AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009566


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009566.t1 MTR_5g076660 63.988 336 106 3 7 328 1 335 2.77e-144 411
MS.gene009566.t1 MTR_5g067400 62.581 310 115 1 19 328 2 310 4.55e-136 389
MS.gene009566.t1 MTR_1g046640 62.136 309 115 2 19 327 2 308 9.63e-133 381
MS.gene009566.t1 MTR_1g046650 61.489 309 117 2 19 327 2 308 2.92e-130 375
MS.gene009566.t1 MTR_1g046650 61.489 309 117 2 19 327 33 339 7.58e-130 375
MS.gene009566.t1 MTR_7g024290 61.415 311 118 2 19 328 2 311 8.63e-130 374
MS.gene009566.t1 MTR_2g038430 57.407 324 124 3 15 325 12 334 1.79e-122 356
MS.gene009566.t1 MTR_2g038420 59.561 319 123 3 15 328 12 329 1.30e-121 353
MS.gene009566.t1 MTR_5g076370 56.061 330 140 3 3 328 8 336 5.17e-119 347
MS.gene009566.t1 MTR_7g094390 56.037 323 137 2 12 330 156 477 6.99e-119 352
MS.gene009566.t1 MTR_1g046650 61.404 285 108 2 43 327 26 308 2.42e-116 339
MS.gene009566.t1 MTR_5g061290 54.829 321 134 6 15 328 5 321 9.82e-113 330
MS.gene009566.t1 MTR_5g076520 54.952 313 136 3 19 327 2 313 9.59e-110 323
MS.gene009566.t1 MTR_5g076810 60.821 268 103 2 66 332 2 268 9.90e-108 316
MS.gene009566.t1 MTR_5g076720 50.152 329 160 2 3 328 57 384 1.43e-104 312
MS.gene009566.t1 MTR_5g076820 58.456 272 104 6 21 287 13 280 1.41e-95 286
MS.gene009566.t1 MTR_1g046650 60.996 241 92 2 87 327 1 239 4.21e-95 283
MS.gene009566.t1 MTR_5g076505 51.724 290 136 2 42 328 21 309 4.47e-95 285
MS.gene009566.t1 MTR_5g076540 59.227 233 94 1 19 251 2 233 1.39e-86 261
MS.gene009566.t1 MTR_4g094468 44.351 239 127 3 20 255 89 324 3.27e-60 196
MS.gene009566.t1 MTR_5g077020 54.774 199 76 5 68 257 15 208 1.35e-58 189
MS.gene009566.t1 MTR_4g058025 62.810 121 43 2 98 217 14 133 1.12e-41 144
MS.gene009566.t1 MTR_7g085590 31.122 196 123 4 15 210 50 233 6.10e-25 102
MS.gene009566.t1 MTR_7g105080 58.571 70 29 0 259 328 1 70 1.20e-17 78.6
MS.gene009566.t1 MTR_3g092130 58.571 70 29 0 259 328 1 70 1.20e-17 78.6
MS.gene009566.t1 MTR_1g059690 58.571 70 29 0 259 328 1 70 1.20e-17 78.6
MS.gene009566.t1 MTR_5g092700 58.571 70 29 0 259 328 1 70 2.33e-17 78.6
MS.gene009566.t1 MTR_4g073580 58.571 70 29 0 259 328 1 70 2.33e-17 78.6
MS.gene009566.t1 MTR_8g088060 58.571 70 29 0 259 328 1 70 3.68e-17 77.8
MS.gene009566.t1 MTR_5g033960 58.571 70 29 0 259 328 1 70 4.55e-17 77.8
MS.gene009566.t1 MTR_4g073580 58.571 70 29 0 259 328 1 70 4.72e-17 78.6
MS.gene009566.t1 MTR_3g092130 58.571 70 29 0 259 328 1 70 5.98e-17 77.0
MS.gene009566.t1 MTR_7g116360 59.155 71 29 0 258 328 48 118 8.85e-17 79.7
MS.gene009566.t1 MTR_7g116360 53.750 80 37 0 249 328 115 194 3.04e-16 78.2
MS.gene009566.t1 MTR_7g116360 53.750 80 37 0 249 328 191 270 3.04e-16 78.2
MS.gene009566.t1 MTR_4g088495 60.000 70 28 0 259 328 1 70 1.26e-16 81.6
MS.gene009566.t1 MTR_4g088495 58.571 70 29 0 259 328 77 146 1.54e-15 78.2
MS.gene009566.t1 MTR_4g088495 58.571 70 29 0 259 328 153 222 1.54e-15 78.2
MS.gene009566.t1 MTR_4g088495 58.571 70 29 0 259 328 229 298 1.54e-15 78.2
MS.gene009566.t1 MTR_4g088495 58.571 70 29 0 259 328 305 374 1.54e-15 78.2
MS.gene009566.t1 MTR_4g088495 58.571 70 29 0 259 328 381 450 1.54e-15 78.2
MS.gene009566.t1 MTR_4g088495 58.571 70 29 0 259 328 457 526 1.54e-15 78.2
MS.gene009566.t1 MTR_4g088495 58.571 70 29 0 259 328 533 602 1.54e-15 78.2
MS.gene009566.t1 MTR_4g088495 58.571 70 29 0 259 328 609 678 1.54e-15 78.2
MS.gene009566.t1 MTR_4g088495 58.571 70 29 0 259 328 685 754 1.54e-15 78.2
MS.gene009566.t1 MTR_4g088495 58.571 70 29 0 259 328 761 830 1.54e-15 78.2
MS.gene009566.t1 MTR_4g088485 53.750 80 37 0 249 328 128 207 1.33e-16 77.8
MS.gene009566.t1 MTR_4g088485 58.571 70 29 0 259 328 1 70 1.37e-16 77.8
MS.gene009566.t1 MTR_7g116360 58.571 70 29 0 259 328 1 70 1.59e-16 78.2
MS.gene009566.t1 MTR_7g116360 58.571 70 29 0 259 328 77 146 1.59e-16 78.2
MS.gene009566.t1 MTR_7g116360 58.571 70 29 0 259 328 153 222 1.59e-16 78.2
MS.gene009566.t1 MTR_1g066390 58.571 70 29 0 259 328 1 70 1.77e-16 77.8
MS.gene009566.t1 MTR_1g066390 58.571 70 29 0 259 328 77 146 1.77e-16 77.8
MS.gene009566.t1 MTR_1g066390 58.571 70 29 0 259 328 153 222 1.77e-16 77.8
MS.gene009566.t1 MTR_4g080920 53.750 80 37 0 249 328 67 146 1.78e-16 77.8
MS.gene009566.t1 MTR_4g080920 57.143 70 30 0 259 328 1 70 1.81e-15 75.1
MS.gene009566.t1 MTR_4g080920 46.250 80 43 0 249 328 143 222 2.35e-11 63.2
MS.gene009566.t1 MTR_8g018230 53.750 80 37 0 249 328 67 146 3.14e-16 77.8
MS.gene009566.t1 MTR_8g018230 53.750 80 37 0 249 328 143 222 3.14e-16 77.8
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 1 70 3.26e-16 77.8
MS.gene009566.t1 MTR_6g061930 53.750 80 37 0 249 328 67 146 3.94e-16 78.2
MS.gene009566.t1 MTR_6g061930 53.750 80 37 0 249 328 204 283 3.94e-16 78.2
MS.gene009566.t1 MTR_6g061930 58.571 70 29 0 259 328 1 70 4.05e-16 77.8
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 1 70 4.62e-16 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 77 146 4.62e-16 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 153 222 4.62e-16 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 229 298 4.62e-16 78.2
MS.gene009566.t1 MTR_4g091580 58.571 70 29 0 259 328 305 374 5.74e-16 79.3
MS.gene009566.t1 MTR_4g091580 58.571 70 29 0 259 328 1 70 1.35e-15 78.2
MS.gene009566.t1 MTR_4g091580 58.571 70 29 0 259 328 77 146 1.35e-15 78.2
MS.gene009566.t1 MTR_4g091580 58.571 70 29 0 259 328 153 222 1.35e-15 78.2
MS.gene009566.t1 MTR_4g091580 58.571 70 29 0 259 328 229 298 1.35e-15 78.2
MS.gene009566.t1 MTR_4g091580 58.571 70 29 0 259 328 381 450 1.35e-15 78.2
MS.gene009566.t1 MTR_4g091580 58.571 70 29 0 259 328 457 526 1.35e-15 78.2
MS.gene009566.t1 MTR_4g091580 58.571 70 29 0 259 328 229 298 5.98e-16 78.6
MS.gene009566.t1 MTR_4g091580 58.571 70 29 0 259 328 1 70 8.30e-16 78.2
MS.gene009566.t1 MTR_4g091580 58.571 70 29 0 259 328 77 146 8.30e-16 78.2
MS.gene009566.t1 MTR_4g091580 58.571 70 29 0 259 328 153 222 8.30e-16 78.2
MS.gene009566.t1 MTR_4g091580 58.571 70 29 0 259 328 305 374 8.30e-16 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 1 70 6.30e-16 77.4
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 77 146 6.30e-16 77.4
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 153 222 6.30e-16 77.4
MS.gene009566.t1 MTR_8g081020 58.571 70 29 0 259 328 1 70 7.42e-16 78.2
MS.gene009566.t1 MTR_8g081020 58.571 70 29 0 259 328 77 146 7.42e-16 78.2
MS.gene009566.t1 MTR_8g081020 58.571 70 29 0 259 328 153 222 7.42e-16 78.2
MS.gene009566.t1 MTR_8g081020 58.571 70 29 0 259 328 229 298 7.42e-16 78.2
MS.gene009566.t1 MTR_8g081020 58.571 70 29 0 259 328 305 374 7.42e-16 78.2
MS.gene009566.t1 MTR_4g080797 58.571 70 29 0 259 328 1 70 8.46e-16 78.2
MS.gene009566.t1 MTR_4g080797 58.571 70 29 0 259 328 77 146 8.46e-16 78.2
MS.gene009566.t1 MTR_4g080797 58.571 70 29 0 259 328 153 222 8.46e-16 78.2
MS.gene009566.t1 MTR_4g080797 58.571 70 29 0 259 328 229 298 8.46e-16 78.2
MS.gene009566.t1 MTR_4g080797 58.571 70 29 0 259 328 305 374 8.46e-16 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 1 70 8.46e-16 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 77 146 8.46e-16 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 153 222 8.46e-16 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 229 298 8.46e-16 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 305 374 8.46e-16 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 1 70 8.54e-16 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 77 146 8.54e-16 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 153 222 8.54e-16 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 229 298 8.54e-16 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 305 374 8.54e-16 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 1 70 1.14e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 77 146 1.14e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 153 222 1.14e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 229 298 1.14e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 305 374 1.14e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 381 450 1.14e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 1 70 1.14e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 77 146 1.14e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 153 222 1.14e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 229 298 1.14e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 305 374 1.14e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 381 450 1.14e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 1 70 1.32e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 77 146 1.32e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 153 222 1.32e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 229 298 1.32e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 305 374 1.32e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 381 450 1.32e-15 78.2
MS.gene009566.t1 MTR_8g018230 58.571 70 29 0 259 328 457 526 1.32e-15 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 1 70 1.33e-15 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 77 146 1.33e-15 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 153 222 1.33e-15 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 229 298 1.33e-15 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 305 374 1.33e-15 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 381 450 1.33e-15 78.2
MS.gene009566.t1 MTR_4g081010 58.571 70 29 0 259 328 457 526 1.33e-15 78.2
MS.gene009566.t1 MTR_5g061310 50.000 70 35 0 259 328 2 71 3.03e-15 70.5
MS.gene009566.t1 MTR_8g027520 29.139 151 104 2 29 179 45 192 6.60e-15 74.7
MS.gene009566.t1 MTR_8g027520 29.139 151 104 2 29 179 54 201 7.51e-15 74.7
MS.gene009566.t1 MTR_3g091510 31.746 126 85 1 29 154 61 185 6.72e-14 72.0
MS.gene009566.t1 MTR_1g008120 30.952 126 86 1 29 154 69 193 5.87e-13 69.3
MS.gene009566.t1 MTR_8g479250 55.000 80 36 0 249 328 131 210 1.45e-12 67.8
MS.gene009566.t1 MTR_7g117415 30.159 126 87 1 29 154 62 186 1.97e-12 67.4
MS.gene009566.t1 MTR_8g038370 29.134 127 87 2 29 154 113 237 1.17e-11 65.5
MS.gene009566.t1 MTR_4g009980 46.269 67 32 1 268 330 5 71 1.39e-11 60.1
MS.gene009566.t1 MTR_3g017590 29.310 116 80 1 29 142 54 169 1.74e-11 64.7
MS.gene009566.t1 MTR_5g076740 47.761 67 34 1 258 323 85 151 1.96e-11 62.0
MS.gene009566.t1 MTR_1g054335 31.034 116 78 1 29 142 59 174 2.16e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009566.t1 AT5G37930 34.677 248 158 2 21 265 103 349 8.97e-44 154
MS.gene009566.t1 AT5G37890 33.778 225 146 2 20 241 40 264 2.20e-38 138
MS.gene009566.t1 AT1G66620 34.615 234 145 5 29 255 42 274 3.36e-38 138
MS.gene009566.t1 AT5G37870 30.556 252 169 4 16 261 30 281 4.69e-36 132
MS.gene009566.t1 AT5G37910 32.099 243 158 4 20 255 27 269 1.26e-32 123
MS.gene009566.t1 AT1G66630 29.278 263 163 5 16 255 34 296 1.18e-29 115
MS.gene009566.t1 AT1G66650 32.411 253 159 7 17 258 72 323 8.14e-28 111
MS.gene009566.t1 AT5G62800 29.259 270 181 7 15 275 27 295 1.22e-27 111
MS.gene009566.t1 AT5G62800 32.663 199 129 3 15 208 27 225 3.19e-27 109
MS.gene009566.t1 AT1G66660 25.200 250 178 5 16 256 91 340 8.53e-22 95.1
MS.gene009566.t1 AT5G37900 29.756 205 129 4 63 256 35 235 2.65e-18 83.2
MS.gene009566.t1 AT1G65350 60.000 70 28 0 259 328 152 221 7.51e-18 83.6
MS.gene009566.t1 AT1G65350 58.571 70 29 0 259 328 1 70 7.09e-16 77.8
MS.gene009566.t1 AT1G65350 57.143 70 29 1 259 328 77 145 2.82e-13 70.1
MS.gene009566.t1 AT3G52590 58.571 70 29 0 259 328 1 70 1.61e-17 78.2
MS.gene009566.t1 AT2G36170 58.571 70 29 0 259 328 1 70 1.61e-17 78.2
MS.gene009566.t1 AT2G47110 58.571 70 29 0 259 328 1 70 3.18e-17 78.2
MS.gene009566.t1 AT2G47110 58.571 70 29 0 259 328 1 70 3.18e-17 78.2
MS.gene009566.t1 AT3G62250 58.571 70 29 0 259 328 1 70 3.51e-17 78.2
MS.gene009566.t1 AT1G23410 58.571 70 29 0 259 328 1 70 3.61e-17 78.2
MS.gene009566.t1 AT2G35635 58.571 70 29 0 259 328 1 70 3.88e-17 77.8
MS.gene009566.t1 AT1G31340 58.571 70 29 0 259 328 1 70 4.15e-17 77.8
MS.gene009566.t1 AT4G05050 53.750 80 37 0 249 328 67 146 4.28e-17 77.8
MS.gene009566.t1 AT4G05050 58.571 70 29 0 259 328 1 70 4.41e-17 77.8
MS.gene009566.t1 AT4G05320 53.750 80 37 0 249 328 67 146 4.28e-17 77.8
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 1 70 4.41e-17 77.8
MS.gene009566.t1 AT5G37640 54.321 81 37 0 248 328 68 148 1.08e-16 80.1
MS.gene009566.t1 AT5G37640 52.500 80 38 0 249 328 145 224 3.66e-14 72.8
MS.gene009566.t1 AT5G37640 53.086 81 35 2 249 328 223 301 2.33e-13 70.5
MS.gene009566.t1 AT4G05050 58.571 70 29 0 259 328 1 70 1.67e-16 78.2
MS.gene009566.t1 AT4G05050 58.571 70 29 0 259 328 77 146 1.67e-16 78.2
MS.gene009566.t1 AT4G05050 58.571 70 29 0 259 328 153 222 1.67e-16 78.2
MS.gene009566.t1 AT4G05050 58.571 70 29 0 259 328 1 70 1.67e-16 78.2
MS.gene009566.t1 AT4G05050 58.571 70 29 0 259 328 77 146 1.67e-16 78.2
MS.gene009566.t1 AT4G05050 58.571 70 29 0 259 328 153 222 1.67e-16 78.2
MS.gene009566.t1 AT4G05050 58.571 70 29 0 259 328 1 70 1.67e-16 78.2
MS.gene009566.t1 AT4G05050 58.571 70 29 0 259 328 77 146 1.67e-16 78.2
MS.gene009566.t1 AT4G05050 58.571 70 29 0 259 328 153 222 1.67e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 1 70 1.67e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 77 146 1.67e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 153 222 1.67e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 1 70 1.67e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 77 146 1.67e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 153 222 1.67e-16 78.2
MS.gene009566.t1 AT3G09790 53.750 80 37 0 249 328 69 148 3.07e-16 80.1
MS.gene009566.t1 AT3G09790 57.143 70 30 0 259 328 552 621 1.55e-14 75.1
MS.gene009566.t1 AT3G09790 51.429 70 34 0 259 328 3 72 1.67e-12 68.9
MS.gene009566.t1 AT3G09790 53.750 80 37 0 249 328 69 148 3.07e-16 80.1
MS.gene009566.t1 AT3G09790 57.143 70 30 0 259 328 552 621 1.55e-14 75.1
MS.gene009566.t1 AT3G09790 51.429 70 34 0 259 328 3 72 1.67e-12 68.9
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 1 70 4.79e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 77 146 4.79e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 153 222 4.79e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 229 298 4.79e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 1 70 4.79e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 77 146 4.79e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 153 222 4.79e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 229 298 4.79e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 1 70 4.79e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 77 146 4.79e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 153 222 4.79e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 229 298 4.79e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 1 70 4.79e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 77 146 4.79e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 153 222 4.79e-16 78.2
MS.gene009566.t1 AT4G02890 58.571 70 29 0 259 328 229 298 4.79e-16 78.2
MS.gene009566.t1 AT5G03240 58.571 70 29 0 259 328 1 70 4.85e-16 78.2
MS.gene009566.t1 AT5G03240 58.571 70 29 0 259 328 77 146 4.85e-16 78.2
MS.gene009566.t1 AT5G03240 58.571 70 29 0 259 328 153 222 4.85e-16 78.2
MS.gene009566.t1 AT5G03240 58.571 70 29 0 259 328 229 298 4.85e-16 78.2
MS.gene009566.t1 AT5G03240 58.571 70 29 0 259 328 1 70 4.85e-16 78.2
MS.gene009566.t1 AT5G03240 58.571 70 29 0 259 328 77 146 4.85e-16 78.2
MS.gene009566.t1 AT5G03240 58.571 70 29 0 259 328 153 222 4.85e-16 78.2
MS.gene009566.t1 AT5G03240 58.571 70 29 0 259 328 229 298 4.85e-16 78.2
MS.gene009566.t1 AT5G03240 58.571 70 29 0 259 328 1 70 4.85e-16 78.2
MS.gene009566.t1 AT5G03240 58.571 70 29 0 259 328 77 146 4.85e-16 78.2
MS.gene009566.t1 AT5G03240 58.571 70 29 0 259 328 153 222 4.85e-16 78.2
MS.gene009566.t1 AT5G03240 58.571 70 29 0 259 328 229 298 4.85e-16 78.2
MS.gene009566.t1 AT5G20620 58.571 70 29 0 259 328 1 70 4.85e-16 78.2
MS.gene009566.t1 AT5G20620 58.571 70 29 0 259 328 77 146 4.85e-16 78.2
MS.gene009566.t1 AT5G20620 58.571 70 29 0 259 328 153 222 4.85e-16 78.2
MS.gene009566.t1 AT5G20620 58.571 70 29 0 259 328 229 298 4.85e-16 78.2
MS.gene009566.t1 AT1G55060 57.143 70 30 0 259 328 77 146 5.63e-16 76.6
MS.gene009566.t1 AT1G55060 52.500 80 38 0 249 328 143 222 1.99e-15 75.1
MS.gene009566.t1 AT1G55060 52.857 70 33 0 259 328 1 70 4.86e-14 71.2
MS.gene009566.t1 AT5G20620 58.571 70 29 0 259 328 1 70 8.42e-16 78.2
MS.gene009566.t1 AT5G20620 58.571 70 29 0 259 328 77 146 8.42e-16 78.2
MS.gene009566.t1 AT5G20620 58.571 70 29 0 259 328 153 222 8.42e-16 78.2
MS.gene009566.t1 AT5G20620 58.571 70 29 0 259 328 229 298 8.42e-16 78.2
MS.gene009566.t1 AT5G20620 58.571 70 29 0 259 328 305 374 8.42e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 1 70 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 77 146 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 153 222 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 229 298 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 305 374 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 1 70 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 77 146 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 153 222 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 229 298 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 305 374 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 1 70 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 77 146 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 153 222 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 229 298 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 305 374 8.86e-16 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 1 70 1.20e-15 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 77 146 1.20e-15 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 153 222 1.20e-15 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 229 298 1.20e-15 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 305 374 1.20e-15 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 381 450 1.20e-15 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 1 70 1.20e-15 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 77 146 1.20e-15 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 153 222 1.20e-15 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 229 298 1.20e-15 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 305 374 1.20e-15 78.2
MS.gene009566.t1 AT4G05320 58.571 70 29 0 259 328 381 450 1.20e-15 78.2
MS.gene009566.t1 AT1G66610 28.477 151 106 2 93 241 183 333 1.31e-14 74.3
MS.gene009566.t1 AT1G66610 42.623 61 35 0 29 89 54 114 5.03e-11 63.5
MS.gene009566.t1 AT1G53930 50.000 70 35 0 259 328 86 155 2.75e-14 70.1
MS.gene009566.t1 AT3G61790 30.159 126 87 1 29 154 61 185 2.58e-13 70.1
MS.gene009566.t1 AT4G27880 30.822 146 96 2 11 154 44 186 5.70e-13 69.3
MS.gene009566.t1 AT1G66610 42.623 61 35 0 29 89 54 114 6.71e-11 62.0

Find 73 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCTACTATTATGATATTT+TGG 0.157177 5.3:+62064300 MS.gene009566:CDS
AGCAAAGTCACAACCTAAAA+TGG 0.183798 5.3:-62064053 None:intergenic
CCTTGTGCAAATGGCTAAAA+TGG 0.220076 5.3:-62064099 None:intergenic
AGGGGCTACCATATGAAAAT+TGG 0.296646 5.3:-62064132 None:intergenic
TGTATGATTTATCTAGCTAT+AGG 0.332023 5.3:-62064914 None:intergenic
ACTGTTCTCTTGAAGAATAA+TGG 0.356172 5.3:-62064185 None:intergenic
CACCAGCATTATCTGTTCCT+TGG 0.374771 5.3:+62064787 MS.gene009566:CDS
AAGGGATAATCTTTCCAGTC+AGG 0.403562 5.3:-62064693 None:intergenic
GTATGATTTATCTAGCTATA+GGG 0.406518 5.3:-62064913 None:intergenic
GCCTGCATTACACGGTGATT+TGG 0.410167 5.3:-62062468 None:intergenic
GGTAAAGGATGGACTTATCT+TGG 0.415625 5.3:-62064855 None:intergenic
CTTGACTATCCCTGTGTTCG+AGG 0.422546 5.3:+62062575 MS.gene009566:CDS
GCAAAGTCACAACCTAAAAT+GGG 0.423707 5.3:-62064052 None:intergenic
AATTTCTAACTTGAGTAGTT+CGG 0.430490 5.3:-62064431 None:intergenic
GGCTTCATCAATAAACTTCA+AGG 0.433969 5.3:-62064164 None:intergenic
AATGGCTCTGGATCGTTTCA+AGG 0.434530 5.3:-62063906 None:intergenic
TTCGAGAATCCTTGTGCAAA+TGG 0.437698 5.3:-62064108 None:intergenic
CATCTAGTTGCTTATTTCCA+AGG 0.440781 5.3:-62064804 None:intergenic
CAATAGATTCTCAATGGCTC+TGG 0.452098 5.3:-62063918 None:intergenic
TTCTTCAAGAGAACAGTGTT+GGG 0.454309 5.3:+62064191 MS.gene009566:CDS
TGGAAAGATTATCCCTTTGA+AGG 0.467459 5.3:+62064699 MS.gene009566:CDS
GCAGTCAATATTAGCTGCAT+TGG 0.470841 5.3:+62064256 MS.gene009566:CDS
AAAACTGTGGAACTTTGCAC+TGG 0.471427 5.3:-62064338 None:intergenic
AACTTCAAGGTGACAAAGAA+GGG 0.477193 5.3:-62064151 None:intergenic
GAGGGTCGCCGACGAGGTAA+AGG 0.477240 5.3:-62064870 None:intergenic
ATCTTTGTACAAACCCTGAC+TGG 0.477369 5.3:+62064679 MS.gene009566:CDS
GTTCCCATGTTTAGAACAGC+AGG 0.480246 5.3:-62063855 None:intergenic
ATTCTTCAAGAGAACAGTGT+TGG 0.492231 5.3:+62064190 MS.gene009566:CDS
TCTGAACTCTCCACCTTCAA+AGG 0.496142 5.3:-62064712 None:intergenic
GAATAACTTATAGTGGAAAG+AGG 0.502573 5.3:+62063990 MS.gene009566:CDS
GTTGCAATTCAGTGTGATAA+TGG 0.502832 5.3:+62063815 MS.gene009566:intron
GCCAAATCACCGTGTAATGC+AGG 0.504554 5.3:+62062467 MS.gene009566:intron
GACATGCATACCTCGAACAC+AGG 0.508448 5.3:-62062585 None:intergenic
GTAGCGTGGTTCAGAAGAGT+TGG 0.511055 5.3:-62064284 None:intergenic
AAGGAGAGAATAACTTATAG+TGG 0.516242 5.3:+62063983 MS.gene009566:CDS
CCTAAAATGGGGTAGTAACA+TGG 0.523694 5.3:-62064040 None:intergenic
AAACTTCAAGGTGACAAAGA+AGG 0.527821 5.3:-62064152 None:intergenic
AGGGATAATCTTTCCAGTCA+GGG 0.534012 5.3:-62064692 None:intergenic
TTGGATGTCGTAATCATCAA+TGG 0.545303 5.3:-62064836 None:intergenic
CTGAACTCTCCACCTTCAAA+GGG 0.545740 5.3:-62064711 None:intergenic
TTCCAAGGAACAGATAATGC+TGG 0.548367 5.3:-62064789 None:intergenic
TAGCGTGGTTCAGAAGAGTT+GGG 0.548704 5.3:-62064283 None:intergenic
TCTACCTGCTGTTCTAAACA+TGG 0.558526 5.3:+62063851 MS.gene009566:CDS
AGAAGTCTCTTCACAGTCGT+TGG 0.562361 5.3:-62062496 None:intergenic
CATGATGAGGGTCGCCGACG+AGG 0.562993 5.3:-62064876 None:intergenic
AAATAATAGAACTGAGAGTG+TGG 0.568562 5.3:+62064228 MS.gene009566:CDS
GAGTGGTTGTCTTCATGATG+AGG 0.569206 5.3:-62064889 None:intergenic
GAAGGTGGAGAGTTCAGATA+CGG 0.573368 5.3:+62064717 MS.gene009566:CDS
TTATCTAGCTATAGGGTGAG+TGG 0.581253 5.3:-62064906 None:intergenic
AGATTGCAATAGATTCTCAA+TGG 0.582302 5.3:-62063924 None:intergenic
GAATGTAAAACACGGTTGCA+AGG 0.585808 5.3:+62063964 MS.gene009566:CDS
AAAGATTATCCCTTTGAAGG+TGG 0.598975 5.3:+62064702 MS.gene009566:CDS
AATAATAGAACTGAGAGTGT+GGG 0.601725 5.3:+62064229 MS.gene009566:CDS
GAGTTTCTAAAGAAACTCGT+TGG 0.603280 5.3:-62064372 None:intergenic
GTCGCCGACGAGGTAAAGGA+TGG 0.603797 5.3:-62064866 None:intergenic
GCAATCAAACGCATGAGGGT+CGG 0.603929 5.3:-62062535 None:intergenic
TGCAGCAATCAAACGCATGA+GGG 0.606914 5.3:-62062539 None:intergenic
ATGCAGCAATCAAACGCATG+AGG 0.610999 5.3:-62062540 None:intergenic
TGGTATGTGCCTGCATTACA+CGG 0.621391 5.3:-62062476 None:intergenic
AAGTCCATCCTTTACCTCGT+CGG 0.626464 5.3:+62064862 MS.gene009566:CDS
CTACCTGCTGTTCTAAACAT+GGG 0.638267 5.3:+62063852 MS.gene009566:CDS
AGTGGTTGTCTTCATGATGA+GGG 0.639161 5.3:-62064888 None:intergenic
ACTTCAAGGTGACAAAGAAG+GGG 0.652282 5.3:-62064150 None:intergenic
TGTCGTAATCATCAATGGTG+AGG 0.657734 5.3:-62064831 None:intergenic
ACATGCATACCTCGAACACA+GGG 0.660447 5.3:-62062584 None:intergenic
AAAATATCATAATAGTAGCG+TGG 0.660800 5.3:-62064298 None:intergenic
CGTAATCATCAATGGTGAGG+CGG 0.661754 5.3:-62064828 None:intergenic
CAAAGTCACAACCTAAAATG+GGG 0.675928 5.3:-62064051 None:intergenic
CTCGAACACAGGGATAGTCA+AGG 0.675930 5.3:-62062574 None:intergenic
GGTGGAGAGTTCAGATACGG+TGG 0.683257 5.3:+62064720 MS.gene009566:CDS
TCATGTCTGAATGTAAAACA+CGG 0.708463 5.3:+62063956 MS.gene009566:CDS
CGTGGTTCAGAAGAGTTGGG+AGG 0.713627 5.3:-62064280 None:intergenic
AAAGGAGATACATACCTTGG+GGG 0.725796 5.3:-62064461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATATAATAAAATA+TGG - chr5.3:62061850-62061869 None:intergenic 0.0%
!! AAAAAAAATTAAAATTGAGT+TGG + chr5.3:62063687-62063706 MS.gene009566:intron 10.0%
!!! AATTAATATTTTTGTTATGA+GGG - chr5.3:62063637-62063656 None:intergenic 10.0%
!!! ATTTCAATTTTTTTTTTTAC+AGG + chr5.3:62062205-62062224 MS.gene009566:intron 10.0%
!!! TAATTAATATTTTTGTTATG+AGG - chr5.3:62063638-62063657 None:intergenic 10.0%
!!! TTAATTTTTTTTCCTTAAAT+GGG - chr5.3:62063679-62063698 None:intergenic 10.0%
!!! TTTAATTTTTTTTCCTTAAA+TGG - chr5.3:62063680-62063699 None:intergenic 10.0%
!!! TTTCAATTTTTTTTTTTACA+GGG + chr5.3:62062206-62062225 MS.gene009566:intron 10.0%
!! AAAAACCAAATTGAATTAAA+AGG - chr5.3:62064411-62064430 None:intergenic 15.0%
!! ACTTTATCATTATATAATCA+AGG - chr5.3:62062281-62062300 None:intergenic 15.0%
!! ATATAATGATAAAGTTGTAA+TGG + chr5.3:62062286-62062305 MS.gene009566:intron 15.0%
!! ATTTATAAAGAAAACTTCAA+CGG - chr5.3:62063275-62063294 None:intergenic 15.0%
!! GTAAAAACAATTAAAAATTC+TGG - chr5.3:62061919-62061938 None:intergenic 15.0%
!! TATGTGTTGAAATATTATTT+AGG - chr5.3:62063019-62063038 None:intergenic 15.0%
!! TTATTGAATATATGTGAAAA+TGG + chr5.3:62062921-62062940 MS.gene009566:intron 15.0%
!!! AAAAAACAAAAAATTTTGCA+GGG + chr5.3:62062178-62062197 MS.gene009566:intron 15.0%
!!! GAAGTTTTCTTTATAAATTA+AGG + chr5.3:62063277-62063296 MS.gene009566:intron 15.0%
!!! TAAAAAACAAAAAATTTTGC+AGG + chr5.3:62062177-62062196 MS.gene009566:intron 15.0%
!!! TTATTATTGATTAGTTTTGT+TGG + chr5.3:62064636-62064655 MS.gene009566:intron 15.0%
!! AAATTAAAACAATTACCACA+TGG + chr5.3:62062065-62062084 MS.gene009566:intron 20.0%
!! CAACTTTATCATTATATAGT+TGG - chr5.3:62062391-62062410 None:intergenic 20.0%
!! CAATAATTCAACTACTAAAT+AGG - chr5.3:62063416-62063435 None:intergenic 20.0%
!! CTATTTAGTAGTTGAATTAT+TGG + chr5.3:62063414-62063433 MS.gene009566:intron 20.0%
!! TAAAAAACCAAATCATTTGA+CGG - chr5.3:62063303-62063322 None:intergenic 20.0%
!!! AAAGTGTTTTTTTACAACAA+AGG - chr5.3:62062967-62062986 None:intergenic 20.0%
!!! TAATTTGTTGTCATATTTTG+TGG + chr5.3:62062624-62062643 MS.gene009566:intron 20.0%
! AAAATATCATAATAGTAGCG+TGG - chr5.3:62064301-62064320 None:intergenic 25.0%
! AATTTCTAACTTGAGTAGTT+CGG - chr5.3:62064434-62064453 None:intergenic 25.0%
! CCAGAAAAAAAAACTAAAAC+AGG - chr5.3:62064607-62064626 None:intergenic 25.0%
! GAAAATCATCAAGTTAGATT+TGG - chr5.3:62063789-62063808 None:intergenic 25.0%
! TGATAGAGTTAAAATTCGAA+AGG - chr5.3:62064536-62064555 None:intergenic 25.0%
! TTATTTAGTAGCAAACTTGT+TGG + chr5.3:62063364-62063383 MS.gene009566:intron 25.0%
!! ACGCTACTATTATGATATTT+TGG + chr5.3:62064300-62064319 MS.gene009566:CDS 25.0%
!! AGATGTCAAAAATGTTTTAC+AGG + chr5.3:62063878-62063897 MS.gene009566:CDS 25.0%
!! TTTTTCCCTCAAAATATGAA+AGG - chr5.3:62062667-62062686 None:intergenic 25.0%
!!! ACTATTATGATATTTTGGCT+AGG + chr5.3:62064305-62064324 MS.gene009566:CDS 25.0%
!!! ATACTCCTTTCATATTTTGA+GGG + chr5.3:62062659-62062678 MS.gene009566:intron 25.0%
!!! ATTAGTTTTGTTGGTAATTG+TGG + chr5.3:62064645-62064664 MS.gene009566:intron 25.0%
!!! ATTTTTTTTCCTTAAATGGG+AGG - chr5.3:62063676-62063695 None:intergenic 25.0%
!!! CCTGTTTTAGTTTTTTTTTC+TGG + chr5.3:62064604-62064623 MS.gene009566:intron 25.0%
!!! GAGTTCCTTTTAATTCAATT+TGG + chr5.3:62064403-62064422 MS.gene009566:CDS 25.0%
!!! TACCAAACCTTTAAAATTGT+CGG + chr5.3:62063475-62063494 MS.gene009566:intron 25.0%
!!! TGAATACTTATTTTACACGA+GGG - chr5.3:62063450-62063469 None:intergenic 25.0%
!!! TTGTTTTTTAAAAAGGTCCT+TGG - chr5.3:62062167-62062186 None:intergenic 25.0%
AAATAATAGAACTGAGAGTG+TGG + chr5.3:62064228-62064247 MS.gene009566:CDS 30.0%
AACACATAGCAATGATATTG+TGG + chr5.3:62063031-62063050 MS.gene009566:intron 30.0%
AACATTAATCCTCCCATTTA+AGG + chr5.3:62063664-62063683 MS.gene009566:intron 30.0%
AAGGAGAGAATAACTTATAG+TGG + chr5.3:62063983-62064002 MS.gene009566:CDS 30.0%
ACTGTTCTCTTGAAGAATAA+TGG - chr5.3:62064188-62064207 None:intergenic 30.0%
AGATTGCAATAGATTCTCAA+TGG - chr5.3:62063927-62063946 None:intergenic 30.0%
ATAGCAATGATATTGTGGTT+TGG + chr5.3:62063036-62063055 MS.gene009566:intron 30.0%
CAAAAATTTGTGACAAGGAA+TGG + chr5.3:62064755-62064774 MS.gene009566:CDS 30.0%
GAAAGCAAAAATTTGTGACA+AGG + chr5.3:62064750-62064769 MS.gene009566:CDS 30.0%
TAGGGTTTAAGTGATAAGTA+CGG + chr5.3:62063077-62063096 MS.gene009566:intron 30.0%
TCATGTCTGAATGTAAAACA+CGG + chr5.3:62063956-62063975 MS.gene009566:CDS 30.0%
TTAATTGAGAAGAACAAGTG+AGG - chr5.3:62064493-62064512 None:intergenic 30.0%
! AATAATAGAACTGAGAGTGT+GGG + chr5.3:62064229-62064248 MS.gene009566:CDS 30.0%
! AATAGGCTTTTTGTAAGCAT+TGG - chr5.3:62063232-62063251 None:intergenic 30.0%
! ATAGGCTTTTTGTAAGCATT+GGG - chr5.3:62063231-62063250 None:intergenic 30.0%
! ATTTAAAGCCTAATCCAACT+CGG + chr5.3:62063143-62063162 MS.gene009566:intron 30.0%
! GAATAACTTATAGTGGAAAG+AGG + chr5.3:62063990-62064009 MS.gene009566:CDS 30.0%
! GATACTCCTTTCATATTTTG+AGG + chr5.3:62062658-62062677 MS.gene009566:intron 30.0%
! TCTCGAATCCAATTTTCATA+TGG + chr5.3:62064124-62064143 MS.gene009566:CDS 30.0%
! TGGTTATACATTTTACTGCA+TGG + chr5.3:62063707-62063726 MS.gene009566:intron 30.0%
!! AATATAGCCAATTTGGGTTT+TGG - chr5.3:62062233-62062252 None:intergenic 30.0%
!! AGTTGGATTAGGCTTTAAAT+AGG - chr5.3:62063143-62063162 None:intergenic 30.0%
!! ATTAGGCTTTAAATAGGTCA+TGG - chr5.3:62063137-62063156 None:intergenic 30.0%
!! TTCCGACAATTTTAAAGGTT+TGG - chr5.3:62063480-62063499 None:intergenic 30.0%
!!! CTGAATACTTATTTTACACG+AGG - chr5.3:62063451-62063470 None:intergenic 30.0%
!!! TGATTTGGTTTTTTAGTCGA+AGG + chr5.3:62063308-62063327 MS.gene009566:intron 30.0%
AAACTTCAAGGTGACAAAGA+AGG - chr5.3:62064155-62064174 None:intergenic 35.0%
AACTTCAAGGTGACAAAGAA+GGG - chr5.3:62064154-62064173 None:intergenic 35.0%
AGCAAAGTCACAACCTAAAA+TGG - chr5.3:62064056-62064075 None:intergenic 35.0%
AGTAAAGGAGATACATACCT+TGG - chr5.3:62064467-62064486 None:intergenic 35.0%
ATTAAGGCCGTCAAATGATT+TGG + chr5.3:62063293-62063312 MS.gene009566:intron 35.0%
ATTCTTCAAGAGAACAGTGT+TGG + chr5.3:62064190-62064209 MS.gene009566:CDS 35.0%
CAAAGGCAAAAAAATCACCA+AGG - chr5.3:62062812-62062831 None:intergenic 35.0%
CAAAGTCACAACCTAAAATG+GGG - chr5.3:62064054-62064073 None:intergenic 35.0%
CATCTAGTTGCTTATTTCCA+AGG - chr5.3:62064807-62064826 None:intergenic 35.0%
GAACAAGTGAGGTAAAGTAA+AGG - chr5.3:62064482-62064501 None:intergenic 35.0%
GCAAAGTCACAACCTAAAAT+GGG - chr5.3:62064055-62064074 None:intergenic 35.0%
GCTGCAAATATAGCCAATTT+GGG - chr5.3:62062239-62062258 None:intergenic 35.0%
GGCTTCATCAATAAACTTCA+AGG - chr5.3:62064167-62064186 None:intergenic 35.0%
GTAAAGGAGATACATACCTT+GGG - chr5.3:62064466-62064485 None:intergenic 35.0%
GTTGCAATTCAGTGTGATAA+TGG + chr5.3:62063815-62063834 MS.gene009566:intron 35.0%
GTTTAAGTGATAAGTACGGA+CGG + chr5.3:62063081-62063100 MS.gene009566:intron 35.0%
TAAAGGAGATACATACCTTG+GGG - chr5.3:62064465-62064484 None:intergenic 35.0%
TAGAATGAGTGCAGAACATA+GGG + chr5.3:62063059-62063078 MS.gene009566:intron 35.0%
TGGAAAGATTATCCCTTTGA+AGG + chr5.3:62064699-62064718 MS.gene009566:CDS 35.0%
TGTTAGATAACTCACAACCT+TGG + chr5.3:62062792-62062811 MS.gene009566:intron 35.0%
TTCTTCAAGAGAACAGTGTT+GGG + chr5.3:62064191-62064210 MS.gene009566:CDS 35.0%
TTGGATGTCGTAATCATCAA+TGG - chr5.3:62064839-62064858 None:intergenic 35.0%
TTGGCACATTTATGTCTATG+TGG - chr5.3:62062126-62062145 None:intergenic 35.0%
! AAAGATTATCCCTTTGAAGG+TGG + chr5.3:62064702-62064721 MS.gene009566:CDS 35.0%
! ACAAATTTTTGCTTTCACGC+TGG - chr5.3:62064746-62064765 None:intergenic 35.0%
! CTTTTACACCCCTATTGATA+CGG + chr5.3:62063605-62063624 MS.gene009566:intron 35.0%
! GAACTTTGCACTGGATTTTT+GGG - chr5.3:62064332-62064351 None:intergenic 35.0%
! GAGTTTCTAAAGAAACTCGT+TGG - chr5.3:62064375-62064394 None:intergenic 35.0%
! GCATATCCTTGTTATCAAAC+AGG - chr5.3:62063169-62063188 None:intergenic 35.0%
! GCATGTTCCGACAATTTTAA+AGG - chr5.3:62063485-62063504 None:intergenic 35.0%
!! CATGTTTAAGAGTATCGCAA+AGG - chr5.3:62062829-62062848 None:intergenic 35.0%
!! CTGTCATAGACTCGTTTTTA+AGG - chr5.3:62063507-62063526 None:intergenic 35.0%
!! GTTGAATTATTGGTGTTGCT+AGG + chr5.3:62063424-62063443 MS.gene009566:intron 35.0%
AAAACTGTGGAACTTTGCAC+TGG - chr5.3:62064341-62064360 None:intergenic 40.0%
AAAGGAGATACATACCTTGG+GGG - chr5.3:62064464-62064483 None:intergenic 40.0%
AAGGGATAATCTTTCCAGTC+AGG - chr5.3:62064696-62064715 None:intergenic 40.0%
ACGAGTCTATGACAGACAAT+AGG + chr5.3:62063512-62063531 MS.gene009566:intron 40.0%
ACTGTGTATCTTTGCACAGT+TGG - chr5.3:62062094-62062113 None:intergenic 40.0%
ACTTCAAGGTGACAAAGAAG+GGG - chr5.3:62064153-62064172 None:intergenic 40.0%
AGAAATTTGCATAACCCCCA+AGG + chr5.3:62064447-62064466 MS.gene009566:CDS 40.0%
AGAAGACCTAATCACACCAA+CGG - chr5.3:62063334-62063353 None:intergenic 40.0%
AGGGATAATCTTTCCAGTCA+GGG - chr5.3:62064695-62064714 None:intergenic 40.0%
AGGGGCTACCATATGAAAAT+TGG - chr5.3:62064135-62064154 None:intergenic 40.0%
AGTGGTTGTCTTCATGATGA+GGG - chr5.3:62064891-62064910 None:intergenic 40.0%
ATCTTTGTACAAACCCTGAC+TGG + chr5.3:62064679-62064698 MS.gene009566:CDS 40.0%
CAATAGATTCTCAATGGCTC+TGG - chr5.3:62063921-62063940 None:intergenic 40.0%
CCTAAAATGGGGTAGTAACA+TGG - chr5.3:62064043-62064062 None:intergenic 40.0%
CCTTGTGCAAATGGCTAAAA+TGG - chr5.3:62064102-62064121 None:intergenic 40.0%
CGCTGCAAATATAGCCAATT+TGG - chr5.3:62062240-62062259 None:intergenic 40.0%
GAATGTAAAACACGGTTGCA+AGG + chr5.3:62063964-62063983 MS.gene009566:CDS 40.0%
GCAGTCAATATTAGCTGCAT+TGG + chr5.3:62064256-62064275 MS.gene009566:CDS 40.0%
GGACATTCTTCGAAAAACTG+TGG - chr5.3:62064354-62064373 None:intergenic 40.0%
GTAGAATGAGTGCAGAACAT+AGG + chr5.3:62063058-62063077 MS.gene009566:intron 40.0%
TGGCCTACTACAAAGACTAT+AGG - chr5.3:62063550-62063569 None:intergenic 40.0%
TGGCCTATAGTCTTTGTAGT+AGG + chr5.3:62063544-62063563 MS.gene009566:intron 40.0%
TGGTGTGATTAGGTCTTCTT+AGG + chr5.3:62063335-62063354 MS.gene009566:intron 40.0%
TGTCGTAATCATCAATGGTG+AGG - chr5.3:62064834-62064853 None:intergenic 40.0%
TTCCAAGGAACAGATAATGC+TGG - chr5.3:62064792-62064811 None:intergenic 40.0%
TTCGAGAATCCTTGTGCAAA+TGG - chr5.3:62064111-62064130 None:intergenic 40.0%
! AATAGGGGTGTAAAAGGATC+AGG - chr5.3:62063601-62063620 None:intergenic 40.0%
! ATTTGTTCGATTCGATCCCA+TGG + chr5.3:62062717-62062736 MS.gene009566:intron 40.0%
! CCATGTTACTACCCCATTTT+AGG + chr5.3:62064040-62064059 MS.gene009566:CDS 40.0%
! CGTATCAATAGGGGTGTAAA+AGG - chr5.3:62063607-62063626 None:intergenic 40.0%
! CTACCTGCTGTTCTAAACAT+GGG + chr5.3:62063852-62063871 MS.gene009566:CDS 40.0%
! GACTTAGGCTTTATAAAGCC+TGG + chr5.3:62063570-62063589 MS.gene009566:intron 40.0%
! GGAACTTTGCACTGGATTTT+TGG - chr5.3:62064333-62064352 None:intergenic 40.0%
! GGCTTTATAAAGCCTAAGTC+TGG - chr5.3:62063570-62063589 None:intergenic 40.0%
! GGTAAAGGATGGACTTATCT+TGG - chr5.3:62064858-62064877 None:intergenic 40.0%
! TCTACCTGCTGTTCTAAACA+TGG + chr5.3:62063851-62063870 MS.gene009566:CDS 40.0%
! TTTGTTCGATTCGATCCCAT+GGG + chr5.3:62062718-62062737 MS.gene009566:intron 40.0%
!! CCATTTTAGCCATTTGCACA+AGG + chr5.3:62064099-62064118 MS.gene009566:CDS 40.0%
!! GTATGAGTATCGAGACACAT+AGG - chr5.3:62062757-62062776 None:intergenic 40.0%
AAGTCCATCCTTTACCTCGT+CGG + chr5.3:62064862-62064881 MS.gene009566:CDS 45.0%
ACAGGGACCAAAACCCAAAT+TGG + chr5.3:62062223-62062242 MS.gene009566:intron 45.0%
ACATGCATACCTCGAACACA+GGG - chr5.3:62062587-62062606 None:intergenic 45.0%
AGAAGTCTCTTCACAGTCGT+TGG - chr5.3:62062499-62062518 None:intergenic 45.0%
ATGCAGCAATCAAACGCATG+AGG - chr5.3:62062543-62062562 None:intergenic 45.0%
CACCAGCATTATCTGTTCCT+TGG + chr5.3:62064787-62064806 MS.gene009566:CDS 45.0%
CGTAATCATCAATGGTGAGG+CGG - chr5.3:62064831-62064850 None:intergenic 45.0%
CTGAACTCTCCACCTTCAAA+GGG - chr5.3:62064714-62064733 None:intergenic 45.0%
CTTTGTAGTAGGCCAGACTT+AGG + chr5.3:62063555-62063574 MS.gene009566:intron 45.0%
GAAGGTGGAGAGTTCAGATA+CGG + chr5.3:62064717-62064736 MS.gene009566:CDS 45.0%
GAGTGGTTGTCTTCATGATG+AGG - chr5.3:62064892-62064911 None:intergenic 45.0%
GTATCGAGACACATAGGCTA+AGG - chr5.3:62062751-62062770 None:intergenic 45.0%
TAGCGTGGTTCAGAAGAGTT+GGG - chr5.3:62064286-62064305 None:intergenic 45.0%
TCTGAACTCTCCACCTTCAA+AGG - chr5.3:62064715-62064734 None:intergenic 45.0%
TGCAGCAATCAAACGCATGA+GGG - chr5.3:62062542-62062561 None:intergenic 45.0%
TGCCAACTCAGCAGTAAAGT+GGG + chr5.3:62062140-62062159 MS.gene009566:intron 45.0%
TGGTATGTGCCTGCATTACA+CGG - chr5.3:62062371-62062390 None:intergenic 45.0%
TGTTATCAAACAGGCCGAGT+TGG - chr5.3:62063160-62063179 None:intergenic 45.0%
! ACTCGGCCTGTTTGATAACA+AGG + chr5.3:62063160-62063179 MS.gene009566:intron 45.0%
! AGGCTTTATAAAGCCTGGTC+CGG + chr5.3:62063575-62063594 MS.gene009566:intron 45.0%
! GTTCCCATGTTTAGAACAGC+AGG - chr5.3:62063858-62063877 None:intergenic 45.0%
!! AATGGCTCTGGATCGTTTCA+AGG - chr5.3:62063909-62063928 None:intergenic 45.0%
!!! GTTTTTTAGTCGAAGGCCGT+TGG + chr5.3:62063315-62063334 MS.gene009566:intron 45.0%
!!! AAATTTTTTGTTTTTTAAAA+AGG - chr5.3:62062174-62062193 None:intergenic 5.0%
!!! TATTTTTTGTTTTTAAAAAA+TGG + chr5.3:62062029-62062048 MS.gene009566:intron 5.0%
AACATGCTGACCTCTCGTAG+AGG + chr5.3:62063105-62063124 MS.gene009566:intron 50.0%
AGGGAGAGCTCCGTATCAAT+AGG - chr5.3:62063618-62063637 None:intergenic 50.0%
CAGACAATAGGCTAGACTCG+TGG + chr5.3:62063524-62063543 MS.gene009566:intron 50.0%
CTCGAACACAGGGATAGTCA+AGG - chr5.3:62062577-62062596 None:intergenic 50.0%
CTTGACTATCCCTGTGTTCG+AGG + chr5.3:62062575-62062594 MS.gene009566:CDS 50.0%
GAAAACTTCAACGGCCGAGT+TGG - chr5.3:62063266-62063285 None:intergenic 50.0%
GACATGCATACCTCGAACAC+AGG - chr5.3:62062588-62062607 None:intergenic 50.0%
GCAATCAAACGCATGAGGGT+CGG - chr5.3:62062538-62062557 None:intergenic 50.0%
GCCAAATCACCGTGTAATGC+AGG + chr5.3:62062359-62062378 MS.gene009566:intron 50.0%
GCCAACTCAGCAGTAAAGTG+GGG + chr5.3:62062141-62062160 MS.gene009566:intron 50.0%
GCCTGCATTACACGGTGATT+TGG - chr5.3:62062363-62062382 None:intergenic 50.0%
GGAGAGCTCCGTATCAATAG+GGG - chr5.3:62063616-62063635 None:intergenic 50.0%
GGGAGAGCTCCGTATCAATA+GGG - chr5.3:62063617-62063636 None:intergenic 50.0%
GTAGCGTGGTTCAGAAGAGT+TGG - chr5.3:62064287-62064306 None:intergenic 50.0%
GTGCCAACTCAGCAGTAAAG+TGG + chr5.3:62062139-62062158 MS.gene009566:intron 50.0%
! CAAACAGGCCGAGTTGGATT+AGG - chr5.3:62063154-62063173 None:intergenic 50.0%
! TTCAACGGCCGAGTTGGATT+AGG - chr5.3:62063260-62063279 None:intergenic 50.0%
! TTCGATTCGATCCCATGGGT+GGG + chr5.3:62062722-62062741 MS.gene009566:intron 50.0%
CGAAGGCCGTTGGTGTGATT+AGG + chr5.3:62063325-62063344 MS.gene009566:intron 55.0%
CGTGGTTCAGAAGAGTTGGG+AGG - chr5.3:62064283-62064302 None:intergenic 55.0%
GCCCCACTTTACTGCTGAGT+TGG - chr5.3:62062145-62062164 None:intergenic 55.0%
GGGGTGTAAAAGGATCAGGC+CGG - chr5.3:62063597-62063616 None:intergenic 55.0%
GGTGGAGAGTTCAGATACGG+TGG + chr5.3:62064720-62064739 MS.gene009566:CDS 55.0%
TAAAAGGATCAGGCCGGACC+AGG - chr5.3:62063591-62063610 None:intergenic 55.0%
TCAGCAGTAAAGTGGGGCCA+AGG + chr5.3:62062147-62062166 MS.gene009566:intron 55.0%
TTGCACAGTTGGCAGCCATG+TGG - chr5.3:62062083-62062102 None:intergenic 55.0%
! GTTCGATTCGATCCCATGGG+TGG + chr5.3:62062721-62062740 MS.gene009566:intron 55.0%
AGGCTAAGGCTACCCACCCA+TGG - chr5.3:62062737-62062756 None:intergenic 60.0%
GGCTAAGGCTACCCACCCAT+GGG - chr5.3:62062736-62062755 None:intergenic 60.0%
GTCGCCGACGAGGTAAAGGA+TGG - chr5.3:62064869-62064888 None:intergenic 60.0%
!! ATGGCGTCGACCTCTACGAG+AGG - chr5.3:62063118-62063137 None:intergenic 60.0%
CATGATGAGGGTCGCCGACG+AGG - chr5.3:62064879-62064898 None:intergenic 65.0%
GAGGGTCGCCGACGAGGTAA+AGG - chr5.3:62064873-62064892 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 62061807 62064924 62061807 ID=MS.gene009566
chr5.3 mRNA 62061807 62064924 62061807 ID=MS.gene009566.t1;Parent=MS.gene009566
chr5.3 exon 62061807 62061809 62061807 ID=MS.gene009566.t1.exon1;Parent=MS.gene009566.t1
chr5.3 CDS 62061807 62061809 62061807 ID=cds.MS.gene009566.t1;Parent=MS.gene009566.t1
chr5.3 exon 62062468 62062596 62062468 ID=MS.gene009566.t1.exon2;Parent=MS.gene009566.t1
chr5.3 CDS 62062468 62062596 62062468 ID=cds.MS.gene009566.t1;Parent=MS.gene009566.t1
chr5.3 exon 62063827 62064468 62063827 ID=MS.gene009566.t1.exon3;Parent=MS.gene009566.t1
chr5.3 CDS 62063827 62064468 62063827 ID=cds.MS.gene009566.t1;Parent=MS.gene009566.t1
chr5.3 exon 62064673 62064924 62064673 ID=MS.gene009566.t1.exon4;Parent=MS.gene009566.t1
chr5.3 CDS 62064673 62064924 62064673 ID=cds.MS.gene009566.t1;Parent=MS.gene009566.t1
Gene Sequence

>MS.gene009566

ATGGTATCTAACTTTTTTGTGTTTTTTAGAAAATTAAGTTCCATATTTTATTATATAAAAAAACTGATTTTTTTTATTAATTTCGATTTTTTTATATCGAAGTTAATTTCCAGAATTTTTAATTGTTTTTACATTTTTAGTTTCAAAATTAATATTTTGTGTGTTTATTATATATTTTCGAAAATCAATTAAAATTATATGTTTTATTTAATTTCAAAAATCTATTTTTTGTTTTTAAAAAATGGTTTTAAAATAATAAAATTAAAACAATTACCACATGGCTGCCAACTGTGCAAAGATACACAGTCAGCGAATGCCACATAGACATAAATGTGCCAACTCAGCAGTAAAGTGGGGCCAAGGACCTTTTTAAAAAACAAAAAATTTTGCAGGGACTGATTTCAATTTTTTTTTTTACAGGGACCAAAACCCAAATTGGCTATATTTGCAGCGATCAAAAGCATATTTTAGCCTTGATTATATAATGATAAAGTTGTAATGGTGTAATGTAGTTATCTATAATACTTTTTTTTTCTTAATATCAATTTTATAGCCAAATCACCGTGTAATGCAGGCACATACCAACTATATAATGATAAAGTTGTAATGGTGTAATGTAGTTATCTATAATACTTTTTTTTTCTTAATATCAATTTTATAGCCAAATCACCGTGTAATGCAGGCACATACCAACGACTGTGAAGAGACTTCTGATTCTTTGATGATTTCCGACCCTCATGCGTTTGATTGCTGCATTTGTTTTGCATCCTTGACTATCCCTGTGTTCGAGGTATGCATGTCAATTGTTAATCAATATTAATTTGTTGTCATATTTTGTGGTGATTGATTGTGATACTCCTTTCATATTTTGAGGGAAAAAACTTGAGAATCATGTAGAATGATTAAATTTATTTGTTCGATTCGATCCCATGGGTGGGTAGCCTTAGCCTATGTGTCTCGATACTCATACATACGCTACAACACATGTTAGATAACTCACAACCTTGGTGATTTTTTTGCCTTTGCGATACTCTTAAACATGTTTAGTTTTCTAAACTCAAAAAGCTGAATTTAAATTTCTGATTGAAATGAGTACAATTCACGTGTATTTTTGTTATTGAATATATGTGAAAATGGTAACAATAAGATTTAAAAGACCTTTGTTGTAAAAAAACACTTTTGAACACATTATTATATGATGTACTTTTTCCTAAATAATATTTCAACACATAGCAATGATATTGTGGTTTGGTAGAATGAGTGCAGAACATAGGGTTTAAGTGATAAGTACGGACGGAAACATGCTGACCTCTCGTAGAGGTCGACGCCATGACCTATTTAAAGCCTAATCCAACTCGGCCTGTTTGATAACAAGGATATGCTCATGCTTTTTGTAAAGTCTATTTAATTAAATAGACATGCCCAATGCTTACAAAAAGCCTATTTAAAGCCTAATCCAACTCGGCCGTTGAAGTTTTCTTTATAAATTAAGGCCGTCAAATGATTTGGTTTTTTAGTCGAAGGCCGTTGGTGTGATTAGGTCTTCTTAGGATTTGATTATTTAGTAGCAAACTTGTTGGTGTGTTTAGATCTTCATAAGATTTGACCTATTTAGTAGTTGAATTATTGGTGTTGCTAGGCCCTCGTGTAAAATAAGTATTCAGACTTTACCAAACCTTTAAAATTGTCGGAACATGCCTTAAAAACGAGTCTATGACAGACAATAGGCTAGACTCGTGGCCTATAGTCTTTGTAGTAGGCCAGACTTAGGCTTTATAAAGCCTGGTCCGGCCTGATCCTTTTACACCCCTATTGATACGGAGCTCTCCCTCATAACAAAAATATTAATTAACAACTAACATTAATCCTCCCATTTAAGGAAAAAAAATTAAAATTGAGTTGGTTATACATTTTACTGCATGGCTTGCTATTGCAAGAAAATCTATTTATTTTAATTAATTTTATTCTAGCAAATGTTTCCAAATCTAACTTGATGATTTTCTTGTATGTTGCAATTCAGTGTGATAATGGTCATGTTGTTTGCTCTACCTGCTGTTCTAAACATGGGAACAGATGTCAAAAATGTTTTACAGGCATTACCTTGAAACGATCCAGAGCCATTGAGAATCTATTGCAATCTATCAAAATATCATGTCTGAATGTAAAACACGGTTGCAAGGAGAGAATAACTTATAGTGGAAAGAGGAAGCATGAAGAAGAATGCATCTATGTGCCATGTTACTACCCCATTTTAGGTTGTGACTTTGCTGCGTCATCTAAAGTGTTATCTAACCATTTTAGCCATTTGCACAAGGATTCTCGAATCCAATTTTCATATGGTAGCCCCTTCTTTGTCACCTTGAAGTTTATTGATGAAGCCATTATTCTTCAAGAGAACAGTGTTGGGAAATTGTTCATTCTAAATAATAGAACTGAGAGTGTGGGAAATGCAGTCAATATTAGCTGCATTGGTCCTCCCAACTCTTCTGAACCACGCTACTATTATGATATTTTGGCTAGGTCCCAAAAATCCAGTGCAAAGTTCCACAGTTTTTCGAAGAATGTCCAACGAGTTTCTTTAGAAACTCTTTCATCAGAGTTCCTTTTAATTCAATTTGGTTTTTCCGAACTACTCAAGTTAGAAATTTGCATAACCCCCAAGGTATGTATCTCCTTTACTTTACCTCACTTGTTCTTCTCAATTAAAGTCTTGATATTTTCTTTTTCCTTTCGAATTTTAACTCTATCATTTTATATGAAATTCATTCGTTTTTTCAAATAACTAAAAAGATTGTAACCTGTTTTAGTTTTTTTTTCTGGTGTTATTTATTATTATTGATTAGTTTTGTTGGTAATTGTGGTGTAGATGCAAATCTTTGTACAAACCCTGACTGGAAAGATTATCCCTTTGAAGGTGGAGAGTTCAGATACGGTGGCCAGCGTGAAAGCAAAAATTTGTGACAAGGAATGGTTCATATTGCACCAGCATTATCTGTTCCTTGGAAATAAGCAACTAGATGACCGCCTCACCATTGATGATTACGACATCCAAGATAAGTCCATCCTTTACCTCGTCGGCGACCCTCATCATGAAGACAACCACTCACCCTATAGCTAG

Protein sequence

>MS.gene009566.t1

MPNHRVMQAHTNDCEETSDSLMISDPHAFDCCICFASLTIPVFECDNGHVVCSTCCSKHGNRCQKCFTGITLKRSRAIENLLQSIKISCLNVKHGCKERITYSGKRKHEEECIYVPCYYPILGCDFAASSKVLSNHFSHLHKDSRIQFSYGSPFFVTLKFIDEAIILQENSVGKLFILNNRTESVGNAVNISCIGPPNSSEPRYYYDILARSQKSSAKFHSFSKNVQRVSLETLSSEFLLIQFGFSELLKLEICITPKMQIFVQTLTGKIIPLKVESSDTVASVKAKICDKEWFILHQHYLFLGNKQLDDRLTIDDYDIQDKSILYLVGDPHHEDNHSPYS