Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025074.t1 | AES65368.1 | 63.2 | 277 | 38 | 2 | 1 | 213 | 1 | 277 | 3.90E-86 | 327.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025074.t1 | Q84K34 | 38.8 | 160 | 98 | 0 | 11 | 170 | 96 | 255 | 1.5e-33 | 144.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025074.t1 | G7IIC5 | 63.2 | 277 | 38 | 2 | 1 | 213 | 1 | 277 | 2.8e-86 | 327.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025074.t1 | MTR_2g038420 | 62.454 | 269 | 47 | 2 | 1 | 215 | 1 | 269 | 2.28e-105 | 307 |
MS.gene025074.t1 | MTR_2g038430 | 84.000 | 175 | 28 | 0 | 1 | 175 | 1 | 175 | 8.25e-104 | 303 |
MS.gene025074.t1 | MTR_5g076660 | 57.087 | 254 | 54 | 2 | 2 | 200 | 10 | 263 | 8.04e-88 | 263 |
MS.gene025074.t1 | MTR_5g067400 | 57.447 | 235 | 48 | 1 | 18 | 200 | 4 | 238 | 5.16e-84 | 252 |
MS.gene025074.t1 | MTR_7g024290 | 57.143 | 238 | 50 | 1 | 18 | 203 | 4 | 241 | 1.82e-81 | 246 |
MS.gene025074.t1 | MTR_1g046650 | 55.918 | 245 | 55 | 2 | 11 | 203 | 28 | 271 | 2.32e-81 | 246 |
MS.gene025074.t1 | MTR_1g046650 | 56.485 | 239 | 51 | 2 | 17 | 203 | 3 | 240 | 2.37e-81 | 245 |
MS.gene025074.t1 | MTR_5g076720 | 53.333 | 255 | 67 | 1 | 2 | 204 | 59 | 313 | 3.42e-80 | 245 |
MS.gene025074.t1 | MTR_7g094390 | 52.988 | 251 | 66 | 1 | 2 | 200 | 149 | 399 | 3.57e-77 | 240 |
MS.gene025074.t1 | MTR_5g076370 | 53.725 | 255 | 62 | 3 | 2 | 200 | 10 | 264 | 4.34e-77 | 235 |
MS.gene025074.t1 | MTR_1g046640 | 54.894 | 235 | 53 | 2 | 18 | 200 | 4 | 237 | 3.24e-76 | 232 |
MS.gene025074.t1 | MTR_5g061290 | 51.220 | 246 | 64 | 4 | 12 | 204 | 5 | 247 | 1.79e-73 | 226 |
MS.gene025074.t1 | MTR_1g046650 | 55.556 | 216 | 43 | 2 | 40 | 203 | 26 | 240 | 4.31e-70 | 217 |
MS.gene025074.t1 | MTR_5g076520 | 50.213 | 235 | 65 | 1 | 18 | 200 | 4 | 238 | 6.48e-65 | 204 |
MS.gene025074.t1 | MTR_5g076540 | 65.190 | 158 | 55 | 0 | 18 | 175 | 4 | 161 | 9.07e-65 | 201 |
MS.gene025074.t1 | MTR_5g076820 | 49.558 | 226 | 61 | 2 | 31 | 204 | 25 | 249 | 6.24e-64 | 200 |
MS.gene025074.t1 | MTR_5g076505 | 48.611 | 216 | 59 | 1 | 41 | 204 | 23 | 238 | 6.39e-58 | 186 |
MS.gene025074.t1 | MTR_5g076810 | 52.105 | 190 | 39 | 1 | 63 | 200 | 2 | 191 | 1.20e-54 | 176 |
MS.gene025074.t1 | MTR_4g094468 | 50.307 | 163 | 79 | 1 | 9 | 171 | 83 | 243 | 5.50e-50 | 166 |
MS.gene025074.t1 | MTR_1g046650 | 51.163 | 172 | 31 | 2 | 84 | 203 | 1 | 171 | 2.18e-46 | 154 |
MS.gene025074.t1 | MTR_4g058025 | 70.000 | 90 | 24 | 2 | 95 | 181 | 14 | 103 | 1.28e-33 | 119 |
MS.gene025074.t1 | MTR_5g077020 | 55.000 | 120 | 40 | 4 | 72 | 181 | 22 | 137 | 1.00e-32 | 118 |
MS.gene025074.t1 | MTR_7g085590 | 32.653 | 147 | 88 | 2 | 30 | 176 | 68 | 203 | 3.24e-22 | 92.4 |
MS.gene025074.t1 | MTR_1g054335 | 32.812 | 128 | 83 | 2 | 30 | 154 | 63 | 190 | 9.56e-20 | 85.9 |
MS.gene025074.t1 | MTR_3g091510 | 33.594 | 128 | 82 | 2 | 30 | 154 | 65 | 192 | 4.34e-19 | 84.3 |
MS.gene025074.t1 | MTR_3g017590 | 30.469 | 128 | 86 | 2 | 30 | 154 | 58 | 185 | 1.91e-18 | 82.4 |
MS.gene025074.t1 | MTR_7g093600 | 31.746 | 126 | 83 | 2 | 30 | 152 | 64 | 189 | 3.25e-18 | 81.6 |
MS.gene025074.t1 | MTR_1g008120 | 32.812 | 128 | 83 | 2 | 30 | 154 | 73 | 200 | 5.09e-18 | 81.6 |
MS.gene025074.t1 | MTR_8g027520 | 32.812 | 128 | 83 | 2 | 30 | 154 | 58 | 185 | 9.72e-18 | 80.5 |
MS.gene025074.t1 | MTR_8g027520 | 32.812 | 128 | 83 | 2 | 30 | 154 | 49 | 176 | 1.01e-17 | 80.5 |
MS.gene025074.t1 | MTR_8g038370 | 32.090 | 134 | 88 | 2 | 30 | 160 | 117 | 250 | 1.17e-17 | 80.9 |
MS.gene025074.t1 | MTR_7g117415 | 31.343 | 134 | 89 | 2 | 30 | 160 | 66 | 199 | 1.86e-16 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025074.t1 | AT5G37930 | 35.583 | 163 | 105 | 0 | 18 | 180 | 103 | 265 | 6.69e-37 | 132 |
MS.gene025074.t1 | AT5G37890 | 42.857 | 140 | 77 | 2 | 5 | 143 | 30 | 167 | 1.90e-36 | 129 |
MS.gene025074.t1 | AT5G37870 | 35.714 | 168 | 105 | 2 | 5 | 171 | 24 | 189 | 4.18e-34 | 123 |
MS.gene025074.t1 | AT5G37910 | 33.333 | 177 | 112 | 2 | 5 | 177 | 15 | 189 | 1.25e-32 | 119 |
MS.gene025074.t1 | AT1G66620 | 37.589 | 141 | 88 | 0 | 25 | 165 | 41 | 181 | 1.36e-29 | 112 |
MS.gene025074.t1 | AT1G66650 | 31.925 | 213 | 131 | 5 | 13 | 213 | 71 | 281 | 1.12e-28 | 110 |
MS.gene025074.t1 | AT1G66630 | 35.897 | 156 | 95 | 2 | 25 | 175 | 46 | 201 | 1.45e-27 | 107 |
MS.gene025074.t1 | AT1G66660 | 42.276 | 123 | 71 | 0 | 11 | 133 | 89 | 211 | 7.18e-27 | 105 |
MS.gene025074.t1 | AT5G62800 | 36.585 | 164 | 99 | 3 | 8 | 166 | 23 | 186 | 1.32e-26 | 104 |
MS.gene025074.t1 | AT5G62800 | 36.585 | 164 | 99 | 3 | 8 | 166 | 23 | 186 | 1.91e-26 | 104 |
MS.gene025074.t1 | AT3G61790 | 32.031 | 128 | 84 | 2 | 30 | 154 | 65 | 192 | 1.13e-17 | 80.5 |
MS.gene025074.t1 | AT4G27880 | 32.812 | 128 | 83 | 2 | 30 | 154 | 66 | 193 | 1.18e-17 | 80.5 |
MS.gene025074.t1 | AT3G58040 | 31.250 | 128 | 85 | 2 | 30 | 154 | 62 | 189 | 5.01e-17 | 77.0 |
MS.gene025074.t1 | AT3G58040 | 31.250 | 128 | 85 | 2 | 30 | 154 | 62 | 189 | 9.10e-17 | 77.8 |
MS.gene025074.t1 | AT3G58040 | 31.250 | 128 | 85 | 2 | 30 | 154 | 62 | 189 | 9.10e-17 | 77.8 |
MS.gene025074.t1 | AT2G41980 | 30.469 | 128 | 86 | 2 | 30 | 154 | 59 | 186 | 2.15e-16 | 76.6 |
MS.gene025074.t1 | AT1G66610 | 25.926 | 216 | 95 | 5 | 25 | 175 | 53 | 268 | 2.75e-15 | 73.9 |
MS.gene025074.t1 | AT1G66660 | 44.444 | 63 | 35 | 0 | 71 | 133 | 25 | 87 | 6.90e-13 | 65.9 |
MS.gene025074.t1 | AT1G66610 | 48.276 | 58 | 30 | 0 | 30 | 87 | 58 | 115 | 1.83e-11 | 62.0 |
MS.gene025074.t1 | AT1G66610 | 41.667 | 72 | 42 | 0 | 20 | 91 | 153 | 224 | 1.92e-11 | 62.0 |
Find 37 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTAAGCATTCCAATCTTTC+AGG | 0.147128 | 2.4:-50994051 | MS.gene025074:intron |
ATGCAGCGGTCGAACACTTT+AGG | 0.237355 | 2.4:+50994086 | None:intergenic |
TGCAGCGGTCGAACACTTTA+GGG | 0.309072 | 2.4:+50994087 | None:intergenic |
CTTGAAATTCAGTGTGATAA+TGG | 0.310820 | 2.4:-50993153 | MS.gene025074:intron |
GTTCTTCAAGAGGAATATAA+TGG | 0.366230 | 2.4:-50992778 | MS.gene025074:CDS |
TTTGAGAAACCTCGTGTCTA+TGG | 0.373925 | 2.4:+50992860 | None:intergenic |
TACTTCATCATCAGACTTCA+AGG | 0.378332 | 2.4:+50992804 | None:intergenic |
ACTTTAGCAACTCTTTCGTC+AGG | 0.389105 | 2.4:-50992556 | MS.gene025074:CDS |
TCTACCTGCTGTTCTAAGCT+TGG | 0.390487 | 2.4:-50993117 | MS.gene025074:CDS |
AACAAAGTCACAACCTGAAA+GGG | 0.398528 | 2.4:+50992915 | None:intergenic |
CCTCGTGTCTATGGCTGAAA+TGG | 0.407144 | 2.4:+50992869 | None:intergenic |
CTACCTGCTGTTCTAAGCTT+GGG | 0.413153 | 2.4:-50993116 | MS.gene025074:CDS |
GAAATGCATACCTGAAAGAT+TGG | 0.427437 | 2.4:+50994041 | None:intergenic |
AAAGTGACTGTCGTTCCATC+CGG | 0.438488 | 2.4:+50992212 | None:intergenic |
GACAGTCACTTTGGAGGTTA+AGG | 0.439133 | 2.4:-50992201 | None:intergenic |
AGAGGTTCAGAAGAACCAAT+TGG | 0.443596 | 2.4:+50992520 | None:intergenic |
GGGTTCCTTATGATTCCAAT+TGG | 0.445550 | 2.4:-50992535 | MS.gene025074:CDS |
AAGAACCAATTGGAATCATA+AGG | 0.466724 | 2.4:+50992530 | None:intergenic |
GTTCCCAAGCTTAGAACAGC+AGG | 0.520048 | 2.4:+50993113 | None:intergenic |
GGATGGAACGACAGTCACTT+TGG | 0.529766 | 2.4:-50992210 | MS.gene025074:CDS |
TGAAGTAATTGTTCTTCAAG+AGG | 0.534785 | 2.4:-50992788 | MS.gene025074:CDS |
CAACAAAGTCACAACCTGAA+AGG | 0.543438 | 2.4:+50992914 | None:intergenic |
ACAAAGTCACAACCTGAAAG+GGG | 0.544300 | 2.4:+50992916 | None:intergenic |
ATGCGAATTTCTAGCTTGAG+AGG | 0.545488 | 2.4:+50992502 | None:intergenic |
GCAAATCTTCGTAAAGGTCC+CGG | 0.552503 | 2.4:-50992231 | MS.gene025074:CDS |
CTTTAGCAACTCTTTCGTCA+GGG | 0.553042 | 2.4:-50992555 | MS.gene025074:CDS |
GTTCGAAATCATCAGAGAAA+CGG | 0.557177 | 2.4:+50994109 | None:intergenic |
TGGAACGACAGTCACTTTGG+AGG | 0.569185 | 2.4:-50992207 | MS.gene025074:CDS |
AAGTGACTGTCGTTCCATCC+GGG | 0.572540 | 2.4:+50992213 | None:intergenic |
GTGTCTATGGCTGAAATGGT+TGG | 0.582026 | 2.4:+50992873 | None:intergenic |
GCAGATGCAAATCTTCGTAA+AGG | 0.583336 | 2.4:-50992237 | MS.gene025074:intron |
ATCTTCGTAAAGGTCCCGGA+TGG | 0.617302 | 2.4:-50992227 | MS.gene025074:CDS |
CATAACTCGCACAATTCCTA+CGG | 0.621510 | 2.4:-50992482 | MS.gene025074:intron |
CCATTTCAGCCATAGACACG+AGG | 0.628014 | 2.4:-50992869 | MS.gene025074:CDS |
GTTGGACAACACTTCTGATG+AGG | 0.646668 | 2.4:+50992891 | None:intergenic |
CAAAGTCACAACCTGAAAGG+GGG | 0.669033 | 2.4:+50992917 | None:intergenic |
AGAGTTGAAAACAAATGCAG+CGG | 0.674564 | 2.4:+50994072 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACATCATTTTTTTTTTTTTT+GGG | + | chr2.4:50992971-50992990 | None:intergenic | 10.0% |
!!! | TACATCATTTTTTTTTTTTT+TGG | + | chr2.4:50992972-50992991 | None:intergenic | 10.0% |
!! | AAATTATCCTTATTAACTAT+TGG | - | chr2.4:50992523-50992542 | MS.gene025074:CDS | 15.0% |
!! | AATAGTTAATAAGGATAATT+TGG | + | chr2.4:50992524-50992543 | None:intergenic | 15.0% |
!! | TGAGATGATTATATTTATAA+TGG | - | chr2.4:50993080-50993099 | MS.gene025074:CDS | 15.0% |
!!! | ATACTTTTTTTTTTTGAAGA+AGG | + | chr2.4:50992380-50992399 | None:intergenic | 15.0% |
!!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr2.4:50992547-50992566 | MS.gene025074:CDS | 15.0% |
!! | AAACTAACCAATAGTTAATA+AGG | + | chr2.4:50992533-50992552 | None:intergenic | 20.0% |
!! | AATGATTAAAAGAAAGAGAA+TGG | - | chr2.4:50992490-50992509 | MS.gene025074:CDS | 20.0% |
!! | AGAAAAAGTTATTATTGCAT+TGG | - | chr2.4:50992610-50992629 | MS.gene025074:intron | 20.0% |
!! | CTAGAGTAAAATAAAATAAG+AGG | + | chr2.4:50993151-50993170 | None:intergenic | 20.0% |
!! | GAAAATAACAAGACTTTAAT+AGG | + | chr2.4:50993936-50993955 | None:intergenic | 20.0% |
!! | TCAAATAGTGATTCTATTTA+AGG | - | chr2.4:50992831-50992850 | MS.gene025074:CDS | 20.0% |
!!! | AATTATAGTACTATGCTTTT+GGG | - | chr2.4:50993649-50993668 | MS.gene025074:intron | 20.0% |
!!! | GAGTTATTTTGATCATTTTA+GGG | - | chr2.4:50992885-50992904 | MS.gene025074:CDS | 20.0% |
!!! | TAATTATAGTACTATGCTTT+TGG | - | chr2.4:50993648-50993667 | MS.gene025074:intron | 20.0% |
!!! | TATTGATTTAATGTCAATTG+TGG | - | chr2.4:50994094-50994113 | MS.gene025074:CDS | 20.0% |
!!! | TCTCAAATCAAATTTTCTTA+TGG | - | chr2.4:50993511-50993530 | MS.gene025074:intron | 20.0% |
!!! | TGAGTTATTTTGATCATTTT+AGG | - | chr2.4:50992884-50992903 | MS.gene025074:CDS | 20.0% |
!!! | TTTTGTCTATTTTAAATGCT+TGG | - | chr2.4:50992860-50992879 | MS.gene025074:CDS | 20.0% |
! | AAATAAGAGGTTTCTTTGTA+AGG | + | chr2.4:50993138-50993157 | None:intergenic | 25.0% |
! | AGGGTATAGTTATGATATAT+CGG | - | chr2.4:50993717-50993736 | MS.gene025074:intron | 25.0% |
! | GATGAATAAGTTATAGTAAG+TGG | - | chr2.4:50992806-50992825 | MS.gene025074:CDS | 25.0% |
!! | TTGCAACCATATTTTTCATT+CGG | + | chr2.4:50993352-50993371 | None:intergenic | 25.0% |
AAGAACCAATTGGAATCATA+AGG | + | chr2.4:50993828-50993847 | None:intergenic | 30.0% | |
ATGAACATGCAGAATAAATG+AGG | - | chr2.4:50992750-50992769 | MS.gene025074:intron | 30.0% | |
CAAAGCAAAGAAAAGTAAAC+AGG | + | chr2.4:50993904-50993923 | None:intergenic | 30.0% | |
CTTGAAATTCAGTGTGATAA+TGG | - | chr2.4:50993202-50993221 | MS.gene025074:intron | 30.0% | |
GAATGAAAAATATGGTTGCA+AGG | - | chr2.4:50993351-50993370 | MS.gene025074:intron | 30.0% | |
GTTCTTCAAGAGGAATATAA+TGG | - | chr2.4:50993577-50993596 | MS.gene025074:intron | 30.0% | |
TGAAGTAATTGTTCTTCAAG+AGG | - | chr2.4:50993567-50993586 | MS.gene025074:intron | 30.0% | |
! | AACACTAACAACCTTAGTTT+TGG | + | chr2.4:50994018-50994037 | None:intergenic | 30.0% |
! | GCAGTCAATATTTACTGTTT+TGG | - | chr2.4:50993676-50993695 | MS.gene025074:intron | 30.0% |
! | TGCAACCATATTTTTCATTC+GGG | + | chr2.4:50993351-50993370 | None:intergenic | 30.0% |
! | TTTTTCACATGCCAAAACTA+AGG | - | chr2.4:50994004-50994023 | MS.gene025074:intron | 30.0% |
!! | AAACGACACTCATTTTGAAA+CGG | + | chr2.4:50992441-50992460 | None:intergenic | 30.0% |
AACAAAGTCACAACCTGAAA+GGG | + | chr2.4:50993443-50993462 | None:intergenic | 35.0% | |
AGAGTTGAAAACAAATGCAG+CGG | + | chr2.4:50992286-50992305 | None:intergenic | 35.0% | |
AGCAAAGAAAAGTAAACAGG+CGG | + | chr2.4:50993901-50993920 | None:intergenic | 35.0% | |
ATCAAAATCCATGTAGTCAG+TGG | + | chr2.4:50993049-50993068 | None:intergenic | 35.0% | |
CTTAAGCATTCCAATCTTTC+AGG | - | chr2.4:50992304-50992323 | MS.gene025074:intron | 35.0% | |
GAAATGCATACCTGAAAGAT+TGG | + | chr2.4:50992317-50992336 | None:intergenic | 35.0% | |
GAGGCATAGTAGTGAAAATA+GGG | - | chr2.4:50992769-50992788 | MS.gene025074:intron | 35.0% | |
GTTCGAAATCATCAGAGAAA+CGG | + | chr2.4:50992249-50992268 | None:intergenic | 35.0% | |
TACTTCATCATCAGACTTCA+AGG | + | chr2.4:50993554-50993573 | None:intergenic | 35.0% | |
TGAGGCATAGTAGTGAAAAT+AGG | - | chr2.4:50992768-50992787 | MS.gene025074:intron | 35.0% | |
! | ACATCTTTTGCTGAATCAAC+AGG | + | chr2.4:50992212-50992231 | None:intergenic | 35.0% |
! | GTAGTGTCCAGAGTATTAAT+TGG | - | chr2.4:50992572-50992591 | MS.gene025074:intron | 35.0% |
! | GTCATACAGCTATAGTGTTT+TGG | - | chr2.4:50993002-50993021 | MS.gene025074:CDS | 35.0% |
! | TGTCCAGAGTATTAATTGGA+GGG | - | chr2.4:50992576-50992595 | MS.gene025074:intron | 35.0% |
!! | AAGCGACACTCATTTTGAAA+CGG | - | chr2.4:50992676-50992695 | MS.gene025074:intron | 35.0% |
ACAAAGTCACAACCTGAAAG+GGG | + | chr2.4:50993442-50993461 | None:intergenic | 40.0% | |
ACTTTAGCAACTCTTTCGTC+AGG | - | chr2.4:50993799-50993818 | MS.gene025074:intron | 40.0% | |
AGAGGTTCAGAAGAACCAAT+TGG | + | chr2.4:50993838-50993857 | None:intergenic | 40.0% | |
CAACAAAGTCACAACCTGAA+AGG | + | chr2.4:50993444-50993463 | None:intergenic | 40.0% | |
CATAACTCGCACAATTCCTA+CGG | - | chr2.4:50993873-50993892 | MS.gene025074:intron | 40.0% | |
CCATGCCCGAATGAAAAATA+TGG | - | chr2.4:50993343-50993362 | MS.gene025074:intron | 40.0% | |
CTTTAGCAACTCTTTCGTCA+GGG | - | chr2.4:50993800-50993819 | MS.gene025074:intron | 40.0% | |
GCAGATGCAAATCTTCGTAA+AGG | - | chr2.4:50994118-50994137 | MS.gene025074:CDS | 40.0% | |
GGGTTCCTTATGATTCCAAT+TGG | - | chr2.4:50993820-50993839 | MS.gene025074:intron | 40.0% | |
GTACCCTCCAATTAATACTC+TGG | + | chr2.4:50992582-50992601 | None:intergenic | 40.0% | |
TTATAGTCAACAGTGTCACG+TGG | - | chr2.4:50992712-50992731 | MS.gene025074:intron | 40.0% | |
TTTGAGAAACCTCGTGTCTA+TGG | + | chr2.4:50993498-50993517 | None:intergenic | 40.0% | |
! | CCATATTTTTCATTCGGGCA+TGG | + | chr2.4:50993346-50993365 | None:intergenic | 40.0% |
! | GTGTCCAGAGTATTAATTGG+AGG | - | chr2.4:50992575-50992594 | MS.gene025074:intron | 40.0% |
!! | ATGCGAATTTCTAGCTTGAG+AGG | + | chr2.4:50993856-50993875 | None:intergenic | 40.0% |
!!! | GACACTCATTTTGAAACGGA+GGG | - | chr2.4:50992680-50992699 | MS.gene025074:intron | 40.0% |
!!! | GACACTCATTTTGAAACGGA+GGG | + | chr2.4:50992699-50992680 | None:intergenic | 40.0% |
AAAGTGACTGTCGTTCCATC+CGG | + | chr2.4:50994146-50994165 | None:intergenic | 45.0% | |
CAAAGTCACAACCTGAAAGG+GGG | + | chr2.4:50993441-50993460 | None:intergenic | 45.0% | |
GAGTTGCTAAAGTAACTCGC+TGG | + | chr2.4:50993792-50993811 | None:intergenic | 45.0% | |
GCAAATCTTCGTAAAGGTCC+CGG | - | chr2.4:50994124-50994143 | MS.gene025074:CDS | 45.0% | |
GTCCAAATGCTTCTGAGTCA+GGG | - | chr2.4:50993698-50993717 | MS.gene025074:intron | 45.0% | |
GTGTCTATGGCTGAAATGGT+TGG | + | chr2.4:50993485-50993504 | None:intergenic | 45.0% | |
GTTGGACAACACTTCTGATG+AGG | + | chr2.4:50993467-50993486 | None:intergenic | 45.0% | |
! | CTACCTGCTGTTCTAAGCTT+GGG | - | chr2.4:50993239-50993258 | MS.gene025074:intron | 45.0% |
! | TCTACCTGCTGTTCTAAGCT+TGG | - | chr2.4:50993238-50993257 | MS.gene025074:intron | 45.0% |
!! | AACGGAGGGAGTATCATTCA+AGG | + | chr2.4:50992423-50992442 | None:intergenic | 45.0% |
!! | ACGGAGGGAGTATCATTCAA+GGG | + | chr2.4:50992422-50992441 | None:intergenic | 45.0% |
!! | TACCCTGACTCAGAAGCATT+TGG | + | chr2.4:50993703-50993722 | None:intergenic | 45.0% |
!!! | CGACACTCATTTTGAAACGG+AGG | - | chr2.4:50992679-50992698 | MS.gene025074:intron | 45.0% |
!!! | CGACACTCATTTTGAAACGG+AGG | + | chr2.4:50992698-50992679 | None:intergenic | 45.0% |
!!! | TTTTCTATTTTTTTTTTTTT+TGG | - | chr2.4:50994036-50994055 | MS.gene025074:intron | 5.0% |
AAGTAAACAGGCGGTACCGT+AGG | + | chr2.4:50993892-50993911 | None:intergenic | 50.0% | |
AAGTGACTGTCGTTCCATCC+GGG | + | chr2.4:50994145-50994164 | None:intergenic | 50.0% | |
ATCTTCGTAAAGGTCCCGGA+TGG | - | chr2.4:50994128-50994147 | MS.gene025074:CDS | 50.0% | |
ATGCAGCGGTCGAACACTTT+AGG | + | chr2.4:50992272-50992291 | None:intergenic | 50.0% | |
CCATTTCAGCCATAGACACG+AGG | - | chr2.4:50993486-50993505 | MS.gene025074:intron | 50.0% | |
CCTCGTGTCTATGGCTGAAA+TGG | + | chr2.4:50993489-50993508 | None:intergenic | 50.0% | |
CCTGAAAGGGGGCAATAACA+AGG | + | chr2.4:50993430-50993449 | None:intergenic | 50.0% | |
GGATGGAACGACAGTCACTT+TGG | - | chr2.4:50994145-50994164 | MS.gene025074:CDS | 50.0% | |
GGTCCAAATGCTTCTGAGTC+AGG | - | chr2.4:50993697-50993716 | MS.gene025074:intron | 50.0% | |
GTTCCCAAGCTTAGAACAGC+AGG | + | chr2.4:50993245-50993264 | None:intergenic | 50.0% | |
TCAACAGTGTCACGTGGCAT+AGG | - | chr2.4:50992718-50992737 | MS.gene025074:intron | 50.0% | |
TGCAGCGGTCGAACACTTTA+GGG | + | chr2.4:50992271-50992290 | None:intergenic | 50.0% | |
! | GCATTCAGCCACTGACTACA+TGG | - | chr2.4:50993038-50993057 | MS.gene025074:CDS | 50.0% |
! | TGGAACGACAGTCACTTTGG+AGG | - | chr2.4:50994148-50994167 | MS.gene025074:CDS | 50.0% |
!! | CCTTGTTATTGCCCCCTTTC+AGG | - | chr2.4:50993427-50993446 | MS.gene025074:intron | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 50992203 | 50994174 | 50992203 | ID=MS.gene025074 |
chr2.4 | mRNA | 50992203 | 50994174 | 50992203 | ID=MS.gene025074.t1;Parent=MS.gene025074 |
chr2.4 | exon | 50994052 | 50994174 | 50994052 | ID=MS.gene025074.t1.exon1;Parent=MS.gene025074.t1 |
chr2.4 | CDS | 50994052 | 50994174 | 50994052 | ID=cds.MS.gene025074.t1;Parent=MS.gene025074.t1 |
chr2.4 | exon | 50992774 | 50993163 | 50992774 | ID=MS.gene025074.t1.exon2;Parent=MS.gene025074.t1 |
chr2.4 | CDS | 50992774 | 50993163 | 50992774 | ID=cds.MS.gene025074.t1;Parent=MS.gene025074.t1 |
chr2.4 | exon | 50992483 | 50992584 | 50992483 | ID=MS.gene025074.t1.exon3;Parent=MS.gene025074.t1 |
chr2.4 | CDS | 50992483 | 50992584 | 50992483 | ID=cds.MS.gene025074.t1;Parent=MS.gene025074.t1 |
chr2.4 | exon | 50992431 | 50992434 | 50992431 | ID=MS.gene025074.t1.exon4;Parent=MS.gene025074.t1 |
chr2.4 | CDS | 50992431 | 50992434 | 50992431 | ID=cds.MS.gene025074.t1;Parent=MS.gene025074.t1 |
chr2.4 | exon | 50992203 | 50992255 | 50992203 | ID=MS.gene025074.t1.exon5;Parent=MS.gene025074.t1 |
chr2.4 | CDS | 50992203 | 50992255 | 50992203 | ID=cds.MS.gene025074.t1;Parent=MS.gene025074.t1 |
Gene Sequence |
Protein sequence |