AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010031


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010031.t1 MTR_5g067400 93.354 316 21 0 1 316 1 316 0.0 602
MS.gene010031.t1 MTR_1g046640 83.228 316 52 1 1 316 1 315 0.0 531
MS.gene010031.t1 MTR_1g046650 80.063 316 62 1 1 316 32 346 0.0 516
MS.gene010031.t1 MTR_1g046650 80.063 316 62 1 1 316 1 315 0.0 515
MS.gene010031.t1 MTR_7g024290 77.532 316 70 1 1 315 1 316 2.08e-174 486
MS.gene010031.t1 MTR_1g046650 79.381 291 59 1 26 316 26 315 1.13e-167 468
MS.gene010031.t1 MTR_5g076810 84.387 269 41 1 49 316 2 270 9.00e-162 452
MS.gene010031.t1 MTR_7g094390 71.885 313 88 0 3 315 164 476 2.12e-160 456
MS.gene010031.t1 MTR_5g076520 71.203 316 87 2 1 312 1 316 2.53e-158 445
MS.gene010031.t1 MTR_5g076720 68.987 316 95 1 3 315 74 389 1.65e-156 443
MS.gene010031.t1 MTR_5g076660 69.968 313 91 1 4 313 26 338 1.60e-153 434
MS.gene010031.t1 MTR_2g038430 64.000 325 104 2 4 315 18 342 1.07e-143 409
MS.gene010031.t1 MTR_5g076370 64.650 314 107 2 4 313 26 339 3.71e-143 407
MS.gene010031.t1 MTR_5g061290 63.522 318 108 3 4 315 11 326 1.50e-142 405
MS.gene010031.t1 MTR_5g076505 68.493 292 89 1 27 315 23 314 3.54e-140 399
MS.gene010031.t1 MTR_2g038420 63.722 317 110 2 4 315 18 334 6.87e-140 399
MS.gene010031.t1 MTR_5g076820 73.214 280 67 5 1 275 10 286 1.42e-138 394
MS.gene010031.t1 MTR_1g046650 77.328 247 55 1 70 316 1 246 1.02e-136 387
MS.gene010031.t1 MTR_5g076540 78.947 228 48 0 1 228 1 228 2.56e-127 363
MS.gene010031.t1 MTR_5g077020 66.162 198 54 4 53 241 17 210 2.28e-80 243
MS.gene010031.t1 MTR_4g094468 47.458 236 119 3 5 237 91 324 2.59e-69 219
MS.gene010031.t1 MTR_4g058025 75.397 126 30 1 68 192 1 126 1.02e-57 184
MS.gene010031.t1 MTR_7g085590 28.571 224 143 4 6 225 58 268 6.50e-27 107
MS.gene010031.t1 MTR_7g105080 68.421 76 24 0 241 316 1 76 6.24e-26 100
MS.gene010031.t1 MTR_3g092130 68.421 76 24 0 241 316 1 76 6.24e-26 100
MS.gene010031.t1 MTR_1g059690 68.421 76 24 0 241 316 1 76 6.24e-26 100
MS.gene010031.t1 MTR_8g088060 68.421 76 24 0 241 316 1 76 6.84e-26 101
MS.gene010031.t1 MTR_5g033960 68.421 76 24 0 241 316 1 76 7.21e-26 100
MS.gene010031.t1 MTR_3g092130 68.421 76 24 0 241 316 1 76 8.26e-26 100
MS.gene010031.t1 MTR_5g092700 68.421 76 24 0 241 316 1 76 1.25e-25 100
MS.gene010031.t1 MTR_5g092700 45.946 74 40 0 243 316 79 152 3.45e-12 63.9
MS.gene010031.t1 MTR_4g073580 68.421 76 24 0 241 316 1 76 1.25e-25 100
MS.gene010031.t1 MTR_4g073580 45.946 74 40 0 243 316 79 152 3.45e-12 63.9
MS.gene010031.t1 MTR_4g073580 68.421 76 24 0 241 316 1 76 2.94e-25 100
MS.gene010031.t1 MTR_4g088485 68.421 76 24 0 241 316 1 76 4.32e-25 100
MS.gene010031.t1 MTR_4g088485 68.421 76 24 0 241 316 138 213 4.32e-25 100
MS.gene010031.t1 MTR_4g088485 55.263 76 19 1 241 316 77 137 5.29e-16 75.9
MS.gene010031.t1 MTR_7g116360 68.421 76 24 0 241 316 1 76 5.36e-25 100
MS.gene010031.t1 MTR_7g116360 68.421 76 24 0 241 316 77 152 5.36e-25 100
MS.gene010031.t1 MTR_7g116360 68.421 76 24 0 241 316 153 228 5.36e-25 100
MS.gene010031.t1 MTR_1g066390 68.421 76 24 0 241 316 1 76 6.28e-25 100
MS.gene010031.t1 MTR_1g066390 68.421 76 24 0 241 316 77 152 6.28e-25 100
MS.gene010031.t1 MTR_1g066390 68.421 76 24 0 241 316 153 228 6.28e-25 100
MS.gene010031.t1 MTR_7g116360 62.791 86 32 0 231 316 115 200 1.32e-24 100
MS.gene010031.t1 MTR_7g116360 62.791 86 32 0 231 316 191 276 1.32e-24 100
MS.gene010031.t1 MTR_7g116360 68.421 76 24 0 241 316 49 124 1.48e-24 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 1 76 1.38e-24 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 77 152 1.38e-24 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 153 228 1.38e-24 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 1 76 1.60e-24 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 77 152 1.60e-24 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 153 228 1.60e-24 100
MS.gene010031.t1 MTR_6g061930 68.421 76 24 0 241 316 1 76 1.78e-24 100
MS.gene010031.t1 MTR_6g061930 68.421 76 24 0 241 316 77 152 1.78e-24 100
MS.gene010031.t1 MTR_6g061930 68.421 76 24 0 241 316 214 289 1.78e-24 100
MS.gene010031.t1 MTR_6g061930 52.632 76 21 1 241 316 153 213 6.99e-14 71.2
MS.gene010031.t1 MTR_4g080920 67.105 76 25 0 241 316 77 152 1.95e-24 99.4
MS.gene010031.t1 MTR_4g080920 67.105 76 25 0 241 316 1 76 3.69e-24 98.6
MS.gene010031.t1 MTR_4g080920 55.263 76 34 0 241 316 153 228 3.62e-18 82.4
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 1 76 2.52e-24 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 77 152 2.52e-24 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 153 228 2.52e-24 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 229 304 2.52e-24 100
MS.gene010031.t1 MTR_4g080797 68.421 76 24 0 241 316 1 76 6.96e-24 100
MS.gene010031.t1 MTR_4g080797 68.421 76 24 0 241 316 77 152 6.96e-24 100
MS.gene010031.t1 MTR_4g080797 68.421 76 24 0 241 316 153 228 6.96e-24 100
MS.gene010031.t1 MTR_4g080797 68.421 76 24 0 241 316 229 304 6.96e-24 100
MS.gene010031.t1 MTR_4g080797 68.421 76 24 0 241 316 305 380 6.96e-24 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 1 76 6.96e-24 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 77 152 6.96e-24 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 153 228 6.96e-24 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 229 304 6.96e-24 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 305 380 6.96e-24 100
MS.gene010031.t1 MTR_4g091580 68.421 76 24 0 241 316 1 76 7.10e-24 100
MS.gene010031.t1 MTR_4g091580 68.421 76 24 0 241 316 77 152 7.10e-24 100
MS.gene010031.t1 MTR_4g091580 68.421 76 24 0 241 316 153 228 7.10e-24 100
MS.gene010031.t1 MTR_4g091580 68.421 76 24 0 241 316 305 380 7.10e-24 100
MS.gene010031.t1 MTR_4g091580 67.105 76 25 0 241 316 229 304 2.47e-23 99.4
MS.gene010031.t1 MTR_8g081020 68.421 76 24 0 241 316 1 76 7.10e-24 100
MS.gene010031.t1 MTR_8g081020 68.421 76 24 0 241 316 77 152 7.10e-24 100
MS.gene010031.t1 MTR_8g081020 68.421 76 24 0 241 316 153 228 7.10e-24 100
MS.gene010031.t1 MTR_8g081020 68.421 76 24 0 241 316 229 304 7.10e-24 100
MS.gene010031.t1 MTR_8g081020 68.421 76 24 0 241 316 305 380 7.10e-24 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 1 76 7.54e-24 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 77 152 7.54e-24 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 153 228 7.54e-24 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 229 304 7.54e-24 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 305 380 7.54e-24 100
MS.gene010031.t1 MTR_4g091580 68.421 76 24 0 241 316 305 380 9.13e-24 101
MS.gene010031.t1 MTR_4g091580 68.421 76 24 0 241 316 1 76 2.05e-23 100
MS.gene010031.t1 MTR_4g091580 68.421 76 24 0 241 316 77 152 2.05e-23 100
MS.gene010031.t1 MTR_4g091580 68.421 76 24 0 241 316 153 228 2.05e-23 100
MS.gene010031.t1 MTR_4g091580 68.421 76 24 0 241 316 229 304 2.05e-23 100
MS.gene010031.t1 MTR_4g091580 68.421 76 24 0 241 316 381 456 2.05e-23 100
MS.gene010031.t1 MTR_4g091580 68.421 76 24 0 241 316 457 532 2.05e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 1 76 1.36e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 77 152 1.36e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 153 228 1.36e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 229 304 1.36e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 305 380 1.36e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 381 456 1.36e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 1 76 1.36e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 77 152 1.36e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 153 228 1.36e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 229 304 1.36e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 305 380 1.36e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 381 456 1.36e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 1 76 2.00e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 77 152 2.00e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 153 228 2.00e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 229 304 2.00e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 305 380 2.00e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 381 456 2.00e-23 100
MS.gene010031.t1 MTR_8g018230 68.421 76 24 0 241 316 457 532 2.00e-23 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 1 76 2.13e-23 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 77 152 2.13e-23 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 153 228 2.13e-23 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 229 304 2.13e-23 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 305 380 2.13e-23 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 381 456 2.13e-23 100
MS.gene010031.t1 MTR_4g081010 68.421 76 24 0 241 316 457 532 2.13e-23 100
MS.gene010031.t1 MTR_4g088495 68.421 76 24 0 241 316 77 152 2.90e-23 100
MS.gene010031.t1 MTR_4g088495 68.421 76 24 0 241 316 153 228 2.90e-23 100
MS.gene010031.t1 MTR_4g088495 68.421 76 24 0 241 316 229 304 2.90e-23 100
MS.gene010031.t1 MTR_4g088495 68.421 76 24 0 241 316 305 380 2.90e-23 100
MS.gene010031.t1 MTR_4g088495 68.421 76 24 0 241 316 381 456 2.90e-23 100
MS.gene010031.t1 MTR_4g088495 68.421 76 24 0 241 316 457 532 2.90e-23 100
MS.gene010031.t1 MTR_4g088495 68.421 76 24 0 241 316 533 608 2.90e-23 100
MS.gene010031.t1 MTR_4g088495 68.421 76 24 0 241 316 609 684 2.90e-23 100
MS.gene010031.t1 MTR_4g088495 68.421 76 24 0 241 316 685 760 2.90e-23 100
MS.gene010031.t1 MTR_4g088495 68.421 76 24 0 241 316 761 836 2.90e-23 100
MS.gene010031.t1 MTR_4g088495 68.421 76 24 0 241 316 1 76 3.04e-23 100
MS.gene010031.t1 MTR_5g061310 55.844 77 34 0 240 316 1 77 1.21e-20 84.7
MS.gene010031.t1 MTR_8g479250 62.791 86 32 0 231 316 131 216 1.64e-20 90.1
MS.gene010031.t1 MTR_8g479250 55.556 72 21 1 241 312 217 277 6.95e-15 74.3
MS.gene010031.t1 MTR_5g076740 58.667 75 28 2 241 312 86 160 1.33e-19 84.7
MS.gene010031.t1 MTR_5g076760 66.667 57 19 0 251 307 5 61 3.00e-19 81.3
MS.gene010031.t1 MTR_1g054335 27.419 248 159 7 10 238 57 302 1.89e-18 84.3
MS.gene010031.t1 MTR_3g017590 24.762 210 148 4 11 210 53 262 3.47e-18 83.6
MS.gene010031.t1 MTR_3g091510 27.751 209 141 4 11 209 60 268 6.39e-18 83.2
MS.gene010031.t1 MTR_5g076340 56.000 75 31 2 241 313 9 83 1.21e-17 77.0
MS.gene010031.t1 MTR_8g038370 25.714 210 146 4 11 210 112 321 1.29e-17 82.8
MS.gene010031.t1 MTR_7g117415 26.728 217 149 4 3 209 53 269 1.92e-17 81.6
MS.gene010031.t1 MTR_8g027520 33.333 135 89 1 3 137 45 178 2.11e-17 81.6
MS.gene010031.t1 MTR_8g027520 33.333 135 89 1 3 137 36 169 2.53e-17 81.3
MS.gene010031.t1 MTR_7g093600 24.514 257 171 6 10 247 58 310 2.96e-17 81.3
MS.gene010031.t1 MTR_5g076780 58.333 60 25 0 254 313 3 62 5.60e-17 74.3
MS.gene010031.t1 MTR_5g076350 52.703 74 34 1 241 313 8 81 9.59e-17 74.3
MS.gene010031.t1 MTR_1g008120 33.083 133 86 2 11 140 68 200 1.20e-16 79.7
MS.gene010031.t1 MTR_4g009980 46.970 66 35 0 250 315 5 70 1.11e-14 68.2
MS.gene010031.t1 MTR_5g076750 58.333 48 20 0 265 312 17 64 3.23e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010031.t1 AT5G37930 37.607 234 142 2 8 237 107 340 9.57e-50 169
MS.gene010031.t1 AT1G66620 34.322 236 146 4 10 237 40 274 1.43e-41 147
MS.gene010031.t1 AT5G37870 36.000 225 139 5 5 224 36 260 5.63e-41 144
MS.gene010031.t1 AT5G37890 35.714 224 140 4 5 224 42 265 4.88e-39 139
MS.gene010031.t1 AT1G66650 34.632 231 140 6 4 224 76 305 3.65e-36 133
MS.gene010031.t1 AT5G37910 32.159 227 148 3 4 224 28 254 2.55e-34 127
MS.gene010031.t1 AT1G66630 33.632 223 141 4 10 225 45 267 1.41e-33 125
MS.gene010031.t1 AT1G66660 31.855 248 157 6 2 238 94 340 4.22e-33 125
MS.gene010031.t1 AT5G62800 33.068 251 158 7 10 250 39 289 5.57e-32 122
MS.gene010031.t1 AT5G62800 31.559 263 164 6 10 256 39 301 7.42e-32 121
MS.gene010031.t1 AT2G47110 68.421 76 24 0 241 316 1 76 4.87e-26 101
MS.gene010031.t1 AT2G47110 68.421 76 24 0 241 316 1 76 4.87e-26 101
MS.gene010031.t1 AT3G62250 68.421 76 24 0 241 316 1 76 5.82e-26 101
MS.gene010031.t1 AT3G52590 68.421 76 24 0 241 316 1 76 7.49e-26 100
MS.gene010031.t1 AT2G36170 68.421 76 24 0 241 316 1 76 7.49e-26 100
MS.gene010031.t1 AT4G05050 68.421 76 24 0 241 316 1 76 8.03e-26 100
MS.gene010031.t1 AT4G05050 68.421 76 24 0 241 316 77 152 8.03e-26 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 1 76 8.03e-26 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 77 152 8.03e-26 100
MS.gene010031.t1 AT1G23410 68.421 76 24 0 241 316 1 76 8.17e-26 100
MS.gene010031.t1 AT2G35635 68.421 76 24 0 241 316 1 76 1.42e-25 100
MS.gene010031.t1 AT2G35635 44.595 74 41 0 243 316 79 152 4.22e-11 60.8
MS.gene010031.t1 AT1G31340 68.421 76 24 0 241 316 1 76 1.44e-25 100
MS.gene010031.t1 AT1G31340 45.946 74 40 0 243 316 79 152 3.77e-12 63.9
MS.gene010031.t1 AT4G05050 68.421 76 24 0 241 316 1 76 5.61e-25 100
MS.gene010031.t1 AT4G05050 68.421 76 24 0 241 316 77 152 5.61e-25 100
MS.gene010031.t1 AT4G05050 68.421 76 24 0 241 316 153 228 5.61e-25 100
MS.gene010031.t1 AT4G05050 68.421 76 24 0 241 316 1 76 5.61e-25 100
MS.gene010031.t1 AT4G05050 68.421 76 24 0 241 316 77 152 5.61e-25 100
MS.gene010031.t1 AT4G05050 68.421 76 24 0 241 316 153 228 5.61e-25 100
MS.gene010031.t1 AT4G05050 68.421 76 24 0 241 316 1 76 5.61e-25 100
MS.gene010031.t1 AT4G05050 68.421 76 24 0 241 316 77 152 5.61e-25 100
MS.gene010031.t1 AT4G05050 68.421 76 24 0 241 316 153 228 5.61e-25 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 1 76 5.61e-25 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 77 152 5.61e-25 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 153 228 5.61e-25 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 1 76 5.61e-25 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 77 152 5.61e-25 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 153 228 5.61e-25 100
MS.gene010031.t1 AT1G65350 68.421 76 24 0 241 316 1 76 1.99e-24 101
MS.gene010031.t1 AT1G65350 67.105 76 25 0 241 316 152 227 2.50e-23 98.2
MS.gene010031.t1 AT1G65350 67.105 76 24 1 241 316 77 151 1.37e-21 93.6
MS.gene010031.t1 AT1G65350 53.333 90 28 1 241 316 228 317 8.10e-17 80.1
MS.gene010031.t1 AT1G55060 67.105 76 25 0 241 316 77 152 2.10e-24 99.4
MS.gene010031.t1 AT1G55060 65.789 76 26 0 241 316 153 228 1.60e-22 94.4
MS.gene010031.t1 AT1G55060 60.526 76 30 0 241 316 1 76 2.24e-20 88.6
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 1 76 2.43e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 77 152 2.43e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 153 228 2.43e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 229 304 2.43e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 1 76 2.43e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 77 152 2.43e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 153 228 2.43e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 229 304 2.43e-24 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 1 76 2.43e-24 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 77 152 2.43e-24 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 153 228 2.43e-24 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 229 304 2.43e-24 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 1 76 2.43e-24 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 77 152 2.43e-24 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 153 228 2.43e-24 100
MS.gene010031.t1 AT4G02890 68.421 76 24 0 241 316 229 304 2.43e-24 100
MS.gene010031.t1 AT5G03240 68.421 76 24 0 241 316 1 76 2.52e-24 100
MS.gene010031.t1 AT5G03240 68.421 76 24 0 241 316 77 152 2.52e-24 100
MS.gene010031.t1 AT5G03240 68.421 76 24 0 241 316 153 228 2.52e-24 100
MS.gene010031.t1 AT5G03240 68.421 76 24 0 241 316 229 304 2.52e-24 100
MS.gene010031.t1 AT5G03240 68.421 76 24 0 241 316 1 76 2.52e-24 100
MS.gene010031.t1 AT5G03240 68.421 76 24 0 241 316 77 152 2.52e-24 100
MS.gene010031.t1 AT5G03240 68.421 76 24 0 241 316 153 228 2.52e-24 100
MS.gene010031.t1 AT5G03240 68.421 76 24 0 241 316 229 304 2.52e-24 100
MS.gene010031.t1 AT5G03240 68.421 76 24 0 241 316 1 76 2.52e-24 100
MS.gene010031.t1 AT5G03240 68.421 76 24 0 241 316 77 152 2.52e-24 100
MS.gene010031.t1 AT5G03240 68.421 76 24 0 241 316 153 228 2.52e-24 100
MS.gene010031.t1 AT5G03240 68.421 76 24 0 241 316 229 304 2.52e-24 100
MS.gene010031.t1 AT5G20620 68.421 76 24 0 241 316 1 76 2.52e-24 100
MS.gene010031.t1 AT5G20620 68.421 76 24 0 241 316 77 152 2.52e-24 100
MS.gene010031.t1 AT5G20620 68.421 76 24 0 241 316 153 228 2.52e-24 100
MS.gene010031.t1 AT5G20620 68.421 76 24 0 241 316 229 304 2.52e-24 100
MS.gene010031.t1 AT5G20620 68.421 76 24 0 241 316 1 76 7.23e-24 100
MS.gene010031.t1 AT5G20620 68.421 76 24 0 241 316 77 152 7.23e-24 100
MS.gene010031.t1 AT5G20620 68.421 76 24 0 241 316 153 228 7.23e-24 100
MS.gene010031.t1 AT5G20620 68.421 76 24 0 241 316 229 304 7.23e-24 100
MS.gene010031.t1 AT5G20620 68.421 76 24 0 241 316 305 380 7.23e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 1 76 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 77 152 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 153 228 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 229 304 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 305 380 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 1 76 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 77 152 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 153 228 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 229 304 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 305 380 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 1 76 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 77 152 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 153 228 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 229 304 7.29e-24 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 305 380 7.29e-24 100
MS.gene010031.t1 AT5G37640 60.465 86 34 0 231 316 69 154 1.11e-23 99.4
MS.gene010031.t1 AT5G37640 68.421 76 24 0 241 316 155 230 7.43e-23 97.1
MS.gene010031.t1 AT5G37640 57.895 76 32 0 241 316 3 78 3.31e-18 84.0
MS.gene010031.t1 AT5G37640 62.338 77 28 1 241 316 231 307 3.62e-18 84.0
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 1 76 1.42e-23 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 77 152 1.42e-23 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 153 228 1.42e-23 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 229 304 1.42e-23 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 305 380 1.42e-23 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 381 456 1.42e-23 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 1 76 1.42e-23 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 77 152 1.42e-23 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 153 228 1.42e-23 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 229 304 1.42e-23 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 305 380 1.42e-23 100
MS.gene010031.t1 AT4G05320 68.421 76 24 0 241 316 381 456 1.42e-23 100
MS.gene010031.t1 AT3G09790 60.465 86 34 0 231 316 69 154 8.10e-21 93.2
MS.gene010031.t1 AT3G09790 60.526 76 30 0 241 316 3 78 3.45e-19 88.6
MS.gene010031.t1 AT3G09790 58.108 74 31 0 241 314 552 625 5.19e-16 79.0
MS.gene010031.t1 AT3G09790 52.439 82 32 2 241 315 155 236 4.27e-14 73.2
MS.gene010031.t1 AT3G09790 53.165 79 32 1 241 314 238 316 3.14e-13 70.5
MS.gene010031.t1 AT3G09790 37.209 129 60 2 200 307 414 542 2.66e-11 64.7
MS.gene010031.t1 AT3G09790 52.632 76 34 1 241 314 319 394 7.55e-11 63.5
MS.gene010031.t1 AT3G09790 48.684 76 38 1 241 315 393 468 7.98e-11 63.2
MS.gene010031.t1 AT3G09790 60.465 86 34 0 231 316 69 154 8.10e-21 93.2
MS.gene010031.t1 AT3G09790 60.526 76 30 0 241 316 3 78 3.45e-19 88.6
MS.gene010031.t1 AT3G09790 58.108 74 31 0 241 314 552 625 5.19e-16 79.0
MS.gene010031.t1 AT3G09790 52.439 82 32 2 241 315 155 236 4.27e-14 73.2
MS.gene010031.t1 AT3G09790 53.165 79 32 1 241 314 238 316 3.14e-13 70.5
MS.gene010031.t1 AT3G09790 37.209 129 60 2 200 307 414 542 2.66e-11 64.7
MS.gene010031.t1 AT3G09790 52.632 76 34 1 241 314 319 394 7.55e-11 63.5
MS.gene010031.t1 AT3G09790 48.684 76 38 1 241 315 393 468 7.98e-11 63.2
MS.gene010031.t1 AT4G27880 27.273 209 142 4 11 209 61 269 2.24e-17 81.6
MS.gene010031.t1 AT3G58040 24.590 244 165 5 11 235 57 300 9.57e-17 79.7
MS.gene010031.t1 AT3G58040 24.590 244 165 5 11 235 57 300 9.57e-17 79.7
MS.gene010031.t1 AT3G61790 31.206 141 94 2 3 140 52 192 1.42e-16 79.3
MS.gene010031.t1 AT1G53930 52.703 74 35 0 240 313 85 158 1.75e-16 75.9
MS.gene010031.t1 AT2G41980 24.490 245 168 6 11 238 54 298 4.09e-16 77.8
MS.gene010031.t1 AT1G66610 27.219 169 120 3 59 224 166 334 7.26e-16 77.8
MS.gene010031.t1 AT1G66610 50.000 64 32 0 10 73 52 115 1.05e-13 71.2
MS.gene010031.t1 AT1G66660 28.934 197 128 6 53 238 21 216 1.49e-15 75.1
MS.gene010031.t1 AT3G58040 30.827 133 89 2 11 140 57 189 8.92e-15 72.8
MS.gene010031.t1 AT1G53950 39.773 88 49 1 228 311 52 139 1.72e-14 70.1
MS.gene010031.t1 AT1G66610 50.000 64 32 0 10 73 52 115 1.45e-13 69.7
MS.gene010031.t1 AT1G66610 45.833 72 39 0 6 77 153 224 4.69e-13 68.2
MS.gene010031.t1 AT5G37900 25.000 232 136 4 10 235 31 230 6.12e-13 67.8
MS.gene010031.t1 AT1G11980 42.667 75 43 0 241 315 1 75 8.25e-12 60.8

Find 77 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAACTATTCCTGTCTTTC+AGG 0.100973 5.3:+53753976 MS.gene010031:CDS
TTGCAGCAATCAAGCAAATT+AGG 0.143035 5.3:-53753941 None:intergenic
TTTGAGAATCCCCATGTTTA+TGG 0.156135 5.3:-53755262 None:intergenic
CAATAATAGATCCACGCTTT+TGG 0.272282 5.3:+53755382 MS.gene010031:CDS
CTTCTCTTGGATATTGTAAC+TGG 0.305231 5.3:-53756008 None:intergenic
TGCAGCAATCAAGCAAATTA+GGG 0.339740 5.3:-53753940 None:intergenic
AGCCTGGTCCTCCGCCTCCA+TGG 0.343575 5.3:+53756040 MS.gene010031:CDS
AAATAAGTTACACTGGAAAT+AGG 0.344851 5.3:+53755144 MS.gene010031:CDS
CGAGTATAGTTATGATATAT+TGG 0.369818 5.3:+53755451 MS.gene010031:CDS
GGCTGATGGTTGACTTCTCT+TGG 0.383938 5.3:-53756021 None:intergenic
GAGTTGCTTGTGATTCCATT+TGG 0.402141 5.3:+53755554 MS.gene010031:CDS
CCCCATGTTTATGGCTGAAA+TGG 0.405710 5.3:-53755253 None:intergenic
CTGAAAGACAGGAATAGTTA+AGG 0.406053 5.3:-53753975 None:intergenic
GCCTGGTCCTCCGCCTCCAT+GGG 0.412140 5.3:+53756041 MS.gene010031:CDS
TCAGACGTTGCTCGTGCATT+GGG 0.422840 5.3:-53755946 None:intergenic
TCCCATGGAGGCGGAGGACC+AGG 0.427876 5.3:-53756042 None:intergenic
GGAGTCAATATTTGCTGCAT+TGG 0.429462 5.3:+53755410 MS.gene010031:CDS
ATCAGACGTTGCTCGTGCAT+TGG 0.455161 5.3:-53755947 None:intergenic
TGAAAGACAGGAATAGTTAA+GGG 0.462982 5.3:-53753974 None:intergenic
TACTCGGACTCAGACGAGTT+GGG 0.465065 5.3:-53755434 None:intergenic
TGCTGGTCAGCTAGCTCCCA+TGG 0.467796 5.3:-53756057 None:intergenic
GGGGAATCGTCTTTCCAGTC+AGG 0.471810 5.3:-53755859 None:intergenic
CTGTGACTTTGCTGCATCAT+CGG 0.474992 5.3:+53755217 MS.gene010031:CDS
TGTCTGAACTCTCAACCCTC+AGG 0.476732 5.3:-53755880 None:intergenic
GTTCCTAAGTTTAGTACAGC+AGG 0.478263 5.3:-53755009 None:intergenic
AGCAAAGTCACAGCCTGAAA+GGG 0.489518 5.3:-53755207 None:intergenic
CAATATATCATAACTATACT+CGG 0.493864 5.3:-53755450 None:intergenic
CTACCTGCTGTACTAAACTT+AGG 0.496282 5.3:+53755006 MS.gene010031:CDS
GCTAGCTCCCATGGAGGCGG+AGG 0.509550 5.3:-53756048 None:intergenic
GCAAAGTCACAGCCTGAAAG+GGG 0.511418 5.3:-53755206 None:intergenic
ATGATATATTGGCTAGGTCT+CGG 0.512134 5.3:+53755462 MS.gene010031:CDS
AAAATGCATACCTGAAAGAC+AGG 0.515590 5.3:-53753986 None:intergenic
AAGAAGATTCTTGACAAGGA+AGG 0.518341 5.3:+53755920 MS.gene010031:CDS
CTTGGATATTGTAACTGGCA+AGG 0.518400 5.3:-53756003 None:intergenic
TCAGCTAGCTCCCATGGAGG+CGG 0.520530 5.3:-53756051 None:intergenic
AGAAGATTCTTGACAAGGAA+GGG 0.537085 5.3:+53755921 MS.gene010031:CDS
GTCTGAACTCTCAACCCTCA+GGG 0.537701 5.3:-53755879 None:intergenic
ATACTCGGACTCAGACGAGT+TGG 0.538574 5.3:-53755435 None:intergenic
CAGCAAAGTCACAGCCTGAA+AGG 0.542286 5.3:-53755208 None:intergenic
AGAGGTTCAGAAGAACCAAA+TGG 0.542803 5.3:-53755569 None:intergenic
TTGGATATTGTAACTGGCAA+GGG 0.543766 5.3:-53756002 None:intergenic
TGAAACCATTGTTCTTCAAG+AGG 0.543939 5.3:+53755334 MS.gene010031:CDS
GCAATCAAGCAAATTAGGGT+TGG 0.551048 5.3:-53753936 None:intergenic
ATCACAAGCAACTCTGATGA+AGG 0.553309 5.3:-53755545 None:intergenic
AGTTTCCTCTTGAAGAACAA+TGG 0.554557 5.3:-53755339 None:intergenic
GAGCAACGTCTGATCATTGA+CGG 0.559922 5.3:+53755956 MS.gene010031:CDS
GAGGCGGAGGACCAGGCTGA+TGG 0.560704 5.3:-53756035 None:intergenic
TATTGTAACTGGCAAGGGTA+CGG 0.561508 5.3:-53755997 None:intergenic
AACCATTTCAGCCATAAACA+TGG 0.562638 5.3:+53755251 MS.gene010031:CDS
GAGTTATGCAAATATCTAGC+TGG 0.565199 5.3:-53755592 None:intergenic
AGATAGCAATAGATTCTCAA+TGG 0.569736 5.3:-53755078 None:intergenic
ACCATTTCAGCCATAAACAT+GGG 0.579017 5.3:+53755252 MS.gene010031:CDS
GACTCCATTTCCCAAAAGCG+TGG 0.579995 5.3:-53755393 None:intergenic
AAATGCAAAACATGGTTGCA+AGG 0.587331 5.3:+53755118 MS.gene010031:CDS
ATGTTTATGGCTGAAATGGT+TGG 0.588725 5.3:-53755249 None:intergenic
AGAGAAGTCAACCATCAGCC+TGG 0.589888 5.3:+53756024 MS.gene010031:CDS
TGGAAAGACGATTCCCCTGA+GGG 0.592671 5.3:+53755865 MS.gene010031:CDS
AATACCTTTCAGTGTGACAA+TGG 0.597325 5.3:+53754969 MS.gene010031:intron
ATAGTTATGATATATTGGCT+AGG 0.603327 5.3:+53755456 MS.gene010031:CDS
GTTCTTCAAGAGGAAACTGA+GGG 0.606511 5.3:+53755344 MS.gene010031:CDS
AAGGAGAAAATAAGTTACAC+TGG 0.610981 5.3:+53755137 MS.gene010031:CDS
ATGCAAATATCTAGCTGGAG+AGG 0.617969 5.3:-53755587 None:intergenic
TTAGGGTTGGAAATCATCAA+AGG 0.620519 5.3:-53753923 None:intergenic
ATCTACGTAGAAGACCTGAC+TGG 0.622712 5.3:+53755845 MS.gene010031:CDS
AGATATTTGCATAACTCCCA+TGG 0.623725 5.3:+53755598 MS.gene010031:CDS
GAGTTGCTAAAGCAACCTGT+TGG 0.625946 5.3:-53755523 None:intergenic
AGACTTCAAAGAGACAATGA+AGG 0.626572 5.3:-53755306 None:intergenic
TGTTCTTCAAGAGGAAACTG+AGG 0.641132 5.3:+53755343 MS.gene010031:CDS
GAAGAAGAAGATTCTTGACA+AGG 0.649256 5.3:+53755916 MS.gene010031:CDS
CATTGACGGTAAGCTACTAG+AGG 0.652698 5.3:+53755970 MS.gene010031:CDS
CCATTTCAGCCATAAACATG+GGG 0.653718 5.3:+53755253 MS.gene010031:CDS
CTGGAAAGACGATTCCCCTG+AGG 0.658150 5.3:+53755864 MS.gene010031:CDS
TCTGAACTCTCAACCCTCAG+GGG 0.666137 5.3:-53755878 None:intergenic
CAAAGTCACAGCCTGAAAGG+GGG 0.676552 5.3:-53755205 None:intergenic
TCATGTCCAAATGCAAAACA+TGG 0.681945 5.3:+53755110 MS.gene010031:CDS
TGGTCAGCTAGCTCCCATGG+AGG 0.724865 5.3:-53756054 None:intergenic
ACTGGAAATAGGAAGCACGA+AGG 0.761690 5.3:+53755155 MS.gene010031:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAGATAAATATTAG+AGG + chr5.3:53754403-53754422 MS.gene010031:intron 10.0%
!!! TCTTTAATTTTCTAATTATT+TGG - chr5.3:53754393-53754412 None:intergenic 10.0%
!! AGAAAAAAAAAACAAAGAAA+AGG - chr5.3:53755636-53755655 None:intergenic 15.0%
!!! ATTTTCTTTTACTGATTTAA+TGG + chr5.3:53755802-53755821 MS.gene010031:intron 15.0%
!!! TCTTATTTTATTCTAACAAA+TGG + chr5.3:53754910-53754929 MS.gene010031:intron 15.0%
!! CAATATATCATAACTATACT+CGG - chr5.3:53755453-53755472 None:intergenic 20.0%
!! TTTAACGTAATTATATGTGT+CGG + chr5.3:53754140-53754159 MS.gene010031:intron 20.0%
!!! AAGAATGATTAGCTTTATAT+TGG + chr5.3:53754841-53754860 MS.gene010031:intron 20.0%
!!! ATTTTCTTAGAATTTGTGTT+GGG + chr5.3:53754279-53754298 MS.gene010031:intron 20.0%
!!! TATTTTCTTAGAATTTGTGT+TGG + chr5.3:53754278-53754297 MS.gene010031:intron 20.0%
!!! TCTCAAATCAAATTTTCTTA+TGG + chr5.3:53755278-53755297 MS.gene010031:CDS 20.0%
!!! TTGTTAGTGTTTTCTATTTT+TGG + chr5.3:53755753-53755772 MS.gene010031:intron 20.0%
! AAAAACAAAGAAAAGGAGAT+AGG - chr5.3:53755629-53755648 None:intergenic 25.0%
! AAAATAAGAGATTCATTGCA+AGG - chr5.3:53754899-53754918 None:intergenic 25.0%
! AAATAAGTTACACTGGAAAT+AGG + chr5.3:53755144-53755163 MS.gene010031:CDS 25.0%
! CGAGTATAGTTATGATATAT+TGG + chr5.3:53755451-53755470 MS.gene010031:CDS 25.0%
! CTAGATATGAGTAAATAAGT+GGG - chr5.3:53754323-53754342 None:intergenic 25.0%
! TAGATATGAGTAAATAAGTG+GGG - chr5.3:53754322-53754341 None:intergenic 25.0%
! TGTAAAAACTCAAAAGTAGA+AGG - chr5.3:53754721-53754740 None:intergenic 25.0%
! TTAACGTAATTATATGTGTC+GGG + chr5.3:53754141-53754160 MS.gene010031:intron 25.0%
!! ATAGTTATGATATATTGGCT+AGG + chr5.3:53755456-53755475 MS.gene010031:CDS 25.0%
!!! TACTGATTTAATGGTATTTG+TGG + chr5.3:53755811-53755830 MS.gene010031:intron 25.0%
!!! TTTGAGTTTTTACATGTGTA+TGG + chr5.3:53754727-53754746 MS.gene010031:intron 25.0%
!!! TTTTTGAAATGCGAAAACTA+AGG + chr5.3:53755730-53755749 MS.gene010031:intron 25.0%
AAACAGAGATAGATGCATAA+CGG + chr5.3:53754603-53754622 MS.gene010031:intron 30.0%
AAGGAGAAAATAAGTTACAC+TGG + chr5.3:53755137-53755156 MS.gene010031:CDS 30.0%
AGATAGCAATAGATTCTCAA+TGG - chr5.3:53755081-53755100 None:intergenic 30.0%
AGATATGAGTAAATAAGTGG+GGG - chr5.3:53754321-53754340 None:intergenic 30.0%
CCACTTATTTACTCATATCT+AGG + chr5.3:53754321-53754340 MS.gene010031:intron 30.0%
CCTAGATATGAGTAAATAAG+TGG - chr5.3:53754324-53754343 None:intergenic 30.0%
GGTTGCTATATCAAAGTTTA+GGG - chr5.3:53754774-53754793 None:intergenic 30.0%
TGAAAGACAGGAATAGTTAA+GGG - chr5.3:53753977-53753996 None:intergenic 30.0%
TGGTTGCTATATCAAAGTTT+AGG - chr5.3:53754775-53754794 None:intergenic 30.0%
! AAGTGTTTTGTGTCTCTATA+GGG - chr5.3:53754577-53754596 None:intergenic 30.0%
! AATAATAGATCCACGCTTTT+GGG + chr5.3:53755383-53755402 MS.gene010031:CDS 30.0%
AAAATGCATACCTGAAAGAC+AGG - chr5.3:53753989-53754008 None:intergenic 35.0%
AAATGCAAAACATGGTTGCA+AGG + chr5.3:53755118-53755137 MS.gene010031:CDS 35.0%
AACAAAGAAAAGGAGATAGG+AGG - chr5.3:53755626-53755645 None:intergenic 35.0%
AACCATTTCAGCCATAAACA+TGG + chr5.3:53755251-53755270 MS.gene010031:CDS 35.0%
AAGAAGATTCTTGACAAGGA+AGG + chr5.3:53755920-53755939 MS.gene010031:CDS 35.0%
AATACCTTTCAGTGTGACAA+TGG + chr5.3:53754969-53754988 MS.gene010031:intron 35.0%
ACCATTTCAGCCATAAACAT+GGG + chr5.3:53755252-53755271 MS.gene010031:CDS 35.0%
AGAAGATTCTTGACAAGGAA+GGG + chr5.3:53755921-53755940 MS.gene010031:CDS 35.0%
AGACTTCAAAGAGACAATGA+AGG - chr5.3:53755309-53755328 None:intergenic 35.0%
AGATATTTGCATAACTCCCA+TGG + chr5.3:53755598-53755617 MS.gene010031:CDS 35.0%
AGTTTCCTCTTGAAGAACAA+TGG - chr5.3:53755342-53755361 None:intergenic 35.0%
ATACAGAGCTTGAAACACAT+TGG - chr5.3:53754043-53754062 None:intergenic 35.0%
ATAGAGACACAAAACACTTG+AGG + chr5.3:53754578-53754597 MS.gene010031:intron 35.0%
ATGTTTATGGCTGAAATGGT+TGG - chr5.3:53755252-53755271 None:intergenic 35.0%
CTCTGTATTCAATAGTGTCA+CGG + chr5.3:53754055-53754074 MS.gene010031:intron 35.0%
CTGAAAGACAGGAATAGTTA+AGG - chr5.3:53753978-53753997 None:intergenic 35.0%
CTTAACTATTCCTGTCTTTC+AGG + chr5.3:53753976-53753995 MS.gene010031:CDS 35.0%
CTTCTCTTGGATATTGTAAC+TGG - chr5.3:53756011-53756030 None:intergenic 35.0%
GAAGAAGAAGATTCTTGACA+AGG + chr5.3:53755916-53755935 MS.gene010031:CDS 35.0%
GAGTTATGCAAATATCTAGC+TGG - chr5.3:53755595-53755614 None:intergenic 35.0%
TAGAATTTGTGTTGGGCATA+AGG + chr5.3:53754286-53754305 MS.gene010031:intron 35.0%
TATACTCATCAGATTAGGTG+TGG - chr5.3:53754189-53754208 None:intergenic 35.0%
TCATGTCCAAATGCAAAACA+TGG + chr5.3:53755110-53755129 MS.gene010031:CDS 35.0%
TGAAACCATTGTTCTTCAAG+AGG + chr5.3:53755334-53755353 MS.gene010031:CDS 35.0%
TGCAGCAATCAAGCAAATTA+GGG - chr5.3:53753943-53753962 None:intergenic 35.0%
TGTGGTATACTCATCAGATT+AGG - chr5.3:53754194-53754213 None:intergenic 35.0%
TTAGGGTTGGAAATCATCAA+AGG - chr5.3:53753926-53753945 None:intergenic 35.0%
TTATCAACAGAGTCATCGTA+AGG - chr5.3:53754102-53754121 None:intergenic 35.0%
TTGCAGCAATCAAGCAAATT+AGG - chr5.3:53753944-53753963 None:intergenic 35.0%
TTGGATATTGTAACTGGCAA+GGG - chr5.3:53756005-53756024 None:intergenic 35.0%
TTTGAGAATCCCCATGTTTA+TGG - chr5.3:53755265-53755284 None:intergenic 35.0%
! ATGATATATTGGCTAGGTCT+CGG + chr5.3:53755462-53755481 MS.gene010031:CDS 35.0%
! CAAGTGTTTTGTGTCTCTAT+AGG - chr5.3:53754578-53754597 None:intergenic 35.0%
! CAATAATAGATCCACGCTTT+TGG + chr5.3:53755382-53755401 MS.gene010031:CDS 35.0%
! CTATCTAAGATTCCTTGTCA+CGG - chr5.3:53754251-53754270 None:intergenic 35.0%
! TATCTAAGATTCCTTGTCAC+GGG - chr5.3:53754250-53754269 None:intergenic 35.0%
! TTGCAACCATGTTTTGCATT+TGG - chr5.3:53755119-53755138 None:intergenic 35.0%
ACAAAGCTGAGCATAAGATG+AGG - chr5.3:53754522-53754541 None:intergenic 40.0%
AGAGGTTCAGAAGAACCAAA+TGG - chr5.3:53755572-53755591 None:intergenic 40.0%
ATCACAAGCAACTCTGATGA+AGG - chr5.3:53755548-53755567 None:intergenic 40.0%
ATGACCATTGTCACACTGAA+AGG - chr5.3:53754976-53754995 None:intergenic 40.0%
ATGCAAATATCTAGCTGGAG+AGG - chr5.3:53755590-53755609 None:intergenic 40.0%
CCATTTCAGCCATAAACATG+GGG + chr5.3:53755253-53755272 MS.gene010031:CDS 40.0%
CTACCTGCTGTACTAAACTT+AGG + chr5.3:53755006-53755025 MS.gene010031:CDS 40.0%
CTTGGATATTGTAACTGGCA+AGG - chr5.3:53756006-53756025 None:intergenic 40.0%
GAGTTGCTTGTGATTCCATT+TGG + chr5.3:53755554-53755573 MS.gene010031:CDS 40.0%
GATAGTAATGCCGTCTTTAG+AGG - chr5.3:53754496-53754515 None:intergenic 40.0%
GCAATCAAGCAAATTAGGGT+TGG - chr5.3:53753939-53753958 None:intergenic 40.0%
GTGTCTCTATAGGGATAACT+TGG - chr5.3:53754568-53754587 None:intergenic 40.0%
GTTCCTAAGTTTAGTACAGC+AGG - chr5.3:53755012-53755031 None:intergenic 40.0%
GTTCTTCAAGAGGAAACTGA+GGG + chr5.3:53755344-53755363 MS.gene010031:CDS 40.0%
TATTGTAACTGGCAAGGGTA+CGG - chr5.3:53756000-53756019 None:intergenic 40.0%
TGTTCTTCAAGAGGAAACTG+AGG + chr5.3:53755343-53755362 MS.gene010031:CDS 40.0%
TTCTTCTCAAAACGCTACAG+CGG - chr5.3:53754815-53754834 None:intergenic 40.0%
TTGTAGGATCCAGGAAAGAA+TGG + chr5.3:53754538-53754557 MS.gene010031:intron 40.0%
! ATGCCGTCTTTAGAGGAATT+TGG - chr5.3:53754489-53754508 None:intergenic 40.0%
! ATGTCTAATCTGGAGCATGA+GGG - chr5.3:53754219-53754238 None:intergenic 40.0%
! CATCTTATGCTCAGCTTTGT+AGG + chr5.3:53754522-53754541 MS.gene010031:intron 40.0%
! CCTTGATTTTCTCGCTTTAG+AGG + chr5.3:53754461-53754480 MS.gene010031:intron 40.0%
! GAGCCAAATTCCTCTAAAGA+CGG + chr5.3:53754483-53754502 MS.gene010031:intron 40.0%
! GGAGTCAATATTTGCTGCAT+TGG + chr5.3:53755410-53755429 MS.gene010031:CDS 40.0%
!! CCTCTAAAGCGAGAAAATCA+AGG - chr5.3:53754464-53754483 None:intergenic 40.0%
AGCAAAGTCACAGCCTGAAA+GGG - chr5.3:53755210-53755229 None:intergenic 45.0%
ATCTACGTAGAAGACCTGAC+TGG + chr5.3:53755845-53755864 MS.gene010031:CDS 45.0%
CATTGACGGTAAGCTACTAG+AGG + chr5.3:53755970-53755989 MS.gene010031:CDS 45.0%
CCCCATGTTTATGGCTGAAA+TGG - chr5.3:53755256-53755275 None:intergenic 45.0%
CTGTGACTTTGCTGCATCAT+CGG + chr5.3:53755217-53755236 MS.gene010031:CDS 45.0%
GAGCAACGTCTGATCATTGA+CGG + chr5.3:53755956-53755975 MS.gene010031:CDS 45.0%
GAGTTGCTAAAGCAACCTGT+TGG - chr5.3:53755526-53755545 None:intergenic 45.0%
GGTCATGCTCATGTCTAATC+TGG - chr5.3:53754229-53754248 None:intergenic 45.0%
TACAGCGGTATAGCTAGTAG+CGG - chr5.3:53754800-53754819 None:intergenic 45.0%
TGCATAACGGTCTAGTAGTG+AGG + chr5.3:53754616-53754635 MS.gene010031:intron 45.0%
! ACTGGAAATAGGAAGCACGA+AGG + chr5.3:53755155-53755174 MS.gene010031:CDS 45.0%
! CATGTCTAATCTGGAGCATG+AGG - chr5.3:53754220-53754239 None:intergenic 45.0%
! CTTGGTTCTCCATTCTTTCC+TGG - chr5.3:53754550-53754569 None:intergenic 45.0%
! TGTCTAATCTGGAGCATGAG+GGG - chr5.3:53754218-53754237 None:intergenic 45.0%
! TTTTGCGAAGAACGTCCAAC+AGG + chr5.3:53755508-53755527 MS.gene010031:CDS 45.0%
!! AAAGGAGATAGGAGGTACCA+TGG - chr5.3:53755618-53755637 None:intergenic 45.0%
!! AAGGAGATAGGAGGTACCAT+GGG - chr5.3:53755617-53755636 None:intergenic 45.0%
!! AGATCCACGCTTTTGGGAAA+TGG + chr5.3:53755389-53755408 MS.gene010031:CDS 45.0%
AAAGGGGGCAGTAACATGGA+AGG - chr5.3:53755193-53755212 None:intergenic 50.0%
AGAGAAGTCAACCATCAGCC+TGG + chr5.3:53756024-53756043 MS.gene010031:CDS 50.0%
ATACTCGGACTCAGACGAGT+TGG - chr5.3:53755438-53755457 None:intergenic 50.0%
ATCAGACGTTGCTCGTGCAT+TGG - chr5.3:53755950-53755969 None:intergenic 50.0%
CAAAGTCACAGCCTGAAAGG+GGG - chr5.3:53755208-53755227 None:intergenic 50.0%
CACGGACACAAAACACGACA+TGG + chr5.3:53754073-53754092 MS.gene010031:intron 50.0%
CAGCAAAGTCACAGCCTGAA+AGG - chr5.3:53755211-53755230 None:intergenic 50.0%
CGGTATAGCTAGTAGCGGTA+TGG - chr5.3:53754795-53754814 None:intergenic 50.0%
GACTCCATTTCCCAAAAGCG+TGG - chr5.3:53755396-53755415 None:intergenic 50.0%
GCAAAGTCACAGCCTGAAAG+GGG - chr5.3:53755209-53755228 None:intergenic 50.0%
GTCTGAACTCTCAACCCTCA+GGG - chr5.3:53755882-53755901 None:intergenic 50.0%
TACTCGGACTCAGACGAGTT+GGG - chr5.3:53755437-53755456 None:intergenic 50.0%
TCAGACGTTGCTCGTGCATT+GGG - chr5.3:53755949-53755968 None:intergenic 50.0%
TCTGAACTCTCAACCCTCAG+GGG - chr5.3:53755881-53755900 None:intergenic 50.0%
TGGAAAGACGATTCCCCTGA+GGG + chr5.3:53755865-53755884 MS.gene010031:CDS 50.0%
TGTCTGAACTCTCAACCCTC+AGG - chr5.3:53755883-53755902 None:intergenic 50.0%
! GGCTGATGGTTGACTTCTCT+TGG - chr5.3:53756024-53756043 None:intergenic 50.0%
! GTCTAATCTGGAGCATGAGG+GGG - chr5.3:53754217-53754236 None:intergenic 50.0%
! TGCTCAGCTTTGTAGGATCC+AGG + chr5.3:53754529-53754548 MS.gene010031:intron 50.0%
CATGAGCATGACCCGTGACA+AGG + chr5.3:53754236-53754255 MS.gene010031:intron 55.0%
CCATGTTACTGCCCCCTTTC+AGG + chr5.3:53755194-53755213 MS.gene010031:CDS 55.0%
CCTGAAAGGGGGCAGTAACA+TGG - chr5.3:53755197-53755216 None:intergenic 55.0%
CTGGAAAGACGATTCCCCTG+AGG + chr5.3:53755864-53755883 MS.gene010031:CDS 55.0%
GGGGAATCGTCTTTCCAGTC+AGG - chr5.3:53755862-53755881 None:intergenic 55.0%
! GTCGGGTGTCGTGTAACACT+GGG + chr5.3:53754158-53754177 MS.gene010031:intron 55.0%
! TGTCGGGTGTCGTGTAACAC+TGG + chr5.3:53754157-53754176 MS.gene010031:intron 55.0%
! ATCTGGAGCATGAGGGGGTG+TGG - chr5.3:53754212-53754231 None:intergenic 60.0%
AGCCTGGTCCTCCGCCTCCA+TGG + chr5.3:53756040-53756059 MS.gene010031:CDS 70.0%
GAGGCGGAGGACCAGGCTGA+TGG - chr5.3:53756038-53756057 None:intergenic 70.0%
GCCTGGTCCTCCGCCTCCAT+GGG + chr5.3:53756041-53756060 MS.gene010031:CDS 70.0%
TCCCATGGAGGCGGAGGACC+AGG - chr5.3:53756045-53756064 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 53753917 53756069 53753917 ID=MS.gene010031
chr5.3 mRNA 53753917 53756069 53753917 ID=MS.gene010031.t1;Parent=MS.gene010031
chr5.3 exon 53753917 53753997 53753917 ID=MS.gene010031.t1.exon1;Parent=MS.gene010031.t1
chr5.3 CDS 53753917 53753997 53753917 ID=cds.MS.gene010031.t1;Parent=MS.gene010031.t1
chr5.3 exon 53754981 53755619 53754981 ID=MS.gene010031.t1.exon2;Parent=MS.gene010031.t1
chr5.3 CDS 53754981 53755619 53754981 ID=cds.MS.gene010031.t1;Parent=MS.gene010031.t1
chr5.3 exon 53755839 53756069 53755839 ID=MS.gene010031.t1.exon3;Parent=MS.gene010031.t1
chr5.3 CDS 53755839 53756069 53755839 ID=cds.MS.gene010031.t1;Parent=MS.gene010031.t1
Gene Sequence

>MS.gene010031

ATGGAGCCTTTGATGATTTCCAACCCTAATTTGCTTGATTGCTGCAAATGTTTTCAACCCTTAACTATTCCTGTCTTTCAGGTATGCATTTTCTTTTCATAAATTATTTTCATATGAGAAGAGCCAATGTGTTTCAAGCTCTGTATTCAATAGTGTCACGGACACAAAACACGACATGGACACCTTACGATGACTCTGTTGATAATTTGAAAAAATCACATAATTTAACGTAATTATATGTGTCGGGTGTCGTGTAACACTGGGACACGCCACACCTAATCTGATGAGTATACCACACCCCCTCATGCTCCAGATTAGACATGAGCATGACCCGTGACAAGGAATCTTAGATAGTATTTGATATTTTCTTAGAATTTGTGTTGGGCATAAGGTGAAGAATGCCCCCACTTATTTACTCATATCTAGGTCTTAACAAGTAATTCACTTTACAAGATAAATAAAGTATTATCAAACCAAATAATTAGAAAATTAAAGATAAATATTAGAGGTACATCATAACAATCAAGAATTTTTAAGTTAACGACCTTGATTTTCTCGCTTTAGAGGAGCCAAATTCCTCTAAAGACGGCATTACTATCACTCCTCATCTTATGCTCAGCTTTGTAGGATCCAGGAAAGAATGGAGAACCAAGTTATCCCTATAGAGACACAAAACACTTGAGGTGAAACAGAGATAGATGCATAACGGTCTAGTAGTGAGGAGAATGAGCATGACGACGATGAATAAGTTGTTAGAGATAGTGATTCTATTTAAGTGTGAATGTCTTTAATTTTGTATATCCTTCTACTTTTGAGTTTTTACATGTGTATGGTATGAACTTCTCTTATTGTTTCCCTAAACTTTGATATAGCAACCATACCGCTACTAGCTATACCGCTGTAGCGTTTTGAGAAGAATATATTAAGAATGATTAGCTTTATATTGGTTATACTTTTGATTACAAAACTTGCTAACAAGCCTTGCAATGAATCTCTTATTTTATTCTAACAAATGGTTCAAAGTATAATTTGATGATTTTCTTTTATGTTGCAATACCTTTCAGTGTGACAATGGTCATATTGTTTGCTCTACCTGCTGTACTAAACTTAGGAACAAATGTCATGAGTGCTCGTTGCGCATTAGCTCAAAACGTTGTAAAGCCATTGAGAATCTATTGCTATCTATCGAAATGTCATGTCCAAATGCAAAACATGGTTGCAAGGAGAAAATAAGTTACACTGGAAATAGGAAGCACGAAGGCGAATGCATCTACCTTCCATGTTACTGCCCCCTTTCAGGCTGTGACTTTGCTGCATCATCGGAAGTGTTGTCCAACCATTTCAGCCATAAACATGGGGATTCTCAAATCAAATTTTCTTATGGTCACTCCTTCATTGTCTCTTTGAAGTCTAACGATGAAACCATTGTTCTTCAAGAGGAAACTGAGGGAAAACTATTTATTCTCAATAATAGATCCACGCTTTTGGGAAATGGAGTCAATATTTGCTGCATTGGTCCCAACTCGTCTGAGTCCGAGTATAGTTATGATATATTGGCTAGGTCTCGGATATGCAAACTGACATTACAGTCTTTTGCGAAGAACGTCCAACAGGTTGCTTTAGCAACTCCTTCATCAGAGTTGCTTGTGATTCCATTTGGTTCTTCTGAACCTCTCCAGCTAGATATTTGCATAACTCCCATGGTACCTCCTATCTCCTTTTCTTTGTTTTTTTTTTCTTTTTCAATTACATTTTTGTTATTTTCTTTTATGTTTTGAATTTATACTCTAGCATTTTATCTCAAATTCATCAGTTTTTGAAATGCGAAAACTAAGGTTGTTAGTGTTTTCTATTTTTGGATTAGTTCTTGAAATGTCAGTCTCAAATTTTCTTTTACTGATTTAATGGTATTTGTGGTGCAGATGCAAATCTACGTAGAAGACCTGACTGGAAAGACGATTCCCCTGAGGGTTGAGAGTTCAGACACAACAGTCGATGTGAAGAAGAAGATTCTTGACAAGGAAGGGATCCCAATGCACGAGCAACGTCTGATCATTGACGGTAAGCTACTAGAGGACAACCGTACCCTTGCCAGTTACAATATCCAAGAGAAGTCAACCATCAGCCTGGTCCTCCGCCTCCATGGGAGCTAG

Protein sequence

>MS.gene010031.t1

MEPLMISNPNLLDCCKCFQPLTIPVFQCDNGHIVCSTCCTKLRNKCHECSLRISSKRCKAIENLLLSIEMSCPNAKHGCKEKISYTGNRKHEGECIYLPCYCPLSGCDFAASSEVLSNHFSHKHGDSQIKFSYGHSFIVSLKSNDETIVLQEETEGKLFILNNRSTLLGNGVNICCIGPNSSESEYSYDILARSRICKLTLQSFAKNVQQVALATPSSELLVIPFGSSEPLQLDICITPMMQIYVEDLTGKTIPLRVESSDTTVDVKKKILDKEGIPMHEQRLIIDGKLLEDNRTLASYNIQEKSTISLVLRLHGS