AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009570.t1 MTR_5g076720 70.175 228 66 2 2 227 162 389 2.91e-104 308
MS.gene009570.t1 MTR_5g076810 65.766 222 73 2 2 222 44 263 4.11e-94 278
MS.gene009570.t1 MTR_1g046640 63.801 221 78 1 2 222 90 308 4.41e-90 269
MS.gene009570.t1 MTR_5g067400 63.801 221 78 1 2 222 91 309 5.57e-89 266
MS.gene009570.t1 MTR_1g046650 63.470 219 78 1 2 220 21 237 8.87e-89 263
MS.gene009570.t1 MTR_2g038420 62.174 230 83 3 2 227 105 334 8.54e-88 264
MS.gene009570.t1 MTR_1g046650 63.470 219 78 1 2 220 90 306 1.28e-87 263
MS.gene009570.t1 MTR_1g046650 63.470 219 78 1 2 220 90 306 3.61e-87 261
MS.gene009570.t1 MTR_1g046650 63.470 219 78 1 2 220 121 337 6.06e-87 262
MS.gene009570.t1 MTR_7g024290 61.947 226 83 2 2 226 91 314 2.74e-85 257
MS.gene009570.t1 MTR_5g061290 57.589 224 92 1 2 222 97 320 1.24e-82 250
MS.gene009570.t1 MTR_2g038430 58.403 238 87 3 2 227 105 342 7.22e-82 249
MS.gene009570.t1 MTR_5g076505 57.658 222 93 1 2 222 87 308 9.38e-82 248
MS.gene009570.t1 MTR_5g076520 60.090 223 87 2 2 222 91 313 1.13e-80 245
MS.gene009570.t1 MTR_7g094390 59.361 219 87 1 2 220 252 468 1.86e-79 247
MS.gene009570.t1 MTR_5g076660 57.143 231 94 2 2 229 113 341 2.04e-76 235
MS.gene009570.t1 MTR_5g076370 53.571 224 99 2 2 222 114 335 1.36e-69 218
MS.gene009570.t1 MTR_5g076820 62.295 183 65 3 2 181 98 279 2.57e-67 210
MS.gene009570.t1 MTR_5g076540 68.841 138 43 0 2 139 91 228 9.08e-61 192
MS.gene009570.t1 MTR_5g077020 67.785 149 42 3 2 148 62 206 1.65e-57 183
MS.gene009570.t1 MTR_4g058025 70.476 105 30 1 2 105 24 128 1.89e-43 145
MS.gene009570.t1 MTR_4g094468 39.073 151 91 1 2 152 177 326 1.07e-25 103
MS.gene009570.t1 MTR_4g088485 48.101 79 41 0 144 222 128 206 2.02e-15 73.2
MS.gene009570.t1 MTR_4g088485 53.623 69 32 0 154 222 1 69 1.79e-14 70.5
MS.gene009570.t1 MTR_7g116360 48.101 79 41 0 144 222 67 145 2.55e-15 73.2
MS.gene009570.t1 MTR_7g116360 48.101 79 41 0 144 222 143 221 2.55e-15 73.2
MS.gene009570.t1 MTR_7g116360 53.623 69 32 0 154 222 1 69 1.94e-14 70.9
MS.gene009570.t1 MTR_1g066390 48.101 79 41 0 144 222 67 145 2.66e-15 73.2
MS.gene009570.t1 MTR_1g066390 48.101 79 41 0 144 222 143 221 2.66e-15 73.2
MS.gene009570.t1 MTR_1g066390 53.623 69 32 0 154 222 1 69 2.04e-14 70.9
MS.gene009570.t1 MTR_5g092700 53.623 69 32 0 154 222 1 69 4.98e-15 70.9
MS.gene009570.t1 MTR_4g073580 53.623 69 32 0 154 222 1 69 4.98e-15 70.9
MS.gene009570.t1 MTR_4g080920 48.101 79 41 0 144 222 67 145 5.32e-15 72.4
MS.gene009570.t1 MTR_4g080920 52.174 69 33 0 154 222 1 69 1.74e-13 68.2
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 5.83e-15 72.8
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 5.83e-15 72.8
MS.gene009570.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 4.12e-14 70.5
MS.gene009570.t1 MTR_6g061930 48.101 79 41 0 144 222 67 145 5.94e-15 73.2
MS.gene009570.t1 MTR_6g061930 48.101 79 41 0 144 222 204 282 5.94e-15 73.2
MS.gene009570.t1 MTR_6g061930 53.623 69 32 0 154 222 1 69 4.66e-14 70.5
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 67 145 6.20e-15 73.2
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 143 221 6.20e-15 73.2
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 219 297 6.20e-15 73.2
MS.gene009570.t1 MTR_4g081010 53.623 69 32 0 154 222 1 69 4.36e-14 70.9
MS.gene009570.t1 MTR_7g105080 53.623 69 32 0 154 222 1 69 8.17e-15 69.7
MS.gene009570.t1 MTR_3g092130 53.623 69 32 0 154 222 1 69 8.17e-15 69.7
MS.gene009570.t1 MTR_1g059690 53.623 69 32 0 154 222 1 69 8.17e-15 69.7
MS.gene009570.t1 MTR_7g116360 48.101 79 41 0 144 222 115 193 8.40e-15 72.8
MS.gene009570.t1 MTR_7g116360 48.101 79 41 0 144 222 191 269 8.40e-15 72.8
MS.gene009570.t1 MTR_7g116360 53.623 69 32 0 154 222 49 117 6.70e-14 70.1
MS.gene009570.t1 MTR_4g091580 48.101 79 41 0 144 222 67 145 8.83e-15 73.6
MS.gene009570.t1 MTR_4g091580 48.101 79 41 0 144 222 143 221 8.83e-15 73.6
MS.gene009570.t1 MTR_4g091580 48.101 79 41 0 144 222 295 373 8.83e-15 73.6
MS.gene009570.t1 MTR_4g091580 48.101 79 41 0 144 222 219 297 1.16e-14 73.2
MS.gene009570.t1 MTR_4g091580 53.623 69 32 0 154 222 1 69 5.93e-14 71.2
MS.gene009570.t1 MTR_8g081020 48.101 79 41 0 144 222 67 145 9.17e-15 73.6
MS.gene009570.t1 MTR_8g081020 48.101 79 41 0 144 222 143 221 9.17e-15 73.6
MS.gene009570.t1 MTR_8g081020 48.101 79 41 0 144 222 219 297 9.17e-15 73.6
MS.gene009570.t1 MTR_8g081020 48.101 79 41 0 144 222 295 373 9.17e-15 73.6
MS.gene009570.t1 MTR_8g081020 53.623 69 32 0 154 222 1 69 6.04e-14 70.9
MS.gene009570.t1 MTR_4g080797 48.101 79 41 0 144 222 67 145 9.26e-15 73.6
MS.gene009570.t1 MTR_4g080797 48.101 79 41 0 144 222 143 221 9.26e-15 73.6
MS.gene009570.t1 MTR_4g080797 48.101 79 41 0 144 222 219 297 9.26e-15 73.6
MS.gene009570.t1 MTR_4g080797 48.101 79 41 0 144 222 295 373 9.26e-15 73.6
MS.gene009570.t1 MTR_4g080797 53.623 69 32 0 154 222 1 69 6.16e-14 70.9
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 9.26e-15 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 9.26e-15 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 219 297 9.26e-15 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 295 373 9.26e-15 73.6
MS.gene009570.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 6.16e-14 70.9
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 67 145 9.81e-15 73.2
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 143 221 9.81e-15 73.2
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 219 297 9.81e-15 73.2
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 295 373 9.81e-15 73.2
MS.gene009570.t1 MTR_4g081010 53.623 69 32 0 154 222 1 69 6.46e-14 70.9
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 67 145 1.03e-14 72.4
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 143 221 1.03e-14 72.4
MS.gene009570.t1 MTR_4g081010 53.623 69 32 0 154 222 1 69 7.11e-14 70.1
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 1.16e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 1.16e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 219 297 1.16e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 295 373 1.16e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 371 449 1.16e-14 73.6
MS.gene009570.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 7.62e-14 70.9
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 1.16e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 1.16e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 219 297 1.16e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 295 373 1.16e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 371 449 1.16e-14 73.6
MS.gene009570.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 7.62e-14 70.9
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 67 145 1.21e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 143 221 1.21e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 219 297 1.21e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 295 373 1.21e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 371 449 1.21e-14 73.6
MS.gene009570.t1 MTR_8g018230 48.101 79 41 0 144 222 447 525 1.21e-14 73.6
MS.gene009570.t1 MTR_8g018230 53.623 69 32 0 154 222 1 69 7.80e-14 71.2
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 67 145 1.25e-14 73.6
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 143 221 1.25e-14 73.6
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 219 297 1.25e-14 73.6
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 295 373 1.25e-14 73.6
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 371 449 1.25e-14 73.6
MS.gene009570.t1 MTR_4g081010 48.101 79 41 0 144 222 447 525 1.25e-14 73.6
MS.gene009570.t1 MTR_4g081010 53.623 69 32 0 154 222 1 69 8.10e-14 70.9
MS.gene009570.t1 MTR_4g091580 48.101 79 41 0 144 222 67 145 1.30e-14 73.2
MS.gene009570.t1 MTR_4g091580 48.101 79 41 0 144 222 143 221 1.30e-14 73.2
MS.gene009570.t1 MTR_4g091580 48.101 79 41 0 144 222 219 297 1.30e-14 73.2
MS.gene009570.t1 MTR_4g091580 48.101 79 41 0 144 222 371 449 1.30e-14 73.2
MS.gene009570.t1 MTR_4g091580 48.101 79 41 0 144 222 447 525 1.30e-14 73.2
MS.gene009570.t1 MTR_4g091580 48.101 79 41 0 144 222 295 373 5.57e-14 71.6
MS.gene009570.t1 MTR_4g091580 53.623 69 32 0 154 222 1 69 8.33e-14 70.9
MS.gene009570.t1 MTR_4g073580 53.623 69 32 0 154 222 1 69 1.36e-14 70.5
MS.gene009570.t1 MTR_3g092130 53.623 69 32 0 154 222 1 69 1.68e-14 68.9
MS.gene009570.t1 MTR_8g088060 53.623 69 32 0 154 222 1 69 2.20e-14 68.9
MS.gene009570.t1 MTR_5g033960 53.623 69 32 0 154 222 1 69 2.34e-14 68.9
MS.gene009570.t1 MTR_4g088495 48.101 79 41 0 144 222 67 145 3.23e-14 72.4
MS.gene009570.t1 MTR_4g088495 48.101 79 41 0 144 222 143 221 3.23e-14 72.4
MS.gene009570.t1 MTR_4g088495 48.101 79 41 0 144 222 219 297 3.23e-14 72.4
MS.gene009570.t1 MTR_4g088495 48.101 79 41 0 144 222 295 373 3.23e-14 72.4
MS.gene009570.t1 MTR_4g088495 48.101 79 41 0 144 222 371 449 3.23e-14 72.4
MS.gene009570.t1 MTR_4g088495 48.101 79 41 0 144 222 447 525 3.23e-14 72.4
MS.gene009570.t1 MTR_4g088495 48.101 79 41 0 144 222 523 601 3.23e-14 72.4
MS.gene009570.t1 MTR_4g088495 48.101 79 41 0 144 222 599 677 3.23e-14 72.4
MS.gene009570.t1 MTR_4g088495 48.101 79 41 0 144 222 675 753 3.23e-14 72.4
MS.gene009570.t1 MTR_4g088495 48.101 79 41 0 144 222 751 829 3.23e-14 72.4
MS.gene009570.t1 MTR_4g088495 53.623 69 32 0 154 222 1 69 1.01e-13 70.9
MS.gene009570.t1 MTR_5g061310 45.205 73 39 1 156 227 4 76 1.39e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009570.t1 AT4G05050 48.101 79 41 0 144 222 67 145 6.60e-16 73.2
MS.gene009570.t1 AT4G05050 53.623 69 32 0 154 222 1 69 5.32e-15 70.9
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 67 145 6.60e-16 73.2
MS.gene009570.t1 AT4G05320 53.623 69 32 0 154 222 1 69 5.32e-15 70.9
MS.gene009570.t1 AT1G55060 45.977 87 47 0 136 222 59 145 1.44e-15 73.9
MS.gene009570.t1 AT1G55060 45.570 79 43 0 144 222 143 221 3.94e-13 67.4
MS.gene009570.t1 AT4G05050 48.101 79 41 0 144 222 67 145 2.67e-15 73.2
MS.gene009570.t1 AT4G05050 48.101 79 41 0 144 222 143 221 2.67e-15 73.2
MS.gene009570.t1 AT4G05050 53.623 69 32 0 154 222 1 69 2.03e-14 70.9
MS.gene009570.t1 AT4G05050 48.101 79 41 0 144 222 67 145 2.67e-15 73.2
MS.gene009570.t1 AT4G05050 48.101 79 41 0 144 222 143 221 2.67e-15 73.2
MS.gene009570.t1 AT4G05050 53.623 69 32 0 154 222 1 69 2.03e-14 70.9
MS.gene009570.t1 AT4G05050 48.101 79 41 0 144 222 67 145 2.67e-15 73.2
MS.gene009570.t1 AT4G05050 48.101 79 41 0 144 222 143 221 2.67e-15 73.2
MS.gene009570.t1 AT4G05050 53.623 69 32 0 154 222 1 69 2.03e-14 70.9
MS.gene009570.t1 AT4G02890 48.101 79 41 0 144 222 67 145 2.67e-15 73.2
MS.gene009570.t1 AT4G02890 48.101 79 41 0 144 222 143 221 2.67e-15 73.2
MS.gene009570.t1 AT4G02890 53.623 69 32 0 154 222 1 69 2.03e-14 70.9
MS.gene009570.t1 AT4G02890 48.101 79 41 0 144 222 67 145 2.67e-15 73.2
MS.gene009570.t1 AT4G02890 48.101 79 41 0 144 222 143 221 2.67e-15 73.2
MS.gene009570.t1 AT4G02890 53.623 69 32 0 154 222 1 69 2.03e-14 70.9
MS.gene009570.t1 AT5G03240 48.101 79 41 0 144 222 67 145 5.94e-15 73.6
MS.gene009570.t1 AT5G03240 48.101 79 41 0 144 222 143 221 5.94e-15 73.6
MS.gene009570.t1 AT5G03240 48.101 79 41 0 144 222 219 297 5.94e-15 73.6
MS.gene009570.t1 AT5G03240 53.623 69 32 0 154 222 1 69 4.22e-14 70.9
MS.gene009570.t1 AT5G03240 48.101 79 41 0 144 222 67 145 5.94e-15 73.6
MS.gene009570.t1 AT5G03240 48.101 79 41 0 144 222 143 221 5.94e-15 73.6
MS.gene009570.t1 AT5G03240 48.101 79 41 0 144 222 219 297 5.94e-15 73.6
MS.gene009570.t1 AT5G03240 53.623 69 32 0 154 222 1 69 4.22e-14 70.9
MS.gene009570.t1 AT5G03240 48.101 79 41 0 144 222 67 145 5.94e-15 73.6
MS.gene009570.t1 AT5G03240 48.101 79 41 0 144 222 143 221 5.94e-15 73.6
MS.gene009570.t1 AT5G03240 48.101 79 41 0 144 222 219 297 5.94e-15 73.6
MS.gene009570.t1 AT5G03240 53.623 69 32 0 154 222 1 69 4.22e-14 70.9
MS.gene009570.t1 AT5G20620 48.101 79 41 0 144 222 67 145 5.94e-15 73.6
MS.gene009570.t1 AT5G20620 48.101 79 41 0 144 222 143 221 5.94e-15 73.6
MS.gene009570.t1 AT5G20620 48.101 79 41 0 144 222 219 297 5.94e-15 73.6
MS.gene009570.t1 AT5G20620 53.623 69 32 0 154 222 1 69 4.22e-14 70.9
MS.gene009570.t1 AT2G35635 53.623 69 32 0 154 222 1 69 6.28e-15 70.5
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 67 145 6.31e-15 73.2
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 143 221 6.31e-15 73.2
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 219 297 6.31e-15 73.2
MS.gene009570.t1 AT4G05320 53.623 69 32 0 154 222 1 69 4.44e-14 70.9
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 67 145 6.31e-15 73.2
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 143 221 6.31e-15 73.2
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 219 297 6.31e-15 73.2
MS.gene009570.t1 AT4G05320 53.623 69 32 0 154 222 1 69 4.44e-14 70.9
MS.gene009570.t1 AT4G02890 48.101 79 41 0 144 222 67 145 6.31e-15 73.2
MS.gene009570.t1 AT4G02890 48.101 79 41 0 144 222 143 221 6.31e-15 73.2
MS.gene009570.t1 AT4G02890 48.101 79 41 0 144 222 219 297 6.31e-15 73.2
MS.gene009570.t1 AT4G02890 53.623 69 32 0 154 222 1 69 4.44e-14 70.9
MS.gene009570.t1 AT4G02890 48.101 79 41 0 144 222 67 145 6.31e-15 73.2
MS.gene009570.t1 AT4G02890 48.101 79 41 0 144 222 143 221 6.31e-15 73.2
MS.gene009570.t1 AT4G02890 48.101 79 41 0 144 222 219 297 6.31e-15 73.2
MS.gene009570.t1 AT4G02890 53.623 69 32 0 154 222 1 69 4.44e-14 70.9
MS.gene009570.t1 AT1G31340 53.623 69 32 0 154 222 1 69 7.81e-15 70.5
MS.gene009570.t1 AT5G20620 48.101 79 41 0 144 222 67 145 9.56e-15 73.6
MS.gene009570.t1 AT5G20620 48.101 79 41 0 144 222 143 221 9.56e-15 73.6
MS.gene009570.t1 AT5G20620 48.101 79 41 0 144 222 219 297 9.56e-15 73.6
MS.gene009570.t1 AT5G20620 48.101 79 41 0 144 222 295 373 9.56e-15 73.6
MS.gene009570.t1 AT5G20620 53.623 69 32 0 154 222 1 69 6.35e-14 70.9
MS.gene009570.t1 AT1G65350 48.101 79 41 0 144 222 142 220 9.59e-15 72.8
MS.gene009570.t1 AT1G65350 53.623 69 32 0 154 222 1 69 4.62e-14 70.9
MS.gene009570.t1 AT1G65350 46.835 79 41 1 144 222 67 144 2.96e-12 65.9
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 67 145 9.70e-15 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 143 221 9.70e-15 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 219 297 9.70e-15 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 295 373 9.70e-15 73.6
MS.gene009570.t1 AT4G05320 53.623 69 32 0 154 222 1 69 6.45e-14 70.9
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 67 145 9.70e-15 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 143 221 9.70e-15 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 219 297 9.70e-15 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 295 373 9.70e-15 73.6
MS.gene009570.t1 AT4G05320 53.623 69 32 0 154 222 1 69 6.45e-14 70.9
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 67 145 9.70e-15 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 143 221 9.70e-15 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 219 297 9.70e-15 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 295 373 9.70e-15 73.6
MS.gene009570.t1 AT4G05320 53.623 69 32 0 154 222 1 69 6.45e-14 70.9
MS.gene009570.t1 AT3G52590 53.623 69 32 0 154 222 1 69 1.05e-14 69.3
MS.gene009570.t1 AT2G36170 53.623 69 32 0 154 222 1 69 1.05e-14 69.3
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 67 145 1.22e-14 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 143 221 1.22e-14 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 219 297 1.22e-14 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 295 373 1.22e-14 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 371 449 1.22e-14 73.6
MS.gene009570.t1 AT4G05320 53.623 69 32 0 154 222 1 69 7.98e-14 70.9
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 67 145 1.22e-14 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 143 221 1.22e-14 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 219 297 1.22e-14 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 295 373 1.22e-14 73.6
MS.gene009570.t1 AT4G05320 48.101 79 41 0 144 222 371 449 1.22e-14 73.6
MS.gene009570.t1 AT4G05320 53.623 69 32 0 154 222 1 69 7.98e-14 70.9
MS.gene009570.t1 AT1G23410 53.623 69 32 0 154 222 1 69 1.67e-14 69.3
MS.gene009570.t1 AT2G47110 53.623 69 32 0 154 222 1 69 2.03e-14 69.3
MS.gene009570.t1 AT2G47110 53.623 69 32 0 154 222 1 69 2.03e-14 69.3
MS.gene009570.t1 AT3G62250 53.623 69 32 0 154 222 1 69 2.54e-14 68.9
MS.gene009570.t1 AT5G37640 46.835 79 42 0 144 222 69 147 2.69e-14 71.6
MS.gene009570.t1 AT5G37640 44.304 79 44 0 144 222 145 223 5.49e-12 65.1
MS.gene009570.t1 AT5G37640 46.250 80 42 1 144 222 221 300 1.55e-11 63.9
MS.gene009570.t1 AT5G37930 29.801 151 102 2 2 148 190 340 5.29e-13 68.2
MS.gene009570.t1 AT3G09790 46.835 79 42 0 144 222 69 147 5.32e-13 68.6
MS.gene009570.t1 AT3G09790 50.000 70 35 0 153 222 2 71 1.12e-11 64.7
MS.gene009570.t1 AT3G09790 43.478 92 42 3 144 225 459 550 5.62e-11 62.8
MS.gene009570.t1 AT3G09790 46.835 79 42 0 144 222 69 147 5.32e-13 68.6
MS.gene009570.t1 AT3G09790 50.000 70 35 0 153 222 2 71 1.12e-11 64.7
MS.gene009570.t1 AT3G09790 43.478 92 42 3 144 225 459 550 5.62e-11 62.8
MS.gene009570.t1 AT1G53930 46.479 71 38 0 156 226 88 158 2.40e-12 63.5

Find 52 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTGATTTCTTAACTCTA+AGG 0.248144 5.3:-61953581 None:intergenic
GTTCTTCAAGAGGAAAATTA+TGG 0.263266 5.3:+61953039 MS.gene009570:CDS
CTAGGCCCTTTACAAAGATT+TGG 0.273442 5.3:-61953542 None:intergenic
GCAGTCAATATTTGCTGCTT+TGG 0.307306 5.3:+61953105 MS.gene009570:CDS
GTCTCACTCCAGCGTTCTCT+TGG 0.353127 5.3:+61953738 MS.gene009570:CDS
ATCTTTGTAAAGGGCCTAGA+TGG 0.353834 5.3:+61953546 MS.gene009570:CDS
TACTCGGACTCGGGTGTGTC+TGG 0.357737 5.3:-61953129 None:intergenic
AGAAACTCTGATAAAAGATT+TGG 0.363388 5.3:-61953234 None:intergenic
CATCTCGTCAACGGCGGAAA+AGG 0.365718 5.3:-61953825 None:intergenic
ACTAATCGCCAATCGTCTTC+CGG 0.382591 5.3:-61953771 None:intergenic
AACAAAGTCACAACCTGAAA+AGG 0.402082 5.3:-61952902 None:intergenic
GGTTTCATCATTAGACTTCA+AGG 0.410456 5.3:-61953013 None:intergenic
TATAGATGTTGTAGTCGAAA+AGG 0.428331 5.3:-61953704 None:intergenic
AAAGGGTCAGGTTTCCATAT+AGG 0.437972 5.3:-61953686 None:intergenic
ATCAGACGTTGAGCGGCCAC+TGG 0.450646 5.3:-61953648 None:intergenic
GGGTCATACACTTTCCATCT+AGG 0.451359 5.3:-61953560 None:intergenic
GTCTGATTTCTTAACTCTAA+GGG 0.469256 5.3:-61953580 None:intergenic
TATTGCAAAGAATGTCCAAC+AGG 0.484330 5.3:+61953203 MS.gene009570:CDS
TCTCACTCCAGCGTTCTCTT+GGG 0.485099 5.3:+61953739 MS.gene009570:CDS
CAGATCCAAATCTTTGTAAA+GGG 0.487025 5.3:+61953537 MS.gene009570:intron
TGTTGTAGTCGAAAAGGGTC+AGG 0.487757 5.3:-61953698 None:intergenic
AGAGGTTCAGAAGAATCAAA+TGG 0.487848 5.3:-61953264 None:intergenic
CAATATATCATAACTATACT+CGG 0.493864 5.3:-61953145 None:intergenic
GCAGATCCAAATCTTTGTAA+AGG 0.495328 5.3:+61953536 MS.gene009570:intron
ATAGATGTTGTAGTCGAAAA+GGG 0.531303 5.3:-61953703 None:intergenic
TGAAACCATTGTTCTTCAAG+AGG 0.538905 5.3:+61953029 MS.gene009570:CDS
ACAAAGTCACAACCTGAAAA+GGG 0.540410 5.3:-61952901 None:intergenic
AGACTTCAAGGAGACAATGA+AGG 0.541721 5.3:-61953001 None:intergenic
CTAGACGGCCGGAAGACGAT+TGG 0.543135 5.3:+61953763 MS.gene009570:CDS
TTCTCTTGGGACTAGACGGC+CGG 0.543462 5.3:+61953752 MS.gene009570:CDS
ATGCAAATTTCTAGCTTGAG+AGG 0.547282 5.3:-61953282 None:intergenic
AGGGACAGTAACATGGCTTA+CGG 0.547857 5.3:-61952882 None:intergenic
GGTGGACAATTGTCAAATGT+TGG 0.563243 5.3:-61953798 None:intergenic
ATCATAACTATACTCGGACT+CGG 0.565356 5.3:-61953139 None:intergenic
GTCAACGGCGGAAAAGGATG+AGG 0.572483 5.3:-61953819 None:intergenic
TGCATTTCAGCGATAAACAC+GGG 0.578429 5.3:+61952947 MS.gene009570:CDS
TCATAACTATACTCGGACTC+GGG 0.578996 5.3:-61953138 None:intergenic
GATTTGGTAAAGTAACCTGT+TGG 0.586732 5.3:-61953218 None:intergenic
CCTGAAAAGGGACAGTAACA+TGG 0.591203 5.3:-61952889 None:intergenic
TCAGACGTTGAGCGGCCACT+GGG 0.601307 5.3:-61953647 None:intergenic
AACGGCGGAAAAGGATGAGG+TGG 0.604435 5.3:-61953816 None:intergenic
GTGCATTTCAGCGATAAACA+CGG 0.612101 5.3:+61952946 MS.gene009570:CDS
AGCGTTCTCTTGGGACTAGA+CGG 0.615006 5.3:+61953748 MS.gene009570:CDS
GTCTAGTCCCAAGAGAACGC+TGG 0.620661 5.3:-61953746 None:intergenic
TTGCATTCACGTAACCTCCA+CGG 0.623413 5.3:+61953299 MS.gene009570:CDS
TGAGGTGGTCATCTCGTCAA+CGG 0.624853 5.3:-61953834 None:intergenic
GCAAAAGATCAGACGTTGAG+CGG 0.628431 5.3:-61953655 None:intergenic
AAGAGAACGCTGGAGTGAGA+CGG 0.637960 5.3:-61953736 None:intergenic
GCATTTCAGCGATAAACACG+GGG 0.695447 5.3:+61952948 MS.gene009570:CDS
GGTGGTCATCTCGTCAACGG+CGG 0.713045 5.3:-61953831 None:intergenic
GGATATAGGAAATACCGTGG+AGG 0.730393 5.3:-61953313 None:intergenic
TGACAAGACTGAGATCCCAG+TGG 0.762074 5.3:+61953632 MS.gene009570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATATTATTACTCTTTT+AGG + chr5.3:61953078-61953097 MS.gene009570:CDS 10.0%
!!! ATTTTCTTTTATTGATTTAA+TGG + chr5.3:61953503-61953522 MS.gene009570:intron 10.0%
!! CAATATATCATAACTATACT+CGG - chr5.3:61953148-61953167 None:intergenic 20.0%
!!! CTCAAATCAAATTTTCTTAT+GGG + chr5.3:61952974-61952993 MS.gene009570:CDS 20.0%
!!! TATTGATTTAATGGAAATTG+TGG + chr5.3:61953512-61953531 MS.gene009570:intron 20.0%
!!! TCTCAAATCAAATTTTCTTA+TGG + chr5.3:61952973-61952992 MS.gene009570:CDS 20.0%
! AGAAACTCTGATAAAAGATT+TGG - chr5.3:61953237-61953256 None:intergenic 25.0%
! GCAAATTATCTCAAATTCAT+CGG + chr5.3:61953406-61953425 MS.gene009570:intron 25.0%
! TAAAATACCAAGATTTCACT+AGG - chr5.3:61953361-61953380 None:intergenic 25.0%
AAATAGCCAAAGCAAAGAAT+AGG - chr5.3:61953337-61953356 None:intergenic 30.0%
ATAGATGTTGTAGTCGAAAA+GGG - chr5.3:61953706-61953725 None:intergenic 30.0%
CAAAGCAAAGAATAGGATAT+AGG - chr5.3:61953330-61953349 None:intergenic 30.0%
CAGATCCAAATCTTTGTAAA+GGG + chr5.3:61953537-61953556 MS.gene009570:intron 30.0%
CTATATCCTATTCTTTGCTT+TGG + chr5.3:61953328-61953347 MS.gene009570:intron 30.0%
GTCTGATTTCTTAACTCTAA+GGG - chr5.3:61953583-61953602 None:intergenic 30.0%
GTTCTTCAAGAGGAAAATTA+TGG + chr5.3:61953039-61953058 MS.gene009570:CDS 30.0%
TATAGATGTTGTAGTCGAAA+AGG - chr5.3:61953707-61953726 None:intergenic 30.0%
TGTCTGATTTCTTAACTCTA+AGG - chr5.3:61953584-61953603 None:intergenic 30.0%
! ATTTTCCTCTTGAAGAACAA+TGG - chr5.3:61953037-61953056 None:intergenic 30.0%
! CTATTTTCCTAGTGAAATCT+TGG + chr5.3:61953351-61953370 MS.gene009570:intron 30.0%
!! GTTTTTCAAACGCCAAAAAA+CGG + chr5.3:61953428-61953447 MS.gene009570:intron 30.0%
!!! AAACACAAACAACCGTTTTT+TGG - chr5.3:61953443-61953462 None:intergenic 30.0%
AACAAAGTCACAACCTGAAA+AGG - chr5.3:61952905-61952924 None:intergenic 35.0%
ACAAAGTCACAACCTGAAAA+GGG - chr5.3:61952904-61952923 None:intergenic 35.0%
AGAGGTTCAGAAGAATCAAA+TGG - chr5.3:61953267-61953286 None:intergenic 35.0%
ATAGGATATAGGAAATACCG+TGG - chr5.3:61953319-61953338 None:intergenic 35.0%
ATCATAACTATACTCGGACT+CGG - chr5.3:61953142-61953161 None:intergenic 35.0%
GCAGATCCAAATCTTTGTAA+AGG + chr5.3:61953536-61953555 MS.gene009570:intron 35.0%
GGTTTCATCATTAGACTTCA+AGG - chr5.3:61953016-61953035 None:intergenic 35.0%
TATTGCAAAGAATGTCCAAC+AGG + chr5.3:61953203-61953222 MS.gene009570:CDS 35.0%
TGAAACCATTGTTCTTCAAG+AGG + chr5.3:61953029-61953048 MS.gene009570:CDS 35.0%
! GATTTGGTAAAGTAACCTGT+TGG - chr5.3:61953221-61953240 None:intergenic 35.0%
! TTTTGCGGTAGATACCTATA+TGG + chr5.3:61953672-61953691 MS.gene009570:CDS 35.0%
!! ATGCAAATTTCTAGCTTGAG+AGG - chr5.3:61953285-61953304 None:intergenic 35.0%
AAAGGGTCAGGTTTCCATAT+AGG - chr5.3:61953689-61953708 None:intergenic 40.0%
AGACTTCAAGGAGACAATGA+AGG - chr5.3:61953004-61953023 None:intergenic 40.0%
ATCTTTGTAAAGGGCCTAGA+TGG + chr5.3:61953546-61953565 MS.gene009570:CDS 40.0%
CTAGGCCCTTTACAAAGATT+TGG - chr5.3:61953545-61953564 None:intergenic 40.0%
GGTGGACAATTGTCAAATGT+TGG - chr5.3:61953801-61953820 None:intergenic 40.0%
GTGCATTTCAGCGATAAACA+CGG + chr5.3:61952946-61952965 MS.gene009570:CDS 40.0%
TCATAACTATACTCGGACTC+GGG - chr5.3:61953141-61953160 None:intergenic 40.0%
TGCATTTCAGCGATAAACAC+GGG + chr5.3:61952947-61952966 MS.gene009570:CDS 40.0%
! GCAGTCAATATTTGCTGCTT+TGG + chr5.3:61953105-61953124 MS.gene009570:CDS 40.0%
ACTAATCGCCAATCGTCTTC+CGG - chr5.3:61953774-61953793 None:intergenic 45.0%
AGGGACAGTAACATGGCTTA+CGG - chr5.3:61952885-61952904 None:intergenic 45.0%
CCTGAAAAGGGACAGTAACA+TGG - chr5.3:61952892-61952911 None:intergenic 45.0%
GCAAAAGATCAGACGTTGAG+CGG - chr5.3:61953658-61953677 None:intergenic 45.0%
GCATTTCAGCGATAAACACG+GGG + chr5.3:61952948-61952967 MS.gene009570:CDS 45.0%
GGATATAGGAAATACCGTGG+AGG - chr5.3:61953316-61953335 None:intergenic 45.0%
GGGTCATACACTTTCCATCT+AGG - chr5.3:61953563-61953582 None:intergenic 45.0%
TGTTGTAGTCGAAAAGGGTC+AGG - chr5.3:61953701-61953720 None:intergenic 45.0%
TTGCATTCACGTAACCTCCA+CGG + chr5.3:61953299-61953318 MS.gene009570:CDS 45.0%
! CCATGTTACTGTCCCTTTTC+AGG + chr5.3:61952889-61952908 MS.gene009570:CDS 45.0%
! GCTCAACGTCTGATCTTTTG+CGG + chr5.3:61953657-61953676 MS.gene009570:CDS 45.0%
AAGAGAACGCTGGAGTGAGA+CGG - chr5.3:61953739-61953758 None:intergenic 50.0%
AGCGTTCTCTTGGGACTAGA+CGG + chr5.3:61953748-61953767 MS.gene009570:CDS 50.0%
TCTCACTCCAGCGTTCTCTT+GGG + chr5.3:61953739-61953758 MS.gene009570:CDS 50.0%
TGACAAGACTGAGATCCCAG+TGG + chr5.3:61953632-61953651 MS.gene009570:CDS 50.0%
AACGGCGGAAAAGGATGAGG+TGG - chr5.3:61953819-61953838 None:intergenic 55.0%
CATCTCGTCAACGGCGGAAA+AGG - chr5.3:61953828-61953847 None:intergenic 55.0%
GTCAACGGCGGAAAAGGATG+AGG - chr5.3:61953822-61953841 None:intergenic 55.0%
GTCTAGTCCCAAGAGAACGC+TGG - chr5.3:61953749-61953768 None:intergenic 55.0%
GTCTCACTCCAGCGTTCTCT+TGG + chr5.3:61953738-61953757 MS.gene009570:CDS 55.0%
TTCTCTTGGGACTAGACGGC+CGG + chr5.3:61953752-61953771 MS.gene009570:CDS 55.0%
ATCAGACGTTGAGCGGCCAC+TGG - chr5.3:61953651-61953670 None:intergenic 60.0%
CTAGACGGCCGGAAGACGAT+TGG + chr5.3:61953763-61953782 MS.gene009570:CDS 60.0%
TACTCGGACTCGGGTGTGTC+TGG - chr5.3:61953132-61953151 None:intergenic 60.0%
TCAGACGTTGAGCGGCCACT+GGG - chr5.3:61953650-61953669 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 61952862 61953848 61952862 ID=MS.gene009570
chr5.3 mRNA 61952862 61953848 61952862 ID=MS.gene009570.t1;Parent=MS.gene009570
chr5.3 exon 61952862 61953320 61952862 ID=MS.gene009570.t1.exon1;Parent=MS.gene009570.t1
chr5.3 CDS 61952862 61953320 61952862 ID=cds.MS.gene009570.t1;Parent=MS.gene009570.t1
chr5.3 exon 61953540 61953848 61953540 ID=MS.gene009570.t1.exon2;Parent=MS.gene009570.t1
chr5.3 CDS 61953540 61953848 61953540 ID=cds.MS.gene009570.t1;Parent=MS.gene009570.t1
Gene Sequence

>MS.gene009570

ATGCATGAAGAACAATGCATCCGTAAGCCATGTTACTGTCCCTTTTCAGGTTGTGACTTTGTTCAATCATCAAACATGTTTTCTGTGCATTTCAGCGATAAACACGGGGATTCTCAAATCAAATTTTCTTATGGGAAATCCTTCATTGTCTCCTTGAAGTCTAATGATGAAACCATTGTTCTTCAAGAGGAAAATTATGGCAAACTCTTTACTCTCAATAATATTATTACTCTTTTAGGAAATGCAGTCAATATTTGCTGCTTTGGTCCAGACACACCCGAGTCCGAGTATAGTTATGATATATTGTCTACGTCTCAGTTATGCAAATTGAAATTACAATCTATTGCAAAGAATGTCCAACAGGTTACTTTACCAAATCTTTTATCAGAGTTTCTTGTGATTCCATTTGATTCTTCTGAACCTCTCAAGCTAGAAATTTGCATTCACGTAACCTCCACGGTATTTCCTATATCCTATTCTTTGCTTTGGCTATTTTCCTAGTGAAATCTTGGTATTTTATTTTATGTTTTGAATTTATACTCTAGCAAATTATCTCAAATTCATCGGTTTTTCAAACGCCAAAAAACGGTTGTTTGTGTTTTCTATTTTTTGATAAATTCTTGAAGTATCATAAGTCTCAAATTTTCTTTTATTGATTTAATGGAAATTGTGGTGCAGATCCAAATCTTTGTAAAGGGCCTAGATGGAAAGTGTATGACCCTTAGAGTTAAGAAATCAGACAAGTTAGACAAACTTAAAGAGATGATTCATGACAAGACTGAGATCCCAGTGGCCGCTCAACGTCTGATCTTTTGCGGTAGATACCTATATGGAAACCTGACCCTTTTCGACTACAACATCTATAACGAATCAACCGTCTCACTCCAGCGTTCTCTTGGGACTAGACGGCCGGAAGACGATTGGCGATTAGTACATCCAACATTTGACAATTGTCCACCTCATCCTTTTCCGCCGTTGACGAGATGA

Protein sequence

>MS.gene009570.t1

MHEEQCIRKPCYCPFSGCDFVQSSNMFSVHFSDKHGDSQIKFSYGKSFIVSLKSNDETIVLQEENYGKLFTLNNIITLLGNAVNICCFGPDTPESEYSYDILSTSQLCKLKLQSIAKNVQQVTLPNLLSEFLVIPFDSSEPLKLEICIHVTSTIQIFVKGLDGKCMTLRVKKSDKLDKLKEMIHDKTEIPVAAQRLIFCGRYLYGNLTLFDYNIYNESTVSLQRSLGTRRPEDDWRLVHPTFDNCPPHPFPPLTR