AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063584


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063584.t1 MTR_1g046640 60.680 206 80 1 16 221 105 309 1.96e-82 249
MS.gene063584.t1 MTR_5g076810 60.386 207 80 2 16 221 59 264 8.80e-82 245
MS.gene063584.t1 MTR_5g076660 63.636 209 72 2 16 221 128 335 3.88e-81 246
MS.gene063584.t1 MTR_5g067400 60.680 206 80 1 16 221 106 310 8.48e-80 242
MS.gene063584.t1 MTR_1g046650 57.767 206 86 1 16 221 36 240 3.57e-76 230
MS.gene063584.t1 MTR_5g076370 59.330 209 81 2 16 221 129 336 1.56e-75 232
MS.gene063584.t1 MTR_1g046650 57.767 206 86 1 16 221 105 309 2.77e-75 230
MS.gene063584.t1 MTR_1g046650 57.767 206 86 1 16 221 105 309 3.37e-75 230
MS.gene063584.t1 MTR_1g046650 57.767 206 86 1 16 221 136 340 1.04e-74 230
MS.gene063584.t1 MTR_7g024290 58.454 207 84 2 16 221 106 311 1.52e-74 229
MS.gene063584.t1 MTR_7g094390 57.746 213 85 2 15 223 266 477 1.22e-73 231
MS.gene063584.t1 MTR_5g061290 54.976 211 89 2 16 221 112 321 2.15e-71 221
MS.gene063584.t1 MTR_2g038430 53.704 216 86 3 16 218 120 334 1.07e-67 212
MS.gene063584.t1 MTR_5g076520 56.459 209 86 3 16 220 106 313 7.80e-67 209
MS.gene063584.t1 MTR_2g038420 55.924 211 87 3 16 221 120 329 6.18e-66 207
MS.gene063584.t1 MTR_5g076720 52.632 209 95 2 16 221 177 384 1.96e-62 200
MS.gene063584.t1 MTR_5g076505 50.476 210 100 2 15 221 101 309 5.83e-61 194
MS.gene063584.t1 MTR_5g076820 57.059 170 66 4 16 180 113 280 7.12e-54 175
MS.gene063584.t1 MTR_5g077020 57.353 136 52 3 16 150 78 208 4.41e-39 135
MS.gene063584.t1 MTR_5g076540 59.350 123 49 1 17 139 107 228 6.13e-39 135
MS.gene063584.t1 MTR_4g058025 59.140 93 37 1 16 108 40 131 4.48e-27 103
MS.gene063584.t1 MTR_5g092700 60.000 70 28 0 152 221 1 70 3.45e-19 81.3
MS.gene063584.t1 MTR_4g073580 60.000 70 28 0 152 221 1 70 3.45e-19 81.3
MS.gene063584.t1 MTR_7g105080 60.000 70 28 0 152 221 1 70 4.13e-19 80.5
MS.gene063584.t1 MTR_3g092130 60.000 70 28 0 152 221 1 70 4.13e-19 80.5
MS.gene063584.t1 MTR_1g059690 60.000 70 28 0 152 221 1 70 4.13e-19 80.5
MS.gene063584.t1 MTR_4g073580 60.000 70 28 0 152 221 1 70 8.73e-19 81.3
MS.gene063584.t1 MTR_8g088060 60.000 70 28 0 152 221 1 70 1.42e-18 79.7
MS.gene063584.t1 MTR_4g088485 55.000 80 36 0 142 221 128 207 1.43e-18 81.3
MS.gene063584.t1 MTR_4g088485 60.000 70 28 0 152 221 1 70 1.78e-18 80.9
MS.gene063584.t1 MTR_7g116360 60.563 71 28 0 151 221 48 118 1.58e-18 82.4
MS.gene063584.t1 MTR_7g116360 55.000 80 36 0 142 221 115 194 5.29e-18 80.9
MS.gene063584.t1 MTR_7g116360 55.000 80 36 0 142 221 191 270 5.29e-18 80.9
MS.gene063584.t1 MTR_4g080920 55.000 80 36 0 142 221 67 146 1.73e-18 81.3
MS.gene063584.t1 MTR_4g080920 58.571 70 29 0 152 221 1 70 2.76e-17 78.2
MS.gene063584.t1 MTR_4g080920 47.500 80 42 0 142 221 143 222 2.60e-13 67.4
MS.gene063584.t1 MTR_1g066390 55.000 80 36 0 142 221 67 146 1.77e-18 81.3
MS.gene063584.t1 MTR_1g066390 55.000 80 36 0 142 221 143 222 1.77e-18 81.3
MS.gene063584.t1 MTR_1g066390 60.000 70 28 0 152 221 1 70 2.13e-18 81.3
MS.gene063584.t1 MTR_5g033960 60.000 70 28 0 152 221 1 70 1.80e-18 79.7
MS.gene063584.t1 MTR_7g116360 55.000 80 36 0 142 221 67 146 1.87e-18 81.3
MS.gene063584.t1 MTR_7g116360 55.000 80 36 0 142 221 143 222 1.87e-18 81.3
MS.gene063584.t1 MTR_7g116360 60.000 70 28 0 152 221 1 70 2.25e-18 80.9
MS.gene063584.t1 MTR_3g092130 60.000 70 28 0 152 221 1 70 2.33e-18 79.0
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 67 146 3.77e-18 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 143 222 3.77e-18 81.3
MS.gene063584.t1 MTR_8g018230 60.000 70 28 0 152 221 1 70 4.66e-18 80.9
MS.gene063584.t1 MTR_6g061930 55.000 80 36 0 142 221 67 146 4.01e-18 81.6
MS.gene063584.t1 MTR_6g061930 55.000 80 36 0 142 221 204 283 4.01e-18 81.6
MS.gene063584.t1 MTR_6g061930 60.000 70 28 0 152 221 1 70 5.16e-18 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 67 146 5.74e-18 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 143 222 5.74e-18 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 219 298 5.74e-18 81.3
MS.gene063584.t1 MTR_4g081010 60.000 70 28 0 152 221 1 70 6.47e-18 81.3
MS.gene063584.t1 MTR_4g091580 55.000 80 36 0 142 221 295 374 6.45e-18 82.4
MS.gene063584.t1 MTR_4g091580 55.000 80 36 0 142 221 67 146 1.48e-17 81.3
MS.gene063584.t1 MTR_4g091580 55.000 80 36 0 142 221 143 222 1.48e-17 81.3
MS.gene063584.t1 MTR_4g091580 55.000 80 36 0 142 221 219 298 1.48e-17 81.3
MS.gene063584.t1 MTR_4g091580 55.000 80 36 0 142 221 371 450 1.48e-17 81.3
MS.gene063584.t1 MTR_4g091580 55.000 80 36 0 142 221 447 526 1.48e-17 81.3
MS.gene063584.t1 MTR_4g091580 60.000 70 28 0 152 221 1 70 1.65e-17 81.3
MS.gene063584.t1 MTR_4g091580 55.000 80 36 0 142 221 219 298 7.32e-18 81.6
MS.gene063584.t1 MTR_4g091580 55.000 80 36 0 142 221 67 146 1.00e-17 81.3
MS.gene063584.t1 MTR_4g091580 55.000 80 36 0 142 221 143 222 1.00e-17 81.3
MS.gene063584.t1 MTR_4g091580 55.000 80 36 0 142 221 295 374 1.00e-17 81.3
MS.gene063584.t1 MTR_4g091580 60.000 70 28 0 152 221 1 70 1.15e-17 81.3
MS.gene063584.t1 MTR_4g088495 61.429 70 27 0 152 221 1 70 9.88e-18 82.0
MS.gene063584.t1 MTR_4g088495 60.000 70 28 0 152 221 77 146 1.23e-16 79.0
MS.gene063584.t1 MTR_4g088495 60.000 70 28 0 152 221 153 222 1.23e-16 79.0
MS.gene063584.t1 MTR_4g088495 60.000 70 28 0 152 221 229 298 1.23e-16 79.0
MS.gene063584.t1 MTR_4g088495 60.000 70 28 0 152 221 305 374 1.23e-16 79.0
MS.gene063584.t1 MTR_4g088495 60.000 70 28 0 152 221 381 450 1.23e-16 79.0
MS.gene063584.t1 MTR_4g088495 60.000 70 28 0 152 221 457 526 1.23e-16 79.0
MS.gene063584.t1 MTR_4g088495 60.000 70 28 0 152 221 533 602 1.23e-16 79.0
MS.gene063584.t1 MTR_4g088495 60.000 70 28 0 152 221 609 678 1.23e-16 79.0
MS.gene063584.t1 MTR_4g088495 60.000 70 28 0 152 221 685 754 1.23e-16 79.0
MS.gene063584.t1 MTR_4g088495 60.000 70 28 0 152 221 761 830 1.23e-16 79.0
MS.gene063584.t1 MTR_8g081020 55.000 80 36 0 142 221 67 146 9.92e-18 81.3
MS.gene063584.t1 MTR_8g081020 55.000 80 36 0 142 221 143 222 9.92e-18 81.3
MS.gene063584.t1 MTR_8g081020 55.000 80 36 0 142 221 219 298 9.92e-18 81.3
MS.gene063584.t1 MTR_8g081020 55.000 80 36 0 142 221 295 374 9.92e-18 81.3
MS.gene063584.t1 MTR_8g081020 60.000 70 28 0 152 221 1 70 1.10e-17 81.3
MS.gene063584.t1 MTR_4g080797 55.000 80 36 0 142 221 67 146 1.05e-17 81.3
MS.gene063584.t1 MTR_4g080797 55.000 80 36 0 142 221 143 222 1.05e-17 81.3
MS.gene063584.t1 MTR_4g080797 55.000 80 36 0 142 221 219 298 1.05e-17 81.3
MS.gene063584.t1 MTR_4g080797 55.000 80 36 0 142 221 295 374 1.05e-17 81.3
MS.gene063584.t1 MTR_4g080797 60.000 70 28 0 152 221 1 70 1.19e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 67 146 1.05e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 143 222 1.05e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 219 298 1.05e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 295 374 1.05e-17 81.3
MS.gene063584.t1 MTR_8g018230 60.000 70 28 0 152 221 1 70 1.19e-17 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 67 146 1.08e-17 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 143 222 1.08e-17 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 219 298 1.08e-17 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 295 374 1.08e-17 81.3
MS.gene063584.t1 MTR_4g081010 60.000 70 28 0 152 221 1 70 1.22e-17 81.3
MS.gene063584.t1 MTR_4g081010 60.000 70 28 0 152 221 1 70 1.22e-17 80.1
MS.gene063584.t1 MTR_4g081010 60.000 70 28 0 152 221 77 146 1.22e-17 80.1
MS.gene063584.t1 MTR_4g081010 60.000 70 28 0 152 221 153 222 1.22e-17 80.1
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 67 146 1.38e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 143 222 1.38e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 219 298 1.38e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 295 374 1.38e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 371 450 1.38e-17 81.3
MS.gene063584.t1 MTR_8g018230 60.000 70 28 0 152 221 1 70 1.55e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 67 146 1.38e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 143 222 1.38e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 219 298 1.38e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 295 374 1.38e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 371 450 1.38e-17 81.3
MS.gene063584.t1 MTR_8g018230 60.000 70 28 0 152 221 1 70 1.55e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 67 146 1.52e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 143 222 1.52e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 219 298 1.52e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 295 374 1.52e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 371 450 1.52e-17 81.3
MS.gene063584.t1 MTR_8g018230 55.000 80 36 0 142 221 447 526 1.52e-17 81.3
MS.gene063584.t1 MTR_8g018230 60.000 70 28 0 152 221 1 70 1.69e-17 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 67 146 1.62e-17 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 143 222 1.62e-17 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 219 298 1.62e-17 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 295 374 1.62e-17 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 371 450 1.62e-17 81.3
MS.gene063584.t1 MTR_4g081010 55.000 80 36 0 142 221 447 526 1.62e-17 81.3
MS.gene063584.t1 MTR_4g081010 60.000 70 28 0 152 221 1 70 1.78e-17 81.3
MS.gene063584.t1 MTR_4g094468 35.821 134 80 3 16 146 192 322 9.42e-17 78.2
MS.gene063584.t1 MTR_5g061310 50.000 70 35 0 152 221 2 71 1.19e-16 72.4
MS.gene063584.t1 MTR_8g479250 56.250 80 35 0 142 221 131 210 2.42e-14 71.2
MS.gene063584.t1 MTR_8g479250 45.000 80 33 1 142 221 207 275 2.87e-11 62.4
MS.gene063584.t1 MTR_5g076740 47.761 67 34 1 151 216 85 151 3.84e-12 62.8
MS.gene063584.t1 MTR_5g076340 47.222 72 36 2 152 221 9 80 4.83e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063584.t1 AT1G65350 56.250 80 35 0 142 221 142 221 9.79e-20 86.3
MS.gene063584.t1 AT1G65350 60.000 70 28 0 152 221 1 70 1.07e-17 80.9
MS.gene063584.t1 AT1G65350 53.750 80 36 1 142 221 67 145 4.71e-15 73.2
MS.gene063584.t1 AT1G65350 43.617 94 39 1 142 221 218 311 1.56e-11 63.2
MS.gene063584.t1 AT4G05050 55.000 80 36 0 142 221 67 146 4.37e-19 81.3
MS.gene063584.t1 AT4G05050 60.000 70 28 0 152 221 1 70 5.51e-19 80.9
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 67 146 4.37e-19 81.3
MS.gene063584.t1 AT4G05320 60.000 70 28 0 152 221 1 70 5.51e-19 80.9
MS.gene063584.t1 AT3G52590 60.000 70 28 0 152 221 1 70 5.39e-19 80.1
MS.gene063584.t1 AT2G36170 60.000 70 28 0 152 221 1 70 5.39e-19 80.1
MS.gene063584.t1 AT2G35635 60.000 70 28 0 152 221 1 70 5.64e-19 80.9
MS.gene063584.t1 AT1G31340 60.000 70 28 0 152 221 1 70 5.73e-19 80.9
MS.gene063584.t1 AT2G47110 60.000 70 28 0 152 221 1 70 1.00e-18 80.5
MS.gene063584.t1 AT2G47110 60.000 70 28 0 152 221 1 70 1.00e-18 80.5
MS.gene063584.t1 AT3G62250 60.000 70 28 0 152 221 1 70 1.10e-18 80.1
MS.gene063584.t1 AT1G23410 60.000 70 28 0 152 221 1 70 1.35e-18 80.1
MS.gene063584.t1 AT4G05050 55.000 80 36 0 142 221 67 146 1.96e-18 81.3
MS.gene063584.t1 AT4G05050 55.000 80 36 0 142 221 143 222 1.96e-18 81.3
MS.gene063584.t1 AT4G05050 60.000 70 28 0 152 221 1 70 2.35e-18 80.9
MS.gene063584.t1 AT4G05050 55.000 80 36 0 142 221 67 146 1.96e-18 81.3
MS.gene063584.t1 AT4G05050 55.000 80 36 0 142 221 143 222 1.96e-18 81.3
MS.gene063584.t1 AT4G05050 60.000 70 28 0 152 221 1 70 2.35e-18 80.9
MS.gene063584.t1 AT4G05050 55.000 80 36 0 142 221 67 146 1.96e-18 81.3
MS.gene063584.t1 AT4G05050 55.000 80 36 0 142 221 143 222 1.96e-18 81.3
MS.gene063584.t1 AT4G05050 60.000 70 28 0 152 221 1 70 2.35e-18 80.9
MS.gene063584.t1 AT4G02890 55.000 80 36 0 142 221 67 146 1.96e-18 81.3
MS.gene063584.t1 AT4G02890 55.000 80 36 0 142 221 143 222 1.96e-18 81.3
MS.gene063584.t1 AT4G02890 60.000 70 28 0 152 221 1 70 2.35e-18 80.9
MS.gene063584.t1 AT4G02890 55.000 80 36 0 142 221 67 146 1.96e-18 81.3
MS.gene063584.t1 AT4G02890 55.000 80 36 0 142 221 143 222 1.96e-18 81.3
MS.gene063584.t1 AT4G02890 60.000 70 28 0 152 221 1 70 2.35e-18 80.9
MS.gene063584.t1 AT5G37640 56.250 80 35 0 142 221 69 148 2.62e-18 82.4
MS.gene063584.t1 AT5G37640 52.809 89 39 2 134 221 215 301 5.49e-16 75.9
MS.gene063584.t1 AT5G37640 53.750 80 37 0 142 221 145 224 7.02e-16 75.9
MS.gene063584.t1 AT5G37640 51.429 70 34 0 152 221 3 72 2.55e-11 62.8
MS.gene063584.t1 AT3G09790 55.000 80 36 0 142 221 69 148 4.39e-18 83.2
MS.gene063584.t1 AT3G09790 57.143 70 30 0 152 221 552 621 5.83e-15 73.9
MS.gene063584.t1 AT3G09790 51.429 70 34 0 152 221 3 72 5.09e-13 68.2
MS.gene063584.t1 AT3G09790 50.725 69 34 0 152 220 393 461 3.81e-11 62.8
MS.gene063584.t1 AT3G09790 55.000 80 36 0 142 221 69 148 4.39e-18 83.2
MS.gene063584.t1 AT3G09790 57.143 70 30 0 152 221 552 621 5.83e-15 73.9
MS.gene063584.t1 AT3G09790 51.429 70 34 0 152 221 3 72 5.09e-13 68.2
MS.gene063584.t1 AT3G09790 50.725 69 34 0 152 220 393 461 3.81e-11 62.8
MS.gene063584.t1 AT5G03240 55.000 80 36 0 142 221 67 146 5.61e-18 81.3
MS.gene063584.t1 AT5G03240 55.000 80 36 0 142 221 143 222 5.61e-18 81.3
MS.gene063584.t1 AT5G03240 55.000 80 36 0 142 221 219 298 5.61e-18 81.3
MS.gene063584.t1 AT5G03240 60.000 70 28 0 152 221 1 70 6.46e-18 81.3
MS.gene063584.t1 AT5G03240 55.000 80 36 0 142 221 67 146 5.61e-18 81.3
MS.gene063584.t1 AT5G03240 55.000 80 36 0 142 221 143 222 5.61e-18 81.3
MS.gene063584.t1 AT5G03240 55.000 80 36 0 142 221 219 298 5.61e-18 81.3
MS.gene063584.t1 AT5G03240 60.000 70 28 0 152 221 1 70 6.46e-18 81.3
MS.gene063584.t1 AT5G03240 55.000 80 36 0 142 221 67 146 5.61e-18 81.3
MS.gene063584.t1 AT5G03240 55.000 80 36 0 142 221 143 222 5.61e-18 81.3
MS.gene063584.t1 AT5G03240 55.000 80 36 0 142 221 219 298 5.61e-18 81.3
MS.gene063584.t1 AT5G03240 60.000 70 28 0 152 221 1 70 6.46e-18 81.3
MS.gene063584.t1 AT5G20620 55.000 80 36 0 142 221 67 146 5.61e-18 81.3
MS.gene063584.t1 AT5G20620 55.000 80 36 0 142 221 143 222 5.61e-18 81.3
MS.gene063584.t1 AT5G20620 55.000 80 36 0 142 221 219 298 5.61e-18 81.3
MS.gene063584.t1 AT5G20620 60.000 70 28 0 152 221 1 70 6.46e-18 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 67 146 5.66e-18 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 143 222 5.66e-18 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 219 298 5.66e-18 81.3
MS.gene063584.t1 AT4G05320 60.000 70 28 0 152 221 1 70 6.51e-18 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 67 146 5.66e-18 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 143 222 5.66e-18 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 219 298 5.66e-18 81.3
MS.gene063584.t1 AT4G05320 60.000 70 28 0 152 221 1 70 6.51e-18 81.3
MS.gene063584.t1 AT4G02890 55.000 80 36 0 142 221 67 146 5.66e-18 81.3
MS.gene063584.t1 AT4G02890 55.000 80 36 0 142 221 143 222 5.66e-18 81.3
MS.gene063584.t1 AT4G02890 55.000 80 36 0 142 221 219 298 5.66e-18 81.3
MS.gene063584.t1 AT4G02890 60.000 70 28 0 152 221 1 70 6.51e-18 81.3
MS.gene063584.t1 AT4G02890 55.000 80 36 0 142 221 67 146 5.66e-18 81.3
MS.gene063584.t1 AT4G02890 55.000 80 36 0 142 221 143 222 5.66e-18 81.3
MS.gene063584.t1 AT4G02890 55.000 80 36 0 142 221 219 298 5.66e-18 81.3
MS.gene063584.t1 AT4G02890 60.000 70 28 0 152 221 1 70 6.51e-18 81.3
MS.gene063584.t1 AT1G55060 58.571 70 29 0 152 221 77 146 9.31e-18 79.3
MS.gene063584.t1 AT1G55060 53.750 80 37 0 142 221 143 222 2.27e-17 78.6
MS.gene063584.t1 AT1G55060 54.286 70 32 0 152 221 1 70 1.02e-15 73.9
MS.gene063584.t1 AT5G20620 55.000 80 36 0 142 221 67 146 1.03e-17 81.3
MS.gene063584.t1 AT5G20620 55.000 80 36 0 142 221 143 222 1.03e-17 81.3
MS.gene063584.t1 AT5G20620 55.000 80 36 0 142 221 219 298 1.03e-17 81.3
MS.gene063584.t1 AT5G20620 55.000 80 36 0 142 221 295 374 1.03e-17 81.3
MS.gene063584.t1 AT5G20620 60.000 70 28 0 152 221 1 70 1.17e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 67 146 1.10e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 143 222 1.10e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 219 298 1.10e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 295 374 1.10e-17 81.3
MS.gene063584.t1 AT4G05320 60.000 70 28 0 152 221 1 70 1.25e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 67 146 1.10e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 143 222 1.10e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 219 298 1.10e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 295 374 1.10e-17 81.3
MS.gene063584.t1 AT4G05320 60.000 70 28 0 152 221 1 70 1.25e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 67 146 1.10e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 143 222 1.10e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 219 298 1.10e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 295 374 1.10e-17 81.3
MS.gene063584.t1 AT4G05320 60.000 70 28 0 152 221 1 70 1.25e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 67 146 1.45e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 143 222 1.45e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 219 298 1.45e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 295 374 1.45e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 371 450 1.45e-17 81.3
MS.gene063584.t1 AT4G05320 60.000 70 28 0 152 221 1 70 1.62e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 67 146 1.45e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 143 222 1.45e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 219 298 1.45e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 295 374 1.45e-17 81.3
MS.gene063584.t1 AT4G05320 55.000 80 36 0 142 221 371 450 1.45e-17 81.3
MS.gene063584.t1 AT4G05320 60.000 70 28 0 152 221 1 70 1.62e-17 81.3
MS.gene063584.t1 AT1G53930 36.207 116 61 2 119 221 40 155 1.85e-14 68.9

Find 49 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCTACTATTATGATATTT+TGG 0.176894 5.2:+65236875 MS.gene063584:CDS
CCTTGTGCTTATGGCTAAAA+TGG 0.204532 5.2:-65236674 None:intergenic
TTCGAGAATCCTTGTGCTTA+TGG 0.254942 5.2:-65236683 None:intergenic
AGGGGCTATCATATGAAAAT+TGG 0.296646 5.2:-65236707 None:intergenic
AAGAACCAAATTGAATTAAA+AGG 0.302204 5.2:-65236983 None:intergenic
GTAGCGTGGTTCAGAAGATT+TGG 0.338746 5.2:-65236859 None:intergenic
CCCTTTGAAGGTGGAGAGTT+CGG 0.344007 5.2:+65237294 MS.gene063584:CDS
GGCTTCATCATTAAACTTCA+AGG 0.396925 5.2:-65236739 None:intergenic
AAGGGATAATCTTTCCAGTC+AGG 0.403562 5.2:-65237276 None:intergenic
GGTAAAGGATGGACTTATCT+TGG 0.415625 5.2:-65237438 None:intergenic
TAGCGTGGTTCAGAAGATTT+GGG 0.434925 5.2:-65236858 None:intergenic
GCATTCAATATTAGCTGCAT+TGG 0.434968 5.2:+65236831 MS.gene063584:CDS
ATTCTTCAAGAGAAAAGTGT+TGG 0.454489 5.2:+65236765 MS.gene063584:CDS
CATCTAGTTGCTTATTTGCA+AGG 0.465573 5.2:-65237387 None:intergenic
TGGAAAGATTATCCCTTTGA+AGG 0.467459 5.2:+65237282 MS.gene063584:CDS
AATTTCTAACTTGAGTGGTT+CGG 0.475098 5.2:-65237006 None:intergenic
AACTTCAAGGTGACAAAGAA+GGG 0.477193 5.2:-65236726 None:intergenic
GAGGGTCGCCGACGAGGTAA+AGG 0.477240 5.2:-65237453 None:intergenic
TTGCAAGGAACAAATAATGT+TGG 0.483577 5.2:-65237372 None:intergenic
TTCTTCAAGAGAAAAGTGTT+GGG 0.487417 5.2:+65236766 MS.gene063584:CDS
TCCGAACTCTCCACCTTCAA+AGG 0.489142 5.2:-65237295 None:intergenic
ATCTTCGTACAAACCCTGAC+TGG 0.506598 5.2:+65237262 MS.gene063584:CDS
GAAGGTGGAGAGTTCGGATA+CGG 0.521257 5.2:+65237300 MS.gene063584:CDS
AAAACTGTGGAACTTTGCGT+TGG 0.524516 5.2:-65236913 None:intergenic
TCATTCTAAATAAAAGAACT+AGG 0.526844 5.2:+65236796 MS.gene063584:CDS
AAACTTCAAGGTGACAAAGA+AGG 0.527821 5.2:-65236727 None:intergenic
AGGGATAATCTTTCCAGTCA+GGG 0.534012 5.2:-65237275 None:intergenic
ATGCAAATTTCTAACTTGAG+TGG 0.543484 5.2:-65237011 None:intergenic
CCGAACTCTCCACCTTCAAA+GGG 0.545035 5.2:-65237294 None:intergenic
TTGGATGTCGTAATCATCAA+TGG 0.545303 5.2:-65237419 None:intergenic
CATGATGAGGGTCGCCGACG+AGG 0.556269 5.2:-65237459 None:intergenic
TCTATCTGCTGTTCTAAACA+TGG 0.558063 5.2:+65236426 MS.gene063584:CDS
GAGTGGTTGTCATCATGATG+AGG 0.579010 5.2:-65237472 None:intergenic
ATTTATCTAGCTAGGGTGAG+TGG 0.587133 5.2:-65237489 None:intergenic
AAAGATTATCCCTTTGAAGG+TGG 0.598975 5.2:+65237285 MS.gene063584:CDS
GAGTTTCTAAAGAAACTCGT+TGG 0.603280 5.2:-65236947 None:intergenic
GTCGCCGACGAGGTAAAGGA+TGG 0.603797 5.2:-65237449 None:intergenic
AAATAAAAGAACTAGGAGTG+TGG 0.616493 5.2:+65236803 MS.gene063584:CDS
AAGTCCATCCTTTACCTCGT+CGG 0.626464 5.2:+65237445 MS.gene063584:CDS
CTATCTGCTGTTCTAAACAT+GGG 0.627628 5.2:+65236427 MS.gene063584:CDS
GCTGTTCTAAACATGGGACC+AGG 0.644395 5.2:+65236433 MS.gene063584:CDS
GGTGGAGAGTTCGGATACGG+TGG 0.648845 5.2:+65237303 MS.gene063584:CDS
CGTAATCATCAATGGTGTGG+CGG 0.651528 5.2:-65237411 None:intergenic
ACTTCAAGGTGACAAAGAAG+GGG 0.652282 5.2:-65236725 None:intergenic
AAAATATCATAATAGTAGCG+TGG 0.653980 5.2:-65236873 None:intergenic
AGTGGTTGTCATCATGATGA+GGG 0.656688 5.2:-65237471 None:intergenic
CGTGGTTCAGAAGATTTGGG+AGG 0.677215 5.2:-65236855 None:intergenic
TGTCGTAATCATCAATGGTG+TGG 0.694563 5.2:-65237414 None:intergenic
AAAGGAGATAGATACCTTGG+GGG 0.737238 5.2:-65237036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTTTTTTTTTCTTTTTC+TGG + chr5.2:65237187-65237206 MS.gene063584:intron 15.0%
!!! TTATTATTGATTAGTTTTGT+TGG + chr5.2:65237219-65237238 MS.gene063584:intron 15.0%
!! AAGAACCAAATTGAATTAAA+AGG - chr5.2:65236986-65237005 None:intergenic 20.0%
!! TCATTCTAAATAAAAGAACT+AGG + chr5.2:65236796-65236815 MS.gene063584:CDS 20.0%
!!! ACTATTATGATATTTTGGTT+AGG + chr5.2:65236880-65236899 MS.gene063584:CDS 20.0%
! AAAATATCATAATAGTAGCG+TGG - chr5.2:65236876-65236895 None:intergenic 25.0%
! AAGGTGAAAATAACTTATAG+TGG + chr5.2:65236558-65236577 MS.gene063584:intron 25.0%
! TGATAGAGTTAAAATTCGAT+AGG - chr5.2:65237111-65237130 None:intergenic 25.0%
!! ACGCTACTATTATGATATTT+TGG + chr5.2:65236875-65236894 MS.gene063584:CDS 25.0%
!! ACTTTTCTCTTGAAGAATAA+TGG - chr5.2:65236763-65236782 None:intergenic 25.0%
!!! ATTAGTTTTGTTGGTAATTG+TGG + chr5.2:65237228-65237247 MS.gene063584:intron 25.0%
!!! GAGTTCCTTTTAATTCAATT+TGG + chr5.2:65236978-65236997 MS.gene063584:CDS 25.0%
AAATAAAAGAACTAGGAGTG+TGG + chr5.2:65236803-65236822 MS.gene063584:CDS 30.0%
AATTTCTAACTTGAGTGGTT+CGG - chr5.2:65237009-65237028 None:intergenic 30.0%
AGATTGCAATAGATTCTCAA+TGG - chr5.2:65236502-65236521 None:intergenic 30.0%
ATGCAAATTTCTAACTTGAG+TGG - chr5.2:65237014-65237033 None:intergenic 30.0%
CAAAAATTTGTGACAAGGAA+TGG + chr5.2:65237338-65237357 MS.gene063584:CDS 30.0%
GAAAGCAAAAATTTGTGACA+AGG + chr5.2:65237333-65237352 MS.gene063584:CDS 30.0%
TTAATTGAGAAGAACAAGTG+AGG - chr5.2:65237068-65237087 None:intergenic 30.0%
TTGCAAGGAACAAATAATGT+TGG - chr5.2:65237375-65237394 None:intergenic 30.0%
! ATTCTTCAAGAGAAAAGTGT+TGG + chr5.2:65236765-65236784 MS.gene063584:CDS 30.0%
!! TTCTTCAAGAGAAAAGTGTT+GGG + chr5.2:65236766-65236785 MS.gene063584:CDS 30.0%
AAAAGGAGATAGATACCTTG+GGG - chr5.2:65237040-65237059 None:intergenic 35.0%
AAACTTCAAGGTGACAAAGA+AGG - chr5.2:65236730-65236749 None:intergenic 35.0%
AACTTCAAGGTGACAAAGAA+GGG - chr5.2:65236729-65236748 None:intergenic 35.0%
ACAAAGTCACAACCTAAAAC+GGG - chr5.2:65236630-65236649 None:intergenic 35.0%
AGAAAAGGAGATAGATACCT+TGG - chr5.2:65237042-65237061 None:intergenic 35.0%
AGGGGCTATCATATGAAAAT+TGG - chr5.2:65236710-65236729 None:intergenic 35.0%
CACAAAGTCACAACCTAAAA+CGG - chr5.2:65236631-65236650 None:intergenic 35.0%
CATCTAGTTGCTTATTTGCA+AGG - chr5.2:65237390-65237409 None:intergenic 35.0%
GAAAAGGAGATAGATACCTT+GGG - chr5.2:65237041-65237060 None:intergenic 35.0%
GAACAAGTGAGGTAAAGAAA+AGG - chr5.2:65237057-65237076 None:intergenic 35.0%
GCATTCAATATTAGCTGCAT+TGG + chr5.2:65236831-65236850 MS.gene063584:CDS 35.0%
GGACATTCTTAGAAAAACTG+TGG - chr5.2:65236929-65236948 None:intergenic 35.0%
GGCTTCATCATTAAACTTCA+AGG - chr5.2:65236742-65236761 None:intergenic 35.0%
TGGAAAGATTATCCCTTTGA+AGG + chr5.2:65237282-65237301 MS.gene063584:CDS 35.0%
TTGGATGTCGTAATCATCAA+TGG - chr5.2:65237422-65237441 None:intergenic 35.0%
! AAAGATTATCCCTTTGAAGG+TGG + chr5.2:65237285-65237304 MS.gene063584:CDS 35.0%
! ACAAATTTTTGCTTTCACGC+TGG - chr5.2:65237329-65237348 None:intergenic 35.0%
! CTATCTGCTGTTCTAAACAT+GGG + chr5.2:65236427-65236446 MS.gene063584:CDS 35.0%
! GAGTTTCTAAAGAAACTCGT+TGG - chr5.2:65236950-65236969 None:intergenic 35.0%
! TCTATCTGCTGTTCTAAACA+TGG + chr5.2:65236426-65236445 MS.gene063584:CDS 35.0%
! TTGCAACCATGTTTTACGTT+CGG - chr5.2:65236540-65236559 None:intergenic 35.0%
AAAACTGTGGAACTTTGCGT+TGG - chr5.2:65236916-65236935 None:intergenic 40.0%
AAAGGAGATAGATACCTTGG+GGG - chr5.2:65237039-65237058 None:intergenic 40.0%
AAGGGATAATCTTTCCAGTC+AGG - chr5.2:65237279-65237298 None:intergenic 40.0%
ACTTCAAGGTGACAAAGAAG+GGG - chr5.2:65236728-65236747 None:intergenic 40.0%
AGAAATTTGCATAACCCCCA+AGG + chr5.2:65237022-65237041 MS.gene063584:CDS 40.0%
AGGGATAATCTTTCCAGTCA+GGG - chr5.2:65237278-65237297 None:intergenic 40.0%
AGTGGTTGTCATCATGATGA+GGG - chr5.2:65237474-65237493 None:intergenic 40.0%
CAAAGTCACAACCTAAAACG+GGG - chr5.2:65236629-65236648 None:intergenic 40.0%
CAATAGATTCTCAATGGCTC+TGG - chr5.2:65236496-65236515 None:intergenic 40.0%
CCTTGTGCTTATGGCTAAAA+TGG - chr5.2:65236677-65236696 None:intergenic 40.0%
GAACGTAAAACATGGTTGCA+AGG + chr5.2:65236539-65236558 MS.gene063584:intron 40.0%
TAGCGTGGTTCAGAAGATTT+GGG - chr5.2:65236861-65236880 None:intergenic 40.0%
TCATGTCCGAACGTAAAACA+TGG + chr5.2:65236531-65236550 MS.gene063584:intron 40.0%
TGGAAAACATCTTTGACACC+TGG - chr5.2:65236454-65236473 None:intergenic 40.0%
TGTCGTAATCATCAATGGTG+TGG - chr5.2:65237417-65237436 None:intergenic 40.0%
TTCGAGAATCCTTGTGCTTA+TGG - chr5.2:65236686-65236705 None:intergenic 40.0%
! AGGTGTCAAAGATGTTTTCC+AGG + chr5.2:65236453-65236472 MS.gene063584:intron 40.0%
! GGTAAAGGATGGACTTATCT+TGG - chr5.2:65237441-65237460 None:intergenic 40.0%
!! CCATTTTAGCCATAAGCACA+AGG + chr5.2:65236674-65236693 MS.gene063584:CDS 40.0%
!!! AATGGCTCTGGATCGTTTTA+AGG - chr5.2:65236484-65236503 None:intergenic 40.0%
!!! GATCGTTTTAAGGTAATGCC+TGG - chr5.2:65236474-65236493 None:intergenic 40.0%
AAGTCCATCCTTTACCTCGT+CGG + chr5.2:65237445-65237464 MS.gene063584:CDS 45.0%
ATCTTCGTACAAACCCTGAC+TGG + chr5.2:65237262-65237281 MS.gene063584:CDS 45.0%
CGTAATCATCAATGGTGTGG+CGG - chr5.2:65237414-65237433 None:intergenic 45.0%
GAGTGGTTGTCATCATGATG+AGG - chr5.2:65237475-65237494 None:intergenic 45.0%
GTAGCGTGGTTCAGAAGATT+TGG - chr5.2:65236862-65236881 None:intergenic 45.0%
CCGAACTCTCCACCTTCAAA+GGG - chr5.2:65237297-65237316 None:intergenic 50.0%
CGTGGTTCAGAAGATTTGGG+AGG - chr5.2:65236858-65236877 None:intergenic 50.0%
GAAGGTGGAGAGTTCGGATA+CGG + chr5.2:65237300-65237319 MS.gene063584:CDS 50.0%
TCCGAACTCTCCACCTTCAA+AGG - chr5.2:65237298-65237317 None:intergenic 50.0%
! CCCTTTGAAGGTGGAGAGTT+CGG + chr5.2:65237294-65237313 MS.gene063584:CDS 50.0%
! GCTGTTCTAAACATGGGACC+AGG + chr5.2:65236433-65236452 MS.gene063584:CDS 50.0%
CCTAAAACGGGGCAGGAACA+TGG - chr5.2:65236618-65236637 None:intergenic 55.0%
GTCACAACCTAAAACGGGGC+AGG - chr5.2:65236625-65236644 None:intergenic 55.0%
! CCATGTTCCTGCCCCGTTTT+AGG + chr5.2:65236615-65236634 MS.gene063584:intron 55.0%
GGTGGAGAGTTCGGATACGG+TGG + chr5.2:65237303-65237322 MS.gene063584:CDS 60.0%
GTCGCCGACGAGGTAAAGGA+TGG - chr5.2:65237452-65237471 None:intergenic 60.0%
CATGATGAGGGTCGCCGACG+AGG - chr5.2:65237462-65237481 None:intergenic 65.0%
GAGGGTCGCCGACGAGGTAA+AGG - chr5.2:65237456-65237475 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 65236409 65237501 65236409 ID=MS.gene063584
chr5.2 mRNA 65236409 65237501 65236409 ID=MS.gene063584.t1;Parent=MS.gene063584
chr5.2 exon 65236409 65236454 65236409 ID=MS.gene063584.t1.exon1;Parent=MS.gene063584.t1
chr5.2 CDS 65236409 65236454 65236409 ID=cds.MS.gene063584.t1;Parent=MS.gene063584.t1
chr5.2 exon 65236637 65237043 65236637 ID=MS.gene063584.t1.exon2;Parent=MS.gene063584.t1
chr5.2 CDS 65236637 65237043 65236637 ID=cds.MS.gene063584.t1;Parent=MS.gene063584.t1
chr5.2 exon 65237256 65237501 65237256 ID=MS.gene063584.t1.exon3;Parent=MS.gene063584.t1
chr5.2 CDS 65237256 65237501 65237256 ID=cds.MS.gene063584.t1;Parent=MS.gene063584.t1
Gene Sequence

>MS.gene063584

ATGGTCATGTTGTTTGCTCTATCTGCTGTTCTAAACATGGGACCAGGTGTCAAAGATGTTTTCCAGGCATTACCTTAAAACGATCCAGAGCCATTGAGAATCTATTGCAATCTATCAAAATATCATGTCCGAACGTAAAACATGGTTGCAAGGTGAAAATAACTTATAGTGGAAAGAAGAAGCATGAAGAAGAATGCATCTATGTGCCATGTTCCTGCCCCGTTTTAGGTTGTGACTTTGTGACGTCATCTGAAGTGTTATCTAGCCATTTTAGCCATAAGCACAAGGATTCTCGAATCCAATTTTCATATGATAGCCCCTTCTTTGTCACCTTGAAGTTTAATGATGAAGCCATTATTCTTCAAGAGAAAAGTGTTGGGAAATTGTTCATTCTAAATAAAAGAACTAGGAGTGTGGAAAATGCATTCAATATTAGCTGCATTGGTCCTCCCAAATCTTCTGAACCACGCTACTATTATGATATTTTGGTTAGGTCACAGAAATCCAACGCAAAGTTCCACAGTTTTTCTAAGAATGTCCAACGAGTTTCTTTAGAAACTCTTTCATCAGAGTTCCTTTTAATTCAATTTGGTTCTTCCGAACCACTCAAGTTAGAAATTTGCATAACCCCCAAGGTATCTATCTCCTTTTCTTTACCTCACTTGTTCTTCTCAATTAAAGTCTTGATATTTTCATTTTCCTATCGAATTTTAACTCTATCATTTTATATGAAATTCATTCGTTTTTTTTAAATGACTAAAAAGATTGTAACATGTTTTAGTTTTTTTTTTCTTTTTCTGGTGTTATTTATTATTATTGATTAGTTTTGTTGGTAATTGTGGTGTAGATGCAAATCTTCGTACAAACCCTGACTGGAAAGATTATCCCTTTGAAGGTGGAGAGTTCGGATACGGTGGCCAGCGTGAAAGCAAAAATTTGTGACAAGGAATGGTTCATATTGCACCAACATTATTTGTTCCTTGCAAATAAGCAACTAGATGACCGCCACACCATTGATGATTACGACATCCAAGATAAGTCCATCCTTTACCTCGTCGGCGACCCTCATCATGATGACAACCACTCACCCTAG

Protein sequence

>MS.gene063584.t1

MVMLFALSAVLNMGPGCDFVTSSEVLSSHFSHKHKDSRIQFSYDSPFFVTLKFNDEAIILQEKSVGKLFILNKRTRSVENAFNISCIGPPKSSEPRYYYDILVRSQKSNAKFHSFSKNVQRVSLETLSSEFLLIQFGSSEPLKLEICITPKMQIFVQTLTGKIIPLKVESSDTVASVKAKICDKEWFILHQHYLFLANKQLDDRHTIDDYDIQDKSILYLVGDPHHDDNHSP