AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26202


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26202.t1 MTR_5g076370 92.669 341 24 1 1 341 1 340 0.0 640
MS.gene26202.t1 MTR_5g076660 66.864 338 110 2 1 338 1 336 7.69e-149 423
MS.gene26202.t1 MTR_7g024290 68.874 302 89 3 37 337 14 311 8.14e-142 404
MS.gene26202.t1 MTR_1g046640 65.714 315 102 4 26 340 4 312 5.10e-140 399
MS.gene26202.t1 MTR_5g067400 65.397 315 104 3 26 340 4 313 8.18e-140 399
MS.gene26202.t1 MTR_5g076720 61.696 342 123 4 2 340 51 387 8.15e-138 397
MS.gene26202.t1 MTR_1g046650 64.127 315 107 4 26 340 4 312 9.59e-138 394
MS.gene26202.t1 MTR_1g046650 63.354 322 112 4 19 340 28 343 1.59e-137 394
MS.gene26202.t1 MTR_7g094390 62.727 330 118 3 9 338 148 472 1.00e-134 392
MS.gene26202.t1 MTR_1g046650 65.636 291 96 2 50 340 26 312 1.88e-132 380
MS.gene26202.t1 MTR_2g038420 60.778 334 121 5 10 338 2 330 1.44e-125 363
MS.gene26202.t1 MTR_2g038430 57.941 340 125 5 10 336 2 336 1.47e-124 361
MS.gene26202.t1 MTR_5g076810 68.030 269 82 2 73 340 2 267 6.38e-123 354
MS.gene26202.t1 MTR_5g061290 59.146 328 119 6 20 340 5 324 1.25e-121 353
MS.gene26202.t1 MTR_5g076520 60.252 317 117 5 26 338 4 315 2.79e-119 347
MS.gene26202.t1 MTR_5g076505 59.794 291 111 2 51 338 23 310 6.31e-115 336
MS.gene26202.t1 MTR_1g046650 65.587 247 81 2 94 340 1 243 4.21e-110 321
MS.gene26202.t1 MTR_5g076820 63.462 260 87 4 46 301 30 285 2.05e-104 308
MS.gene26202.t1 MTR_5g076540 64.444 225 78 2 26 250 4 226 3.19e-92 275
MS.gene26202.t1 MTR_5g077020 59.091 198 67 4 77 266 17 208 4.31e-66 208
MS.gene26202.t1 MTR_4g094468 43.145 248 135 5 17 264 83 324 4.13e-61 199
MS.gene26202.t1 MTR_4g058025 76.106 113 26 1 105 216 14 126 1.23e-50 167
MS.gene26202.t1 MTR_5g092700 61.644 73 28 0 268 340 1 73 5.01e-22 91.3
MS.gene26202.t1 MTR_4g073580 61.644 73 28 0 268 340 1 73 5.01e-22 91.3
MS.gene26202.t1 MTR_7g105080 61.644 73 28 0 268 340 1 73 1.03e-21 89.7
MS.gene26202.t1 MTR_3g092130 61.644 73 28 0 268 340 1 73 1.03e-21 89.7
MS.gene26202.t1 MTR_1g059690 61.644 73 28 0 268 340 1 73 1.03e-21 89.7
MS.gene26202.t1 MTR_4g088485 56.627 83 36 0 258 340 128 210 1.33e-21 91.7
MS.gene26202.t1 MTR_4g088485 61.644 73 28 0 268 340 1 73 2.88e-21 90.9
MS.gene26202.t1 MTR_4g073580 61.644 73 28 0 268 340 1 73 1.43e-21 90.9
MS.gene26202.t1 MTR_1g066390 56.627 83 36 0 258 340 67 149 1.60e-21 92.0
MS.gene26202.t1 MTR_1g066390 56.627 83 36 0 258 340 143 225 1.60e-21 92.0
MS.gene26202.t1 MTR_1g066390 61.644 73 28 0 268 340 1 73 3.38e-21 91.3
MS.gene26202.t1 MTR_7g116360 56.627 83 36 0 258 340 67 149 1.65e-21 92.0
MS.gene26202.t1 MTR_7g116360 56.627 83 36 0 258 340 143 225 1.65e-21 92.0
MS.gene26202.t1 MTR_7g116360 61.644 73 28 0 268 340 1 73 3.28e-21 90.9
MS.gene26202.t1 MTR_8g088060 61.644 73 28 0 268 340 1 73 2.13e-21 89.7
MS.gene26202.t1 MTR_5g033960 61.644 73 28 0 268 340 1 73 2.19e-21 89.4
MS.gene26202.t1 MTR_7g116360 62.162 74 28 0 267 340 48 121 2.61e-21 92.4
MS.gene26202.t1 MTR_7g116360 56.627 83 36 0 258 340 115 197 4.38e-21 91.7
MS.gene26202.t1 MTR_7g116360 56.627 83 36 0 258 340 191 273 4.38e-21 91.7
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 67 149 3.42e-21 92.0
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 143 225 3.42e-21 92.0
MS.gene26202.t1 MTR_8g018230 61.644 73 28 0 268 340 1 73 7.39e-21 90.9
MS.gene26202.t1 MTR_3g092130 61.644 73 28 0 268 340 1 73 3.48e-21 88.6
MS.gene26202.t1 MTR_5g061310 60.563 71 28 0 268 338 2 72 3.83e-21 86.3
MS.gene26202.t1 MTR_6g061930 56.627 83 36 0 258 340 67 149 5.14e-21 91.7
MS.gene26202.t1 MTR_6g061930 56.627 83 36 0 258 340 204 286 5.14e-21 91.7
MS.gene26202.t1 MTR_6g061930 61.644 73 28 0 268 340 1 73 1.05e-20 90.9
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 67 149 6.06e-21 92.0
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 143 225 6.06e-21 92.0
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 219 301 6.06e-21 92.0
MS.gene26202.t1 MTR_4g081010 61.644 73 28 0 268 340 1 73 1.19e-20 90.9
MS.gene26202.t1 MTR_4g080920 55.422 83 37 0 258 340 67 149 6.07e-21 90.5
MS.gene26202.t1 MTR_4g080920 60.274 73 29 0 268 340 1 73 2.92e-20 88.6
MS.gene26202.t1 MTR_4g080920 48.148 81 42 0 258 338 143 223 1.33e-14 72.8
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 67 149 8.78e-21 90.9
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 143 225 8.78e-21 90.9
MS.gene26202.t1 MTR_4g081010 61.644 73 28 0 268 340 1 73 1.69e-20 90.1
MS.gene26202.t1 MTR_4g091580 56.627 83 36 0 258 340 295 377 1.44e-20 92.8
MS.gene26202.t1 MTR_4g091580 56.627 83 36 0 258 340 67 149 3.52e-20 91.7
MS.gene26202.t1 MTR_4g091580 56.627 83 36 0 258 340 143 225 3.52e-20 91.7
MS.gene26202.t1 MTR_4g091580 56.627 83 36 0 258 340 219 301 3.52e-20 91.7
MS.gene26202.t1 MTR_4g091580 56.627 83 36 0 258 340 371 453 3.52e-20 91.7
MS.gene26202.t1 MTR_4g091580 56.627 83 36 0 258 340 447 529 3.52e-20 91.7
MS.gene26202.t1 MTR_4g091580 61.644 73 28 0 268 340 1 73 6.22e-20 90.9
MS.gene26202.t1 MTR_4g091580 56.627 83 36 0 258 340 67 149 1.44e-20 92.0
MS.gene26202.t1 MTR_4g091580 56.627 83 36 0 258 340 143 225 1.44e-20 92.0
MS.gene26202.t1 MTR_4g091580 56.627 83 36 0 258 340 295 377 1.44e-20 92.0
MS.gene26202.t1 MTR_4g091580 61.644 73 28 0 268 340 1 73 2.70e-20 91.3
MS.gene26202.t1 MTR_4g091580 55.422 83 37 0 258 340 219 301 5.01e-20 90.5
MS.gene26202.t1 MTR_4g080797 56.627 83 36 0 258 340 67 149 1.48e-20 92.0
MS.gene26202.t1 MTR_4g080797 56.627 83 36 0 258 340 143 225 1.48e-20 92.0
MS.gene26202.t1 MTR_4g080797 56.627 83 36 0 258 340 219 301 1.48e-20 92.0
MS.gene26202.t1 MTR_4g080797 56.627 83 36 0 258 340 295 377 1.48e-20 92.0
MS.gene26202.t1 MTR_4g080797 61.644 73 28 0 268 340 1 73 2.78e-20 91.3
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 67 149 1.48e-20 92.0
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 143 225 1.48e-20 92.0
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 219 301 1.48e-20 92.0
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 295 377 1.48e-20 92.0
MS.gene26202.t1 MTR_8g018230 61.644 73 28 0 268 340 1 73 2.78e-20 91.3
MS.gene26202.t1 MTR_8g081020 56.627 83 36 0 258 340 67 149 1.54e-20 91.7
MS.gene26202.t1 MTR_8g081020 56.627 83 36 0 258 340 143 225 1.54e-20 91.7
MS.gene26202.t1 MTR_8g081020 56.627 83 36 0 258 340 219 301 1.54e-20 91.7
MS.gene26202.t1 MTR_8g081020 56.627 83 36 0 258 340 295 377 1.54e-20 91.7
MS.gene26202.t1 MTR_8g081020 61.644 73 28 0 268 340 1 73 2.84e-20 90.9
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 67 149 1.57e-20 91.7
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 143 225 1.57e-20 91.7
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 219 301 1.57e-20 91.7
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 295 377 1.57e-20 91.7
MS.gene26202.t1 MTR_4g081010 61.644 73 28 0 268 340 1 73 2.95e-20 90.9
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 67 149 2.58e-20 91.7
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 143 225 2.58e-20 91.7
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 219 301 2.58e-20 91.7
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 295 377 2.58e-20 91.7
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 371 453 2.58e-20 91.7
MS.gene26202.t1 MTR_8g018230 61.644 73 28 0 268 340 1 73 4.69e-20 90.9
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 67 149 2.58e-20 91.7
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 143 225 2.58e-20 91.7
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 219 301 2.58e-20 91.7
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 295 377 2.58e-20 91.7
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 371 453 2.58e-20 91.7
MS.gene26202.t1 MTR_8g018230 61.644 73 28 0 268 340 1 73 4.69e-20 90.9
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 67 149 3.21e-20 92.0
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 143 225 3.21e-20 92.0
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 219 301 3.21e-20 92.0
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 295 377 3.21e-20 92.0
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 371 453 3.21e-20 92.0
MS.gene26202.t1 MTR_4g081010 56.627 83 36 0 258 340 447 529 3.21e-20 92.0
MS.gene26202.t1 MTR_4g081010 61.644 73 28 0 268 340 1 73 5.82e-20 91.3
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 67 149 3.24e-20 92.0
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 143 225 3.24e-20 92.0
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 219 301 3.24e-20 92.0
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 295 377 3.24e-20 92.0
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 371 453 3.24e-20 92.0
MS.gene26202.t1 MTR_8g018230 56.627 83 36 0 258 340 447 529 3.24e-20 92.0
MS.gene26202.t1 MTR_8g018230 61.644 73 28 0 268 340 1 73 5.88e-20 91.3
MS.gene26202.t1 MTR_8g479250 59.036 83 34 0 258 340 131 213 4.24e-20 89.4
MS.gene26202.t1 MTR_8g479250 45.238 84 35 1 258 341 207 279 8.60e-13 68.6
MS.gene26202.t1 MTR_4g088495 56.627 83 36 0 258 340 67 149 4.50e-20 91.7
MS.gene26202.t1 MTR_4g088495 56.627 83 36 0 258 340 143 225 4.50e-20 91.7
MS.gene26202.t1 MTR_4g088495 56.627 83 36 0 258 340 219 301 4.50e-20 91.7
MS.gene26202.t1 MTR_4g088495 56.627 83 36 0 258 340 295 377 4.50e-20 91.7
MS.gene26202.t1 MTR_4g088495 56.627 83 36 0 258 340 371 453 4.50e-20 91.7
MS.gene26202.t1 MTR_4g088495 56.627 83 36 0 258 340 447 529 4.50e-20 91.7
MS.gene26202.t1 MTR_4g088495 56.627 83 36 0 258 340 523 605 4.50e-20 91.7
MS.gene26202.t1 MTR_4g088495 56.627 83 36 0 258 340 599 681 4.50e-20 91.7
MS.gene26202.t1 MTR_4g088495 56.627 83 36 0 258 340 675 757 4.50e-20 91.7
MS.gene26202.t1 MTR_4g088495 56.627 83 36 0 258 340 751 833 4.50e-20 91.7
MS.gene26202.t1 MTR_4g088495 61.644 73 28 0 268 340 1 73 9.43e-20 90.9
MS.gene26202.t1 MTR_8g038370 27.559 254 155 10 37 269 115 360 3.53e-19 87.8
MS.gene26202.t1 MTR_1g054335 27.311 238 155 8 48 269 71 306 9.38e-19 85.9
MS.gene26202.t1 MTR_7g093600 26.891 238 156 7 48 269 72 307 2.33e-18 84.7
MS.gene26202.t1 MTR_3g091510 27.706 231 151 6 48 262 73 303 5.67e-18 84.0
MS.gene26202.t1 MTR_3g017590 25.837 209 144 6 37 235 56 263 5.73e-18 83.6
MS.gene26202.t1 MTR_5g076740 57.333 75 31 1 267 340 85 159 7.90e-18 80.1
MS.gene26202.t1 MTR_5g076760 64.912 57 20 0 278 334 5 61 2.92e-17 75.9
MS.gene26202.t1 MTR_8g027520 26.695 236 159 6 48 269 66 301 4.40e-17 81.3
MS.gene26202.t1 MTR_8g027520 26.695 236 159 6 48 269 57 292 4.93e-17 80.9
MS.gene26202.t1 MTR_7g117415 25.424 236 162 5 48 269 74 309 4.96e-17 80.9
MS.gene26202.t1 MTR_5g076350 54.054 74 33 1 268 340 8 81 2.31e-16 73.6
MS.gene26202.t1 MTR_1g008120 26.407 231 154 6 48 262 81 311 2.75e-16 79.0
MS.gene26202.t1 MTR_7g085590 25.962 208 137 4 49 252 77 271 5.40e-16 77.4
MS.gene26202.t1 MTR_5g076780 58.065 62 26 0 279 340 1 62 2.91e-15 70.1
MS.gene26202.t1 MTR_5g076340 54.795 73 31 2 268 338 9 81 4.82e-14 67.4
MS.gene26202.t1 MTR_4g009980 50.000 64 32 0 277 340 5 68 6.97e-14 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26202.t1 AT5G37930 35.000 240 146 3 37 275 113 343 1.99e-44 156
MS.gene26202.t1 AT5G37870 34.562 217 136 5 37 248 45 260 7.37e-36 131
MS.gene26202.t1 AT5G37890 34.389 221 130 6 37 248 51 265 1.14e-34 128
MS.gene26202.t1 AT1G66620 29.845 258 174 5 12 264 19 274 1.18e-34 129
MS.gene26202.t1 AT5G37910 31.963 219 140 5 37 248 38 254 9.30e-31 118
MS.gene26202.t1 AT1G66650 31.250 240 154 7 37 267 86 323 1.01e-28 114
MS.gene26202.t1 AT5G62800 32.273 220 139 7 37 248 43 260 3.95e-28 112
MS.gene26202.t1 AT5G62800 30.859 256 166 8 37 284 43 295 4.13e-28 112
MS.gene26202.t1 AT1G66630 29.317 249 154 5 37 264 49 296 4.47e-26 105
MS.gene26202.t1 AT1G66660 29.150 247 157 7 37 275 106 342 4.72e-24 101
MS.gene26202.t1 AT4G05050 56.627 83 36 0 258 340 67 149 2.81e-22 92.0
MS.gene26202.t1 AT4G05050 61.644 73 28 0 268 340 1 73 6.12e-22 90.9
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 67 149 2.81e-22 92.0
MS.gene26202.t1 AT4G05320 61.644 73 28 0 268 340 1 73 6.12e-22 90.9
MS.gene26202.t1 AT2G35635 61.644 73 28 0 268 340 1 73 6.28e-22 90.9
MS.gene26202.t1 AT1G31340 61.644 73 28 0 268 340 1 73 6.82e-22 90.9
MS.gene26202.t1 AT3G52590 61.644 73 28 0 268 340 1 73 1.33e-21 89.4
MS.gene26202.t1 AT2G36170 61.644 73 28 0 268 340 1 73 1.33e-21 89.4
MS.gene26202.t1 AT2G47110 61.644 73 28 0 268 340 1 73 1.46e-21 90.1
MS.gene26202.t1 AT2G47110 61.644 73 28 0 268 340 1 73 1.46e-21 90.1
MS.gene26202.t1 AT1G23410 61.644 73 28 0 268 340 1 73 1.50e-21 90.1
MS.gene26202.t1 AT3G62250 61.644 73 28 0 268 340 1 73 1.56e-21 90.1
MS.gene26202.t1 AT4G05050 56.627 83 36 0 258 340 67 149 1.73e-21 92.0
MS.gene26202.t1 AT4G05050 56.627 83 36 0 258 340 143 225 1.73e-21 92.0
MS.gene26202.t1 AT4G05050 61.644 73 28 0 268 340 1 73 3.43e-21 90.9
MS.gene26202.t1 AT4G05050 56.627 83 36 0 258 340 67 149 1.73e-21 92.0
MS.gene26202.t1 AT4G05050 56.627 83 36 0 258 340 143 225 1.73e-21 92.0
MS.gene26202.t1 AT4G05050 61.644 73 28 0 268 340 1 73 3.43e-21 90.9
MS.gene26202.t1 AT4G05050 56.627 83 36 0 258 340 67 149 1.73e-21 92.0
MS.gene26202.t1 AT4G05050 56.627 83 36 0 258 340 143 225 1.73e-21 92.0
MS.gene26202.t1 AT4G05050 61.644 73 28 0 268 340 1 73 3.43e-21 90.9
MS.gene26202.t1 AT4G02890 56.627 83 36 0 258 340 67 149 1.73e-21 92.0
MS.gene26202.t1 AT4G02890 56.627 83 36 0 258 340 143 225 1.73e-21 92.0
MS.gene26202.t1 AT4G02890 61.644 73 28 0 268 340 1 73 3.43e-21 90.9
MS.gene26202.t1 AT4G02890 56.627 83 36 0 258 340 67 149 1.73e-21 92.0
MS.gene26202.t1 AT4G02890 56.627 83 36 0 258 340 143 225 1.73e-21 92.0
MS.gene26202.t1 AT4G02890 61.644 73 28 0 268 340 1 73 3.43e-21 90.9
MS.gene26202.t1 AT5G37640 56.627 83 36 0 258 340 69 151 2.25e-21 93.6
MS.gene26202.t1 AT5G37640 54.217 83 38 0 258 340 145 227 1.08e-18 85.9
MS.gene26202.t1 AT5G37640 55.682 88 36 2 254 340 219 304 1.51e-17 82.4
MS.gene26202.t1 AT5G37640 53.425 73 34 0 268 340 3 75 7.76e-14 71.6
MS.gene26202.t1 AT5G03240 56.627 83 36 0 258 340 67 149 6.51e-21 92.0
MS.gene26202.t1 AT5G03240 56.627 83 36 0 258 340 143 225 6.51e-21 92.0
MS.gene26202.t1 AT5G03240 56.627 83 36 0 258 340 219 301 6.51e-21 92.0
MS.gene26202.t1 AT5G03240 61.644 73 28 0 268 340 1 73 1.25e-20 90.9
MS.gene26202.t1 AT5G03240 56.627 83 36 0 258 340 67 149 6.51e-21 92.0
MS.gene26202.t1 AT5G03240 56.627 83 36 0 258 340 143 225 6.51e-21 92.0
MS.gene26202.t1 AT5G03240 56.627 83 36 0 258 340 219 301 6.51e-21 92.0
MS.gene26202.t1 AT5G03240 61.644 73 28 0 268 340 1 73 1.25e-20 90.9
MS.gene26202.t1 AT5G03240 56.627 83 36 0 258 340 67 149 6.51e-21 92.0
MS.gene26202.t1 AT5G03240 56.627 83 36 0 258 340 143 225 6.51e-21 92.0
MS.gene26202.t1 AT5G03240 56.627 83 36 0 258 340 219 301 6.51e-21 92.0
MS.gene26202.t1 AT5G03240 61.644 73 28 0 268 340 1 73 1.25e-20 90.9
MS.gene26202.t1 AT5G20620 56.627 83 36 0 258 340 67 149 6.51e-21 92.0
MS.gene26202.t1 AT5G20620 56.627 83 36 0 258 340 143 225 6.51e-21 92.0
MS.gene26202.t1 AT5G20620 56.627 83 36 0 258 340 219 301 6.51e-21 92.0
MS.gene26202.t1 AT5G20620 61.644 73 28 0 268 340 1 73 1.25e-20 90.9
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 67 149 6.54e-21 91.7
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 143 225 6.54e-21 91.7
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 219 301 6.54e-21 91.7
MS.gene26202.t1 AT4G05320 61.644 73 28 0 268 340 1 73 1.26e-20 90.9
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 67 149 6.54e-21 91.7
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 143 225 6.54e-21 91.7
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 219 301 6.54e-21 91.7
MS.gene26202.t1 AT4G05320 61.644 73 28 0 268 340 1 73 1.26e-20 90.9
MS.gene26202.t1 AT4G02890 56.627 83 36 0 258 340 67 149 6.54e-21 91.7
MS.gene26202.t1 AT4G02890 56.627 83 36 0 258 340 143 225 6.54e-21 91.7
MS.gene26202.t1 AT4G02890 56.627 83 36 0 258 340 219 301 6.54e-21 91.7
MS.gene26202.t1 AT4G02890 61.644 73 28 0 268 340 1 73 1.26e-20 90.9
MS.gene26202.t1 AT4G02890 56.627 83 36 0 258 340 67 149 6.54e-21 91.7
MS.gene26202.t1 AT4G02890 56.627 83 36 0 258 340 143 225 6.54e-21 91.7
MS.gene26202.t1 AT4G02890 56.627 83 36 0 258 340 219 301 6.54e-21 91.7
MS.gene26202.t1 AT4G02890 61.644 73 28 0 268 340 1 73 1.26e-20 90.9
MS.gene26202.t1 AT1G65350 56.627 83 36 0 258 340 142 224 8.43e-21 91.7
MS.gene26202.t1 AT1G65350 61.644 73 28 0 268 340 1 73 1.78e-20 90.9
MS.gene26202.t1 AT1G65350 55.422 83 36 1 258 340 67 148 5.35e-18 84.0
MS.gene26202.t1 AT1G65350 45.361 97 39 1 258 340 218 314 3.71e-14 72.8
MS.gene26202.t1 AT1G55060 55.422 83 37 0 258 340 67 149 1.08e-20 89.7
MS.gene26202.t1 AT1G55060 54.217 83 38 0 258 340 143 225 4.63e-19 85.1
MS.gene26202.t1 AT1G55060 59.155 71 29 0 268 338 1 71 2.33e-18 83.2
MS.gene26202.t1 AT1G66610 25.092 271 135 6 46 248 64 334 1.13e-20 92.0
MS.gene26202.t1 AT5G20620 56.627 83 36 0 258 340 67 149 1.51e-20 92.0
MS.gene26202.t1 AT5G20620 56.627 83 36 0 258 340 143 225 1.51e-20 92.0
MS.gene26202.t1 AT5G20620 56.627 83 36 0 258 340 219 301 1.51e-20 92.0
MS.gene26202.t1 AT5G20620 56.627 83 36 0 258 340 295 377 1.51e-20 92.0
MS.gene26202.t1 AT5G20620 61.644 73 28 0 268 340 1 73 2.83e-20 91.3
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 67 149 1.55e-20 92.0
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 143 225 1.55e-20 92.0
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 219 301 1.55e-20 92.0
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 295 377 1.55e-20 92.0
MS.gene26202.t1 AT4G05320 61.644 73 28 0 268 340 1 73 2.91e-20 91.3
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 67 149 1.55e-20 92.0
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 143 225 1.55e-20 92.0
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 219 301 1.55e-20 92.0
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 295 377 1.55e-20 92.0
MS.gene26202.t1 AT4G05320 61.644 73 28 0 268 340 1 73 2.91e-20 91.3
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 67 149 1.55e-20 92.0
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 143 225 1.55e-20 92.0
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 219 301 1.55e-20 92.0
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 295 377 1.55e-20 92.0
MS.gene26202.t1 AT4G05320 61.644 73 28 0 268 340 1 73 2.91e-20 91.3
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 67 149 2.71e-20 91.7
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 143 225 2.71e-20 91.7
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 219 301 2.71e-20 91.7
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 295 377 2.71e-20 91.7
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 371 453 2.71e-20 91.7
MS.gene26202.t1 AT4G05320 61.644 73 28 0 268 340 1 73 4.91e-20 90.9
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 67 149 2.71e-20 91.7
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 143 225 2.71e-20 91.7
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 219 301 2.71e-20 91.7
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 295 377 2.71e-20 91.7
MS.gene26202.t1 AT4G05320 56.627 83 36 0 258 340 371 453 2.71e-20 91.7
MS.gene26202.t1 AT4G05320 61.644 73 28 0 268 340 1 73 4.91e-20 90.9
MS.gene26202.t1 AT3G09790 54.217 83 38 0 258 340 69 151 2.71e-18 86.3
MS.gene26202.t1 AT3G09790 53.425 73 34 0 268 340 3 75 5.00e-15 76.6
MS.gene26202.t1 AT3G09790 54.795 73 33 0 268 340 552 624 3.82e-14 73.9
MS.gene26202.t1 AT3G09790 44.578 83 41 1 260 337 230 312 2.84e-11 65.1
MS.gene26202.t1 AT3G09790 49.296 71 36 0 268 338 393 463 3.58e-11 64.7
MS.gene26202.t1 AT3G09790 54.217 83 38 0 258 340 69 151 2.71e-18 86.3
MS.gene26202.t1 AT3G09790 53.425 73 34 0 268 340 3 75 5.00e-15 76.6
MS.gene26202.t1 AT3G09790 54.795 73 33 0 268 340 552 624 3.82e-14 73.9
MS.gene26202.t1 AT3G09790 44.578 83 41 1 260 337 230 312 2.84e-11 65.1
MS.gene26202.t1 AT3G09790 49.296 71 36 0 268 338 393 463 3.58e-11 64.7
MS.gene26202.t1 AT2G41980 25.957 235 160 8 48 268 67 301 2.71e-17 81.6
MS.gene26202.t1 AT3G58040 25.847 236 161 8 48 269 70 305 4.33e-17 81.3
MS.gene26202.t1 AT3G58040 25.847 236 161 8 48 269 70 305 4.33e-17 81.3
MS.gene26202.t1 AT4G27880 26.271 236 160 7 48 269 74 309 2.50e-16 79.0
MS.gene26202.t1 AT3G61790 26.407 231 154 6 48 262 73 303 6.02e-16 78.2
MS.gene26202.t1 AT1G53930 40.602 133 66 4 213 340 34 158 9.78e-16 74.3
MS.gene26202.t1 AT3G58040 30.000 120 81 2 48 164 70 189 3.04e-15 74.3
MS.gene26202.t1 AT1G66660 27.411 197 134 6 77 265 21 216 1.01e-14 72.8
MS.gene26202.t1 AT1G53950 45.070 71 39 0 268 338 69 139 1.44e-13 67.8
MS.gene26202.t1 AT5G37900 29.143 175 108 5 85 248 50 219 4.19e-13 68.6
MS.gene26202.t1 AT1G66610 47.273 55 29 0 47 101 170 224 1.65e-11 63.9

Find 71 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATTCCATTTGGTTATTT+TGG 0.086917 5.4:+57999546 MS.gene26202:CDS
CAGCAACACTCTTTCTCTTT+TGG 0.169048 5.4:-57997586 None:intergenic
CAATAATAGTACTATGCTTT+TGG 0.209912 5.4:+57999365 MS.gene26202:CDS
CTTCTCTTGGATGTTGTAAT+TGG 0.240266 5.4:-58000095 None:intergenic
GTCAAGTATTCCGGTCTTTC+AGG 0.249125 5.4:+57997627 MS.gene26202:CDS
GGAGGCAGAGGATGAGGTGG+AGG 0.308775 5.4:-58000123 None:intergenic
CCATGTTACTGTCCCGTTAA+AGG 0.322107 5.4:+57999177 MS.gene26202:CDS
TTTCGTTTGGGCATGGCATT+TGG 0.327374 5.4:-57999086 None:intergenic
TTAGAGAGTCCCCGTGCTTA+TGG 0.337619 5.4:-57999245 None:intergenic
AACAAAATCACAACCTTTAA+CGG 0.356146 5.4:-57999190 None:intergenic
CGGTTATAGTTATGATATAT+TGG 0.367859 5.4:+57999434 MS.gene26202:CDS
GTCTGAACTCTCCACCTTCA+AGG 0.377884 5.4:-57999966 None:intergenic
TGACAGTTGTTCATAAGTTC+AGG 0.387326 5.4:-57999000 None:intergenic
TCAACCATCGTCAAGTATTC+CGG 0.394850 5.4:+57997618 MS.gene26202:CDS
GGTGGAGGGTTGCCTTCTCT+TGG 0.398143 5.4:-58000108 None:intergenic
GTTGCAATTCAGTGTGATAA+TGG 0.413314 5.4:+57998952 MS.gene26202:intron
CAATATATCATAACTATAAC+CGG 0.417047 5.4:-57999433 None:intergenic
GTTCTTCAAGAGGAAAATGA+TGG 0.445710 5.4:+57999327 MS.gene26202:CDS
TGTTGTAATTGGCGAGGGTC+TGG 0.449822 5.4:-58000084 None:intergenic
CCCCGTGCTTATGGTTGAAA+TGG 0.453443 5.4:-57999236 None:intergenic
GAGTTTCTCATGATTCCATT+TGG 0.455953 5.4:+57999537 MS.gene26202:CDS
TCTGAACTCTCCACCTTCAA+GGG 0.459451 5.4:-57999965 None:intergenic
ATCAGACGTTGTTGGTGCAC+TGG 0.461760 5.4:-58000034 None:intergenic
ACAAAATCACAACCTTTAAC+GGG 0.462017 5.4:-57999189 None:intergenic
GGACATTCTTCGGAGAAGAA+TGG 0.465579 5.4:-57999485 None:intergenic
GTAGACCGTTGGACATTCTT+CGG 0.472280 5.4:-57999495 None:intergenic
GTTCATAAGTTCAGGAAAGC+AGG 0.472993 5.4:-57998992 None:intergenic
AAAGGAAATCATCACTTTGA+CGG 0.482225 5.4:-57997563 None:intergenic
CTGAACTCTCCACCTTCAAG+GGG 0.482491 5.4:-57999964 None:intergenic
TCTAGGGGAGGCAGAGGATG+AGG 0.490679 5.4:-58000129 None:intergenic
GAGAAGAATGGAACTTCAGA+TGG 0.491114 5.4:-57999473 None:intergenic
GAAGAACCAAAATAACCAAA+TGG 0.502893 5.4:-57999552 None:intergenic
GAGGCAGAGGATGAGGTGGA+GGG 0.513534 5.4:-58000122 None:intergenic
GCTGTCATCTAGTAGCTCAT+TGG 0.513698 5.4:-58000062 None:intergenic
TTGGATGTTGTAATTGGCGA+GGG 0.519187 5.4:-58000089 None:intergenic
ATATTCATAGCACATGGTTG+TGG 0.520000 5.4:+57999932 MS.gene26202:CDS
GATGTCAACTCTTCTGAGGC+CGG 0.523835 5.4:+57999414 MS.gene26202:CDS
ACCATTTCAACCATAAGCAC+GGG 0.528271 5.4:+57999235 MS.gene26202:CDS
TCAGACGTTGTTGGTGCACT+GGG 0.533496 5.4:-58000033 None:intergenic
GTGCTTATGGTTGAAATGGT+TGG 0.537800 5.4:-57999232 None:intergenic
AGGGGAGGCAGAGGATGAGG+TGG 0.543273 5.4:-58000126 None:intergenic
TGAAGACATTGTTCTTCAAG+AGG 0.545725 5.4:+57999317 MS.gene26202:CDS
TGGCAAACATCAGACGTTGT+TGG 0.553355 5.4:-58000042 None:intergenic
CACAAGTGCTCATTGCCCGT+TGG 0.553808 5.4:+57999021 MS.gene26202:CDS
CAAACGCATACCTGAAAGAC+CGG 0.554682 5.4:-57997637 None:intergenic
CTTGGATGTTGTAATTGGCG+AGG 0.562146 5.4:-58000090 None:intergenic
CAATAAGTCAAAGTGGAAAG+AGG 0.567412 5.4:+57999127 MS.gene26202:CDS
CATTGATGTCAACTCTTCTG+AGG 0.567678 5.4:+57999410 MS.gene26202:CDS
ATGCAAATTTCTAGCTCGAG+TGG 0.567969 5.4:-57999579 None:intergenic
AGAATTCAACGAGACAATGA+AGG 0.570430 5.4:-57999289 None:intergenic
AACCATTTCAACCATAAGCA+CGG 0.578863 5.4:+57999234 MS.gene26202:CDS
TTCTTCAAGAGGAAAATGAT+GGG 0.581764 5.4:+57999328 MS.gene26202:CDS
ATAGTTATGATATATTGGCT+AGG 0.585445 5.4:+57999439 MS.gene26202:CDS
CCTTTAACGGGACAGTAACA+TGG 0.593119 5.4:-57999177 None:intergenic
TCTACTTCTAGGGGAGGCAG+AGG 0.598133 5.4:-58000135 None:intergenic
GTTGGACAACACTTCTAATG+AGG 0.599282 5.4:-57999214 None:intergenic
CAATTACAACATCCAAGAGA+AGG 0.616839 5.4:+58000096 MS.gene26202:CDS
AAGAATCTTATCCTTCACAT+TGG 0.625557 5.4:-57999996 None:intergenic
GTCTGATCTACTTCTAGGGG+AGG 0.628516 5.4:-58000141 None:intergenic
AGAAGAATGGAACTTCAGAT+GGG 0.634674 5.4:-57999472 None:intergenic
GAGTTGCTGAAGTAGACCGT+TGG 0.646802 5.4:-57999506 None:intergenic
AGTCTTACTAACATCTTCTG+CGG 0.657166 5.4:-57997536 None:intergenic
CTTCTCCGAAGAATGTCCAA+CGG 0.662024 5.4:+57999490 MS.gene26202:CDS
GAAGGATAAGATTCTTGACA+AGG 0.663625 5.4:+58000003 MS.gene26202:CDS
AGACACGATAGCCAATGTGA+AGG 0.673184 5.4:+57999985 MS.gene26202:CDS
ATGCAAATATTCATAGCACA+TGG 0.683285 5.4:+57999926 MS.gene26202:CDS
AGGGAGACAATAAGTCAAAG+TGG 0.684751 5.4:+57999120 MS.gene26202:CDS
CCATTTCAACCATAAGCACG+GGG 0.709635 5.4:+57999236 MS.gene26202:CDS
GAAGATAAGAGGTACCTTGG+GGG 0.718323 5.4:-57999604 None:intergenic
TGAACTCTCCACCTTCAAGG+GGG 0.721718 5.4:-57999963 None:intergenic
AAGACCGGAATACTTGACGA+TGG 0.745354 5.4:-57997622 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAAAATATATTTTTTTTGA+GGG + chr5.4:57997762-57997781 MS.gene26202:intron 10.0%
!!! CTCAAAAAAAATATATTTTA+GGG - chr5.4:57997763-57997782 None:intergenic 10.0%
!! AGGGAAAAAAAATAAAAATA+AGG + chr5.4:57997781-57997800 MS.gene26202:intron 15.0%
!! AGGTAGAATAAAATAAAATA+AGG - chr5.4:57998896-57998915 None:intergenic 15.0%
!! GGTAGAATAAAATAAAATAA+GGG - chr5.4:57998895-57998914 None:intergenic 15.0%
!! TATAAAAGTTCAAAAATTGA+AGG - chr5.4:57998784-57998803 None:intergenic 15.0%
!!! CCTAAAATATATTTTTTTTG+AGG + chr5.4:57997761-57997780 MS.gene26202:intron 15.0%
!!! CCTCAAAAAAAATATATTTT+AGG - chr5.4:57997764-57997783 None:intergenic 15.0%
!!! TTCATTATTGATTTATTTGT+TGG + chr5.4:57999889-57999908 MS.gene26202:intron 15.0%
!!! TTTTATTTTATTCTACCTAA+TGG + chr5.4:57998898-57998917 MS.gene26202:intron 15.0%
!! AAAAAATAAAAATAAGGCAG+AGG + chr5.4:57997787-57997806 MS.gene26202:intron 20.0%
!! AAAGAAATAACCATAAATTG+AGG - chr5.4:57997712-57997731 None:intergenic 20.0%
!! AAGAAATAACCATAAATTGA+GGG - chr5.4:57997711-57997730 None:intergenic 20.0%
!! AATACTTATTTACTCTACAT+TGG + chr5.4:57998720-57998739 MS.gene26202:intron 20.0%
!! AATGTAGAGTAAATAAGTAT+TGG - chr5.4:57998721-57998740 None:intergenic 20.0%
!! AATTAACCCAAGAAAAATTA+AGG + chr5.4:57998351-57998370 MS.gene26202:intron 20.0%
!! AATTTAGTGTATTCATGTAT+CGG + chr5.4:57997973-57997992 MS.gene26202:intron 20.0%
!! ATACTTATTTACTCTACATT+GGG + chr5.4:57998721-57998740 MS.gene26202:intron 20.0%
!! CAATATATCATAACTATAAC+CGG - chr5.4:57999436-57999455 None:intergenic 20.0%
!! GTATGAACTAAATGAAATTT+GGG + chr5.4:57998304-57998323 MS.gene26202:intron 20.0%
!! TGAAAGTCTGAATATTTATA+TGG - chr5.4:57997860-57997879 None:intergenic 20.0%
!! TGTATGAACTAAATGAAATT+TGG + chr5.4:57998303-57998322 MS.gene26202:intron 20.0%
!!! AATAATAGTACTATGCTTTT+GGG + chr5.4:57999366-57999385 MS.gene26202:CDS 20.0%
!!! GAATTTTGTAAGACTATAAT+TGG - chr5.4:57999656-57999675 None:intergenic 20.0%
!!! TATTGACTATTAAAAGTGAT+GGG + chr5.4:57997817-57997836 MS.gene26202:intron 20.0%
!!! TCTCTAATTGAATTTTCTTA+TGG + chr5.4:57999261-57999280 MS.gene26202:CDS 20.0%
!!! TGATTTTCTTAAATTATCAG+TGG - chr5.4:57997950-57997969 None:intergenic 20.0%
!!! TTATTGACTATTAAAAGTGA+TGG + chr5.4:57997816-57997835 MS.gene26202:intron 20.0%
!!! TTGTATGATTAGTTTTATGT+TGG + chr5.4:57998823-57998842 MS.gene26202:intron 20.0%
! AAAACAACGAAAGTAATGAA+AGG - chr5.4:57999632-57999651 None:intergenic 25.0%
! AAACAACGAAAGTAATGAAA+GGG - chr5.4:57999631-57999650 None:intergenic 25.0%
! AACAAAATCACAACCTTTAA+CGG - chr5.4:57999193-57999212 None:intergenic 25.0%
! ACTGATCCAAAATTGAAAAA+CGG - chr5.4:57999760-57999779 None:intergenic 25.0%
! AGAAAAAAAACAAAACACCT+TGG - chr5.4:57999863-57999882 None:intergenic 25.0%
! CGGTTATAGTTATGATATAT+TGG + chr5.4:57999434-57999453 MS.gene26202:CDS 25.0%
! GAAAAAAAACAAAACACCTT+GGG - chr5.4:57999862-57999881 None:intergenic 25.0%
! TATATGTATTTGTGCTTCAT+TGG - chr5.4:57997896-57997915 None:intergenic 25.0%
!! ATAGTTATGATATATTGGCT+AGG + chr5.4:57999439-57999458 MS.gene26202:CDS 25.0%
!! ATCCATCCTTAATTTTTCTT+GGG - chr5.4:57998360-57998379 None:intergenic 25.0%
!! ATGATGATGATGAATATAAG+TGG + chr5.4:57998623-57998642 MS.gene26202:intron 25.0%
!! ATGATTCCATTTGGTTATTT+TGG + chr5.4:57999546-57999565 MS.gene26202:CDS 25.0%
!! CAATAATAGTACTATGCTTT+TGG + chr5.4:57999365-57999384 MS.gene26202:CDS 25.0%
!! TATCCATCCTTAATTTTTCT+TGG - chr5.4:57998361-57998380 None:intergenic 25.0%
!!! AAAAAGTGCGATTTTTTGTA+GGG - chr5.4:57998057-57998076 None:intergenic 25.0%
!!! AAGGTGTTTTGTTTTTTTTC+TGG + chr5.4:57999862-57999881 MS.gene26202:intron 25.0%
!!! CTGATATTTTAGCAAATTTG+TGG - chr5.4:57998396-57998415 None:intergenic 25.0%
!!! GATTCTTCTAAAGTGAATAA+AGG - chr5.4:57998441-57998460 None:intergenic 25.0%
!!! GTATGCGTTTGATATTTTTT+AGG + chr5.4:57997649-57997668 MS.gene26202:intron 25.0%
!!! GTTTGATATTTTTTAGGAGT+GGG + chr5.4:57997655-57997674 MS.gene26202:intron 25.0%
!!! TAAAAAGTGCGATTTTTTGT+AGG - chr5.4:57998058-57998077 None:intergenic 25.0%
!!! TGTTTTCCGTTTTTCAATTT+TGG + chr5.4:57999751-57999770 MS.gene26202:intron 25.0%
AAAGGAAATCATCACTTTGA+CGG - chr5.4:57997566-57997585 None:intergenic 30.0%
AAATAAGGGATTTCTTTGCT+AGG - chr5.4:57998881-57998900 None:intergenic 30.0%
AACCCAAGAAAAATTAAGGA+TGG + chr5.4:57998355-57998374 MS.gene26202:intron 30.0%
AAGAATCTTATCCTTCACAT+TGG - chr5.4:57999999-58000018 None:intergenic 30.0%
AAGCTACAATATGAAGAGTT+TGG + chr5.4:57998214-57998233 MS.gene26202:intron 30.0%
AATGCTAGAAAGAATGTTAC+AGG + chr5.4:57998116-57998135 MS.gene26202:intron 30.0%
ACAAAATCACAACCTTTAAC+GGG - chr5.4:57999192-57999211 None:intergenic 30.0%
AGAAAGATTCATCACTAATG+AGG + chr5.4:57998572-57998591 MS.gene26202:intron 30.0%
AGATTAGACTTTGAACCATT+AGG - chr5.4:57998916-57998935 None:intergenic 30.0%
ATGCAAATATTCATAGCACA+TGG + chr5.4:57999926-57999945 MS.gene26202:CDS 30.0%
ATGCTAGAAAGAATGTTACA+GGG + chr5.4:57998117-57998136 MS.gene26202:intron 30.0%
GAAAACATAACAATCCTCTT+TGG - chr5.4:57999738-57999757 None:intergenic 30.0%
GAAGAACCAAAATAACCAAA+TGG - chr5.4:57999555-57999574 None:intergenic 30.0%
TCTTAAATTATCAGTGGTGT+CGG - chr5.4:57997944-57997963 None:intergenic 30.0%
TCTTGGGTTAATTAAGCAAA+GGG - chr5.4:57998344-57998363 None:intergenic 30.0%
TTCTTCAAGAGGAAAATGAT+GGG + chr5.4:57999328-57999347 MS.gene26202:CDS 30.0%
TTCTTGGGTTAATTAAGCAA+AGG - chr5.4:57998345-57998364 None:intergenic 30.0%
! AGCTTCTGTATTTTCACATT+GGG - chr5.4:57998199-57998218 None:intergenic 30.0%
! CCATAAATTGAGGGTATATT+CGG - chr5.4:57997702-57997721 None:intergenic 30.0%
! TAGCTTCTGTATTTTCACAT+TGG - chr5.4:57998200-57998219 None:intergenic 30.0%
! TGATGATGAATATAAGTGGT+TGG + chr5.4:57998627-57998646 MS.gene26202:intron 30.0%
!! TTAGTGTGTGTTTGTTTTCA+CGG - chr5.4:57998266-57998285 None:intergenic 30.0%
!!! CGTTTGATATTTTTTAGGAG+TGG + chr5.4:57997654-57997673 MS.gene26202:intron 30.0%
!!! GGTGAACAATGTAGTTTTTT+TGG - chr5.4:57998472-57998491 None:intergenic 30.0%
!!! GTGTTTTGTTTTTTTTCTGG+TGG + chr5.4:57999865-57999884 MS.gene26202:intron 30.0%
AAACGAAAAATATGGCTGCA+GGG + chr5.4:57999101-57999120 MS.gene26202:CDS 35.0%
AACCATTTCAACCATAAGCA+CGG + chr5.4:57999234-57999253 MS.gene26202:CDS 35.0%
AATGAAAGGGAGAAGATAAG+AGG - chr5.4:57999618-57999637 None:intergenic 35.0%
ACAGGGATTAAGCATATGTT+TGG + chr5.4:57998134-57998153 MS.gene26202:intron 35.0%
AGAAGAATGGAACTTCAGAT+GGG - chr5.4:57999475-57999494 None:intergenic 35.0%
AGAATTCAACGAGACAATGA+AGG - chr5.4:57999292-57999311 None:intergenic 35.0%
AGTCTTACTAACATCTTCTG+CGG - chr5.4:57997539-57997558 None:intergenic 35.0%
AGTTTGGAAAAACATGCGTT+TGG + chr5.4:57998230-57998249 MS.gene26202:intron 35.0%
ATATTCATAGCACATGGTTG+TGG + chr5.4:57999932-57999951 MS.gene26202:CDS 35.0%
ATGTAGACAGCAGAAAAGAA+TGG + chr5.4:57998511-57998530 MS.gene26202:intron 35.0%
CAATAAGTCAAAGTGGAAAG+AGG + chr5.4:57999127-57999146 MS.gene26202:CDS 35.0%
CAATTACAACATCCAAGAGA+AGG + chr5.4:58000096-58000115 MS.gene26202:CDS 35.0%
CCGAATATACCCTCAATTTA+TGG + chr5.4:57997699-57997718 MS.gene26202:intron 35.0%
CTTCTCTTGGATGTTGTAAT+TGG - chr5.4:58000098-58000117 None:intergenic 35.0%
GAAGGATAAGATTCTTGACA+AGG + chr5.4:58000003-58000022 MS.gene26202:CDS 35.0%
GAGTTTCTCATGATTCCATT+TGG + chr5.4:57999537-57999556 MS.gene26202:CDS 35.0%
GGAGATAGTGATTATGTTTG+AGG + chr5.4:57998648-57998667 MS.gene26202:intron 35.0%
GTATTTGTGCTTCATTGGTA+GGG - chr5.4:57997891-57997910 None:intergenic 35.0%
GTTCTTCAAGAGGAAAATGA+TGG + chr5.4:57999327-57999346 MS.gene26202:CDS 35.0%
GTTGCAATTCAGTGTGATAA+TGG + chr5.4:57998952-57998971 MS.gene26202:intron 35.0%
TGAAGACATTGTTCTTCAAG+AGG + chr5.4:57999317-57999336 MS.gene26202:CDS 35.0%
TGACAGTTGTTCATAAGTTC+AGG - chr5.4:57999003-57999022 None:intergenic 35.0%
TGTAGACAGCAGAAAAGAAT+GGG + chr5.4:57998512-57998531 MS.gene26202:intron 35.0%
TGTATTTGTGCTTCATTGGT+AGG - chr5.4:57997892-57997911 None:intergenic 35.0%
! TGCAGCCATATTTTTCGTTT+GGG - chr5.4:57999101-57999120 None:intergenic 35.0%
! TTCTTTTCTGCTGTCTACAT+AGG - chr5.4:57998511-57998530 None:intergenic 35.0%
!! ACACTCTTTCTCTTTTGGAA+AGG - chr5.4:57997584-57997603 None:intergenic 35.0%
!! CAGTTTTTCAAATGCCAAAG+AGG + chr5.4:57999721-57999740 MS.gene26202:intron 35.0%
!! TAAATAAGTATTGGCCTCCA+AGG - chr5.4:57998712-57998731 None:intergenic 35.0%
ACCATTTCAACCATAAGCAC+GGG + chr5.4:57999235-57999254 MS.gene26202:CDS 40.0%
AGAAATTTGCATAACCCCCA+AGG + chr5.4:57999590-57999609 MS.gene26202:CDS 40.0%
AGGGAGACAATAAGTCAAAG+TGG + chr5.4:57999120-57999139 MS.gene26202:CDS 40.0%
ATGCTTAGATGAGTAAGCCT+TGG + chr5.4:57998692-57998711 MS.gene26202:intron 40.0%
CAAACGAAAAATATGGCTGC+AGG + chr5.4:57999100-57999119 MS.gene26202:CDS 40.0%
CATTGATGTCAACTCTTCTG+AGG + chr5.4:57999410-57999429 MS.gene26202:CDS 40.0%
CCATGCCCAAACGAAAAATA+TGG + chr5.4:57999093-57999112 MS.gene26202:CDS 40.0%
CCCTGATGTGTTGTAATGAA+GGG + chr5.4:57999836-57999855 MS.gene26202:intron 40.0%
CCCTTCATTACAACACATCA+GGG - chr5.4:57999839-57999858 None:intergenic 40.0%
GAGAAGAATGGAACTTCAGA+TGG - chr5.4:57999476-57999495 None:intergenic 40.0%
GGAAACCAACTTGTCTCTAT+AGG + chr5.4:57998538-57998557 MS.gene26202:intron 40.0%
GTAGACAGCAGAAAAGAATG+GGG + chr5.4:57998513-57998532 MS.gene26202:intron 40.0%
GTATGCCTATAGAGACAAGT+TGG - chr5.4:57998546-57998565 None:intergenic 40.0%
GTGCTTATGGTTGAAATGGT+TGG - chr5.4:57999235-57999254 None:intergenic 40.0%
GTTCATAAGTTCAGGAAAGC+AGG - chr5.4:57998995-57999014 None:intergenic 40.0%
GTTGGACAACACTTCTAATG+AGG - chr5.4:57999217-57999236 None:intergenic 40.0%
TCAACCATCGTCAAGTATTC+CGG + chr5.4:57997618-57997637 MS.gene26202:CDS 40.0%
TGGAAAAACATGCGTTTGGT+GGG + chr5.4:57998234-57998253 MS.gene26202:intron 40.0%
TTGGAAAAACATGCGTTTGG+TGG + chr5.4:57998233-57998252 MS.gene26202:intron 40.0%
TTGGATGTTGTAATTGGCGA+GGG - chr5.4:58000092-58000111 None:intergenic 40.0%
! CAGCAACACTCTTTCTCTTT+TGG - chr5.4:57997589-57997608 None:intergenic 40.0%
! CCATATTTTTCGTTTGGGCA+TGG - chr5.4:57999096-57999115 None:intergenic 40.0%
! CTGCAGCCATATTTTTCGTT+TGG - chr5.4:57999102-57999121 None:intergenic 40.0%
! GATTTATTTGTTGGCGACTG+CGG + chr5.4:57999898-57999917 MS.gene26202:intron 40.0%
!! AGAAGATAAGAGGTACCTTG+GGG - chr5.4:57999608-57999627 None:intergenic 40.0%
!! ATGCAAATTTCTAGCTCGAG+TGG - chr5.4:57999582-57999601 None:intergenic 40.0%
!! GAGAAGATAAGAGGTACCTT+GGG - chr5.4:57999609-57999628 None:intergenic 40.0%
!! TTTGCAACGTTTTGAGCCAA+CGG - chr5.4:57999040-57999059 None:intergenic 40.0%
AAGACCGGAATACTTGACGA+TGG - chr5.4:57997625-57997644 None:intergenic 45.0%
AATTAGACGTGTCCCAGTGT+CGG - chr5.4:57998009-57998028 None:intergenic 45.0%
ACAGCAGAAAAGAATGGGGA+GGG + chr5.4:57998517-57998536 MS.gene26202:intron 45.0%
ACTGGGACACGTCTAATTTG+AGG + chr5.4:57998011-57998030 MS.gene26202:intron 45.0%
AGACACGATAGCCAATGTGA+AGG + chr5.4:57999985-58000004 MS.gene26202:CDS 45.0%
ATAGGCACATAAGACGAGGA+GGG - chr5.4:57998493-57998512 None:intergenic 45.0%
CAAACGCATACCTGAAAGAC+CGG - chr5.4:57997640-57997659 None:intergenic 45.0%
CCATGTTACTGTCCCGTTAA+AGG + chr5.4:57999177-57999196 MS.gene26202:CDS 45.0%
CCATTTCAACCATAAGCACG+GGG + chr5.4:57999236-57999255 MS.gene26202:CDS 45.0%
CCTTTAACGGGACAGTAACA+TGG - chr5.4:57999180-57999199 None:intergenic 45.0%
CTACATAGGCACATAAGACG+AGG - chr5.4:57998497-57998516 None:intergenic 45.0%
CTTAGATGAGTAAGCCTTGG+AGG + chr5.4:57998695-57998714 MS.gene26202:intron 45.0%
CTTCTCCGAAGAATGTCCAA+CGG + chr5.4:57999490-57999509 MS.gene26202:CDS 45.0%
CTTGGATGTTGTAATTGGCG+AGG - chr5.4:58000093-58000112 None:intergenic 45.0%
GCCCTGATGTGTTGTAATGA+AGG + chr5.4:57999835-57999854 MS.gene26202:intron 45.0%
GCCCTTCATTACAACACATC+AGG - chr5.4:57999840-57999859 None:intergenic 45.0%
GCTGTCATCTAGTAGCTCAT+TGG - chr5.4:58000065-58000084 None:intergenic 45.0%
GGACATTCTTCGGAGAAGAA+TGG - chr5.4:57999488-57999507 None:intergenic 45.0%
GTAGACCGTTGGACATTCTT+CGG - chr5.4:57999498-57999517 None:intergenic 45.0%
GTCAAGTATTCCGGTCTTTC+AGG + chr5.4:57997627-57997646 MS.gene26202:CDS 45.0%
TCTGAACTCTCCACCTTCAA+GGG - chr5.4:57999968-57999987 None:intergenic 45.0%
TGGCAAACATCAGACGTTGT+TGG - chr5.4:58000045-58000064 None:intergenic 45.0%
TTGTAGGGACCTATGAAGCA+CGG - chr5.4:57998042-57998061 None:intergenic 45.0%
TTTCGTTTGGGCATGGCATT+TGG - chr5.4:57999089-57999108 None:intergenic 45.0%
! TTTTCACATTGGGACTGCCT+CGG - chr5.4:57998189-57998208 None:intergenic 45.0%
!! GAAGATAAGAGGTACCTTGG+GGG - chr5.4:57999607-57999626 None:intergenic 45.0%
!! GGAGAAGATAAGAGGTACCT+TGG - chr5.4:57999610-57999629 None:intergenic 45.0%
!! GTGTGTGTTTGTTTTCACGG+TGG - chr5.4:57998263-57998282 None:intergenic 45.0%
!! TTGCAACGTTTTGAGCCAAC+GGG - chr5.4:57999039-57999058 None:intergenic 45.0%
AAAGATGACCCCCTTGAAGG+TGG + chr5.4:57999955-57999974 MS.gene26202:CDS 50.0%
ATCAGACGTTGTTGGTGCAC+TGG - chr5.4:58000037-58000056 None:intergenic 50.0%
CATAGGCACATAAGACGAGG+AGG - chr5.4:57998494-57998513 None:intergenic 50.0%
CCCCGTGCTTATGGTTGAAA+TGG - chr5.4:57999239-57999258 None:intergenic 50.0%
CCTCGGGACGCGAAATTAAA+GGG - chr5.4:57998172-57998191 None:intergenic 50.0%
CTGAACTCTCCACCTTCAAG+GGG - chr5.4:57999967-57999986 None:intergenic 50.0%
GACAGCAGAAAAGAATGGGG+AGG + chr5.4:57998516-57998535 MS.gene26202:intron 50.0%
GAGTTGCTGAAGTAGACCGT+TGG - chr5.4:57999509-57999528 None:intergenic 50.0%
GTCTGAACTCTCCACCTTCA+AGG - chr5.4:57999969-57999988 None:intergenic 50.0%
GTGTTGTAATGAAGGGCCCA+AGG + chr5.4:57999843-57999862 MS.gene26202:intron 50.0%
TCAGACGTTGTTGGTGCACT+GGG - chr5.4:58000036-58000055 None:intergenic 50.0%
TGAACTCTCCACCTTCAAGG+GGG - chr5.4:57999966-57999985 None:intergenic 50.0%
TGGAAAGATGACCCCCTTGA+AGG + chr5.4:57999952-57999971 MS.gene26202:CDS 50.0%
TGTTGTAATTGGCGAGGGTC+TGG - chr5.4:58000087-58000106 None:intergenic 50.0%
TTAGAGAGTCCCCGTGCTTA+TGG - chr5.4:57999248-57999267 None:intergenic 50.0%
TTTCACATTGGGACTGCCTC+GGG - chr5.4:57998188-57998207 None:intergenic 50.0%
!! GATGTCAACTCTTCTGAGGC+CGG + chr5.4:57999414-57999433 MS.gene26202:CDS 50.0%
CACAAGTGCTCATTGCCCGT+TGG + chr5.4:57999021-57999040 MS.gene26202:CDS 55.0%
GCCTCGGGACGCGAAATTAA+AGG - chr5.4:57998173-57998192 None:intergenic 55.0%
! CCCTTTAATTTCGCGTCCCG+AGG + chr5.4:57998169-57998188 MS.gene26202:intron 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG + chr5.4:57998030-57998049 MS.gene26202:intron 55.0%
GAGGCAGAGGATGAGGTGGA+GGG - chr5.4:58000125-58000144 None:intergenic 60.0%
GGTGGAGGGTTGCCTTCTCT+TGG - chr5.4:58000111-58000130 None:intergenic 60.0%
AGGGGAGGCAGAGGATGAGG+TGG - chr5.4:58000129-58000148 None:intergenic 65.0%
GGAGGCAGAGGATGAGGTGG+AGG - chr5.4:58000126-58000145 None:intergenic 65.0%
!! GTGTCCCAGTGTCGGCGACA+CGG - chr5.4:57998001-57998020 None:intergenic 65.0%
! GGTGCCGTGTCGCCGACACT+GGG + chr5.4:57997994-57998013 MS.gene26202:intron 70.0%
!! CGGTGCCGTGTCGCCGACAC+TGG + chr5.4:57997993-57998012 MS.gene26202:intron 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 57997496 58000150 57997496 ID=MS.gene26202
chr5.4 mRNA 57997496 58000150 57997496 ID=MS.gene26202.t1;Parent=MS.gene26202
chr5.4 exon 57997496 57997648 57997496 ID=MS.gene26202.t1.exon1;Parent=MS.gene26202.t1
chr5.4 CDS 57997496 57997648 57997496 ID=cds.MS.gene26202.t1;Parent=MS.gene26202.t1
chr5.4 exon 57998964 57999611 57998964 ID=MS.gene26202.t1.exon2;Parent=MS.gene26202.t1
chr5.4 CDS 57998964 57999611 57998964 ID=cds.MS.gene26202.t1;Parent=MS.gene26202.t1
chr5.4 exon 57999926 58000150 57999926 ID=MS.gene26202.t1.exon3;Parent=MS.gene26202.t1
chr5.4 CDS 57999926 58000150 57999926 ID=cds.MS.gene26202.t1;Parent=MS.gene26202.t1
Gene Sequence

>MS.gene26202

ATGGAGACATGCAACAAAGAAAACGAAGAGATCGTTGATTCCGCAGAAGATGTTAGTAAGACTAGTTCCGTCAAAGTGATGATTTCCTTTCCAAAAGAGAAAGAGTGTTGCTGCATTTGTCTTCAACCATCGTCAAGTATTCCGGTCTTTCAGGTATGCGTTTGATATTTTTTAGGAGTGGGAAATGAAGCTCATATGAAAATCCGAATATACCCTCAATTTATGGTTATTTCTTTTGTTTTTTTGAGCTTTTTTGTTATTTCACCCTAAAATATATTTTTTTTGAGGGAAAAAAAATAAAAATAAGGCAGAGGTAAATATTATTGACTATTAAAAGTGATGGGATAGTTACGTAAATGATCCATATAAATATTCAGACTTTCATTTTTAGTCCCTACCAATGAAGCACAAATACATATACATACACAACACGAACACTAACACGCCGACACCACTGATAATTTAAGAAAATCACACAATTTAGTGTATTCATGTATCGGTGCCGTGTCGCCGACACTGGGACACGTCTAATTTGAGGAGTGTCCGTGCTTCATAGGTCCCTACAAAAAATCGCACTTTTTAGTCTTGTAAAATTTTTTGTCAACATGTATTGCTTTAAAAATGCTAGAAAGAATGTTACAGGGATTAAGCATATGTTTGGATACACGCTGTACCCTTTAATTTCGCGTCCCGAGGCAGTCCCAATGTGAAAATACAGAAGCTACAATATGAAGAGTTTGGAAAAACATGCGTTTGGTGGGTATCCACCGTGAAAACAAACACACACTAAAAAGTTATGATTTTTTTTGTATGAACTAAATGAAATTTGGGATATTTAATAGAGACCCTTTGCTTAATTAACCCAAGAAAAATTAAGGATGGATAACATTATAACAACCACAAATTTGCTAAAATATCAGTCACTTGATTTTCTCACTTTATCCTTTATTCACTTTAGAAGAATCAAATTCAGCCAAAAAAACTACATTGTTCACCCTCCTCGTCTTATGTGCCTATGTAGACAGCAGAAAAGAATGGGGAGGGAAACCAACTTGTCTCTATAGGCATACAAAAGAAGAAAGATTCATCACTAATGAGGACTAGTAGTGAAGAGAATGAGCATGACAATGATGATGATGAATATAAGTGGTTGGAGATAGTGATTATGTTTGAGGAATCAATTTTGTTTATTATAAATGCTTAGATGAGTAAGCCTTGGAGGCCAATACTTATTTACTCTACATTGGGTTTGATATTAATTATGAATGTCTTTAATTTTGTATAACCTTCAATTTTTGAACTTTTATATGTGTACAATATGAACTTCTTGTATGATTAGTTTTATGTTGGTTATACTTTTGATTGCACAACATGCTAACAAACCTAGCAAAGAAATCCCTTATTTTATTTTATTCTACCTAATGGTTCAAAGTCTAATCTGATGACTATCTTTTATGTTGCAATTCAGTGTGATAATGGTCATATTGTTTGCTCTACCTGCTTTCCTGAACTTATGAACAACTGTCACAAGTGCTCATTGCCCGTTGGCTCAAAACGTTGCAAAGTCATTGAGAATATATCGCAATCTATCCAAATGCCATGCCCAAACGAAAAATATGGCTGCAGGGAGACAATAAGTCAAAGTGGAAAGAGGAAACATGAAGAAGAATGCATCTATGTGCCATGTTACTGTCCCGTTAAAGGTTGTGATTTTGTTGCCTCATTAGAAGTGTTGTCCAACCATTTCAACCATAAGCACGGGGACTCTCTAATTGAATTTTCTTATGGTCACTCCTTCATTGTCTCGTTGAATTCTAATGATGAAGACATTGTTCTTCAAGAGGAAAATGATGGGAAACTATTTACTCTCAATAATAGTACTATGCTTTTGGGAAATGCAGTCAATATTAGCTGCATTGATGTCAACTCTTCTGAGGCCGGTTATAGTTATGATATATTGGCTAGGTCTAAGATATCCCATCTGAAGTTCCATTCTTCTCCGAAGAATGTCCAACGGTCTACTTCAGCAACTCTTTCATCAGAGTTTCTCATGATTCCATTTGGTTATTTTGGTTCTTCTAAACCACTCGAGCTAGAAATTTGCATAACCCCCAAGGTACCTCTTATCTTCTCCCTTTCATTACTTTCGTTGTTTTTCCAATTATAGTCTTACAAAATTCTTTCATGTTTCGAATATATACTCTAGCATTTTATCTCAAATTCATCAGTTTTTCAAATGCCAAAGAGGATTGTTATGTTTTCCGTTTTTCAATTTTGGATCAGTTCTTGAAATATCAAAATTAAATTTTCTTTTATTCATTTGATCATGAAATTTGTTTGCCCTGATGTGTTGTAATGAAGGGCCCAAGGTGTTTTGTTTTTTTTCTGGTGGTTTCATTATTGATTTATTTGTTGGCGACTGCGGTGCAGATGCAAATATTCATAGCACATGGTTGTGGAAAGATGACCCCCTTGAAGGTGGAGAGTTCAGACACGATAGCCAATGTGAAGGATAAGATTCTTGACAAGGAAACGATCCCAGTGCACCAACAACGTCTGATGTTTGCCAATGAGCTACTAGATGACAGCCAGACCCTCGCCAATTACAACATCCAAGAGAAGGCAACCCTCCACCTCATCCTCTGCCTCCCCTAG

Protein sequence

>MS.gene26202.t1

METCNKENEEIVDSAEDVSKTSSVKVMISFPKEKECCCICLQPSSSIPVFQCDNGHIVCSTCFPELMNNCHKCSLPVGSKRCKVIENISQSIQMPCPNEKYGCRETISQSGKRKHEEECIYVPCYCPVKGCDFVASLEVLSNHFNHKHGDSLIEFSYGHSFIVSLNSNDEDIVLQEENDGKLFTLNNSTMLLGNAVNISCIDVNSSEAGYSYDILARSKISHLKFHSSPKNVQRSTSATLSSEFLMIPFGYFGSSKPLELEICITPKMQIFIAHGCGKMTPLKVESSDTIANVKDKILDKETIPVHQQRLMFANELLDDSQTLANYNIQEKATLHLILCLP