AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009562


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009562.t1 MTR_5g076720 70.175 228 66 2 2 227 162 389 1.76e-104 308
MS.gene009562.t1 MTR_5g076810 65.766 222 73 2 2 222 44 263 1.70e-94 279
MS.gene009562.t1 MTR_1g046640 63.801 221 78 1 2 222 90 308 2.10e-90 270
MS.gene009562.t1 MTR_5g067400 63.801 221 78 1 2 222 91 309 2.43e-89 267
MS.gene009562.t1 MTR_1g046650 63.470 219 78 1 2 220 21 237 3.47e-89 264
MS.gene009562.t1 MTR_2g038420 62.174 230 83 3 2 227 105 334 4.16e-88 265
MS.gene009562.t1 MTR_1g046650 63.470 219 78 1 2 220 90 306 5.25e-88 264
MS.gene009562.t1 MTR_1g046650 63.470 219 78 1 2 220 90 306 2.00e-87 262
MS.gene009562.t1 MTR_1g046650 63.470 219 78 1 2 220 121 337 3.30e-87 263
MS.gene009562.t1 MTR_7g024290 61.947 226 83 2 2 226 91 314 1.87e-85 257
MS.gene009562.t1 MTR_5g076505 58.559 222 91 1 2 222 87 308 8.73e-84 253
MS.gene009562.t1 MTR_2g038430 58.824 238 86 3 2 227 105 342 9.68e-83 251
MS.gene009562.t1 MTR_5g061290 57.589 224 92 1 2 222 97 320 1.14e-82 251
MS.gene009562.t1 MTR_5g076520 60.090 223 87 2 2 222 91 313 6.70e-81 246
MS.gene009562.t1 MTR_7g094390 59.361 219 87 1 2 220 252 468 1.06e-79 248
MS.gene009562.t1 MTR_5g076660 57.143 231 94 2 2 229 113 341 1.31e-76 236
MS.gene009562.t1 MTR_5g076370 54.018 224 98 2 2 222 114 335 4.70e-70 219
MS.gene009562.t1 MTR_5g076820 61.749 183 66 3 2 181 98 279 4.33e-67 209
MS.gene009562.t1 MTR_5g076540 68.841 138 43 0 2 139 91 228 5.51e-61 192
MS.gene009562.t1 MTR_5g077020 67.785 149 42 3 2 148 62 206 1.48e-57 183
MS.gene009562.t1 MTR_4g058025 70.476 105 30 1 2 105 24 128 1.87e-43 145
MS.gene009562.t1 MTR_4g094468 40.816 147 84 2 2 146 177 322 1.52e-25 102
MS.gene009562.t1 MTR_4g088485 48.101 79 41 0 144 222 128 206 2.13e-15 73.2
MS.gene009562.t1 MTR_4g088485 53.623 69 32 0 154 222 1 69 1.86e-14 70.5
MS.gene009562.t1 MTR_1g066390 48.101 79 41 0 144 222 67 145 2.46e-15 73.6
MS.gene009562.t1 MTR_1g066390 48.101 79 41 0 144 222 143 221 2.46e-15 73.6
MS.gene009562.t1 MTR_1g066390 53.623 69 32 0 154 222 1 69 1.92e-14 70.9
MS.gene009562.t1 MTR_7g116360 48.101 79 41 0 144 222 67 145 2.55e-15 73.2
MS.gene009562.t1 MTR_7g116360 48.101 79 41 0 144 222 143 221 2.55e-15 73.2
MS.gene009562.t1 MTR_7g116360 53.623 69 32 0 154 222 1 69 1.96e-14 70.9
MS.gene009562.t1 MTR_5g092700 53.623 69 32 0 154 222 1 69 5.30e-15 70.9
MS.gene009562.t1 MTR_4g073580 53.623 69 32 0 154 222 1 69 5.30e-15 70.9
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 5.49e-15 73.2
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 5.49e-15 73.2
MS.gene009562.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 3.96e-14 70.5
MS.gene009562.t1 MTR_4g080920 48.101 79 41 0 144 222 67 145 5.54e-15 72.4
MS.gene009562.t1 MTR_4g080920 52.174 69 33 0 154 222 1 69 1.81e-13 68.2
MS.gene009562.t1 MTR_6g061930 48.101 79 41 0 144 222 67 145 5.77e-15 73.2
MS.gene009562.t1 MTR_6g061930 48.101 79 41 0 144 222 204 282 5.77e-15 73.2
MS.gene009562.t1 MTR_6g061930 53.623 69 32 0 154 222 1 69 4.75e-14 70.5
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 67 145 6.64e-15 73.2
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 143 221 6.64e-15 73.2
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 219 297 6.64e-15 73.2
MS.gene009562.t1 MTR_4g081010 53.623 69 32 0 154 222 1 69 4.67e-14 70.9
MS.gene009562.t1 MTR_7g105080 53.623 69 32 0 154 222 1 69 7.30e-15 69.7
MS.gene009562.t1 MTR_3g092130 53.623 69 32 0 154 222 1 69 7.30e-15 69.7
MS.gene009562.t1 MTR_1g059690 53.623 69 32 0 154 222 1 69 7.30e-15 69.7
MS.gene009562.t1 MTR_7g116360 48.101 79 41 0 144 222 115 193 8.57e-15 72.4
MS.gene009562.t1 MTR_7g116360 48.101 79 41 0 144 222 191 269 8.57e-15 72.4
MS.gene009562.t1 MTR_7g116360 44.330 97 52 1 126 222 23 117 2.61e-14 71.2
MS.gene009562.t1 MTR_8g081020 48.101 79 41 0 144 222 67 145 9.44e-15 73.6
MS.gene009562.t1 MTR_8g081020 48.101 79 41 0 144 222 143 221 9.44e-15 73.6
MS.gene009562.t1 MTR_8g081020 48.101 79 41 0 144 222 219 297 9.44e-15 73.6
MS.gene009562.t1 MTR_8g081020 48.101 79 41 0 144 222 295 373 9.44e-15 73.6
MS.gene009562.t1 MTR_8g081020 53.623 69 32 0 154 222 1 69 6.34e-14 70.9
MS.gene009562.t1 MTR_4g091580 48.101 79 41 0 144 222 67 145 9.53e-15 73.6
MS.gene009562.t1 MTR_4g091580 48.101 79 41 0 144 222 143 221 9.53e-15 73.6
MS.gene009562.t1 MTR_4g091580 48.101 79 41 0 144 222 295 373 9.53e-15 73.6
MS.gene009562.t1 MTR_4g091580 48.101 79 41 0 144 222 219 297 1.27e-14 73.2
MS.gene009562.t1 MTR_4g091580 53.623 69 32 0 154 222 1 69 6.46e-14 70.9
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 67 145 9.81e-15 73.2
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 143 221 9.81e-15 73.2
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 219 297 9.81e-15 73.2
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 295 373 9.81e-15 73.2
MS.gene009562.t1 MTR_4g081010 53.623 69 32 0 154 222 1 69 6.65e-14 70.9
MS.gene009562.t1 MTR_4g080797 48.101 79 41 0 144 222 67 145 9.90e-15 73.2
MS.gene009562.t1 MTR_4g080797 48.101 79 41 0 144 222 143 221 9.90e-15 73.2
MS.gene009562.t1 MTR_4g080797 48.101 79 41 0 144 222 219 297 9.90e-15 73.2
MS.gene009562.t1 MTR_4g080797 48.101 79 41 0 144 222 295 373 9.90e-15 73.2
MS.gene009562.t1 MTR_4g080797 53.623 69 32 0 154 222 1 69 6.65e-14 70.9
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 9.90e-15 73.2
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 9.90e-15 73.2
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 219 297 9.90e-15 73.2
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 295 373 9.90e-15 73.2
MS.gene009562.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 6.65e-14 70.9
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 67 145 1.09e-14 72.4
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 143 221 1.09e-14 72.4
MS.gene009562.t1 MTR_4g081010 53.623 69 32 0 154 222 1 69 7.47e-14 70.1
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 1.21e-14 73.2
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 1.21e-14 73.2
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 219 297 1.21e-14 73.2
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 295 373 1.21e-14 73.2
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 371 449 1.21e-14 73.2
MS.gene009562.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 7.84e-14 70.9
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 1.21e-14 73.2
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 1.21e-14 73.2
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 219 297 1.21e-14 73.2
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 295 373 1.21e-14 73.2
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 371 449 1.21e-14 73.2
MS.gene009562.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 7.84e-14 70.9
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 1.28e-14 73.6
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 1.28e-14 73.6
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 219 297 1.28e-14 73.6
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 295 373 1.28e-14 73.6
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 371 449 1.28e-14 73.6
MS.gene009562.t1 MTR_8g018230 48.101 79 41 0 144 222 447 525 1.28e-14 73.6
MS.gene009562.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 8.33e-14 70.9
MS.gene009562.t1 MTR_4g091580 48.101 79 41 0 144 222 67 145 1.33e-14 73.2
MS.gene009562.t1 MTR_4g091580 48.101 79 41 0 144 222 143 221 1.33e-14 73.2
MS.gene009562.t1 MTR_4g091580 48.101 79 41 0 144 222 219 297 1.33e-14 73.2
MS.gene009562.t1 MTR_4g091580 48.101 79 41 0 144 222 371 449 1.33e-14 73.2
MS.gene009562.t1 MTR_4g091580 48.101 79 41 0 144 222 447 525 1.33e-14 73.2
MS.gene009562.t1 MTR_4g091580 48.101 79 41 0 144 222 295 373 5.62e-14 71.6
MS.gene009562.t1 MTR_4g091580 53.623 69 32 0 154 222 1 69 8.81e-14 70.9
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 67 145 1.33e-14 73.2
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 143 221 1.33e-14 73.2
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 219 297 1.33e-14 73.2
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 295 373 1.33e-14 73.2
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 371 449 1.33e-14 73.2
MS.gene009562.t1 MTR_4g081010 48.101 79 41 0 144 222 447 525 1.33e-14 73.2
MS.gene009562.t1 MTR_4g081010 53.623 69 32 0 154 222 1 69 8.65e-14 70.9
MS.gene009562.t1 MTR_4g073580 53.623 69 32 0 154 222 1 69 1.40e-14 70.5
MS.gene009562.t1 MTR_3g092130 53.623 69 32 0 154 222 1 69 1.70e-14 68.9
MS.gene009562.t1 MTR_8g088060 53.623 69 32 0 154 222 1 69 1.89e-14 69.3
MS.gene009562.t1 MTR_5g033960 53.623 69 32 0 154 222 1 69 2.03e-14 69.3
MS.gene009562.t1 MTR_4g088495 48.101 79 41 0 144 222 67 145 3.08e-14 72.4
MS.gene009562.t1 MTR_4g088495 48.101 79 41 0 144 222 143 221 3.08e-14 72.4
MS.gene009562.t1 MTR_4g088495 48.101 79 41 0 144 222 219 297 3.08e-14 72.4
MS.gene009562.t1 MTR_4g088495 48.101 79 41 0 144 222 295 373 3.08e-14 72.4
MS.gene009562.t1 MTR_4g088495 48.101 79 41 0 144 222 371 449 3.08e-14 72.4
MS.gene009562.t1 MTR_4g088495 48.101 79 41 0 144 222 447 525 3.08e-14 72.4
MS.gene009562.t1 MTR_4g088495 48.101 79 41 0 144 222 523 601 3.08e-14 72.4
MS.gene009562.t1 MTR_4g088495 48.101 79 41 0 144 222 599 677 3.08e-14 72.4
MS.gene009562.t1 MTR_4g088495 48.101 79 41 0 144 222 675 753 3.08e-14 72.4
MS.gene009562.t1 MTR_4g088495 48.101 79 41 0 144 222 751 829 3.08e-14 72.4
MS.gene009562.t1 MTR_4g088495 53.623 69 32 0 154 222 1 69 9.65e-14 70.9
MS.gene009562.t1 MTR_5g061310 45.205 73 39 1 156 227 4 76 1.41e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009562.t1 AT4G05050 48.101 79 41 0 144 222 67 145 6.47e-16 73.2
MS.gene009562.t1 AT4G05050 53.623 69 32 0 154 222 1 69 5.43e-15 70.9
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 67 145 6.47e-16 73.2
MS.gene009562.t1 AT4G05320 53.623 69 32 0 154 222 1 69 5.43e-15 70.9
MS.gene009562.t1 AT1G55060 45.977 87 47 0 136 222 59 145 1.43e-15 73.9
MS.gene009562.t1 AT1G55060 45.570 79 43 0 144 222 143 221 3.94e-13 67.4
MS.gene009562.t1 AT4G05050 48.101 79 41 0 144 222 67 145 2.67e-15 73.2
MS.gene009562.t1 AT4G05050 48.101 79 41 0 144 222 143 221 2.67e-15 73.2
MS.gene009562.t1 AT4G05050 53.623 69 32 0 154 222 1 69 2.05e-14 70.9
MS.gene009562.t1 AT4G05050 48.101 79 41 0 144 222 67 145 2.67e-15 73.2
MS.gene009562.t1 AT4G05050 48.101 79 41 0 144 222 143 221 2.67e-15 73.2
MS.gene009562.t1 AT4G05050 53.623 69 32 0 154 222 1 69 2.05e-14 70.9
MS.gene009562.t1 AT4G05050 48.101 79 41 0 144 222 67 145 2.67e-15 73.2
MS.gene009562.t1 AT4G05050 48.101 79 41 0 144 222 143 221 2.67e-15 73.2
MS.gene009562.t1 AT4G05050 53.623 69 32 0 154 222 1 69 2.05e-14 70.9
MS.gene009562.t1 AT4G02890 48.101 79 41 0 144 222 67 145 2.67e-15 73.2
MS.gene009562.t1 AT4G02890 48.101 79 41 0 144 222 143 221 2.67e-15 73.2
MS.gene009562.t1 AT4G02890 53.623 69 32 0 154 222 1 69 2.05e-14 70.9
MS.gene009562.t1 AT4G02890 48.101 79 41 0 144 222 67 145 2.67e-15 73.2
MS.gene009562.t1 AT4G02890 48.101 79 41 0 144 222 143 221 2.67e-15 73.2
MS.gene009562.t1 AT4G02890 53.623 69 32 0 154 222 1 69 2.05e-14 70.9
MS.gene009562.t1 AT5G03240 48.101 79 41 0 144 222 67 145 6.18e-15 73.6
MS.gene009562.t1 AT5G03240 48.101 79 41 0 144 222 143 221 6.18e-15 73.6
MS.gene009562.t1 AT5G03240 48.101 79 41 0 144 222 219 297 6.18e-15 73.6
MS.gene009562.t1 AT5G03240 53.623 69 32 0 154 222 1 69 4.35e-14 70.9
MS.gene009562.t1 AT5G03240 48.101 79 41 0 144 222 67 145 6.18e-15 73.6
MS.gene009562.t1 AT5G03240 48.101 79 41 0 144 222 143 221 6.18e-15 73.6
MS.gene009562.t1 AT5G03240 48.101 79 41 0 144 222 219 297 6.18e-15 73.6
MS.gene009562.t1 AT5G03240 53.623 69 32 0 154 222 1 69 4.35e-14 70.9
MS.gene009562.t1 AT5G03240 48.101 79 41 0 144 222 67 145 6.18e-15 73.6
MS.gene009562.t1 AT5G03240 48.101 79 41 0 144 222 143 221 6.18e-15 73.6
MS.gene009562.t1 AT5G03240 48.101 79 41 0 144 222 219 297 6.18e-15 73.6
MS.gene009562.t1 AT5G03240 53.623 69 32 0 154 222 1 69 4.35e-14 70.9
MS.gene009562.t1 AT5G20620 48.101 79 41 0 144 222 67 145 6.18e-15 73.6
MS.gene009562.t1 AT5G20620 48.101 79 41 0 144 222 143 221 6.18e-15 73.6
MS.gene009562.t1 AT5G20620 48.101 79 41 0 144 222 219 297 6.18e-15 73.6
MS.gene009562.t1 AT5G20620 53.623 69 32 0 154 222 1 69 4.35e-14 70.9
MS.gene009562.t1 AT2G35635 53.623 69 32 0 154 222 1 69 6.55e-15 70.5
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 67 145 6.56e-15 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 143 221 6.56e-15 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 219 297 6.56e-15 73.2
MS.gene009562.t1 AT4G05320 53.623 69 32 0 154 222 1 69 4.71e-14 70.9
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 67 145 6.56e-15 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 143 221 6.56e-15 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 219 297 6.56e-15 73.2
MS.gene009562.t1 AT4G05320 53.623 69 32 0 154 222 1 69 4.71e-14 70.9
MS.gene009562.t1 AT4G02890 48.101 79 41 0 144 222 67 145 6.56e-15 73.2
MS.gene009562.t1 AT4G02890 48.101 79 41 0 144 222 143 221 6.56e-15 73.2
MS.gene009562.t1 AT4G02890 48.101 79 41 0 144 222 219 297 6.56e-15 73.2
MS.gene009562.t1 AT4G02890 53.623 69 32 0 154 222 1 69 4.71e-14 70.9
MS.gene009562.t1 AT4G02890 48.101 79 41 0 144 222 67 145 6.56e-15 73.2
MS.gene009562.t1 AT4G02890 48.101 79 41 0 144 222 143 221 6.56e-15 73.2
MS.gene009562.t1 AT4G02890 48.101 79 41 0 144 222 219 297 6.56e-15 73.2
MS.gene009562.t1 AT4G02890 53.623 69 32 0 154 222 1 69 4.71e-14 70.9
MS.gene009562.t1 AT1G31340 53.623 69 32 0 154 222 1 69 7.97e-15 70.5
MS.gene009562.t1 AT1G65350 48.101 79 41 0 144 222 142 220 9.04e-15 73.2
MS.gene009562.t1 AT1G65350 53.623 69 32 0 154 222 1 69 4.40e-14 71.2
MS.gene009562.t1 AT1G65350 46.835 79 41 1 144 222 67 144 2.77e-12 65.9
MS.gene009562.t1 AT3G52590 53.623 69 32 0 154 222 1 69 9.49e-15 69.3
MS.gene009562.t1 AT2G36170 53.623 69 32 0 154 222 1 69 9.49e-15 69.3
MS.gene009562.t1 AT5G20620 48.101 79 41 0 144 222 67 145 9.74e-15 73.6
MS.gene009562.t1 AT5G20620 48.101 79 41 0 144 222 143 221 9.74e-15 73.6
MS.gene009562.t1 AT5G20620 48.101 79 41 0 144 222 219 297 9.74e-15 73.6
MS.gene009562.t1 AT5G20620 48.101 79 41 0 144 222 295 373 9.74e-15 73.6
MS.gene009562.t1 AT5G20620 53.623 69 32 0 154 222 1 69 6.54e-14 70.9
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 67 145 1.04e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 143 221 1.04e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 219 297 1.04e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 295 373 1.04e-14 73.2
MS.gene009562.t1 AT4G05320 53.623 69 32 0 154 222 1 69 6.96e-14 70.9
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 67 145 1.04e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 143 221 1.04e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 219 297 1.04e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 295 373 1.04e-14 73.2
MS.gene009562.t1 AT4G05320 53.623 69 32 0 154 222 1 69 6.96e-14 70.9
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 67 145 1.04e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 143 221 1.04e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 219 297 1.04e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 295 373 1.04e-14 73.2
MS.gene009562.t1 AT4G05320 53.623 69 32 0 154 222 1 69 6.96e-14 70.9
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 67 145 1.26e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 143 221 1.26e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 219 297 1.26e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 295 373 1.26e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 371 449 1.26e-14 73.2
MS.gene009562.t1 AT4G05320 53.623 69 32 0 154 222 1 69 8.21e-14 70.9
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 67 145 1.26e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 143 221 1.26e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 219 297 1.26e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 295 373 1.26e-14 73.2
MS.gene009562.t1 AT4G05320 48.101 79 41 0 144 222 371 449 1.26e-14 73.2
MS.gene009562.t1 AT4G05320 53.623 69 32 0 154 222 1 69 8.21e-14 70.9
MS.gene009562.t1 AT1G23410 53.623 69 32 0 154 222 1 69 1.52e-14 69.7
MS.gene009562.t1 AT2G47110 53.623 69 32 0 154 222 1 69 1.96e-14 69.3
MS.gene009562.t1 AT2G47110 53.623 69 32 0 154 222 1 69 1.96e-14 69.3
MS.gene009562.t1 AT3G62250 53.623 69 32 0 154 222 1 69 2.36e-14 68.9
MS.gene009562.t1 AT5G37640 46.835 79 42 0 144 222 69 147 2.88e-14 71.6
MS.gene009562.t1 AT5G37640 44.304 79 44 0 144 222 145 223 5.93e-12 65.1
MS.gene009562.t1 AT5G37640 46.250 80 42 1 144 222 221 300 1.58e-11 63.5
MS.gene009562.t1 AT3G09790 46.835 79 42 0 144 222 69 147 4.98e-13 68.9
MS.gene009562.t1 AT3G09790 50.000 70 35 0 153 222 2 71 1.04e-11 65.1
MS.gene009562.t1 AT3G09790 43.478 92 42 3 144 225 459 550 6.11e-11 62.8
MS.gene009562.t1 AT3G09790 46.835 79 42 0 144 222 69 147 4.98e-13 68.9
MS.gene009562.t1 AT3G09790 50.000 70 35 0 153 222 2 71 1.04e-11 65.1
MS.gene009562.t1 AT3G09790 43.478 92 42 3 144 225 459 550 6.11e-11 62.8
MS.gene009562.t1 AT5G37930 29.801 151 102 2 2 148 190 340 5.39e-13 68.2
MS.gene009562.t1 AT1G53930 46.479 71 38 0 156 226 88 158 2.33e-12 63.5

Find 51 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTGATTTCTTAACTCTA+AGG 0.248144 5.3:-62108032 None:intergenic
GTTCTTCAAGAGGAAAATTA+TGG 0.263266 5.3:+62107490 MS.gene009562:CDS
CTAGGCCCTTTACAAAGATT+TGG 0.273442 5.3:-62107993 None:intergenic
GCAGTCAATATTTGCTGCTT+TGG 0.307306 5.3:+62107556 MS.gene009562:CDS
GTCTCACTCCAGCGTTCTCT+TGG 0.353127 5.3:+62108189 MS.gene009562:CDS
ATCTTTGTAAAGGGCCTAGA+TGG 0.353834 5.3:+62107997 MS.gene009562:CDS
TACTCGGACTCGGGTGTGTC+TGG 0.357737 5.3:-62107580 None:intergenic
CATCTCGTCAACGGCGGAAA+AGG 0.365718 5.3:-62108276 None:intergenic
AGAAACTCTGATGAAAGATT+TGG 0.377110 5.3:-62107685 None:intergenic
ACTAATCGCCAATCGTCTTT+CGG 0.396763 5.3:-62108222 None:intergenic
AACAAAGTCACAACCTGAAA+AGG 0.402082 5.3:-62107353 None:intergenic
TATAAATGTTGTAGTCGAAA+AGG 0.405882 5.3:-62108155 None:intergenic
GGTTTCATCATTAGACTTCA+AGG 0.410456 5.3:-62107464 None:intergenic
AAAGGGTCAGGTTTCCATAT+AGG 0.437972 5.3:-62108137 None:intergenic
ATCAGACGTTGAGCGGCCAC+TGG 0.450646 5.3:-62108099 None:intergenic
GGGTCATACACTTTCCATCT+AGG 0.451359 5.3:-62108011 None:intergenic
GTCTGATTTCTTAACTCTAA+GGG 0.469256 5.3:-62108031 None:intergenic
TATTGCAAAGAATTTCCAAC+AGG 0.477260 5.3:+62107654 MS.gene009562:CDS
TGTTGTAGTCGAAAAGGGTC+AGG 0.478699 5.3:-62108149 None:intergenic
TCTCACTCCAGCGTTCTCTT+GGG 0.485099 5.3:+62108190 MS.gene009562:CDS
CAGATCCAAATCTTTGTAAA+GGG 0.487025 5.3:+62107988 MS.gene009562:intron
AGAGGTTCAGAAGAATCAAA+TGG 0.487848 5.3:-62107715 None:intergenic
CAATATATCATAACTATACT+CGG 0.493864 5.3:-62107596 None:intergenic
ATAAATGTTGTAGTCGAAAA+GGG 0.494936 5.3:-62108154 None:intergenic
GCAGATCCAAATCTTTGTAA+AGG 0.495328 5.3:+62107987 MS.gene009562:intron
TGAAACCATTGTTCTTCAAG+AGG 0.538905 5.3:+62107480 MS.gene009562:CDS
ACAAAGTCACAACCTGAAAA+GGG 0.540410 5.3:-62107352 None:intergenic
AGACTTCAAGGAGACAATGA+AGG 0.541721 5.3:-62107452 None:intergenic
ATGCAAATTTCTAGCTTGAG+AGG 0.547282 5.3:-62107733 None:intergenic
AGGGACAGTAACATGGCTTA+CGG 0.547857 5.3:-62107333 None:intergenic
GGTGGACAATTGTCAAATGT+TGG 0.563243 5.3:-62108249 None:intergenic
ATCATAACTATACTCGGACT+CGG 0.565356 5.3:-62107590 None:intergenic
GATTTGGTAAAGTAACCTGT+TGG 0.572413 5.3:-62107669 None:intergenic
GTCAACGGCGGAAAAGGATG+AGG 0.572483 5.3:-62108270 None:intergenic
TGCATTTCAGCGATAAACAC+GGG 0.578429 5.3:+62107398 MS.gene009562:CDS
TCATAACTATACTCGGACTC+GGG 0.578996 5.3:-62107589 None:intergenic
CTAGACGGCCGAAAGACGAT+TGG 0.584297 5.3:+62108214 MS.gene009562:CDS
CCTGAAAAGGGACAGTAACA+TGG 0.591203 5.3:-62107340 None:intergenic
TCAGACGTTGAGCGGCCACT+GGG 0.601307 5.3:-62108098 None:intergenic
AACGGCGGAAAAGGATGAGG+TGG 0.604435 5.3:-62108267 None:intergenic
GTGCATTTCAGCGATAAACA+CGG 0.612101 5.3:+62107397 MS.gene009562:CDS
AGCGTTCTCTTGGGACTAGA+CGG 0.615006 5.3:+62108199 MS.gene009562:CDS
TGAGGTGGTCATCTCGTCAA+CGG 0.620115 5.3:-62108285 None:intergenic
GTCTAGTCCCAAGAGAACGC+TGG 0.620661 5.3:-62108197 None:intergenic
TTGCATTCACGTAACCTCCA+CGG 0.623413 5.3:+62107750 MS.gene009562:CDS
GCAAAAGATCAGACGTTGAG+CGG 0.628431 5.3:-62108106 None:intergenic
AAGAGAACGCTGGAGTGAGA+CGG 0.637960 5.3:-62108187 None:intergenic
GCATTTCAGCGATAAACACG+GGG 0.695447 5.3:+62107399 MS.gene009562:CDS
GGTGGTCATCTCGTCAACGG+CGG 0.713045 5.3:-62108282 None:intergenic
GGATATAGGAAATACCGTGG+AGG 0.730393 5.3:-62107764 None:intergenic
TGACAAGACTGAGATCCCAG+TGG 0.762074 5.3:+62108083 MS.gene009562:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATATTATTACTCTTTT+AGG + chr5.3:62107529-62107548 MS.gene009562:CDS 10.0%
!!! ATTTTCTTTTATTGATTTAA+TGG + chr5.3:62107954-62107973 MS.gene009562:intron 10.0%
!! CAATATATCATAACTATACT+CGG - chr5.3:62107599-62107618 None:intergenic 20.0%
!!! CTCAAATCAAATTTTCTTAT+GGG + chr5.3:62107425-62107444 MS.gene009562:CDS 20.0%
!!! TATTGATTTAATGGAAATTG+TGG + chr5.3:62107963-62107982 MS.gene009562:intron 20.0%
!!! TCTCAAATCAAATTTTCTTA+TGG + chr5.3:62107424-62107443 MS.gene009562:CDS 20.0%
! ATAAATGTTGTAGTCGAAAA+GGG - chr5.3:62108157-62108176 None:intergenic 25.0%
! GCAAATTATCTCAAATTCAT+CGG + chr5.3:62107857-62107876 MS.gene009562:intron 25.0%
! TAAAATACCAAGATTTCACT+AGG - chr5.3:62107812-62107831 None:intergenic 25.0%
! TATAAATGTTGTAGTCGAAA+AGG - chr5.3:62108158-62108177 None:intergenic 25.0%
AAATAGCCAAAGCAAAGAAT+AGG - chr5.3:62107788-62107807 None:intergenic 30.0%
AGAAACTCTGATGAAAGATT+TGG - chr5.3:62107688-62107707 None:intergenic 30.0%
CAAAGCAAAGAATAGGATAT+AGG - chr5.3:62107781-62107800 None:intergenic 30.0%
CAGATCCAAATCTTTGTAAA+GGG + chr5.3:62107988-62108007 MS.gene009562:intron 30.0%
CTATATCCTATTCTTTGCTT+TGG + chr5.3:62107779-62107798 MS.gene009562:intron 30.0%
GTCTGATTTCTTAACTCTAA+GGG - chr5.3:62108034-62108053 None:intergenic 30.0%
GTTCTTCAAGAGGAAAATTA+TGG + chr5.3:62107490-62107509 MS.gene009562:CDS 30.0%
TATTGCAAAGAATTTCCAAC+AGG + chr5.3:62107654-62107673 MS.gene009562:CDS 30.0%
TGTCTGATTTCTTAACTCTA+AGG - chr5.3:62108035-62108054 None:intergenic 30.0%
! ATTTTCCTCTTGAAGAACAA+TGG - chr5.3:62107488-62107507 None:intergenic 30.0%
! CTATTTTCCTAGTGAAATCT+TGG + chr5.3:62107802-62107821 MS.gene009562:intron 30.0%
!! GTTTTTCAAACGCCAAAAAA+CGG + chr5.3:62107879-62107898 MS.gene009562:intron 30.0%
!!! AAACACAAACAACCGTTTTT+TGG - chr5.3:62107894-62107913 None:intergenic 30.0%
AACAAAGTCACAACCTGAAA+AGG - chr5.3:62107356-62107375 None:intergenic 35.0%
ACAAAGTCACAACCTGAAAA+GGG - chr5.3:62107355-62107374 None:intergenic 35.0%
AGAGGTTCAGAAGAATCAAA+TGG - chr5.3:62107718-62107737 None:intergenic 35.0%
ATAGGATATAGGAAATACCG+TGG - chr5.3:62107770-62107789 None:intergenic 35.0%
ATCATAACTATACTCGGACT+CGG - chr5.3:62107593-62107612 None:intergenic 35.0%
GCAGATCCAAATCTTTGTAA+AGG + chr5.3:62107987-62108006 MS.gene009562:intron 35.0%
GGTTTCATCATTAGACTTCA+AGG - chr5.3:62107467-62107486 None:intergenic 35.0%
TGAAACCATTGTTCTTCAAG+AGG + chr5.3:62107480-62107499 MS.gene009562:CDS 35.0%
! GATTTGGTAAAGTAACCTGT+TGG - chr5.3:62107672-62107691 None:intergenic 35.0%
! TTTTGCGGTAGATACCTATA+TGG + chr5.3:62108123-62108142 MS.gene009562:CDS 35.0%
!! ATGCAAATTTCTAGCTTGAG+AGG - chr5.3:62107736-62107755 None:intergenic 35.0%
AAAGGGTCAGGTTTCCATAT+AGG - chr5.3:62108140-62108159 None:intergenic 40.0%
ACTAATCGCCAATCGTCTTT+CGG - chr5.3:62108225-62108244 None:intergenic 40.0%
AGACTTCAAGGAGACAATGA+AGG - chr5.3:62107455-62107474 None:intergenic 40.0%
ATCTTTGTAAAGGGCCTAGA+TGG + chr5.3:62107997-62108016 MS.gene009562:CDS 40.0%
CTAGGCCCTTTACAAAGATT+TGG - chr5.3:62107996-62108015 None:intergenic 40.0%
GGTGGACAATTGTCAAATGT+TGG - chr5.3:62108252-62108271 None:intergenic 40.0%
GTGCATTTCAGCGATAAACA+CGG + chr5.3:62107397-62107416 MS.gene009562:CDS 40.0%
TCATAACTATACTCGGACTC+GGG - chr5.3:62107592-62107611 None:intergenic 40.0%
TGCATTTCAGCGATAAACAC+GGG + chr5.3:62107398-62107417 MS.gene009562:CDS 40.0%
! GCAGTCAATATTTGCTGCTT+TGG + chr5.3:62107556-62107575 MS.gene009562:CDS 40.0%
AGGGACAGTAACATGGCTTA+CGG - chr5.3:62107336-62107355 None:intergenic 45.0%
CCTGAAAAGGGACAGTAACA+TGG - chr5.3:62107343-62107362 None:intergenic 45.0%
GCAAAAGATCAGACGTTGAG+CGG - chr5.3:62108109-62108128 None:intergenic 45.0%
GCATTTCAGCGATAAACACG+GGG + chr5.3:62107399-62107418 MS.gene009562:CDS 45.0%
GGATATAGGAAATACCGTGG+AGG - chr5.3:62107767-62107786 None:intergenic 45.0%
GGGTCATACACTTTCCATCT+AGG - chr5.3:62108014-62108033 None:intergenic 45.0%
TGTTGTAGTCGAAAAGGGTC+AGG - chr5.3:62108152-62108171 None:intergenic 45.0%
TTGCATTCACGTAACCTCCA+CGG + chr5.3:62107750-62107769 MS.gene009562:CDS 45.0%
! CCATGTTACTGTCCCTTTTC+AGG + chr5.3:62107340-62107359 MS.gene009562:CDS 45.0%
! GCTCAACGTCTGATCTTTTG+CGG + chr5.3:62108108-62108127 MS.gene009562:CDS 45.0%
AAGAGAACGCTGGAGTGAGA+CGG - chr5.3:62108190-62108209 None:intergenic 50.0%
AGCGTTCTCTTGGGACTAGA+CGG + chr5.3:62108199-62108218 MS.gene009562:CDS 50.0%
TCTCACTCCAGCGTTCTCTT+GGG + chr5.3:62108190-62108209 MS.gene009562:CDS 50.0%
TGACAAGACTGAGATCCCAG+TGG + chr5.3:62108083-62108102 MS.gene009562:CDS 50.0%
AACGGCGGAAAAGGATGAGG+TGG - chr5.3:62108270-62108289 None:intergenic 55.0%
CATCTCGTCAACGGCGGAAA+AGG - chr5.3:62108279-62108298 None:intergenic 55.0%
CTAGACGGCCGAAAGACGAT+TGG + chr5.3:62108214-62108233 MS.gene009562:CDS 55.0%
GTCAACGGCGGAAAAGGATG+AGG - chr5.3:62108273-62108292 None:intergenic 55.0%
GTCTAGTCCCAAGAGAACGC+TGG - chr5.3:62108200-62108219 None:intergenic 55.0%
GTCTCACTCCAGCGTTCTCT+TGG + chr5.3:62108189-62108208 MS.gene009562:CDS 55.0%
ATCAGACGTTGAGCGGCCAC+TGG - chr5.3:62108102-62108121 None:intergenic 60.0%
TACTCGGACTCGGGTGTGTC+TGG - chr5.3:62107583-62107602 None:intergenic 60.0%
TCAGACGTTGAGCGGCCACT+GGG - chr5.3:62108101-62108120 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 62107313 62108299 62107313 ID=MS.gene009562
chr5.3 mRNA 62107313 62108299 62107313 ID=MS.gene009562.t1;Parent=MS.gene009562
chr5.3 exon 62107313 62107771 62107313 ID=MS.gene009562.t1.exon1;Parent=MS.gene009562.t1
chr5.3 CDS 62107313 62107771 62107313 ID=cds.MS.gene009562.t1;Parent=MS.gene009562.t1
chr5.3 exon 62107991 62108299 62107991 ID=MS.gene009562.t1.exon2;Parent=MS.gene009562.t1
chr5.3 CDS 62107991 62108299 62107991 ID=cds.MS.gene009562.t1;Parent=MS.gene009562.t1
Gene Sequence

>MS.gene009562

ATGCATGAAGAACAATGCATCCGTAAGCCATGTTACTGTCCCTTTTCAGGTTGTGACTTTGTTCAATCATCAAACATGTTTTCTGTGCATTTCAGCGATAAACACGGGGATTCTCAAATCAAATTTTCTTATGGGAAATCCTTCATTGTCTCCTTGAAGTCTAATGATGAAACCATTGTTCTTCAAGAGGAAAATTATGGCAAACTCTTTACTCTCAATAATATTATTACTCTTTTAGGAAATGCAGTCAATATTTGCTGCTTTGGTCCAGACACACCCGAGTCCGAGTATAGTTATGATATATTGTCTACGTCTCAGTTATGCAAATTGAAATTACAATCTATTGCAAAGAATTTCCAACAGGTTACTTTACCAAATCTTTCATCAGAGTTTCTTGTGATTCCATTTGATTCTTCTGAACCTCTCAAGCTAGAAATTTGCATTCACGTAACCTCCACGGTATTTCCTATATCCTATTCTTTGCTTTGGCTATTTTCCTAGTGAAATCTTGGTATTTTATTTTATGTTTTGAATTTATACTCTAGCAAATTATCTCAAATTCATCGGTTTTTCAAACGCCAAAAAACGGTTGTTTGTGTTTTCTATTTTTTGATAAATTCTTGAAGTATCATAAGTCTCAAATTTTCTTTTATTGATTTAATGGAAATTGTGGTGCAGATCCAAATCTTTGTAAAGGGCCTAGATGGAAAGTGTATGACCCTTAGAGTTAAGAAATCAGACAAGTTAGACAAACTTAAAGAGATGATTCATGACAAGACTGAGATCCCAGTGGCCGCTCAACGTCTGATCTTTTGCGGTAGATACCTATATGGAAACCTGACCCTTTTCGACTACAACATTTATAACGAATCAACCGTCTCACTCCAGCGTTCTCTTGGGACTAGACGGCCGAAAGACGATTGGCGATTAGTACATCCAACATTTGACAATTGTCCACCTCATCCTTTTCCGCCGTTGACGAGATGA

Protein sequence

>MS.gene009562.t1

MHEEQCIRKPCYCPFSGCDFVQSSNMFSVHFSDKHGDSQIKFSYGKSFIVSLKSNDETIVLQEENYGKLFTLNNIITLLGNAVNICCFGPDTPESEYSYDILSTSQLCKLKLQSIAKNFQQVTLPNLSSEFLVIPFDSSEPLKLEICIHVTSTIQIFVKGLDGKCMTLRVKKSDKLDKLKEMIHDKTEIPVAAQRLIFCGRYLYGNLTLFDYNIYNESTVSLQRSLGTRRPKDDWRLVHPTFDNCPPHPFPPLTR