AlfalfaGEDB | MS.gene017337

M. sativa cultivar XinJiangDaYe / MS.gene017337

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00240.26

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017337.t1	AES99122.2	62.8	199	66	3	1	191	68	266	4.50E-54	221.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017337.t1	P49633	49.2	65	33	0	127	191	8	72	1.9e-08	60.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017337.t1	G7KFT5	62.8	199	66	3	1	191	68	266	3.3e-54	221.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene92435	MS.gene017337	PPI
MS.gene064975	MS.gene017337	PPI
MS.gene009564	MS.gene017337	PPI
MS.gene009570	MS.gene017337	PPI
MS.gene017337	MS.gene017300	PPI
MS.gene063586	MS.gene017337	PPI
MS.gene73973	MS.gene017337	PPI
MS.gene017337	MS.gene74054	PPI
MS.gene009543	MS.gene017337	PPI
MS.gene062462	MS.gene017337	PPI
MS.gene063610	MS.gene017337	PPI
MS.gene017308	MS.gene017337	PPI
MS.gene012651	MS.gene017337	PPI
MS.gene92430	MS.gene017337	PPI
MS.gene044173	MS.gene017337	PPI
MS.gene73975	MS.gene017337	PPI
MS.gene017337	MS.gene016802	PPI
MS.gene53618	MS.gene017337	PPI
MS.gene017337	MS.gene063596	PPI
MS.gene017337	MS.gene26202	PPI
MS.gene063587	MS.gene017337	PPI
MS.gene017337	MS.gene032536	PPI
MS.gene017337	MS.gene025074	PPI
MS.gene017315	MS.gene017337	PPI
MS.gene74055	MS.gene017337	PPI
MS.gene017337	MS.gene064974	PPI
MS.gene063596	MS.gene017337	PPI
MS.gene009561	MS.gene017337	PPI
MS.gene009547	MS.gene017337	PPI
MS.gene017337	MS.gene062459	PPI
MS.gene063589	MS.gene017337	PPI
MS.gene53616	MS.gene017337	PPI
MS.gene64288	MS.gene017337	PPI
MS.gene73977	MS.gene017337	PPI
MS.gene39862	MS.gene017337	PPI
MS.gene81807	MS.gene017337	PPI
MS.gene017316	MS.gene017337	PPI
MS.gene017309	MS.gene017337	PPI
MS.gene063576	MS.gene017337	PPI
MS.gene017337	MS.gene009573	PPI
MS.gene023735	MS.gene017337	PPI
MS.gene062461	MS.gene017337	PPI
MS.gene64287	MS.gene017337	PPI
MS.gene37878	MS.gene017337	PPI
MS.gene68940	MS.gene017337	PPI
MS.gene009559	MS.gene017337	PPI
MS.gene032536	MS.gene017337	PPI
MS.gene025074	MS.gene017337	PPI
MS.gene053692	MS.gene017337	PPI
MS.gene044969	MS.gene017337	PPI
MS.gene017337	MS.gene063586	PPI
MS.gene92432	MS.gene017337	PPI
MS.gene92433	MS.gene017337	PPI
MS.gene025072	MS.gene017337	PPI
MS.gene26198	MS.gene017337	PPI
MS.gene009576	MS.gene017337	PPI
MS.gene009591	MS.gene017337	PPI
MS.gene21254	MS.gene017337	PPI
MS.gene017337	MS.gene063587	PPI
MS.gene017337	MS.gene063610	PPI
MS.gene26202	MS.gene017337	PPI
MS.gene017321	MS.gene017337	PPI
MS.gene037087	MS.gene017337	PPI
MS.gene70750	MS.gene017337	PPI
MS.gene017337	MS.gene94985	PPI
MS.gene017318	MS.gene017337	PPI
MS.gene26189	MS.gene017337	PPI
MS.gene017314	MS.gene017337	PPI
MS.gene017337	MS.gene94984	PPI
MS.gene016802	MS.gene017337	PPI
MS.gene26190	MS.gene017337	PPI
MS.gene053691	MS.gene017337	PPI
MS.gene017337	MS.gene92427	PPI
MS.gene063584	MS.gene017337	PPI
MS.gene009562	MS.gene017337	PPI
MS.gene017337	MS.gene009564	PPI
MS.gene063581	MS.gene017337	PPI
MS.gene41691	MS.gene017337	PPI
MS.gene52735	MS.gene017337	PPI
MS.gene044971	MS.gene017337	PPI
MS.gene042174	MS.gene017337	PPI
MS.gene72920	MS.gene017337	PPI
MS.gene032535	MS.gene017337	PPI
MS.gene61945	MS.gene017337	PPI
MS.gene25827	MS.gene017337	PPI
MS.gene063598	MS.gene017337	PPI
MS.gene81557	MS.gene017337	PPI
MS.gene017337	MS.gene53619	PPI
MS.gene063583	MS.gene017337	PPI
MS.gene009566	MS.gene017337	PPI
MS.gene92429	MS.gene017337	PPI
MS.gene009577	MS.gene017337	PPI
MS.gene017337	MS.gene023735	PPI
MS.gene010031	MS.gene017337	PPI
MS.gene009573	MS.gene017337	PPI
MS.gene53617	MS.gene017337	PPI
MS.gene94985	MS.gene017337	PPI
MS.gene26186	MS.gene017337	PPI
MS.gene017324	MS.gene017337	PPI
MS.gene017337	MS.gene21254	PPI
MS.gene009560	MS.gene017337	PPI
MS.gene26197	MS.gene017337	PPI
MS.gene063599	MS.gene017337	PPI
MS.gene26191	MS.gene017337	PPI
MS.gene04692	MS.gene017337	PPI
MS.gene81818	MS.gene017337	PPI
MS.gene063603	MS.gene017337	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017337.t1	MTR_5g076810	63.500	200	63	4	1	191	68	266	1.43e-77	233
MS.gene017337.t1	MTR_1g046650	61.111	198	70	2	1	191	45	242	6.74e-75	226
MS.gene017337.t1	MTR_1g046650	61.111	198	70	2	1	191	114	311	2.75e-74	226
MS.gene017337.t1	MTR_1g046650	61.111	198	70	2	1	191	114	311	3.38e-74	226
MS.gene017337.t1	MTR_5g067400	61.111	198	70	2	1	191	115	312	5.80e-74	226
MS.gene017337.t1	MTR_1g046650	61.111	198	70	2	1	191	145	342	1.05e-73	226
MS.gene017337.t1	MTR_1g046640	60.500	200	72	2	1	193	114	313	2.69e-73	224
MS.gene017337.t1	MTR_5g076370	58.706	201	73	3	1	191	138	338	5.98e-71	219
MS.gene017337.t1	MTR_7g094390	60.099	203	72	4	1	195	276	477	2.44e-68	216
MS.gene017337.t1	MTR_7g024290	58.621	203	76	3	1	195	115	317	9.45e-67	207
MS.gene017337.t1	MTR_5g076720	54.726	201	81	3	5	195	190	390	1.10e-60	194
MS.gene017337.t1	MTR_2g038430	51.628	215	84	3	1	195	129	343	1.87e-60	192
MS.gene017337.t1	MTR_5g076820	63.030	165	50	4	1	154	122	286	2.12e-59	187
MS.gene017337.t1	MTR_5g076520	54.950	202	80	4	1	191	115	316	4.81e-59	187
MS.gene017337.t1	MTR_5g076660	54.726	201	81	3	1	191	137	337	2.20e-58	186
MS.gene017337.t1	MTR_2g038420	52.174	207	87	4	1	195	129	335	1.86e-57	184
MS.gene017337.t1	MTR_5g061290	50.242	207	91	3	1	195	121	327	3.89e-57	183
MS.gene017337.t1	MTR_5g076505	51.707	205	89	3	1	195	111	315	4.29e-56	180
MS.gene017337.t1	MTR_5g077020	65.625	128	42	2	4	129	86	213	5.38e-48	156
MS.gene017337.t1	MTR_5g076540	60.526	114	44	1	1	113	115	228	3.30e-35	124
MS.gene017337.t1	MTR_4g058025	71.795	78	22	0	1	78	49	126	4.95e-32	114
MS.gene017337.t1	MTR_5g076760	56.140	57	25	0	130	186	5	61	4.64e-15	67.8
MS.gene017337.t1	MTR_4g094468	36.792	106	65	2	5	109	205	309	2.92e-13	67.4
MS.gene017337.t1	MTR_7g105080	49.231	65	33	0	127	191	8	72	1.87e-12	62.0
MS.gene017337.t1	MTR_3g092130	49.231	65	33	0	127	191	8	72	1.87e-12	62.0
MS.gene017337.t1	MTR_1g059690	49.231	65	33	0	127	191	8	72	1.87e-12	62.0
MS.gene017337.t1	MTR_5g076780	46.154	65	34	1	131	195	1	64	2.63e-12	60.1
MS.gene017337.t1	MTR_5g061310	44.928	69	38	0	127	195	9	77	4.20e-12	59.7
MS.gene017337.t1	MTR_3g092130	49.231	65	33	0	127	191	8	72	4.75e-12	61.2
MS.gene017337.t1	MTR_8g088060	49.231	65	33	0	127	191	8	72	7.71e-12	60.8
MS.gene017337.t1	MTR_5g033960	49.231	65	33	0	127	191	8	72	8.04e-12	60.8
MS.gene017337.t1	MTR_4g009980	46.479	71	38	0	125	195	1	71	1.17e-11	58.5
MS.gene017337.t1	MTR_5g076340	41.379	87	49	2	110	195	1	86	1.68e-11	58.5
MS.gene017337.t1	MTR_5g092700	49.231	65	33	0	127	191	8	72	2.38e-11	59.7
MS.gene017337.t1	MTR_4g073580	49.231	65	33	0	127	191	8	72	2.38e-11	59.7
MS.gene017337.t1	MTR_4g073580	49.231	65	33	0	127	191	8	72	3.06e-11	60.1
MS.gene017337.t1	MTR_4g088485	49.231	65	33	0	127	191	8	72	5.20e-11	59.7
MS.gene017337.t1	MTR_4g088485	49.231	65	33	0	127	191	145	209	5.20e-11	59.7
MS.gene017337.t1	MTR_7g116360	49.231	65	33	0	127	191	8	72	5.59e-11	60.1
MS.gene017337.t1	MTR_7g116360	49.231	65	33	0	127	191	84	148	5.59e-11	60.1
MS.gene017337.t1	MTR_7g116360	49.231	65	33	0	127	191	160	224	5.59e-11	60.1
MS.gene017337.t1	MTR_7g116360	49.231	65	33	0	127	191	56	120	6.30e-11	60.5
MS.gene017337.t1	MTR_7g116360	49.231	65	33	0	127	191	132	196	6.30e-11	60.5
MS.gene017337.t1	MTR_7g116360	49.231	65	33	0	127	191	208	272	6.30e-11	60.5
MS.gene017337.t1	MTR_4g091580	49.231	65	33	0	127	191	312	376	6.52e-11	60.8
MS.gene017337.t1	MTR_1g066390	49.231	65	33	0	127	191	8	72	6.76e-11	59.7
MS.gene017337.t1	MTR_1g066390	49.231	65	33	0	127	191	84	148	6.76e-11	59.7
MS.gene017337.t1	MTR_1g066390	49.231	65	33	0	127	191	160	224	6.76e-11	59.7
MS.gene017337.t1	MTR_8g018230	49.231	65	33	0	127	191	8	72	8.47e-11	60.1
MS.gene017337.t1	MTR_8g018230	49.231	65	33	0	127	191	84	148	8.47e-11	60.1
MS.gene017337.t1	MTR_8g018230	49.231	65	33	0	127	191	160	224	8.47e-11	60.1
MS.gene017337.t1	MTR_6g061930	49.231	65	33	0	127	191	8	72	8.95e-11	60.1
MS.gene017337.t1	MTR_6g061930	49.231	65	33	0	127	191	84	148	8.95e-11	60.1
MS.gene017337.t1	MTR_6g061930	49.231	65	33	0	127	191	221	285	8.95e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene017337.t1	AT3G52590	49.231	65	33	127	191	8	72	2.46e-12	61.6
MS.gene017337.t1	AT2G36170	49.231	65	33	127	191	8	72	2.46e-12	61.6
MS.gene017337.t1	AT1G23410	49.231	65	33	127	191	8	72	9.03e-12	60.8
MS.gene017337.t1	AT2G47110	49.231	65	33	127	191	8	72	1.38e-11	60.5
MS.gene017337.t1	AT2G47110	49.231	65	33	127	191	8	72	1.38e-11	60.5
MS.gene017337.t1	AT3G62250	49.231	65	33	127	191	8	72	1.64e-11	60.1
MS.gene017337.t1	AT4G05050	49.231	65	33	127	191	8	72	1.89e-11	60.1
MS.gene017337.t1	AT4G05050	49.231	65	33	127	191	84	148	1.89e-11	60.1
MS.gene017337.t1	AT4G05320	49.231	65	33	127	191	8	72	1.89e-11	60.1
MS.gene017337.t1	AT4G05320	49.231	65	33	127	191	84	148	1.89e-11	60.1
MS.gene017337.t1	AT2G35635	49.231	65	33	127	191	8	72	3.09e-11	59.3
MS.gene017337.t1	AT1G31340	49.231	65	33	127	191	8	72	3.41e-11	59.3
MS.gene017337.t1	AT4G05050	49.231	65	33	127	191	8	72	5.85e-11	60.1
MS.gene017337.t1	AT4G05050	49.231	65	33	127	191	84	148	5.85e-11	60.1
MS.gene017337.t1	AT4G05050	49.231	65	33	127	191	160	224	5.85e-11	60.1
MS.gene017337.t1	AT4G05050	49.231	65	33	127	191	8	72	5.85e-11	60.1
MS.gene017337.t1	AT4G05050	49.231	65	33	127	191	84	148	5.85e-11	60.1
MS.gene017337.t1	AT4G05050	49.231	65	33	127	191	160	224	5.85e-11	60.1
MS.gene017337.t1	AT4G05050	49.231	65	33	127	191	8	72	5.85e-11	60.1
MS.gene017337.t1	AT4G05050	49.231	65	33	127	191	84	148	5.85e-11	60.1
MS.gene017337.t1	AT4G05050	49.231	65	33	127	191	160	224	5.85e-11	60.1
MS.gene017337.t1	AT4G02890	49.231	65	33	127	191	8	72	5.85e-11	60.1
MS.gene017337.t1	AT4G02890	49.231	65	33	127	191	84	148	5.85e-11	60.1
MS.gene017337.t1	AT4G02890	49.231	65	33	127	191	160	224	5.85e-11	60.1
MS.gene017337.t1	AT4G02890	49.231	65	33	127	191	8	72	5.85e-11	60.1
MS.gene017337.t1	AT4G02890	49.231	65	33	127	191	84	148	5.85e-11	60.1
MS.gene017337.t1	AT4G02890	49.231	65	33	127	191	160	224	5.85e-11	60.1
MS.gene017337.t1	AT1G55060	47.692	65	34	127	191	8	72	8.47e-11	59.7
MS.gene017337.t1	AT1G65350	49.231	65	33	127	191	8	72	8.48e-11	60.5
MS.gene017337.t1	AT5G03240	49.231	65	33	127	191	8	72	9.75e-11	60.1
MS.gene017337.t1	AT5G03240	49.231	65	33	127	191	84	148	9.75e-11	60.1
MS.gene017337.t1	AT5G03240	49.231	65	33	127	191	160	224	9.75e-11	60.1
MS.gene017337.t1	AT5G03240	49.231	65	33	127	191	236	300	9.75e-11	60.1
MS.gene017337.t1	AT5G03240	49.231	65	33	127	191	8	72	9.75e-11	60.1
MS.gene017337.t1	AT5G03240	49.231	65	33	127	191	84	148	9.75e-11	60.1
MS.gene017337.t1	AT5G03240	49.231	65	33	127	191	160	224	9.75e-11	60.1
MS.gene017337.t1	AT5G03240	49.231	65	33	127	191	236	300	9.75e-11	60.1
MS.gene017337.t1	AT5G03240	49.231	65	33	127	191	8	72	9.75e-11	60.1
MS.gene017337.t1	AT5G03240	49.231	65	33	127	191	84	148	9.75e-11	60.1
MS.gene017337.t1	AT5G03240	49.231	65	33	127	191	160	224	9.75e-11	60.1
MS.gene017337.t1	AT5G03240	49.231	65	33	127	191	236	300	9.75e-11	60.1
MS.gene017337.t1	AT5G20620	49.231	65	33	127	191	8	72	9.75e-11	60.1
MS.gene017337.t1	AT5G20620	49.231	65	33	127	191	84	148	9.75e-11	60.1
MS.gene017337.t1	AT5G20620	49.231	65	33	127	191	160	224	9.75e-11	60.1
MS.gene017337.t1	AT5G20620	49.231	65	33	127	191	236	300	9.75e-11	60.1

Find 39 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTACTTCATCCGCCAAATT+AGG	0.144510	5.1:+59836208	MS.gene017337:CDS
GAGAAGATGCTTGACATAAA+TGG	0.242876	5.1:+59836087	MS.gene017337:CDS
TAATTTCACTTTGTCTCTCT+TGG	0.272762	5.1:-59834626	None:intergenic
TGAACATCTAGTCCCTAATT+TGG	0.338550	5.1:-59836221	None:intergenic
AATAATAGTACTATGTTGTT+AGG	0.345128	5.1:+59834529	MS.gene017337:CDS
CTACTTCATCCGCCAAATTA+GGG	0.346857	5.1:+59836209	MS.gene017337:CDS
CAGGACCAAGTTCTGTTCTA+TGG	0.381227	5.1:+59836120	MS.gene017337:CDS
CTTTGTGTGTATGGCTGAAA+TGG	0.393045	5.1:-59834399	None:intergenic
ATTCTCTTCGATGTCATAAT+CGG	0.406455	5.1:-59836175	None:intergenic
CTAGAGAATCTTTGTGTGTA+TGG	0.412298	5.1:-59834408	None:intergenic
AGAAGATGCTTGACATAAAT+GGG	0.418316	5.1:+59836088	MS.gene017337:CDS
AAAGGTTCAGAAGAACCAAT+TGG	0.436776	5.1:-59834712	None:intergenic
AATTTCATCATTAGACTTCA+AGG	0.441182	5.1:-59834464	None:intergenic
ATGCAAATTTCTAGCTTGAA+AGG	0.452974	5.1:-59834730	None:intergenic
GAGTTCCTTGTGATTCCAAT+TGG	0.458867	5.1:+59834697	MS.gene017337:CDS
CACCGCCATAGAACAGAACT+TGG	0.479777	5.1:-59836125	None:intergenic
TGAAATTGTTGTTCTTCAAG+AGG	0.506806	5.1:+59834480	MS.gene017337:CDS
AGACTTCAAGGGCACAATGA+AGG	0.538616	5.1:-59834452	None:intergenic
AACAGAACTTGGTCCTGCAC+TGG	0.544162	5.1:-59836114	None:intergenic
AAAGAGTTGCAGTGGCCTGT+TGG	0.547802	5.1:-59834669	None:intergenic
CATAATCGGCAAGGGTACTC+AGG	0.548605	5.1:-59836161	None:intergenic
ATCATAAATCTTCCGAGTCA+AGG	0.559673	5.1:+59834578	MS.gene017337:CDS
ACATCTAGTCCCTAATTTGG+CGG	0.569462	5.1:-59836218	None:intergenic
CTTCGATGTCATAATCGGCA+AGG	0.570785	5.1:-59836170	None:intergenic
ATTTCATCATTAGACTTCAA+GGG	0.575202	5.1:-59834463	None:intergenic
AATTGGAATCACAAGGAACT+CGG	0.585909	5.1:-59834695	None:intergenic
CTCGGATAAAAGAGTTGCAG+TGG	0.599132	5.1:-59834677	None:intergenic
TTCGATGTCATAATCGGCAA+GGG	0.601175	5.1:-59836169	None:intergenic
AGACACAATAGCCGATGTGA+AGG	0.610749	5.1:+59836065	MS.gene017337:CDS
CATAAATGGGATACCAGTGC+AGG	0.626239	5.1:+59836101	MS.gene017337:CDS
ATCATAACTATACCTTGACT+CGG	0.636278	5.1:-59834590	None:intergenic
TCTGAACTCTCAACCACGAG+AGG	0.637943	5.1:-59836045	None:intergenic
AAGAACCAATTGGAATCACA+AGG	0.662253	5.1:-59834702	None:intergenic
GACCAAGTTCTGTTCTATGG+CGG	0.670364	5.1:+59836123	MS.gene017337:CDS
TTTGGCGGATGAAGTAGACG+AGG	0.684297	5.1:-59836203	None:intergenic
AAGCATCTTCTCCTTCACAT+CGG	0.693924	5.1:-59836076	None:intergenic
TTGGCGGATGAAGTAGACGA+GGG	0.696084	5.1:-59836202	None:intergenic
TGGAGAAATGATACCTCTCG+TGG	0.714577	5.1:+59836032	MS.gene017337:CDS
GAAGATATGAAGTACCATGG+GGG	0.763126	5.1:-59834755	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GAAATAAATAAAAACAAAAT+TGG	-	chr5.1:59835518-59835537	None:intergenic	10.0%
!!!	AATTTTTATGAATAAAAAAG+AGG	-	chr5.1:59835586-59835605	None:intergenic	10.0%
!!	CTTTAAACATGTTATAATTA+TGG	+	chr5.1:59835749-59835768	MS.gene017337:intron	15.0%
!!	GAAAATAACAAAACTTTAAT+TGG	-	chr5.1:59834800-59834819	None:intergenic	15.0%
!!	GGTGTAAAAAATAATAAAAA+TGG	-	chr5.1:59835545-59835564	None:intergenic	15.0%
!!!	ATTATTTTTTACACCATTTT+TGG	+	chr5.1:59835550-59835569	MS.gene017337:intron	15.0%
!!!	TTGTTAGTTTTTTCTATTTT+TGG	+	chr5.1:59834891-59834910	MS.gene017337:intron	15.0%
!!	AATAATAGTACTATGTTGTT+AGG	+	chr5.1:59834529-59834548	MS.gene017337:CDS	20.0%
!!	ACATATAGTTAAAAAACCAA+GGG	-	chr5.1:59835438-59835457	None:intergenic	20.0%
!!	CTATATGTAGGAATTAAATT+TGG	+	chr5.1:59835450-59835469	MS.gene017337:intron	20.0%
!!	TACATATAGTTAAAAAACCA+AGG	-	chr5.1:59835439-59835458	None:intergenic	20.0%
!!!	AACTAAAATACCATTTTGAT+TGG	-	chr5.1:59835230-59835249	None:intergenic	20.0%
!!!	GTTTTCTTTTATTGATTTGA+TGG	+	chr5.1:59835969-59835988	MS.gene017337:intron	20.0%
!!!	TTGGTTTTTTAACTATATGT+AGG	+	chr5.1:59835438-59835457	MS.gene017337:intron	20.0%
!	AATTTCATCATTAGACTTCA+AGG	-	chr5.1:59834467-59834486	None:intergenic	25.0%
!	ATTTCATCATTAGACTTCAA+GGG	-	chr5.1:59834466-59834485	None:intergenic	25.0%
!	TAAAAGAAAACTTGATACCA+AGG	-	chr5.1:59835960-59835979	None:intergenic	25.0%
!!	ATTTTTGTAAAGGATATGAC+TGG	+	chr5.1:59836012-59836031	MS.gene017337:intron	25.0%
!!!	GTATTTTAGTTTGTGAGATT+TGG	+	chr5.1:59835239-59835258	MS.gene017337:intron	25.0%
!!!	TCAAGCAAGGTTTTAAAAAA+CGG	+	chr5.1:59834936-59834955	MS.gene017337:intron	25.0%
!!!	TTTTGACTGAATTTTCAAGT+TGG	-	chr5.1:59835132-59835151	None:intergenic	25.0%
	AAAACTAACAACCTTAGCTT+TGG	-	chr5.1:59834882-59834901	None:intergenic	30.0%
	AGAAGATGCTTGACATAAAT+GGG	+	chr5.1:59836088-59836107	MS.gene017337:CDS	30.0%
	ATCATAACTATACCTTGACT+CGG	-	chr5.1:59834593-59834612	None:intergenic	30.0%
	ATTCTCTTCGATGTCATAAT+CGG	-	chr5.1:59836178-59836197	None:intergenic	30.0%
	ATTTACAAATGCCAAAGCTA+AGG	+	chr5.1:59834868-59834887	MS.gene017337:intron	30.0%
	ATTTCTTTCTCAGCGTTAAA+AGG	-	chr5.1:59835024-59835043	None:intergenic	30.0%
	TAATTTCACTTTGTCTCTCT+TGG	-	chr5.1:59834629-59834648	None:intergenic	30.0%
	TTTCTTTCTCAGCGTTAAAA+GGG	-	chr5.1:59835023-59835042	None:intergenic	30.0%
!	AAAGAAGATATGAAGTACCA+TGG	-	chr5.1:59834761-59834780	None:intergenic	30.0%
!	AAGAAGATATGAAGTACCAT+GGG	-	chr5.1:59834760-59834779	None:intergenic	30.0%
!	GCAGATGCAAATTTTTGTAA+AGG	+	chr5.1:59836002-59836021	MS.gene017337:intron	30.0%
!	TCTCTAGTCGAATTTTCTTA+TGG	+	chr5.1:59834424-59834443	MS.gene017337:CDS	30.0%
!	TGAAATTGTTGTTCTTCAAG+AGG	+	chr5.1:59834480-59834499	MS.gene017337:CDS	30.0%
!!	ATGCAAATTTCTAGCTTGAA+AGG	-	chr5.1:59834733-59834752	None:intergenic	30.0%
!!	GATACCAAGGTTCTAAAAAA+CGG	-	chr5.1:59835947-59835966	None:intergenic	30.0%
!!!	CAAGCAAGGTTTTAAAAAAC+GGG	+	chr5.1:59834937-59834956	MS.gene017337:intron	30.0%
!!!	GGTTTTAGAAAATTCAACAG+TGG	+	chr5.1:59835273-59835292	MS.gene017337:intron	30.0%
	AAAGGTTCAGAAGAACCAAT+TGG	-	chr5.1:59834715-59834734	None:intergenic	35.0%
	AAGAACCAATTGGAATCACA+AGG	-	chr5.1:59834705-59834724	None:intergenic	35.0%
	AATTGGAATCACAAGGAACT+CGG	-	chr5.1:59834698-59834717	None:intergenic	35.0%
	ATCATAAATCTTCCGAGTCA+AGG	+	chr5.1:59834578-59834597	MS.gene017337:CDS	35.0%
	CTAGAGAATCTTTGTGTGTA+TGG	-	chr5.1:59834411-59834430	None:intergenic	35.0%
	GAGAAGATGCTTGACATAAA+TGG	+	chr5.1:59836087-59836106	MS.gene017337:CDS	35.0%
	GCGTGAAAATCCAATCAAAA+TGG	+	chr5.1:59835217-59835236	MS.gene017337:intron	35.0%
	TGAAATAGCAGTATCAAGCA+AGG	+	chr5.1:59834923-59834942	MS.gene017337:intron	35.0%
	TTCTTTCTCAGCGTTAAAAG+GGG	-	chr5.1:59835022-59835041	None:intergenic	35.0%
!	AAAAACAAAATTGGCTCAGC+TGG	-	chr5.1:59835509-59835528	None:intergenic	35.0%
!	AAGGGTGCAGATATGAAAAA+GGG	-	chr5.1:59835420-59835439	None:intergenic	35.0%
!	AGAAGATATGAAGTACCATG+GGG	-	chr5.1:59834759-59834778	None:intergenic	35.0%
!	AGGCATTAAAGTGCCAAAAA+TGG	-	chr5.1:59835566-59835585	None:intergenic	35.0%
!!	TGAGATTTGGTGAACATTTG+AGG	+	chr5.1:59835252-59835271	MS.gene017337:intron	35.0%
	AAAAGGGGCAAAAACGGTAA+CGG	-	chr5.1:59835007-59835026	None:intergenic	40.0%
	AAGCATCTTCTCCTTCACAT+CGG	-	chr5.1:59836079-59836098	None:intergenic	40.0%
	ACGTGAAGAAAGGAAGAAGA+AGG	+	chr5.1:59835319-59835338	MS.gene017337:intron	40.0%
	AGAAATTTGCATAACCCCCA+TGG	+	chr5.1:59834741-59834760	MS.gene017337:CDS	40.0%
	AGCATATAGGACAAAACTGC+AGG	-	chr5.1:59835383-59835402	None:intergenic	40.0%
	AGCGTTAAAAGGGGCAAAAA+CGG	-	chr5.1:59835013-59835032	None:intergenic	40.0%
	AGGGTGCAGATATGAAAAAG+GGG	-	chr5.1:59835419-59835438	None:intergenic	40.0%
	ATATAGGACAAAACTGCAGG+TGG	-	chr5.1:59835380-59835399	None:intergenic	40.0%
	CAAAAACGGCCGTTACAAAT+CGG	+	chr5.1:59834969-59834988	MS.gene017337:intron	40.0%
	CTACTTCATCCGCCAAATTA+GGG	+	chr5.1:59836209-59836228	MS.gene017337:CDS	40.0%
	CTTTGTGTGTATGGCTGAAA+TGG	-	chr5.1:59834402-59834421	None:intergenic	40.0%
	GAGTTCCTTGTGATTCCAAT+TGG	+	chr5.1:59834697-59834716	MS.gene017337:CDS	40.0%
	GATACAAATAACGGTCTTCG+CGG	-	chr5.1:59835864-59835883	None:intergenic	40.0%
	GTGCATAAGCAACAGCATAT+AGG	-	chr5.1:59835396-59835415	None:intergenic	40.0%
	GTTGTTCTTCACGTGAAGAA+AGG	+	chr5.1:59835309-59835328	MS.gene017337:intron	40.0%
	TATAGGACAAAACTGCAGGT+GGG	-	chr5.1:59835379-59835398	None:intergenic	40.0%
	TCTACTTCATCCGCCAAATT+AGG	+	chr5.1:59836208-59836227	MS.gene017337:CDS	40.0%
	TTCGATGTCATAATCGGCAA+GGG	-	chr5.1:59836172-59836191	None:intergenic	40.0%
!	CAAGGGTGCAGATATGAAAA+AGG	-	chr5.1:59835421-59835440	None:intergenic	40.0%
!	GAAGATATGAAGTACCATGG+GGG	-	chr5.1:59834758-59834777	None:intergenic	40.0%
!!	AAGGTTCTAAAAAACGGTCG+CGG	-	chr5.1:59835941-59835960	None:intergenic	40.0%
!!	CTTTTTCATATCTGCACCCT+TGG	+	chr5.1:59835419-59835438	MS.gene017337:intron	40.0%
!!	TTTCAAGTTGGAGTCCGTAA+CGG	-	chr5.1:59835120-59835139	None:intergenic	40.0%
!!!	ATTTGTAACGGCCGTTTTTG+CGG	-	chr5.1:59834969-59834988	None:intergenic	40.0%
	AGACACAATAGCCGATGTGA+AGG	+	chr5.1:59836065-59836084	MS.gene017337:CDS	45.0%
	ATAGGACAAAACTGCAGGTG+GGG	-	chr5.1:59835378-59835397	None:intergenic	45.0%
	ATATCGCCGTTACAGCGTTA+CGG	+	chr5.1:59835052-59835071	MS.gene017337:intron	45.0%
	CAGGACCAAGTTCTGTTCTA+TGG	+	chr5.1:59836120-59836139	MS.gene017337:CDS	45.0%
	CATAAATGGGATACCAGTGC+AGG	+	chr5.1:59836101-59836120	MS.gene017337:CDS	45.0%
	CGTTAAGGTTGTCGCGATTT+CGG	-	chr5.1:59835903-59835922	None:intergenic	45.0%
	CTCGGATAAAAGAGTTGCAG+TGG	-	chr5.1:59834680-59834699	None:intergenic	45.0%
	CTTCGATGTCATAATCGGCA+AGG	-	chr5.1:59836173-59836192	None:intergenic	45.0%
	GACCAAGTTCTGTTCTATGG+CGG	+	chr5.1:59836123-59836142	MS.gene017337:CDS	45.0%
	GGACGCTGCGATACAAATAA+CGG	-	chr5.1:59835873-59835892	None:intergenic	45.0%
	GGGTGCAGATATGAAAAAGG+GGG	-	chr5.1:59835418-59835437	None:intergenic	45.0%
	TGGACCACTTGATGCATCAA+GGG	-	chr5.1:59835478-59835497	None:intergenic	45.0%
	TGGAGAAATGATACCTCTCG+TGG	+	chr5.1:59836032-59836051	MS.gene017337:CDS	45.0%
	TGGCTCAGCTGGAATAAATC+TGG	-	chr5.1:59835498-59835517	None:intergenic	45.0%
!	AGACTTCAAGGGCACAATGA+AGG	-	chr5.1:59834455-59834474	None:intergenic	45.0%
!	TTTTGCGAAGTACGTCCAAC+AGG	+	chr5.1:59834654-59834673	MS.gene017337:CDS	45.0%
!!	CTGCCGATACCGATTTGTAA+CGG	-	chr5.1:59834981-59835000	None:intergenic	45.0%
!!	TTACAAATCGGTATCGGCAG+CGG	+	chr5.1:59834981-59835000	MS.gene017337:intron	45.0%
!!!	GCGACCGTTTTTTAGAACCT+TGG	+	chr5.1:59835940-59835959	MS.gene017337:intron	45.0%
	AAAGAGTTGCAGTGGCCTGT+TGG	-	chr5.1:59834672-59834691	None:intergenic	50.0%
	AACAGAACTTGGTCCTGCAC+TGG	-	chr5.1:59836117-59836136	None:intergenic	50.0%
	ACGGGACGTTACCGCAAAAA+CGG	+	chr5.1:59834955-59834974	MS.gene017337:intron	50.0%
	CACCGCCATAGAACAGAACT+TGG	-	chr5.1:59836128-59836147	None:intergenic	50.0%
	CGGCCGTTACAAATCGGTAT+CGG	+	chr5.1:59834975-59834994	MS.gene017337:intron	50.0%
	CTGGACCACTTGATGCATCA+AGG	-	chr5.1:59835479-59835498	None:intergenic	50.0%
	GGACCACTTGATGCATCAAG+GGG	-	chr5.1:59835477-59835496	None:intergenic	50.0%
	TCTGAACTCTCAACCACGAG+AGG	-	chr5.1:59836048-59836067	None:intergenic	50.0%
	TGTCGCGATTTCGGCTGTAA+CGG	-	chr5.1:59835894-59835913	None:intergenic	50.0%
!	TTGGCGGATGAAGTAGACGA+GGG	-	chr5.1:59836205-59836224	None:intergenic	50.0%
!	TTTGGCGGATGAAGTAGACG+AGG	-	chr5.1:59836206-59836225	None:intergenic	50.0%
!!	CATAATCGGCAAGGGTACTC+AGG	-	chr5.1:59836164-59836183	None:intergenic	50.0%
	ACGACCGTGAAACGCCGTTA+CGG	+	chr5.1:59835084-59835103	MS.gene017337:intron	55.0%
	ACGGCGTTTCACGGTCGTAA+CGG	-	chr5.1:59835082-59835101	None:intergenic	55.0%
	CCTTCCTTCCTTGTTGACCG+CGG	+	chr5.1:59835351-59835370	MS.gene017337:intron	55.0%
	CGGTCAACAAGGAAGGAAGG+AGG	-	chr5.1:59835351-59835370	None:intergenic	55.0%
	CTTCCTTCCTTGTTGACCGC+GGG	+	chr5.1:59835352-59835371	MS.gene017337:intron	55.0%
	GGACCCCTTGATGCATCAAG+TGG	+	chr5.1:59835471-59835490	MS.gene017337:intron	55.0%
	GGCGTTCCGTAACGCTGTAA+CGG	-	chr5.1:59835061-59835080	None:intergenic	55.0%
	CCGCGGTCAACAAGGAAGGA+AGG	-	chr5.1:59835354-59835373	None:intergenic	60.0%
	GAGTCCGTAACGGCGTTTCG+CGG	-	chr5.1:59835110-59835129	None:intergenic	60.0%
	AAAACTGCAGGTGGGGCCCG+CGG	-	chr5.1:59835371-59835390	None:intergenic	65.0%
	ACGGCCGCGAAACGCCGTTA+CGG	+	chr5.1:59835103-59835122	MS.gene017337:intron	65.0%
	ACGGCGTTTCGCGGCCGTAA+CGG	-	chr5.1:59835101-59835120	None:intergenic	65.0%
	GCGGCCGTAACGGCGTTTCA+CGG	-	chr5.1:59835091-59835110	None:intergenic	65.0%
	TCGCGATCGCGGTCGCGTTA+AGG	-	chr5.1:59835918-59835937	None:intergenic	65.0%
	AACGGTCGCGGTCGCGATCG+CGG	-	chr5.1:59835929-59835948	None:intergenic	70.0%
	GGGCCCGCGGTCAACAAGGA+AGG	-	chr5.1:59835358-59835377	None:intergenic	70.0%
	GGTGGGGCCCGCGGTCAACA+AGG	-	chr5.1:59835362-59835381	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	59834388	59836236	59834388	ID=MS.gene017337
chr5.1	mRNA	59834388	59836236	59834388	ID=MS.gene017337.t1;Parent=MS.gene017337
chr5.1	exon	59834388	59834762	59834388	ID=MS.gene017337.t1.exon1;Parent=MS.gene017337.t1
chr5.1	CDS	59834388	59834762	59834388	ID=cds.MS.gene017337.t1;Parent=MS.gene017337.t1
chr5.1	exon	59836024	59836236	59836024	ID=MS.gene017337.t1.exon2;Parent=MS.gene017337.t1
chr5.1	CDS	59836024	59836236	59836024	ID=cds.MS.gene017337.t1;Parent=MS.gene017337.t1

Gene Sequence

>MS.gene017337

ATGTTGTTCAACCATTTCAGCCATACACACAAAGATTCTCTAGTCGAATTTTCTTATGGTAACTCCTTCATTGTGCCCTTGAAGTCTAATGATGAAATTGTTGTTCTTCAAGAGGAAAATGATGAAAAACTGTTTATTCTCAATAATAGTACTATGTTGTTAGGAAATGCAGTCAATATTAGTTGCATTGATCATAAATCTTCCGAGTCAAGGTATAGTTATGATATATTAGTTCGATCCAAGAGAGACAAAGTGAAATTACAATCTTTTGCGAAGTACGTCCAACAGGCCACTGCAACTCTTTTATCCGAGTTCCTTGTGATTCCAATTGGTTCTTCTGAACCTTTCAAGCTAGAAATTTGCATAACCCCCATGGTACTTCATATCTTCTTTTCTCTGCTTTTCTTTTCCAATTAAAGTTTTGTTATTTTCTTTTATGTTTTGAATTTATATTCTATCATTTTATCTCAAATTCATCATATTTACAAATGCCAAAGCTAAGGTTGTTAGTTTTTTCTATTTTTGGATTAATTCTTGAAATAGCAGTATCAAGCAAGGTTTTAAAAAACGGGACGTTACCGCAAAAACGGCCGTTACAAATCGGTATCGGCAGCGGCCGTTACCGTTTTTGCCCCTTTTAACGCTGAGAAAGAAATTCACAGCAATATCGCCGTTACAGCGTTACGGAACGCCGTTACGACCGTGAAACGCCGTTACGGCCGCGAAACGCCGTTACGGACTCCAACTTGAAAATTCAGTCAAAACTTTTTTCTCACTTTTCTCTCTATACAAACATTCACTGTGAAATATAAGCTTAGATTCATGATCAGCGTGAAAATCCAATCAAAATGGTATTTTAGTTTGTGAGATTTGGTGAACATTTGAGGTTTTAGAAAATTCAACAGTGGTGATGTTCTTGTTGTTGTTCTTCACGTGAAGAAAGGAAGAAGAAGGAGTTGACCTCCTTCCTTCCTTGTTGACCGCGGGCCCCACCTGCAGTTTTGTCCTATATGCTGTTGCTTATGCACCCCCTTTTTCATATCTGCACCCTTGGTTTTTTAACTATATGTAGGAATTAAATTTGGACCCCTTGATGCATCAAGTGGTCCAGATTTATTCCAGCTGAGCCAATTTTGTTTTTATTTATTTCTTCACCATTTTTATTATTTTTTACACCATTTTTGGCACTTTAATGCCTCTTTTTTATTCATAAAAATTTATGATGTGAACTAAATGTAGTTAATTGATCATGAACTATGTTTAAAGATATGCTATGAGTAGTAATTTATTAGTTAATTTCTTTTCAATCTGTCAAACATTCTATCTTTACTAAATGTAGTCTATTTTTATTATTATATTCACTTTAAACATGTTATAATTATGGAAAAAAAAGTATTAATCTAAGTTATTATACATTATATGATAACATAAATAGTTTTAATACGTTTTGTGAAACATTTTGACTAATTCACACCGCGAAGACCGTTATTTGTATCGCAGCGTCCGTTACAGCCGAAATCGCGACAACCTTAACGCGACCGCGATCGCGACCGCGACCGTTTTTTAGAACCTTGGTATCAAGTTTTCTTTTATTGATTTGATGGTAATTGTTGTGCAGATGCAAATTTTTGTAAAGGATATGACTGGAGAAATGATACCTCTCGTGGTTGAGAGTTCAGACACAATAGCCGATGTGAAGGAGAAGATGCTTGACATAAATGGGATACCAGTGCAGGACCAAGTTCTGTTCTATGGCGGTGAGCTTACTAACGACCTGAGTACCCTTGCCGATTATGACATCGAAGAGAATTCAACCCTCGTCTACTTCATCCGCCAAATTAGGGACTAG

Protein sequence

>MS.gene017337.t1

MLFNHFSHTHKDSLVEFSYGNSFIVPLKSNDEIVVLQEENDEKLFILNNSTMLLGNAVNISCIDHKSSESRYSYDILVRSKRDKVKLQSFAKYVQQATATLLSEFLVIPIGSSEPFKLEICITPMDMTGEMIPLVVESSDTIADVKEKMLDINGIPVQDQVLFYGGELTNDLSTLADYDIEENSTLVYFIRQIRD