AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017315


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017315.t1 MTR_5g076720 68.548 248 77 1 1 247 141 388 3.87e-117 340
MS.gene017315.t1 MTR_5g076810 65.041 246 83 2 1 245 23 266 1.41e-108 314
MS.gene017315.t1 MTR_5g067400 63.673 245 87 1 1 245 70 312 1.37e-104 306
MS.gene017315.t1 MTR_7g024290 64.634 246 84 2 1 245 70 313 2.29e-103 303
MS.gene017315.t1 MTR_1g046650 63.158 247 88 2 1 247 1 244 1.77e-102 298
MS.gene017315.t1 MTR_1g046650 63.158 247 88 2 1 247 70 313 1.51e-101 298
MS.gene017315.t1 MTR_1g046650 63.158 247 88 2 1 247 70 313 2.09e-101 298
MS.gene017315.t1 MTR_1g046650 63.158 247 88 2 1 247 101 344 1.09e-100 297
MS.gene017315.t1 MTR_2g038420 61.600 250 93 2 1 247 84 333 4.76e-99 293
MS.gene017315.t1 MTR_1g046640 62.041 245 90 2 1 245 70 311 7.33e-99 291
MS.gene017315.t1 MTR_5g076520 61.224 245 93 2 1 243 70 314 8.80e-98 289
MS.gene017315.t1 MTR_5g076505 58.943 246 100 1 1 245 66 311 4.72e-96 284
MS.gene017315.t1 MTR_5g061290 57.200 250 104 1 1 247 76 325 1.02e-94 281
MS.gene017315.t1 MTR_7g094390 59.184 245 98 1 1 245 231 473 2.40e-93 283
MS.gene017315.t1 MTR_2g038430 57.752 258 98 2 1 247 84 341 2.59e-93 278
MS.gene017315.t1 MTR_5g076660 57.661 248 100 2 1 245 92 337 4.43e-90 270
MS.gene017315.t1 MTR_5g076370 55.378 251 106 3 1 248 93 340 4.78e-85 257
MS.gene017315.t1 MTR_5g076820 62.255 204 73 3 1 201 77 279 2.72e-80 243
MS.gene017315.t1 MTR_5g076540 69.811 159 48 0 1 159 70 228 1.17e-74 227
MS.gene017315.t1 MTR_5g077020 68.675 166 46 3 5 168 45 206 1.27e-69 214
MS.gene017315.t1 MTR_4g058025 70.435 115 33 1 12 125 14 128 1.14e-48 159
MS.gene017315.t1 MTR_4g094468 40.828 169 95 3 1 166 156 322 6.88e-35 127
MS.gene017315.t1 MTR_7g105080 50.000 72 36 0 174 245 1 72 6.23e-14 67.0
MS.gene017315.t1 MTR_3g092130 50.000 72 36 0 174 245 1 72 6.23e-14 67.0
MS.gene017315.t1 MTR_1g059690 50.000 72 36 0 174 245 1 72 6.23e-14 67.0
MS.gene017315.t1 MTR_3g092130 50.000 72 36 0 174 245 1 72 6.41e-14 67.4
MS.gene017315.t1 MTR_4g088485 45.122 82 45 0 164 245 128 209 9.05e-14 68.6
MS.gene017315.t1 MTR_4g088485 50.000 72 36 0 174 245 1 72 6.95e-13 66.2
MS.gene017315.t1 MTR_7g116360 45.122 82 45 0 164 245 67 148 9.35e-14 68.9
MS.gene017315.t1 MTR_7g116360 45.122 82 45 0 164 245 143 224 9.35e-14 68.9
MS.gene017315.t1 MTR_7g116360 50.000 72 36 0 174 245 1 72 6.50e-13 66.6
MS.gene017315.t1 MTR_1g066390 45.122 82 45 0 164 245 67 148 1.02e-13 68.9
MS.gene017315.t1 MTR_1g066390 45.122 82 45 0 164 245 143 224 1.02e-13 68.9
MS.gene017315.t1 MTR_1g066390 50.000 72 36 0 174 245 1 72 7.13e-13 66.6
MS.gene017315.t1 MTR_5g092700 50.000 72 36 0 174 245 1 72 1.36e-13 67.0
MS.gene017315.t1 MTR_4g073580 50.000 72 36 0 174 245 1 72 1.36e-13 67.0
MS.gene017315.t1 MTR_4g080920 45.122 82 45 0 164 245 67 148 1.73e-13 68.2
MS.gene017315.t1 MTR_4g080920 48.611 72 37 0 174 245 1 72 4.85e-12 64.3
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 67 148 1.97e-13 68.6
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 143 224 1.97e-13 68.6
MS.gene017315.t1 MTR_4g081010 50.000 72 36 0 174 245 1 72 1.19e-12 66.6
MS.gene017315.t1 MTR_7g116360 45.122 82 45 0 164 245 115 196 2.03e-13 68.6
MS.gene017315.t1 MTR_7g116360 45.122 82 45 0 164 245 191 272 2.03e-13 68.6
MS.gene017315.t1 MTR_7g116360 42.000 100 56 1 146 245 23 120 1.21e-12 66.6
MS.gene017315.t1 MTR_6g061930 45.122 82 45 0 164 245 67 148 2.04e-13 68.9
MS.gene017315.t1 MTR_6g061930 45.122 82 45 0 164 245 204 285 2.04e-13 68.9
MS.gene017315.t1 MTR_6g061930 50.000 72 36 0 174 245 1 72 1.52e-12 66.2
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 67 148 2.07e-13 68.6
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 143 224 2.07e-13 68.6
MS.gene017315.t1 MTR_8g018230 50.000 72 36 0 174 245 1 72 1.35e-12 66.2
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 67 148 2.26e-13 68.9
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 143 224 2.26e-13 68.9
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 219 300 2.26e-13 68.9
MS.gene017315.t1 MTR_4g081010 50.000 72 36 0 174 245 1 72 1.45e-12 66.6
MS.gene017315.t1 MTR_8g088060 50.000 72 36 0 174 245 1 72 2.29e-13 66.2
MS.gene017315.t1 MTR_5g033960 50.000 72 36 0 174 245 1 72 2.56e-13 66.2
MS.gene017315.t1 MTR_4g073580 50.000 72 36 0 174 245 1 72 2.61e-13 66.6
MS.gene017315.t1 MTR_8g081020 45.122 82 45 0 164 245 67 148 2.89e-13 68.9
MS.gene017315.t1 MTR_8g081020 45.122 82 45 0 164 245 143 224 2.89e-13 68.9
MS.gene017315.t1 MTR_8g081020 45.122 82 45 0 164 245 219 300 2.89e-13 68.9
MS.gene017315.t1 MTR_8g081020 45.122 82 45 0 164 245 295 376 2.89e-13 68.9
MS.gene017315.t1 MTR_8g081020 50.000 72 36 0 174 245 1 72 1.76e-12 66.6
MS.gene017315.t1 MTR_4g080797 45.122 82 45 0 164 245 67 148 3.12e-13 68.9
MS.gene017315.t1 MTR_4g080797 45.122 82 45 0 164 245 143 224 3.12e-13 68.9
MS.gene017315.t1 MTR_4g080797 45.122 82 45 0 164 245 219 300 3.12e-13 68.9
MS.gene017315.t1 MTR_4g080797 45.122 82 45 0 164 245 295 376 3.12e-13 68.9
MS.gene017315.t1 MTR_4g080797 50.000 72 36 0 174 245 1 72 1.93e-12 66.6
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 67 148 3.12e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 143 224 3.12e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 219 300 3.12e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 295 376 3.12e-13 68.9
MS.gene017315.t1 MTR_8g018230 50.000 72 36 0 174 245 1 72 1.93e-12 66.6
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 67 148 3.18e-13 68.9
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 143 224 3.18e-13 68.9
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 219 300 3.18e-13 68.9
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 295 376 3.18e-13 68.9
MS.gene017315.t1 MTR_4g081010 50.000 72 36 0 174 245 1 72 1.97e-12 66.6
MS.gene017315.t1 MTR_4g091580 45.122 82 45 0 164 245 67 148 3.21e-13 68.9
MS.gene017315.t1 MTR_4g091580 45.122 82 45 0 164 245 143 224 3.21e-13 68.9
MS.gene017315.t1 MTR_4g091580 45.122 82 45 0 164 245 295 376 3.21e-13 68.9
MS.gene017315.t1 MTR_4g091580 45.122 82 45 0 164 245 219 300 4.30e-13 68.6
MS.gene017315.t1 MTR_4g091580 50.000 72 36 0 174 245 1 72 1.95e-12 66.6
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 67 148 3.72e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 143 224 3.72e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 219 300 3.72e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 295 376 3.72e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 371 452 3.72e-13 68.9
MS.gene017315.t1 MTR_8g018230 50.000 72 36 0 174 245 1 72 2.24e-12 66.6
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 67 148 3.72e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 143 224 3.72e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 219 300 3.72e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 295 376 3.72e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 371 452 3.72e-13 68.9
MS.gene017315.t1 MTR_8g018230 50.000 72 36 0 174 245 1 72 2.24e-12 66.6
MS.gene017315.t1 MTR_4g091580 45.122 82 45 0 164 245 67 148 3.97e-13 68.9
MS.gene017315.t1 MTR_4g091580 45.122 82 45 0 164 245 143 224 3.97e-13 68.9
MS.gene017315.t1 MTR_4g091580 45.122 82 45 0 164 245 219 300 3.97e-13 68.9
MS.gene017315.t1 MTR_4g091580 45.122 82 45 0 164 245 371 452 3.97e-13 68.9
MS.gene017315.t1 MTR_4g091580 45.122 82 45 0 164 245 447 528 3.97e-13 68.9
MS.gene017315.t1 MTR_4g091580 45.122 82 45 0 164 245 295 376 1.67e-12 67.0
MS.gene017315.t1 MTR_4g091580 50.000 72 36 0 174 245 1 72 2.36e-12 66.6
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 67 148 4.13e-13 68.9
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 143 224 4.13e-13 68.9
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 219 300 4.13e-13 68.9
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 295 376 4.13e-13 68.9
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 371 452 4.13e-13 68.9
MS.gene017315.t1 MTR_4g081010 45.122 82 45 0 164 245 447 528 4.13e-13 68.9
MS.gene017315.t1 MTR_4g081010 50.000 72 36 0 174 245 1 72 2.48e-12 66.6
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 67 148 4.13e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 143 224 4.13e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 219 300 4.13e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 295 376 4.13e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 371 452 4.13e-13 68.9
MS.gene017315.t1 MTR_8g018230 45.122 82 45 0 164 245 447 528 4.13e-13 68.9
MS.gene017315.t1 MTR_8g018230 50.000 72 36 0 174 245 1 72 2.48e-12 66.6
MS.gene017315.t1 MTR_4g088495 45.122 82 45 0 164 245 67 148 5.90e-13 68.6
MS.gene017315.t1 MTR_4g088495 45.122 82 45 0 164 245 143 224 5.90e-13 68.6
MS.gene017315.t1 MTR_4g088495 45.122 82 45 0 164 245 219 300 5.90e-13 68.6
MS.gene017315.t1 MTR_4g088495 45.122 82 45 0 164 245 295 376 5.90e-13 68.6
MS.gene017315.t1 MTR_4g088495 45.122 82 45 0 164 245 371 452 5.90e-13 68.6
MS.gene017315.t1 MTR_4g088495 45.122 82 45 0 164 245 447 528 5.90e-13 68.6
MS.gene017315.t1 MTR_4g088495 45.122 82 45 0 164 245 523 604 5.90e-13 68.6
MS.gene017315.t1 MTR_4g088495 45.122 82 45 0 164 245 599 680 5.90e-13 68.6
MS.gene017315.t1 MTR_4g088495 45.122 82 45 0 164 245 675 756 5.90e-13 68.6
MS.gene017315.t1 MTR_4g088495 45.122 82 45 0 164 245 751 832 5.90e-13 68.6
MS.gene017315.t1 MTR_4g088495 50.000 72 36 0 174 245 1 72 1.82e-12 67.0
MS.gene017315.t1 MTR_7g085590 27.273 143 100 1 1 139 111 253 5.42e-11 62.0
MS.gene017315.t1 MTR_5g061310 43.056 72 41 0 176 247 4 75 9.44e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017315.t1 AT5G37930 30.814 172 115 2 1 168 169 340 2.10e-18 83.6
MS.gene017315.t1 AT4G05050 45.122 82 45 0 164 245 67 148 2.62e-14 68.9
MS.gene017315.t1 AT4G05050 50.000 72 36 0 174 245 1 72 1.98e-13 66.6
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 67 148 2.62e-14 68.9
MS.gene017315.t1 AT4G05320 50.000 72 36 0 174 245 1 72 1.98e-13 66.6
MS.gene017315.t1 AT3G52590 50.000 72 36 0 174 245 1 72 7.77e-14 67.0
MS.gene017315.t1 AT2G36170 50.000 72 36 0 174 245 1 72 7.77e-14 67.0
MS.gene017315.t1 AT4G05050 45.122 82 45 0 164 245 67 148 9.80e-14 68.9
MS.gene017315.t1 AT4G05050 45.122 82 45 0 164 245 143 224 9.80e-14 68.9
MS.gene017315.t1 AT4G05050 50.000 72 36 0 174 245 1 72 6.81e-13 66.6
MS.gene017315.t1 AT4G05050 45.122 82 45 0 164 245 67 148 9.80e-14 68.9
MS.gene017315.t1 AT4G05050 45.122 82 45 0 164 245 143 224 9.80e-14 68.9
MS.gene017315.t1 AT4G05050 50.000 72 36 0 174 245 1 72 6.81e-13 66.6
MS.gene017315.t1 AT4G05050 45.122 82 45 0 164 245 67 148 9.80e-14 68.9
MS.gene017315.t1 AT4G05050 45.122 82 45 0 164 245 143 224 9.80e-14 68.9
MS.gene017315.t1 AT4G05050 50.000 72 36 0 174 245 1 72 6.81e-13 66.6
MS.gene017315.t1 AT4G02890 45.122 82 45 0 164 245 67 148 9.80e-14 68.9
MS.gene017315.t1 AT4G02890 45.122 82 45 0 164 245 143 224 9.80e-14 68.9
MS.gene017315.t1 AT4G02890 50.000 72 36 0 174 245 1 72 6.81e-13 66.6
MS.gene017315.t1 AT4G02890 45.122 82 45 0 164 245 67 148 9.80e-14 68.9
MS.gene017315.t1 AT4G02890 45.122 82 45 0 164 245 143 224 9.80e-14 68.9
MS.gene017315.t1 AT4G02890 50.000 72 36 0 174 245 1 72 6.81e-13 66.6
MS.gene017315.t1 AT1G55060 46.341 82 44 0 164 245 67 148 1.08e-13 68.9
MS.gene017315.t1 AT1G55060 42.683 82 47 0 164 245 143 224 2.30e-11 62.4
MS.gene017315.t1 AT5G37640 45.122 82 45 0 164 245 69 150 1.10e-13 70.1
MS.gene017315.t1 AT5G37640 45.783 83 44 1 164 245 221 303 2.34e-11 63.2
MS.gene017315.t1 AT5G37640 42.683 82 47 0 164 245 145 226 6.62e-11 62.0
MS.gene017315.t1 AT1G66620 27.273 176 119 3 1 168 100 274 1.16e-13 69.7
MS.gene017315.t1 AT1G23410 50.000 72 36 0 174 245 1 72 1.86e-13 66.6
MS.gene017315.t1 AT2G35635 50.000 72 36 0 174 245 1 72 1.94e-13 66.6
MS.gene017315.t1 AT5G03240 45.122 82 45 0 164 245 67 148 2.16e-13 68.9
MS.gene017315.t1 AT5G03240 45.122 82 45 0 164 245 143 224 2.16e-13 68.9
MS.gene017315.t1 AT5G03240 45.122 82 45 0 164 245 219 300 2.16e-13 68.9
MS.gene017315.t1 AT5G03240 50.000 72 36 0 174 245 1 72 1.38e-12 66.6
MS.gene017315.t1 AT5G03240 45.122 82 45 0 164 245 67 148 2.16e-13 68.9
MS.gene017315.t1 AT5G03240 45.122 82 45 0 164 245 143 224 2.16e-13 68.9
MS.gene017315.t1 AT5G03240 45.122 82 45 0 164 245 219 300 2.16e-13 68.9
MS.gene017315.t1 AT5G03240 50.000 72 36 0 174 245 1 72 1.38e-12 66.6
MS.gene017315.t1 AT5G03240 45.122 82 45 0 164 245 67 148 2.16e-13 68.9
MS.gene017315.t1 AT5G03240 45.122 82 45 0 164 245 143 224 2.16e-13 68.9
MS.gene017315.t1 AT5G03240 45.122 82 45 0 164 245 219 300 2.16e-13 68.9
MS.gene017315.t1 AT5G03240 50.000 72 36 0 174 245 1 72 1.38e-12 66.6
MS.gene017315.t1 AT5G20620 45.122 82 45 0 164 245 67 148 2.16e-13 68.9
MS.gene017315.t1 AT5G20620 45.122 82 45 0 164 245 143 224 2.16e-13 68.9
MS.gene017315.t1 AT5G20620 45.122 82 45 0 164 245 219 300 2.16e-13 68.9
MS.gene017315.t1 AT5G20620 50.000 72 36 0 174 245 1 72 1.38e-12 66.6
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 67 148 2.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 143 224 2.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 219 300 2.27e-13 68.9
MS.gene017315.t1 AT4G05320 50.000 72 36 0 174 245 1 72 1.48e-12 66.6
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 67 148 2.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 143 224 2.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 219 300 2.27e-13 68.9
MS.gene017315.t1 AT4G05320 50.000 72 36 0 174 245 1 72 1.48e-12 66.6
MS.gene017315.t1 AT4G02890 45.122 82 45 0 164 245 67 148 2.27e-13 68.9
MS.gene017315.t1 AT4G02890 45.122 82 45 0 164 245 143 224 2.27e-13 68.9
MS.gene017315.t1 AT4G02890 45.122 82 45 0 164 245 219 300 2.27e-13 68.9
MS.gene017315.t1 AT4G02890 50.000 72 36 0 174 245 1 72 1.48e-12 66.6
MS.gene017315.t1 AT4G02890 45.122 82 45 0 164 245 67 148 2.27e-13 68.9
MS.gene017315.t1 AT4G02890 45.122 82 45 0 164 245 143 224 2.27e-13 68.9
MS.gene017315.t1 AT4G02890 45.122 82 45 0 164 245 219 300 2.27e-13 68.9
MS.gene017315.t1 AT4G02890 50.000 72 36 0 174 245 1 72 1.48e-12 66.6
MS.gene017315.t1 AT2G47110 50.000 72 36 0 174 245 1 72 2.28e-13 66.2
MS.gene017315.t1 AT2G47110 50.000 72 36 0 174 245 1 72 2.28e-13 66.2
MS.gene017315.t1 AT1G31340 50.000 72 36 0 174 245 1 72 2.33e-13 66.2
MS.gene017315.t1 AT3G62250 50.000 72 36 0 174 245 1 72 2.38e-13 66.2
MS.gene017315.t1 AT1G65350 45.122 82 45 0 164 245 142 223 2.71e-13 68.9
MS.gene017315.t1 AT1G65350 50.000 72 36 0 174 245 1 72 1.32e-12 66.6
MS.gene017315.t1 AT1G65350 43.902 82 45 1 164 245 67 147 7.89e-11 61.6
MS.gene017315.t1 AT5G20620 45.122 82 45 0 164 245 67 148 3.19e-13 68.9
MS.gene017315.t1 AT5G20620 45.122 82 45 0 164 245 143 224 3.19e-13 68.9
MS.gene017315.t1 AT5G20620 45.122 82 45 0 164 245 219 300 3.19e-13 68.9
MS.gene017315.t1 AT5G20620 45.122 82 45 0 164 245 295 376 3.19e-13 68.9
MS.gene017315.t1 AT5G20620 50.000 72 36 0 174 245 1 72 1.93e-12 66.6
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 67 148 3.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 143 224 3.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 219 300 3.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 295 376 3.27e-13 68.9
MS.gene017315.t1 AT4G05320 50.000 72 36 0 174 245 1 72 2.02e-12 66.6
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 67 148 3.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 143 224 3.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 219 300 3.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 295 376 3.27e-13 68.9
MS.gene017315.t1 AT4G05320 50.000 72 36 0 174 245 1 72 2.02e-12 66.6
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 67 148 3.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 143 224 3.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 219 300 3.27e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 295 376 3.27e-13 68.9
MS.gene017315.t1 AT4G05320 50.000 72 36 0 174 245 1 72 2.02e-12 66.6
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 67 148 3.90e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 143 224 3.90e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 219 300 3.90e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 295 376 3.90e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 371 452 3.90e-13 68.9
MS.gene017315.t1 AT4G05320 50.000 72 36 0 174 245 1 72 2.35e-12 66.6
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 67 148 3.90e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 143 224 3.90e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 219 300 3.90e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 295 376 3.90e-13 68.9
MS.gene017315.t1 AT4G05320 45.122 82 45 0 164 245 371 452 3.90e-13 68.9
MS.gene017315.t1 AT4G05320 50.000 72 36 0 174 245 1 72 2.35e-12 66.6
MS.gene017315.t1 AT3G09790 46.341 82 44 0 164 245 69 150 1.42e-12 67.4
MS.gene017315.t1 AT3G09790 46.341 82 44 0 164 245 69 150 1.42e-12 67.4
MS.gene017315.t1 AT1G53930 45.714 70 38 0 176 245 88 157 1.82e-12 63.9
MS.gene017315.t1 AT5G37870 29.193 161 107 6 1 155 101 260 3.70e-11 62.4
MS.gene017315.t1 AT1G66650 26.816 179 120 6 1 168 142 320 7.02e-11 62.0

Find 53 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTGATTTCTTAACTCTA+AGG 0.248144 5.1:-59490970 None:intergenic
GTTCTTCAAGAGGAAAATTA+TGG 0.263266 5.1:+59490428 MS.gene017315:CDS
GCAGTCAATATTTGCTGCTT+TGG 0.307306 5.1:+59490494 MS.gene017315:CDS
AATAATAATACTACTCGTTT+AGG 0.327299 5.1:+59490467 MS.gene017315:CDS
CTAGGCCCTGTACAAAGATT+TGG 0.337041 5.1:-59490931 None:intergenic
ATCTTTGTACAGGGCCTAGA+TGG 0.339349 5.1:+59490935 MS.gene017315:CDS
TACTCGGACTCGGGTGTGTC+TGG 0.357737 5.1:-59490518 None:intergenic
GCCGCCCAACGTCTGATCTT+TGG 0.363598 5.1:+59491043 MS.gene017315:CDS
CTGCAACCATAGTTCACATT+TGG 0.381729 5.1:-59490200 None:intergenic
GAGTTTCTTGTGATTCCATT+TGG 0.389324 5.1:+59490638 MS.gene017315:CDS
AACAAAGTCACAACCTGAAA+AGG 0.402082 5.1:-59490291 None:intergenic
ATCAGACGTTGGGCGGCCAC+TGG 0.402289 5.1:-59491037 None:intergenic
TATAAATGTTGTAGTCGAAA+AGG 0.405882 5.1:-59491093 None:intergenic
GGTTTCATCATTAGACTTCA+AGG 0.410456 5.1:-59490402 None:intergenic
CAAATGTTGGATGTACTAAT+CGG 0.434605 5.1:-59491151 None:intergenic
CAAATGTGAACTATGGTTGC+AGG 0.446645 5.1:+59490201 MS.gene017315:CDS
TCATGTCCAAATGTGAACTA+TGG 0.450747 5.1:+59490194 MS.gene017315:CDS
GTCTGATTTCTTAACTCTAA+GGG 0.469256 5.1:-59490969 None:intergenic
GGGTCATATACTTTCCATCT+AGG 0.473745 5.1:-59490949 None:intergenic
GCAGATCCAAATCTTTGTAC+AGG 0.475455 5.1:+59490925 MS.gene017315:intron
TGTTGTAGTCGAAAAGGGTC+AGG 0.478699 5.1:-59491087 None:intergenic
TATTGCAAAGAATGTCCAAC+AGG 0.484330 5.1:+59490592 MS.gene017315:CDS
CAATATATCATAACTATACT+CGG 0.493864 5.1:-59490534 None:intergenic
ATAAATGTTGTAGTCGAAAA+GGG 0.494936 5.1:-59491092 None:intergenic
AAAGGGTCAGGTTTCCATCC+AGG 0.513561 5.1:-59491075 None:intergenic
AGAGGTTCAGAAGAACCAAA+TGG 0.514036 5.1:-59490653 None:intergenic
GATCTTTGGCAGTAGATACC+TGG 0.533839 5.1:+59491057 MS.gene017315:CDS
TGAAACCATTGTTCTTCAAG+AGG 0.538905 5.1:+59490418 MS.gene017315:CDS
ACAAAGTCACAACCTGAAAA+GGG 0.540410 5.1:-59490290 None:intergenic
AGACTTCAAGGAGACAATGA+AGG 0.541721 5.1:-59490390 None:intergenic
ATGCAAATTTCTAGCTTGAG+AGG 0.547282 5.1:-59490671 None:intergenic
AGGGACAGTAACATGGCTTA+CGG 0.547857 5.1:-59490271 None:intergenic
ACTGCCAAAGATCAGACGTT+GGG 0.548550 5.1:-59491047 None:intergenic
AAATAAGTTACACTAGAAAG+AGG 0.554335 5.1:+59490228 MS.gene017315:CDS
TCAGACGTTGGGCGGCCACT+GGG 0.557324 5.1:-59491036 None:intergenic
GAATCATTCCTCTCACTCTA+CGG 0.561502 5.1:+59491118 MS.gene017315:CDS
GGTGGACAATTGTCAAATGT+TGG 0.563243 5.1:-59491164 None:intergenic
GATTTGCTAAAGTAACCTGT+TGG 0.564767 5.1:-59490607 None:intergenic
ATCATAACTATACTCGGACT+CGG 0.565356 5.1:-59490528 None:intergenic
TGCATTTCAGCGATAAACAC+GGG 0.578429 5.1:+59490336 MS.gene017315:CDS
TCATAACTATACTCGGACTC+GGG 0.578996 5.1:-59490527 None:intergenic
CCTGAAAAGGGACAGTAACA+TGG 0.591203 5.1:-59490278 None:intergenic
ATCGTCTTCCGTAGAGTGAG+AGG 0.594396 5.1:-59491126 None:intergenic
GCCAAAGATCAGACGTTGGG+CGG 0.601874 5.1:-59491044 None:intergenic
CAGATCCAAATCTTTGTACA+GGG 0.609183 5.1:+59490926 MS.gene017315:intron
GTGCATTTCAGCGATAAACA+CGG 0.612101 5.1:+59490335 MS.gene017315:CDS
AAATGTGAACTATGGTTGCA+GGG 0.614511 5.1:+59490202 MS.gene017315:CDS
TTGCATTCACGTAACCTCCA+CGG 0.623413 5.1:+59490688 MS.gene017315:CDS
TACTGCCAAAGATCAGACGT+TGG 0.646446 5.1:-59491048 None:intergenic
TTTGGCAGTAGATACCTGGA+TGG 0.649571 5.1:+59491061 MS.gene017315:CDS
GCATTTCAGCGATAAACACG+GGG 0.695447 5.1:+59490337 MS.gene017315:CDS
GGATATAGTAAATACCGTGG+AGG 0.704152 5.1:-59490702 None:intergenic
TGACAAGACTAAGATCCCAG+TGG 0.772185 5.1:+59491021 MS.gene017315:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCTTTTATTGATTTAA+TGG + chr5.1:59490892-59490911 MS.gene017315:intron 10.0%
!!! ATCAAATCAAATTTTCTTAT+GGG + chr5.1:59490363-59490382 MS.gene017315:CDS 15.0%
!!! TATCAAATCAAATTTTCTTA+TGG + chr5.1:59490362-59490381 MS.gene017315:CDS 15.0%
!! AATAATAATACTACTCGTTT+AGG + chr5.1:59490467-59490486 MS.gene017315:CDS 20.0%
!! CAATATATCATAACTATACT+CGG - chr5.1:59490537-59490556 None:intergenic 20.0%
!! GCAAATTATCTCTAATTTAT+CGG + chr5.1:59490795-59490814 MS.gene017315:intron 20.0%
!! TAAAATACCAAGATTTCAAT+AGG - chr5.1:59490750-59490769 None:intergenic 20.0%
! AAATAAGTTACACTAGAAAG+AGG + chr5.1:59490228-59490247 MS.gene017315:CDS 25.0%
! AAATAGCCAAAACAAAGAAT+AGG - chr5.1:59490726-59490745 None:intergenic 25.0%
! ATAAATGTTGTAGTCGAAAA+GGG - chr5.1:59491095-59491114 None:intergenic 25.0%
! TATAAATGTTGTAGTCGAAA+AGG - chr5.1:59491096-59491115 None:intergenic 25.0%
!! CTATTTTCCTATTGAAATCT+TGG + chr5.1:59490740-59490759 MS.gene017315:intron 25.0%
!!! AAACACAAACAACCTTTTTT+TGG - chr5.1:59490832-59490851 None:intergenic 25.0%
!!! CTATATCCTATTCTTTGTTT+TGG + chr5.1:59490717-59490736 MS.gene017315:intron 25.0%
!!! TATTGATTTAATGGCAATTG+TGG + chr5.1:59490901-59490920 MS.gene017315:intron 25.0%
ATAGGATATAGTAAATACCG+TGG - chr5.1:59490708-59490727 None:intergenic 30.0%
CAAATGTTGGATGTACTAAT+CGG - chr5.1:59491154-59491173 None:intergenic 30.0%
GTCTGATTTCTTAACTCTAA+GGG - chr5.1:59490972-59490991 None:intergenic 30.0%
GTTCTTCAAGAGGAAAATTA+TGG + chr5.1:59490428-59490447 MS.gene017315:CDS 30.0%
TGTCTGATTTCTTAACTCTA+AGG - chr5.1:59490973-59490992 None:intergenic 30.0%
! ATTTTCCTCTTGAAGAACAA+TGG - chr5.1:59490426-59490445 None:intergenic 30.0%
!! GTTTTTCAAACGCCAAAAAA+AGG + chr5.1:59490817-59490836 MS.gene017315:intron 30.0%
AAATGTGAACTATGGTTGCA+GGG + chr5.1:59490202-59490221 MS.gene017315:CDS 35.0%
AACAAAGTCACAACCTGAAA+AGG - chr5.1:59490294-59490313 None:intergenic 35.0%
ACAAAGTCACAACCTGAAAA+GGG - chr5.1:59490293-59490312 None:intergenic 35.0%
ATCATAACTATACTCGGACT+CGG - chr5.1:59490531-59490550 None:intergenic 35.0%
CAGATCCAAATCTTTGTACA+GGG + chr5.1:59490926-59490945 MS.gene017315:intron 35.0%
GAGTTTCTTGTGATTCCATT+TGG + chr5.1:59490638-59490657 MS.gene017315:CDS 35.0%
GGTTTCATCATTAGACTTCA+AGG - chr5.1:59490405-59490424 None:intergenic 35.0%
TATTGCAAAGAATGTCCAAC+AGG + chr5.1:59490592-59490611 MS.gene017315:CDS 35.0%
TCATGTCCAAATGTGAACTA+TGG + chr5.1:59490194-59490213 MS.gene017315:CDS 35.0%
TGAAACCATTGTTCTTCAAG+AGG + chr5.1:59490418-59490437 MS.gene017315:CDS 35.0%
!! ATGCAAATTTCTAGCTTGAG+AGG - chr5.1:59490674-59490693 None:intergenic 35.0%
!! GATTTGCTAAAGTAACCTGT+TGG - chr5.1:59490610-59490629 None:intergenic 35.0%
AGACTTCAAGGAGACAATGA+AGG - chr5.1:59490393-59490412 None:intergenic 40.0%
AGAGGTTCAGAAGAACCAAA+TGG - chr5.1:59490656-59490675 None:intergenic 40.0%
CAAATGTGAACTATGGTTGC+AGG + chr5.1:59490201-59490220 MS.gene017315:CDS 40.0%
CTGCAACCATAGTTCACATT+TGG - chr5.1:59490203-59490222 None:intergenic 40.0%
GAATCATTCCTCTCACTCTA+CGG + chr5.1:59491118-59491137 MS.gene017315:CDS 40.0%
GCAGATCCAAATCTTTGTAC+AGG + chr5.1:59490925-59490944 MS.gene017315:intron 40.0%
GGATATAGTAAATACCGTGG+AGG - chr5.1:59490705-59490724 None:intergenic 40.0%
GGGTCATATACTTTCCATCT+AGG - chr5.1:59490952-59490971 None:intergenic 40.0%
GTGCATTTCAGCGATAAACA+CGG + chr5.1:59490335-59490354 MS.gene017315:CDS 40.0%
TCATAACTATACTCGGACTC+GGG - chr5.1:59490530-59490549 None:intergenic 40.0%
TGCATTTCAGCGATAAACAC+GGG + chr5.1:59490336-59490355 MS.gene017315:CDS 40.0%
! GCAGTCAATATTTGCTGCTT+TGG + chr5.1:59490494-59490513 MS.gene017315:CDS 40.0%
ACTGCCAAAGATCAGACGTT+GGG - chr5.1:59491050-59491069 None:intergenic 45.0%
AGGGACAGTAACATGGCTTA+CGG - chr5.1:59490274-59490293 None:intergenic 45.0%
ATCTTTGTACAGGGCCTAGA+TGG + chr5.1:59490935-59490954 MS.gene017315:CDS 45.0%
CCTGAAAAGGGACAGTAACA+TGG - chr5.1:59490281-59490300 None:intergenic 45.0%
CTAGGCCCTGTACAAAGATT+TGG - chr5.1:59490934-59490953 None:intergenic 45.0%
GATCTTTGGCAGTAGATACC+TGG + chr5.1:59491057-59491076 MS.gene017315:CDS 45.0%
GCATTTCAGCGATAAACACG+GGG + chr5.1:59490337-59490356 MS.gene017315:CDS 45.0%
TACTGCCAAAGATCAGACGT+TGG - chr5.1:59491051-59491070 None:intergenic 45.0%
TGACAAGACTAAGATCCCAG+TGG + chr5.1:59491021-59491040 MS.gene017315:CDS 45.0%
TGTTGTAGTCGAAAAGGGTC+AGG - chr5.1:59491090-59491109 None:intergenic 45.0%
TTGCATTCACGTAACCTCCA+CGG + chr5.1:59490688-59490707 MS.gene017315:CDS 45.0%
TTTGGCAGTAGATACCTGGA+TGG + chr5.1:59491061-59491080 MS.gene017315:CDS 45.0%
! CCATGTTACTGTCCCTTTTC+AGG + chr5.1:59490278-59490297 MS.gene017315:CDS 45.0%
AAAGGGTCAGGTTTCCATCC+AGG - chr5.1:59491078-59491097 None:intergenic 50.0%
ATCGTCTTCCGTAGAGTGAG+AGG - chr5.1:59491129-59491148 None:intergenic 50.0%
GCCAAAGATCAGACGTTGGG+CGG - chr5.1:59491047-59491066 None:intergenic 55.0%
GCCGCCCAACGTCTGATCTT+TGG + chr5.1:59491043-59491062 MS.gene017315:CDS 60.0%
TACTCGGACTCGGGTGTGTC+TGG - chr5.1:59490521-59490540 None:intergenic 60.0%
ATCAGACGTTGGGCGGCCAC+TGG - chr5.1:59491040-59491059 None:intergenic 65.0%
TCAGACGTTGGGCGGCCACT+GGG - chr5.1:59491039-59491058 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 59490191 59491174 59490191 ID=MS.gene017315
chr5.1 mRNA 59490191 59491174 59490191 ID=MS.gene017315.t1;Parent=MS.gene017315
chr5.1 exon 59490191 59490709 59490191 ID=MS.gene017315.t1.exon1;Parent=MS.gene017315.t1
chr5.1 CDS 59490191 59490709 59490191 ID=cds.MS.gene017315.t1;Parent=MS.gene017315.t1
chr5.1 exon 59490929 59491174 59490929 ID=MS.gene017315.t1.exon2;Parent=MS.gene017315.t1
chr5.1 CDS 59490929 59491174 59490929 ID=cds.MS.gene017315.t1;Parent=MS.gene017315.t1
Gene Sequence

>MS.gene017315

ATGTCATGTCCAAATGTGAACTATGGTTGCAGGGAGAAAATAAGTTACACTAGAAAGAGGATGCATGAAGAACAATGCATCCGTAAGCCATGTTACTGTCCCTTTTCAGGTTGTGACTTTGTTCAATCATCAAACATGTTTTCTGTGCATTTCAGCGATAAACACGGGGATTATCAAATCAAATTTTCTTATGGGAAATCCTTCATTGTCTCCTTGAAGTCTAATGATGAAACCATTGTTCTTCAAGAGGAAAATTATGGCAAACTCTTTACTCTCAATAATAATACTACTCGTTTAGGAAATGCAGTCAATATTTGCTGCTTTGGTCCAGACACACCCGAGTCCGAGTATAGTTATGATATATTGTCTACGTCTCAGTTATGCAAACTGAAATTACAATCTATTGCAAAGAATGTCCAACAGGTTACTTTAGCAAATCTTTCATCAGAGTTTCTTGTGATTCCATTTGGTTCTTCTGAACCTCTCAAGCTAGAAATTTGCATTCACGTAACCTCCACGGTATTTACTATATCCTATTCTTTGTTTTGGCTATTTTCCTATTGAAATCTTGGTATTTTATTTTATGTTTTGAATTTATACTCTAGCAAATTATCTCTAATTTATCGGTTTTTCAAACGCCAAAAAAAGGTTGTTTGTGTTTTCTATTTTTTGATAAATTCTTGAAGTATCATAAGTCTCAAATTTTCTTTTATTGATTTAATGGCAATTGTGGTGCAGATCCAAATCTTTGTACAGGGCCTAGATGGAAAGTATATGACCCTTAGAGTTAAGAAATCAGACAAGTTAGACAAATTGAAAGAGATGATTCATGACAAGACTAAGATCCCAGTGGCCGCCCAACGTCTGATCTTTGGCAGTAGATACCTGGATGGAAACCTGACCCTTTTCGACTACAACATTTATAACGAATCATTCCTCTCACTCTACGGAAGACGATTGCCGATTAGTACATCCAACATTTGA

Protein sequence

>MS.gene017315.t1

MSCPNVNYGCREKISYTRKRMHEEQCIRKPCYCPFSGCDFVQSSNMFSVHFSDKHGDYQIKFSYGKSFIVSLKSNDETIVLQEENYGKLFTLNNNTTRLGNAVNICCFGPDTPESEYSYDILSTSQLCKLKLQSIAKNVQQVTLANLSSEFLVIPFGSSEPLKLEICIHVTSTIQIFVQGLDGKYMTLRVKKSDKLDKLKEMIHDKTKIPVAAQRLIFGSRYLDGNLTLFDYNIYNESFLSLYGRRLPISTSNI