGATGAGG+TGG 0.604435 5.1:-59589218 None:intergenic
GTGCATTTCAGCGATAAACA+CGG 0.612101 5.1:+59588348 MS.gene017321:CDS
AGCGTTCTCTTGGGACTAGA+CGG 0.615006 5.1:+59589150 MS.gene017321:CDS
GTCTAGTCCCAAGAGAACGC+TGG 0.620661 5.1:-59589148 None:intergenic
TTGCATTCACGTAACCTCCA+CGG 0.623413 5.1:+59588701 MS.gene017321:CDS
TGAGGTGGTCATCTCGTCAA+CGG 0.624853 5.1:-59589236 None:intergenic
GCAAAAGATCAGACGTTGAG+CGG 0.628431 5.1:-59589057 None:intergenic
AAGAGAACGCTGGAGTGAGA+CGG 0.637960 5.1:-59589138 None:intergenic
GCATTTCAGCGATAAACACG+GGG 0.695447 5.1:+59588350 MS.gene017321:CDS
GGTGGTCATCTCGTCAACGG+CGG 0.713045 5.1:-59589233 None:intergenic
GGATATAGGAAATACCGTGG+AGG 0.730393 5.1:-59588715 None:intergenic
TGACAAGACTGAGATCCCAG+TGG 0.762074 5.1:+59589034 MS.gene017321:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATATTATTACTCTTTT+AGG + chr5.1:59588480-59588499 MS.gene017321:CDS 10.0%
!!! ATTTTCTTTTATTGATTTAA+TGG + chr5.1:59588905-59588924 MS.gene017321:intron 10.0%
!! CAATATATCATAACTATACT+CGG - chr5.1:59588550-59588569 None:intergenic 20.0%
!!! CTCAAATCAAATTTTCTTAT+GGG + chr5.1:59588376-59588395 MS.gene017321:CDS 20.0%
!!! TATTGATTTAATGGAAATTG+TGG + chr5.1:59588914-59588933 MS.gene017321:intron 20.0%
!!! TCTCAAATCAAATTTTCTTA+TGG + chr5.1:59588375-59588394 MS.gene017321:CDS 20.0%
! GCAAATTATCTCAAATTCAT+CGG + chr5.1:59588808-59588827 MS.gene017321:intron 25.0%
! TAAAATACCAAGATTTCACT+AGG - chr5.1:59588763-59588782 None:intergenic 25.0%
AAATAGCCAAAGCAAAGAAT+AGG - chr5.1:59588739-59588758 None:intergenic 30.0%
AGAAACTCTGATGAAAGATT+TGG - chr5.1:59588639-59588658 None:intergenic 30.0%
ATAGATGTTGTAGTCGAAAA+GGG - chr5.1:59589108-59589127 None:intergenic 30.0%
CAAAGCAAAGAATAGGATAT+AGG - chr5.1:59588732-59588751 None:intergenic 30.0%
CAGATCCAAATCTTTGTAAA+GGG + chr5.1:59588939-59588958 MS.gene017321:intron 30.0%
CTATATCCTATTCTTTGCTT+TGG + chr5.1:59588730-59588749 MS.gene017321:intron 30.0%
GTCTGATTTCTTAACTCTAA+GGG - chr5.1:59588985-59589004 None:intergenic 30.0%
GTTCTTCAAGAGGAAAATTA+TGG + chr5.1:59588441-59588460 MS.gene017321:CDS 30.0%
TATAGATGTTGTAGTCGAAA+AGG - chr5.1:59589109-59589128 None:intergenic 30.0%
TGTCTGATTTCTTAACTCTA+AGG - chr5.1:59588986-59589005 None:intergenic 30.0%
! ATTTTCCTCTTGAAGAACAA+TGG - chr5.1:59588439-59588458 None:intergenic 30.0%
! CTATTTTCCTAGTGAAATCT+TGG + chr5.1:59588753-59588772 MS.gene017321:intron 30.0%
!! GTTTTTCAAACGCCAAAAAA+CGG + chr5.1:59588830-59588849 MS.gene017321:intron 30.0%
!!! AAACACAAACAACCGTTTTT+TGG - chr5.1:59588845-59588864 None:intergenic 30.0%
AACAAAGTCACAACCTGAAA+AGG - chr5.1:59588307-59588326 None:intergenic 35.0%
ACAAAGTCACAACCTGAAAA+GGG - chr5.1:59588306-59588325 None:intergenic 35.0%
AGAGGTTCAGAAGAATCAAA+TGG - chr5.1:59588669-59588688 None:intergenic 35.0%
ATAGGATATAGGAAATACCG+TGG - chr5.1:59588721-59588740 None:intergenic 35.0%
ATCATAACTATACTCGGACT+CGG - chr5.1:59588544-59588563 None:intergenic 35.0%
GCAGATCCAAATCTTTGTAA+AGG + chr5.1:59588938-59588957 MS.gene017321:intron 35.0%
GGTTTCATCATTAGACTTCA+AGG - chr5.1:59588418-59588437 None:intergenic 35.0%
TATTGCAAAGAATGTCCAAC+AGG + chr5.1:59588605-59588624 MS.gene017321:CDS 35.0%
TGAAACCATTGTTCTTCAAG+AGG + chr5.1:59588431-59588450 MS.gene017321:CDS 35.0%
! GATTTGGTAAAGTAACCTGT+TGG - chr5.1:59588623-59588642 None:intergenic 35.0%
! TTTTGCGGTAGATACCTATA+TGG + chr5.1:59589074-59589093 MS.gene017321:CDS 35.0%
!! ATGCAAATTTCTAGCTTGAG+AGG - chr5.1:59588687-59588706 None:intergenic 35.0%
AAAGGGTCAGGTTTCCATAT+AGG - chr5.1:59589091-59589110 None:intergenic 40.0%
AGACTTCAAGGAGACAATGA+AGG - chr5.1:59588406-59588425 None:intergenic 40.0%
ATCTTTGTAAAGGGCCTAGA+TGG + chr5.1:59588948-59588967 MS.gene017321:CDS 40.0%
CTAGGCCCTTTACAAAGATT+TGG - chr5.1:59588947-59588966 None:intergenic 40.0%
GGTGGACAATTGTCAAATGT+TGG - chr5.1:59589203-59589222 None:intergenic 40.0%
GTGCATTTCAGCGATAAACA+CGG + chr5.1:59588348-59588367 MS.gene017321:CDS 40.0%
TCATAACTATACTCGGACTC+GGG - chr5.1:59588543-59588562 None:intergenic 40.0%
TGCATTTCAGCGATAAACAC+GGG + chr5.1:59588349-59588368 MS.gene017321:CDS 40.0%
! GCAGTCAATATTTGCTGCTT+TGG + chr5.1:59588507-59588526 MS.gene017321:CDS 40.0%
ACTAATCGCCAATCGTCTTC+CGG - chr5.1:59589176-59589195 None:intergenic 45.0%
AGGGACAGTAACATGGCTTA+CGG - chr5.1:59588287-59588306 None:intergenic 45.0%
CCTGAAAAGGGACAGTAACA+TGG - chr5.1:59588294-59588313 None:intergenic 45.0%
GCAAAAGATCAGACGTTGAG+CGG - chr5.1:59589060-59589079 None:intergenic 45.0%
GCATTTCAGCGATAAACACG+GGG + chr5.1:59588350-59588369 MS.gene017321:CDS 45.0%
GGATATAGGAAATACCGTGG+AGG - chr5.1:59588718-59588737 None:intergenic 45.0%
GGGTCATACACTTTCCATCT+AGG - chr5.1:59588965-59588984 None:intergenic 45.0%
TGTTGTAGTCGAAAAGGGTC+AGG - chr5.1:59589103-59589122 None:intergenic 45.0%
TTGCATTCACGTAACCTCCA+CGG + chr5.1:59588701-59588720 MS.gene017321:CDS 45.0%
! CCATGTTACTGTCCCTTTTC+AGG + chr5.1:59588291-59588310 MS.gene017321:CDS 45.0%
! GCTCAACGTCTGATCTTTTG+CGG + chr5.1:59589059-59589078 MS.gene017321:CDS 45.0%
AAGAGAACGCTGGAGTGAGA+CGG - chr5.1:59589141-59589160 None:intergenic 50.0%
AGCGTTCTCTTGGGACTAGA+CGG + chr5.1:59589150-59589169 MS.gene017321:CDS 50.0%
TCTCACTCCAGCGTTCTCTT+GGG + chr5.1:59589141-59589160 MS.gene017321:CDS 50.0%
TGACAAGACTGAGATCCCAG+TGG + chr5.1:59589034-59589053 MS.gene017321:CDS 50.0%
AACGGCGGAAAAGGATGAGG+TGG - chr5.1:59589221-59589240 None:intergenic 55.0%
CATCTCGTCAACGGCGGAAA+AGG - chr5.1:59589230-59589249 None:intergenic 55.0%
GTCAACGGCGGAAAAGGATG+AGG - chr5.1:59589224-59589243 None:intergenic 55.0%
GTCTAGTCCCAAGAGAACGC+TGG - chr5.1:59589151-59589170 None:intergenic 55.0%
GTCTCACTCCAGCGTTCTCT+TGG + chr5.1:59589140-59589159 MS.gene017321:CDS 55.0%
TTCTCTTGGGACTAGACGGC+CGG + chr5.1:59589154-59589173 MS.gene017321:CDS 55.0%
ATCAGACGTTGAGCGGCCAC+TGG - chr5.1:59589053-59589072 None:intergenic 60.0%
CTAGACGGCCGGAAGACGAT+TGG + chr5.1:59589165-59589184 MS.gene017321:CDS 60.0%
TACTCGGACTCGGGTGTGTC+TGG - chr5.1:59588534-59588553 None:intergenic 60.0%
TCAGACGTTGAGCGGCCACT+GGG - chr5.1:59589052-59589071 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 59588264 59589250 59588264 ID=MS.gene017321
chr5.1 mRNA 59588264 59589250 59588264 ID=MS.gene017321.t1;Parent=MS.gene017321
chr5.1 exon 59588264 59588722 59588264 ID=MS.gene017321.t1.exon1;Parent=MS.gene017321.t1
chr5.1 CDS 59588264 59588722 59588264 ID=cds.MS.gene017321.t1;Parent=MS.gene017321.t1
chr5.1 exon 59588942 59589250 59588942 ID=MS.gene017321.t1.exon2;Parent=MS.gene017321.t1
chr5.1 CDS 59588942 59589250 59588942 ID=cds.MS.gene017321.t1;Parent=MS.gene017321.t1
Gene Sequence

>MS.gene017321

ATGCATGAAGAACAATGCATCCGTAAGCCATGTTACTGTCCCTTTTCAGGTTGTGACTTTGTTCAATCATCAAACATGTTTTCTGTGCATTTCAGCGATAAACACGGGGATTCTCAAATCAAATTTTCTTATGGGAAATCCTTCATTGTCTCCTTGAAGTCTAATGATGAAACCATTGTTCTTCAAGAGGAAAATTATGGCAAACTCTTTACTCTCAATAATATTATTACTCTTTTAGGAAATGCAGTCAATATTTGCTGCTTTGGTCCAGACACACCCGAGTCCGAGTATAGTTATGATATATTGTCTACGTCTCAGTTATGCAAATTGAAATTACAATCTATTGCAAAGAATGTCCAACAGGTTACTTTACCAAATCTTTCATCAGAGTTTCTTGTGATTCCATTTGATTCTTCTGAACCTCTCAAGCTAGAAATTTGCATTCACGTAACCTCCACGGTATTTCCTATATCCTATTCTTTGCTTTGGCTATTTTCCTAGTGAAATCTTGGTATTTTATTTTATGTTTTGAATTTATACTCTAGCAAATTATCTCAAATTCATCGGTTTTTCAAACGCCAAAAAACGGTTGTTTGTGTTTTCTATTTTTTGATAAATTCTTGAAGTATCATAAGTCTCAAATTTTCTTTTATTGATTTAATGGAAATTGTGGTGCAGATCCAAATCTTTGTAAAGGGCCTAGATGGAAAGTGTATGACCCTTAGAGTTAAGAAATCAGACAAGTTAGACAAACTTAAAGAGATGATTCATGACAAGACTGAGATCCCAGTGGCCGCTCAACGTCTGATCTTTTGCGGTAGATACCTATATGGAAACCTGACCCTTTTCGACTACAACATCTATAACGAATCAACCGTCTCACTCCAGCGTTCTCTTGGGACTAGACGGCCGGAAGACGATTGGCGATTAGTACATCCAACATTTGACAATTGTCCACCTCATCCTTTTCCGCCGTTGACGAGATGA

Protein sequence

>MS.gene017321.t1

MHEEQCIRKPCYCPFSGCDFVQSSNMFSVHFSDKHGDSQIKFSYGKSFIVSLKSNDETIVLQEENYGKLFTLNNIITLLGNAVNICCFGPDTPESEYSYDILSTSQLCKLKLQSIAKNVQQVTLPNLSSEFLVIPFDSSEPLKLEICIHVTSTIQIFVKGLDGKCMTLRVKKSDKLDKLKEMIHDKTEIPVAAQRLIFCGRYLYGNLTLFDYNIYNESTVSLQRSLGTRRPEDDWRLVHPTFDNCPPHPFPPLTR