AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023088


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023088.t1 MTR_2g101610 82.160 639 103 4 1 631 1 636 0.0 1051
MS.gene023088.t1 MTR_2g101590 81.221 639 108 5 1 631 1 635 0.0 1038
MS.gene023088.t1 MTR_2g101560 82.969 640 97 4 1 631 1 637 0.0 1025
MS.gene023088.t1 MTR_2g101640 75.743 639 135 6 1 631 1 627 0.0 992
MS.gene023088.t1 MTR_4g011280 65.738 610 188 6 1 603 1 596 0.0 809
MS.gene023088.t1 MTR_1g057460 67.016 573 166 4 1 573 24 573 0.0 790
MS.gene023088.t1 MTR_1g057460 68.023 516 148 2 58 573 4 502 0.0 731
MS.gene023088.t1 MTR_0236s0050 68.992 516 143 4 58 573 4 502 0.0 712
MS.gene023088.t1 MTR_2g101650 55.498 582 250 5 1 578 1 577 0.0 679
MS.gene023088.t1 MTR_8g103233 47.727 572 293 6 16 585 6 573 0.0 529
MS.gene023088.t1 MTR_1g026740 46.154 559 288 6 16 566 2 555 8.64e-177 514
MS.gene023088.t1 MTR_1g009200 46.970 594 302 8 5 591 1 588 9.21e-175 509
MS.gene023088.t1 MTR_1g026750 46.287 579 291 7 16 585 2 569 9.66e-172 501
MS.gene023088.t1 MTR_1g026770 47.059 544 278 6 27 566 15 552 1.72e-166 488
MS.gene023088.t1 MTR_5g038060 37.265 585 344 11 15 583 19 596 1.03e-133 405
MS.gene023088.t1 MTR_5g055000 35.664 572 349 9 25 587 16 577 1.03e-124 381
MS.gene023088.t1 MTR_4g107580 35.343 597 349 11 9 576 7 595 6.54e-123 377
MS.gene023088.t1 MTR_4g107510 36.637 565 344 8 11 564 20 581 1.03e-122 376
MS.gene023088.t1 MTR_8g469480 35.915 568 342 9 30 581 41 602 5.36e-120 369
MS.gene023088.t1 MTR_7g088790 34.223 637 372 15 9 631 10 613 2.29e-119 368
MS.gene023088.t1 MTR_8g469470 36.332 567 340 11 14 564 17 578 6.20e-116 358
MS.gene023088.t1 MTR_5g038190 35.702 563 343 11 14 564 10 565 1.89e-115 357
MS.gene023088.t1 MTR_4g107530 35.085 590 358 11 14 580 15 602 3.12e-115 357
MS.gene023088.t1 MTR_7g088825 32.815 579 370 10 17 585 12 581 4.58e-115 357
MS.gene023088.t1 MTR_7g088820 34.359 585 363 11 10 584 8 581 2.42e-114 354
MS.gene023088.t1 MTR_4g107610 32.410 614 373 14 14 609 18 607 6.07e-104 328
MS.gene023088.t1 MTR_4g015080 34.545 550 337 11 25 564 32 568 1.55e-102 323
MS.gene023088.t1 MTR_7g067010 34.806 566 331 13 15 558 3 552 3.11e-102 322
MS.gene023088.t1 MTR_3g462710 34.301 551 339 11 25 564 22 560 1.11e-101 321
MS.gene023088.t1 MTR_7g088820 33.902 528 328 11 67 584 3 519 6.88e-99 312
MS.gene023088.t1 MTR_7g064780 31.746 567 357 9 14 558 3 561 1.86e-98 313
MS.gene023088.t1 MTR_3g112460 34.458 563 337 12 25 578 21 560 4.12e-96 306
MS.gene023088.t1 MTR_3g112470 34.458 563 337 12 25 578 21 560 5.84e-96 306
MS.gene023088.t1 MTR_5g012270 31.504 565 364 12 25 577 26 579 8.18e-94 301
MS.gene023088.t1 MTR_7g064800 30.657 548 358 10 25 558 24 563 6.65e-91 293
MS.gene023088.t1 MTR_3g112450 34.507 568 340 13 7 564 6 551 7.43e-91 293
MS.gene023088.t1 MTR_1g009170 39.456 441 200 11 154 591 9 385 1.04e-89 284
MS.gene023088.t1 MTR_7g098200 32.767 589 337 16 36 592 38 599 2.55e-88 287
MS.gene023088.t1 MTR_2g093160 33.622 577 337 14 1 564 1 544 3.21e-88 285
MS.gene023088.t1 MTR_7g088820 33.543 477 296 11 118 584 6 471 6.55e-88 282
MS.gene023088.t1 MTR_4g101380 30.849 577 373 11 25 586 24 589 9.47e-88 285
MS.gene023088.t1 MTR_7g098220 32.546 593 357 13 11 584 12 580 1.34e-87 285
MS.gene023088.t1 MTR_7g098180 33.103 580 347 13 36 594 40 599 1.48e-87 285
MS.gene023088.t1 MTR_7g098200 32.821 585 332 15 36 592 38 589 1.99e-87 284
MS.gene023088.t1 MTR_4g033315 33.159 573 339 15 4 564 10 550 1.98e-86 280
MS.gene023088.t1 MTR_4g033310 33.159 573 339 15 4 564 10 550 1.98e-86 280
MS.gene023088.t1 MTR_4g114340 31.058 586 390 10 1 583 1 575 1.65e-85 279
MS.gene023088.t1 MTR_3g069500 30.449 601 376 14 1 584 1 576 1.66e-85 279
MS.gene023088.t1 MTR_5g012290 29.433 564 375 9 14 564 14 567 2.67e-85 278
MS.gene023088.t1 MTR_7g098220 33.981 515 303 10 85 584 44 536 6.07e-85 276
MS.gene023088.t1 MTR_2g093640 33.045 578 339 14 1 564 1 544 7.64e-85 276
MS.gene023088.t1 MTR_2g093180 33.102 577 341 13 1 564 1 545 5.00e-84 274
MS.gene023088.t1 MTR_7g098230 32.781 543 329 11 36 561 35 558 9.08e-84 275
MS.gene023088.t1 MTR_4g033325 32.162 569 348 10 4 564 10 548 9.90e-84 273
MS.gene023088.t1 MTR_3g462710 34.773 463 279 12 113 564 1 451 1.01e-83 270
MS.gene023088.t1 MTR_5g085850 31.607 560 357 10 29 582 32 571 1.98e-83 273
MS.gene023088.t1 MTR_7g098090 31.448 601 351 14 36 610 42 607 2.36e-83 274
MS.gene023088.t1 MTR_3g072300 32.616 558 343 16 23 564 18 558 3.55e-83 273
MS.gene023088.t1 MTR_1g075440 31.497 581 355 15 29 587 30 589 5.24e-83 273
MS.gene023088.t1 MTR_7g098040 31.882 574 360 12 36 593 43 601 3.41e-82 271
MS.gene023088.t1 MTR_4g033330 32.613 555 334 14 4 549 10 533 4.55e-82 268
MS.gene023088.t1 MTR_3g069440 30.676 577 368 13 24 587 29 586 4.69e-82 270
MS.gene023088.t1 MTR_7g006540 31.661 578 367 11 29 586 65 634 7.92e-82 271
MS.gene023088.t1 MTR_4g019580 30.576 556 365 11 36 584 45 586 1.39e-81 269
MS.gene023088.t1 MTR_3g069420 31.802 566 352 13 36 587 43 588 1.89e-81 268
MS.gene023088.t1 MTR_7g098160 30.192 573 370 11 36 593 42 599 4.32e-81 268
MS.gene023088.t1 MTR_7g065080 29.048 599 384 15 2 587 9 579 1.17e-80 266
MS.gene023088.t1 MTR_3g005010 31.365 542 333 8 29 564 32 540 2.98e-80 264
MS.gene023088.t1 MTR_7g065080 30.934 514 321 13 85 587 2 492 4.95e-80 262
MS.gene023088.t1 MTR_0294s0020 31.065 573 349 12 4 564 10 548 4.67e-79 261
MS.gene023088.t1 MTR_8g087810 32.082 586 366 14 15 571 2 584 1.47e-78 261
MS.gene023088.t1 MTR_7g098200 33.002 503 296 13 113 592 1 485 6.72e-77 253
MS.gene023088.t1 MTR_1g041815 31.294 572 363 13 36 593 36 591 5.52e-76 254
MS.gene023088.t1 MTR_2g005130 29.048 599 386 16 11 594 18 592 2.27e-75 252
MS.gene023088.t1 MTR_2g017750 28.974 604 395 14 1 582 11 602 3.84e-75 252
MS.gene023088.t1 MTR_3g100980 30.159 567 365 11 16 569 5 553 8.17e-75 250
MS.gene023088.t1 MTR_1g041835 31.616 563 343 16 36 577 36 577 8.99e-74 248
MS.gene023088.t1 MTR_4g033325 31.983 469 283 9 104 564 10 450 4.01e-73 243
MS.gene023088.t1 MTR_1g042310 30.853 551 349 12 29 564 28 561 4.41e-73 246
MS.gene023088.t1 MTR_1g085090 29.058 616 387 20 11 610 3 584 1.12e-72 245
MS.gene023088.t1 MTR_1g042310 32.460 496 303 12 84 564 46 524 1.49e-72 244
MS.gene023088.t1 MTR_8g038880 31.716 577 341 12 28 585 21 563 1.64e-72 244
MS.gene023088.t1 MTR_1g042310 32.460 496 303 12 84 564 39 517 1.77e-72 243
MS.gene023088.t1 MTR_3g014790 30.824 558 342 10 21 561 11 541 2.42e-71 241
MS.gene023088.t1 MTR_4g033325 32.949 434 268 8 138 564 7 424 4.49e-71 236
MS.gene023088.t1 MTR_1g041885 31.535 482 291 14 84 550 39 496 1.71e-70 238
MS.gene023088.t1 MTR_8g087780 30.109 548 355 13 15 538 2 545 2.70e-70 238
MS.gene023088.t1 MTR_4g033395 32.365 482 297 9 36 512 41 498 4.13e-70 236
MS.gene023088.t1 MTR_7g111260 30.986 568 347 20 11 563 3 540 5.56e-70 238
MS.gene023088.t1 MTR_4g033375 31.693 508 317 10 11 512 15 498 9.88e-70 235
MS.gene023088.t1 MTR_5g014150 28.546 557 377 12 37 580 54 602 1.43e-69 237
MS.gene023088.t1 MTR_3g100980 28.739 595 365 13 16 569 5 581 1.61e-69 237
MS.gene023088.t1 MTR_1g041875 31.203 532 323 18 29 543 31 536 2.24e-69 236
MS.gene023088.t1 MTR_4g033385 32.174 460 281 10 112 564 16 451 3.80e-69 232
MS.gene023088.t1 MTR_7g005930 28.741 588 385 14 10 584 18 584 2.93e-68 233
MS.gene023088.t1 MTR_4g098800 30.669 538 346 14 37 561 46 569 1.61e-65 226
MS.gene023088.t1 MTR_7g010820 30.481 561 359 15 1 544 2 548 3.63e-65 225
MS.gene023088.t1 MTR_4g098800 30.669 538 346 14 37 561 111 634 4.81e-65 226
MS.gene023088.t1 MTR_1g116930 28.975 566 367 15 15 564 8 554 4.30e-63 219
MS.gene023088.t1 MTR_7g013270 28.962 549 366 9 26 564 89 623 1.68e-60 213
MS.gene023088.t1 MTR_4g107670 28.269 566 351 19 28 563 25 565 3.23e-60 211
MS.gene023088.t1 MTR_6g008690 26.842 570 364 15 18 567 1 537 4.12e-56 199
MS.gene023088.t1 MTR_4g123537 28.796 573 362 20 11 564 22 567 5.07e-56 200
MS.gene023088.t1 MTR_8g469310 26.585 568 356 15 28 563 27 565 1.47e-55 198
MS.gene023088.t1 MTR_7g098150 31.166 446 257 13 36 457 42 461 1.37e-53 191
MS.gene023088.t1 MTR_5g038380 25.044 567 367 11 28 563 29 568 2.78e-53 192
MS.gene023088.t1 MTR_7g098210 28.660 485 261 8 85 559 25 434 2.09e-50 181
MS.gene023088.t1 MTR_4g033310 32.407 324 198 6 247 564 178 486 1.96e-48 177
MS.gene023088.t1 MTR_4g033310 34.500 200 113 6 4 201 10 193 8.28e-18 87.0
MS.gene023088.t1 MTR_7g052600 25.906 552 356 12 21 564 19 525 5.36e-41 157
MS.gene023088.t1 MTR_7g051880 24.867 563 370 12 4 558 2 519 1.29e-37 147
MS.gene023088.t1 MTR_4g024930 25.953 551 357 16 29 564 38 552 1.41e-37 147
MS.gene023088.t1 MTR_7g051830 24.821 560 374 11 4 558 2 519 3.30e-37 145
MS.gene023088.t1 MTR_8g091265 42.857 126 66 4 294 415 3 126 5.81e-21 89.7
MS.gene023088.t1 MTR_3g065350 28.916 166 108 4 336 499 1 158 6.76e-15 73.2
MS.gene023088.t1 MTR_4g033390 34.021 97 59 2 482 573 30 126 6.49e-13 66.2
MS.gene023088.t1 MTR_2g093650 39.216 102 60 1 340 441 32 131 1.82e-12 67.4
MS.gene023088.t1 MTR_7g064160 31.532 111 66 1 11 111 3 113 4.58e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023088.t1 AT1G52190 53.356 581 262 6 15 587 9 588 0.0 649
MS.gene023088.t1 AT3G16180 53.242 586 265 8 11 589 6 589 0.0 641
MS.gene023088.t1 AT1G68570 37.607 585 352 7 9 584 5 585 6.93e-126 384
MS.gene023088.t1 AT1G69870 35.556 585 361 9 18 592 42 620 3.75e-125 383
MS.gene023088.t1 AT5G62680 36.532 594 359 12 9 587 25 615 8.31e-116 359
MS.gene023088.t1 AT1G68570 36.757 555 338 7 39 584 5 555 4.86e-113 350
MS.gene023088.t1 AT3G47960 36.460 565 340 9 10 564 50 605 4.22e-111 347
MS.gene023088.t1 AT1G18880 35.283 547 337 9 30 564 22 563 2.80e-108 338
MS.gene023088.t1 AT1G27080 34.182 550 338 11 24 564 11 545 5.15e-108 337
MS.gene023088.t1 AT1G62200 36.778 571 336 10 1 560 25 581 1.51e-106 334
MS.gene023088.t1 AT2G02040 34.798 569 354 9 5 564 18 578 2.68e-105 331
MS.gene023088.t1 AT3G54140 36.127 537 326 9 36 564 33 560 9.13e-105 329
MS.gene023088.t1 AT3G54140 36.127 537 326 9 36 564 33 560 9.13e-105 329
MS.gene023088.t1 AT5G28470 34.686 542 335 10 25 557 15 546 4.94e-103 324
MS.gene023088.t1 AT5G01180 34.854 548 337 10 21 558 17 554 8.70e-102 321
MS.gene023088.t1 AT5G01180 34.854 548 337 10 21 558 17 554 8.70e-102 321
MS.gene023088.t1 AT5G01180 34.854 548 337 10 21 558 17 554 8.70e-102 321
MS.gene023088.t1 AT1G62200 35.333 600 334 11 1 560 25 610 1.45e-101 322
MS.gene023088.t1 AT1G62200 35.333 600 334 11 1 560 39 624 2.35e-101 322
MS.gene023088.t1 AT5G28470 34.502 542 334 11 25 557 15 544 3.78e-100 317
MS.gene023088.t1 AT1G27080 33.915 516 317 11 58 564 3 503 2.81e-99 313
MS.gene023088.t1 AT3G45650 33.453 559 347 9 9 564 4 540 8.81e-97 308
MS.gene023088.t1 AT3G45660 33.276 577 353 10 14 587 8 555 1.35e-96 307
MS.gene023088.t1 AT3G45660 33.276 577 353 10 14 587 8 555 1.35e-96 307
MS.gene023088.t1 AT3G45660 33.276 577 353 10 14 587 29 576 2.38e-96 307
MS.gene023088.t1 AT3G45650 31.966 585 347 10 9 564 4 566 4.23e-91 293
MS.gene023088.t1 AT2G26690 32.574 571 370 11 13 579 10 569 3.61e-90 291
MS.gene023088.t1 AT2G02020 33.211 545 315 10 25 564 40 540 1.52e-88 286
MS.gene023088.t1 AT2G26690 33.028 545 350 11 39 579 3 536 4.59e-87 282
MS.gene023088.t1 AT1G69860 32.971 552 337 12 25 564 16 546 1.35e-86 281
MS.gene023088.t1 AT3G54450 31.079 547 341 8 25 558 10 533 9.18e-86 279
MS.gene023088.t1 AT5G46050 31.530 536 340 10 21 543 19 540 1.44e-85 279
MS.gene023088.t1 AT2G26690 33.333 534 341 11 50 579 2 524 5.97e-85 276
MS.gene023088.t1 AT3G45710 30.481 561 357 9 12 564 6 541 2.91e-84 275
MS.gene023088.t1 AT3G45720 29.329 566 362 11 28 586 20 554 7.50e-84 274
MS.gene023088.t1 AT3G21670 30.952 588 372 14 11 586 12 577 7.49e-81 267
MS.gene023088.t1 AT5G46040 33.462 520 319 12 36 543 36 540 8.14e-81 266
MS.gene023088.t1 AT1G12110 32.149 563 348 15 21 564 19 566 9.40e-79 261
MS.gene023088.t1 AT3G45680 30.212 566 360 11 7 564 1 539 1.05e-78 260
MS.gene023088.t1 AT1G59740 31.338 568 354 16 11 561 23 571 1.07e-78 261
MS.gene023088.t1 AT1G22540 31.884 552 344 10 21 564 22 549 1.36e-78 260
MS.gene023088.t1 AT3G45700 30.071 562 348 12 11 564 5 529 4.27e-78 258
MS.gene023088.t1 AT2G40460 32.203 531 327 13 36 554 33 542 5.69e-78 259
MS.gene023088.t1 AT2G37900 29.533 535 347 11 36 561 47 560 1.30e-77 258
MS.gene023088.t1 AT5G46050 32.955 440 274 7 113 543 1 428 1.61e-77 254
MS.gene023088.t1 AT1G33440 30.268 598 350 18 23 586 32 596 2.07e-77 258
MS.gene023088.t1 AT3G53960 29.130 563 372 13 36 586 46 593 3.39e-77 257
MS.gene023088.t1 AT1G72125 30.798 539 340 9 36 564 38 553 9.91e-76 252
MS.gene023088.t1 AT2G37900 30.000 490 313 11 81 561 13 481 1.46e-75 250
MS.gene023088.t1 AT2G02020 31.550 542 307 12 25 564 40 519 3.96e-73 244
MS.gene023088.t1 AT5G13400 31.022 548 349 11 29 558 66 602 6.29e-73 246
MS.gene023088.t1 AT1G72140 30.347 547 325 12 36 564 43 551 8.10e-73 244
MS.gene023088.t1 AT1G22550 28.547 592 369 10 2 571 5 564 1.76e-71 241
MS.gene023088.t1 AT1G32450 28.970 573 380 10 37 587 47 614 4.42e-69 236
MS.gene023088.t1 AT1G22570 28.957 556 361 10 2 545 5 538 9.69e-68 231
MS.gene023088.t1 AT1G72130 28.877 561 325 10 25 564 23 530 4.92e-67 229
MS.gene023088.t1 AT1G72120 29.130 563 361 12 11 564 16 549 5.16e-66 226
MS.gene023088.t1 AT1G27040 29.466 543 359 11 29 563 25 551 5.19e-66 226
MS.gene023088.t1 AT1G27040 29.466 543 359 11 29 563 29 555 5.48e-66 226
MS.gene023088.t1 AT4G21680 28.125 576 389 15 3 564 6 570 2.71e-65 225
MS.gene023088.t1 AT1G22570 29.423 520 333 10 38 545 4 501 2.92e-65 224
MS.gene023088.t1 AT3G45690 28.187 557 327 14 15 564 6 496 3.84e-64 220
MS.gene023088.t1 AT1G27040 30.271 479 310 11 93 563 61 523 1.48e-63 219
MS.gene023088.t1 AT5G11570 45.238 252 124 5 317 565 237 477 1.39e-62 215
MS.gene023088.t1 AT5G11570 43.498 223 120 3 28 248 14 232 8.65e-45 166
MS.gene023088.t1 AT1G72130 29.412 442 248 9 144 564 14 412 5.97e-56 196
MS.gene023088.t1 AT1G72130 29.412 442 248 9 144 564 14 412 5.97e-56 196
MS.gene023088.t1 AT5G19640 26.863 577 382 15 28 591 60 609 1.30e-54 196
MS.gene023088.t1 AT5G14940 25.391 575 343 12 25 559 5 533 2.00e-53 192
MS.gene023088.t1 AT1G69850 25.664 565 372 14 29 563 27 573 1.65e-52 190
MS.gene023088.t1 AT3G25260 27.108 498 303 13 74 563 67 512 3.26e-52 188
MS.gene023088.t1 AT3G01350 25.694 576 372 16 25 570 5 554 7.05e-50 182
MS.gene023088.t1 AT5G62730 26.534 554 358 16 28 563 57 579 7.34e-47 174
MS.gene023088.t1 AT5G62730 26.557 546 352 16 36 563 6 520 1.98e-45 169
MS.gene023088.t1 AT3G25280 25.581 516 333 10 54 563 48 518 8.72e-43 162
MS.gene023088.t1 AT2G38100 24.304 539 350 14 58 584 5 497 2.08e-29 122
MS.gene023088.t1 AT2G38100 24.304 539 350 14 58 584 21 513 6.41e-29 121
MS.gene023088.t1 AT2G38100 24.304 539 350 14 58 584 27 519 8.57e-29 121

Find 117 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGTTTCTTCTGCACTTTC+TGG 0.083697 7.3:-52965424 MS.gene023088:CDS
TTCCAAAGCTCTATTGTTAT+TGG 0.116841 7.3:+52966448 None:intergenic
CTTTGTAATAAAACTCATTT+TGG 0.123205 7.3:+52965467 None:intergenic
GATCATCTTGGTTGGAAAAT+TGG 0.157074 7.3:-52966350 MS.gene023088:CDS
GCTGAAGCATTCAATGTTAT+TGG 0.158926 7.3:-52965490 MS.gene023088:CDS
TGATATTTGCAGCATTAATA+TGG 0.224125 7.3:-52965759 MS.gene023088:CDS
CTTGCACCTCAACTTGCTTT+GGG 0.276352 7.3:-52965520 MS.gene023088:CDS
CAATGGAATAACTTTAATAA+TGG 0.287573 7.3:+52965906 None:intergenic
CAAAGGATATGAGAAGTATT+TGG 0.297352 7.3:+52967774 None:intergenic
CTTGGTTGGAAAATTGGTTT+TGG 0.297432 7.3:-52966344 MS.gene023088:CDS
GCTTGCACCTCAACTTGCTT+TGG 0.303085 7.3:-52965521 MS.gene023088:CDS
ATTTCATGCTCTATAGCATT+TGG 0.310269 7.3:-52966500 MS.gene023088:CDS
TTAGTATGCAGTTGGGCTTA+TGG 0.310648 7.3:-52965229 MS.gene023088:CDS
GTCGTTTCGACAAGTATTAT+TGG 0.320080 7.3:-52965291 MS.gene023088:CDS
TCTGTCATAATAGCTCTTAC+TGG 0.324877 7.3:-52966389 MS.gene023088:CDS
GTCACCATGCCTTTCATCAT+TGG 0.331716 7.3:-52968017 MS.gene023088:intron
TGAAGTGATATGTCTGTCTA+AGG 0.345295 7.3:+52965819 None:intergenic
GGTCAGGTTGAGAAAGAAAA+TGG 0.346231 7.3:-52965043 MS.gene023088:CDS
ATTAACATTGGAGGCTCGTT+TGG 0.350690 7.3:-52965859 MS.gene023088:CDS
GAAACACTAGACATAGTCTT+TGG 0.360014 7.3:+52965439 None:intergenic
CCTCTTATCTTTGATGCTAA+AGG 0.364995 7.3:+52965709 None:intergenic
TTCTTCTGCACTTTCTGGAT+TGG 0.366449 7.3:-52965419 MS.gene023088:CDS
ATCAAATACGATGGCATGTT+GGG 0.369132 7.3:+52967830 None:intergenic
AAAAGAAGATACCAAGTTTC+CGG 0.371463 7.3:+52965387 None:intergenic
AGCAATTTCACACCTTTGAT+TGG 0.374887 7.3:-52967746 MS.gene023088:CDS
TCGTTTCGACAAGTATTATT+GGG 0.374905 7.3:-52965290 MS.gene023088:CDS
GTTATTCCATTGTGGTCAAC+AGG 0.380881 7.3:-52965895 MS.gene023088:CDS
TTCCAATAACAATAGAGCTT+TGG 0.382182 7.3:-52966450 MS.gene023088:CDS
AAATCCATCCTTCTTTGCCT+TGG 0.397035 7.3:+52965332 None:intergenic
CCAATTCCCATTCTTCTCTT+CGG 0.398109 7.3:+52965667 None:intergenic
TCAGCTGCATGGATGCAAAA+AGG 0.401822 7.3:+52966602 None:intergenic
TTGGACACTTGATCAATTGT+AGG 0.406411 7.3:+52965205 None:intergenic
TCCAAGGTGAGTGAAGAAAA+TGG 0.410425 7.3:-52965187 MS.gene023088:CDS
CGATTCCTAGGTGTTGGAAT+AGG 0.414583 7.3:-52967695 MS.gene023088:CDS
CCGAAGAGAAGAATGGGAAT+TGG 0.414724 7.3:-52965667 MS.gene023088:CDS
CAACATGCCATCGTATTTGA+TGG 0.418645 7.3:-52967828 MS.gene023088:CDS
CCTTTAGCATCAAAGATAAG+AGG 0.419532 7.3:-52965709 MS.gene023088:CDS
TGAGAAAGAAAATGGTTTGA+AGG 0.423047 7.3:-52965035 MS.gene023088:CDS
GGCAATGGCTGCCGGAAACT+TGG 0.426220 7.3:-52965398 MS.gene023088:CDS
AAATAAAGCTTCTGTTATCA+AGG 0.436402 7.3:-52966013 MS.gene023088:CDS
AGACCACCCTTGGGTCTTTG+TGG 0.443412 7.3:+52968041 None:intergenic
TGCACTTTCTGGATTGGCAA+TGG 0.443959 7.3:-52965413 MS.gene023088:CDS
AGGCTGTGCCGCTGGGATCA+TGG 0.445564 7.3:+52966625 None:intergenic
TACAGTTGAATCTTCCTCCT+TGG 0.446350 7.3:+52965162 None:intergenic
CGAAGAGAAGAATGGGAATT+GGG 0.451137 7.3:-52965666 MS.gene023088:CDS
TCTGGATTGGCAATGGCTGC+CGG 0.451266 7.3:-52965406 MS.gene023088:CDS
TTGTCTTTGTCATCAAATAG+AGG 0.451973 7.3:+52965121 None:intergenic
TGTATTATTTAGTATGCAGT+TGG 0.452225 7.3:-52965237 MS.gene023088:CDS
CATGGTGACAAGACCACCCT+TGG 0.459000 7.3:+52968031 None:intergenic
CTCTCTGCGTTAATTCTGAT+AGG 0.460782 7.3:-52966539 MS.gene023088:CDS
TCTTATGTGGGTCGATTCCT+AGG 0.462695 7.3:-52967707 MS.gene023088:CDS
TGCTGCTGATGAAGAAGAAA+TGG 0.464327 7.3:-52968078 MS.gene023088:CDS
ATCAGCAACACCAGGTCAAA+TGG 0.464768 7.3:-52966570 MS.gene023088:CDS
CATAATAGCTCTTACTGGAT+TGG 0.468144 7.3:-52966384 MS.gene023088:CDS
TTTATTGCAGATTCTTATGT+GGG 0.472925 7.3:-52967719 MS.gene023088:CDS
GGTTAGCTGTAGCAAAATGA+AGG 0.478653 7.3:+52967795 None:intergenic
CAAAGAACCAGCTTGTTCAC+TGG 0.480533 7.3:-52966248 MS.gene023088:CDS
TTGTTCCAACTGATAGACTA+AGG 0.481528 7.3:-52966124 MS.gene023088:intron
CTCTTCGGACCGATACTCAC+TGG 0.482336 7.3:+52965682 None:intergenic
TGAATTCAAGAATGGTGGTC+AGG 0.484071 7.3:-52965059 MS.gene023088:CDS
GCGTTAATTCTGATAGGAAT+CGG 0.488247 7.3:-52966533 MS.gene023088:CDS
AAGTATTATTGGGTTCTAGT+TGG 0.493290 7.3:-52965280 MS.gene023088:CDS
GATAAAATCATGAGTGCTGT+TGG 0.494209 7.3:+52966317 None:intergenic
GTGGGTCGATTCCTAGGTGT+TGG 0.496370 7.3:-52967701 MS.gene023088:CDS
ATCGGTCCGAAGAGAAGAAT+GGG 0.501114 7.3:-52965673 MS.gene023088:CDS
GTATATATCCAAGATCATCT+TGG 0.504086 7.3:-52966362 MS.gene023088:CDS
AGAAAGGAAGCAATCAGAAA+AGG 0.506371 7.3:-52965589 MS.gene023088:CDS
GTATTATTTAGTATGCAGTT+GGG 0.508088 7.3:-52965236 MS.gene023088:CDS
TATCGGTCCGAAGAGAAGAA+TGG 0.508999 7.3:-52965674 MS.gene023088:CDS
ACTTCAAGCCAAGGCAAAGA+AGG 0.518672 7.3:-52965340 MS.gene023088:CDS
TGTGAAATTGCTAGCTGCAA+AGG 0.520997 7.3:+52967757 None:intergenic
ATTCTGATAGGAATCGGAAA+TGG 0.527046 7.3:-52966527 MS.gene023088:CDS
GAGCTAACTGAATTCAAGAA+TGG 0.529507 7.3:-52965067 MS.gene023088:CDS
CATCAAATACGATGGCATGT+TGG 0.534665 7.3:+52967829 None:intergenic
GCACCTCAACTTGCTTTGGG+TGG 0.539724 7.3:-52965517 MS.gene023088:CDS
ACAATGTCTATTAACATTGG+AGG 0.542460 7.3:-52965868 MS.gene023088:CDS
GAAAGAAAATGGTTTGAAGG+AGG 0.543265 7.3:-52965032 MS.gene023088:CDS
CTTTAGCATCAAAGATAAGA+GGG 0.548696 7.3:-52965708 MS.gene023088:CDS
ATCACAATGTCTATTAACAT+TGG 0.557139 7.3:-52965871 MS.gene023088:CDS
ATTTATTGCTGAACCGTCTG+AGG 0.560005 7.3:+52965972 None:intergenic
GGATATTTGAATGATACTCA+TGG 0.561496 7.3:-52965568 MS.gene023088:CDS
ATATCCAAGATCATCTTGGT+TGG 0.566372 7.3:-52966358 MS.gene023088:CDS
GCAATAAAAGCACCAATCAA+AGG 0.569109 7.3:+52967734 None:intergenic
CAAGCCAAGGCAAAGAAGGA+TGG 0.574342 7.3:-52965336 MS.gene023088:CDS
AGTAACATTGCCATTTGACC+TGG 0.574353 7.3:+52966560 None:intergenic
ATGTACAGCCTTCAGCTGCA+TGG 0.574607 7.3:+52966591 None:intergenic
TCAAACTTTGAAATACCAGC+AGG 0.576488 7.3:-52965799 MS.gene023088:CDS
TAGTGATGAAACTAGTTCAA+AGG 0.581120 7.3:-52965095 MS.gene023088:CDS
ATGGTGACAAGACCACCCTT+GGG 0.581493 7.3:+52968032 None:intergenic
TGCAAAACCAGTGAACAAGC+TGG 0.582250 7.3:+52966241 None:intergenic
ATATACCTTAGTCTATCAGT+TGG 0.587521 7.3:+52966119 None:intergenic
TACAATTGATCAAGTGTCCA+AGG 0.587895 7.3:-52965203 MS.gene023088:CDS
AACATGCCATCGTATTTGAT+GGG 0.588204 7.3:-52967827 MS.gene023088:CDS
ACGGTTCAGCAATAAATCGT+TGG 0.590419 7.3:-52965966 MS.gene023088:CDS
AGAGGGAAACCAGTGAGTAT+CGG 0.593871 7.3:-52965691 MS.gene023088:CDS
TTATTAAAGTTATTCCATTG+TGG 0.594692 7.3:-52965903 MS.gene023088:CDS
CTTGCTAAGATTGCAAGTAC+AGG 0.596761 7.3:-52967860 MS.gene023088:CDS
GAGTGAAGAAAATGGTTCCA+AGG 0.598642 7.3:-52965179 MS.gene023088:CDS
GGCTGTACATCAGCAACACC+AGG 0.599010 7.3:-52966578 MS.gene023088:CDS
GATAAGATACCAATGATGAA+AGG 0.599602 7.3:+52968008 None:intergenic
CTAACTGAATTCAAGAATGG+TGG 0.605979 7.3:-52965064 MS.gene023088:CDS
CTGATAGGAATCGGAAATGG+TGG 0.614372 7.3:-52966524 MS.gene023088:CDS
TCTTTGTCATCAAATAGAGG+AGG 0.622833 7.3:+52965124 None:intergenic
AGCAAGAAAGAATAAGACAG+TGG 0.634801 7.3:+52966295 None:intergenic
TTACCATCACAAAATAGACT+CGG 0.635909 7.3:-52966153 MS.gene023088:CDS
GAACAAGATATAGCCTCAGA+CGG 0.653376 7.3:-52965985 MS.gene023088:CDS
GATACCAATGATGAAAGGCA+TGG 0.657609 7.3:+52968013 None:intergenic
GTGATTCCTGTTGACCACAA+TGG 0.658146 7.3:+52965889 None:intergenic
CTATTTGATGACAAAGACAA+AGG 0.660576 7.3:-52965118 MS.gene023088:CDS
TAAGATCCCATCAAATACGA+TGG 0.661640 7.3:+52967821 None:intergenic
ATACCACCCAAAGCAAGTTG+AGG 0.661833 7.3:+52965514 None:intergenic
TACAGGGAATGTCACTGATG+TGG 0.684676 7.3:-52966655 MS.gene023088:intron
AAGAACCTATTCCAACACCT+AGG 0.698940 7.3:+52967690 None:intergenic
AAACCACAAAGACCCAAGGG+TGG 0.721957 7.3:-52968044 MS.gene023088:CDS
TGAAGAAAATGGTTCCAAGG+AGG 0.742024 7.3:-52965176 MS.gene023088:CDS
TGTTGAAAATGTCTGCAATG+TGG 0.749104 7.3:-52965543 MS.gene023088:CDS
GTTAACAGCCATGATCCCAG+CGG 0.768220 7.3:-52966633 MS.gene023088:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTATTAAATATAATA+AGG + chr7.3:52965735-52965754 None:intergenic 0.0%
!!! AATTAATATTCTGAAATTAT+TGG - chr7.3:52966441-52966460 MS.gene023088:CDS 10.0%
!!! TTAAATTTTGATGTATAATA+TGG - chr7.3:52965211-52965230 MS.gene023088:CDS 10.0%
!! ATAATAAGGTAAGTTAATAA+CGG + chr7.3:52965721-52965740 None:intergenic 15.0%
!!! GTTTTTTAATTTTCTTCAAT+TGG - chr7.3:52967496-52967515 MS.gene023088:intron 15.0%
!! ACAAAATTAAGCTAAAAAGA+TGG + chr7.3:52967065-52967084 None:intergenic 20.0%
!! ACAAGAATCATATTATACAA+AGG - chr7.3:52966390-52966409 MS.gene023088:CDS 20.0%
!! ATACCTATTAACTTACAAAT+AGG - chr7.3:52965947-52965966 MS.gene023088:CDS 20.0%
!! ATTTGAAAAATAAGAAGAGA+CGG - chr7.3:52966111-52966130 MS.gene023088:intron 20.0%
!! CAATGGAATAACTTTAATAA+TGG + chr7.3:52967234-52967253 None:intergenic 20.0%
!! TAATAAGGTAAGTTAATAAC+GGG + chr7.3:52965720-52965739 None:intergenic 20.0%
!! TGATTTATTGAAGACTTATT+AGG - chr7.3:52966050-52966069 MS.gene023088:intron 20.0%
!! TTAATTGAATATACCAAGTT+TGG + chr7.3:52966427-52966446 None:intergenic 20.0%
!! TTATTAAAGTTATTCCATTG+TGG - chr7.3:52967234-52967253 MS.gene023088:intron 20.0%
!!! AATTATCTTTTCTATTCACT+TGG + chr7.3:52966669-52966688 None:intergenic 20.0%
!!! ATCACTTTTGAATCATAAAA+AGG + chr7.3:52966350-52966369 None:intergenic 20.0%
!!! ATCTTTTTAGCTTAATTTTG+TGG - chr7.3:52967064-52967083 MS.gene023088:intron 20.0%
!!! CTTTGGAAATATTTTTTAGT+TGG - chr7.3:52966704-52966723 MS.gene023088:intron 20.0%
!!! CTTTGTAATAAAACTCATTT+TGG + chr7.3:52967673-52967692 None:intergenic 20.0%
!!! GGTTAATTATTTTCATTTTC+AGG - chr7.3:52967096-52967115 MS.gene023088:intron 20.0%
!!! TCTGAAATTATTGGTATAAT+GGG - chr7.3:52966450-52966469 MS.gene023088:CDS 20.0%
!!! TTCTGAAATTATTGGTATAA+TGG - chr7.3:52966449-52966468 MS.gene023088:CDS 20.0%
! AAATAAAGCTTCTGTTATCA+AGG - chr7.3:52967124-52967143 MS.gene023088:intron 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr7.3:52965804-52965823 None:intergenic 25.0%
! AATAAGGTAAGTTAATAACG+GGG + chr7.3:52965719-52965738 None:intergenic 25.0%
! ACACCTATTTGTAAGTTAAT+AGG + chr7.3:52965953-52965972 None:intergenic 25.0%
! ATCACAATGTCTATTAACAT+TGG - chr7.3:52967266-52967285 MS.gene023088:intron 25.0%
! ATTAGGAATAGTTGAATTCA+TGG - chr7.3:52966067-52966086 MS.gene023088:intron 25.0%
! GATTCTGATAAATTATACTC+AGG - chr7.3:52966322-52966341 MS.gene023088:CDS 25.0%
! GTATTATTTAGTATGCAGTT+GGG - chr7.3:52967901-52967920 MS.gene023088:intron 25.0%
! TGAACTCAATATATGTATGT+AGG + chr7.3:52966237-52966256 None:intergenic 25.0%
! TGATATTTGCAGCATTAATA+TGG - chr7.3:52967378-52967397 MS.gene023088:intron 25.0%
! TGTATTATTTAGTATGCAGT+TGG - chr7.3:52967900-52967919 MS.gene023088:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr7.3:52965816-52965835 MS.gene023088:CDS 25.0%
! TTTATTGCAGATTCTTATGT+GGG - chr7.3:52965418-52965437 MS.gene023088:CDS 25.0%
!! ATTTTGTGATGGTAAAATTC+AGG + chr7.3:52966979-52966998 None:intergenic 25.0%
!! TGTGTAATTTTCACATAAAG+TGG + chr7.3:52966871-52966890 None:intergenic 25.0%
!! TTTTATTGCAGATTCTTATG+TGG - chr7.3:52965417-52965436 MS.gene023088:CDS 25.0%
!!! AAAACTCGATTTTTTAGTAC+AGG - chr7.3:52965651-52965670 MS.gene023088:CDS 25.0%
!!! AAACTCGATTTTTTAGTACA+GGG - chr7.3:52965652-52965671 MS.gene023088:CDS 25.0%
!!! AACCATTTTTTGACAACTTT+TGG + chr7.3:52965901-52965920 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr7.3:52965803-52965822 MS.gene023088:CDS 25.0%
!!! TTTTGACTTGAATATAGACA+TGG - chr7.3:52965546-52965565 MS.gene023088:CDS 25.0%
AAAACAATGGAGAGAGAAAA+AGG - chr7.3:52965829-52965848 MS.gene023088:CDS 30.0%
AAAAGAAGATACCAAGTTTC+CGG + chr7.3:52967753-52967772 None:intergenic 30.0%
ACAATGTCTATTAACATTGG+AGG - chr7.3:52967269-52967288 MS.gene023088:intron 30.0%
AGGAAAGAATCACAAATCAA+GGG + chr7.3:52966148-52966167 None:intergenic 30.0%
ATATACCTTAGTCTATCAGT+TGG + chr7.3:52967021-52967040 None:intergenic 30.0%
ATTAGGACTCTATATGTCTT+AGG - chr7.3:52966170-52966189 MS.gene023088:CDS 30.0%
ATTTCATGCTCTATAGCATT+TGG - chr7.3:52966637-52966656 MS.gene023088:CDS 30.0%
CTTTAGCATCAAAGATAAGA+GGG - chr7.3:52967429-52967448 MS.gene023088:intron 30.0%
GAAAAGGCGATTTAATTAAC+TGG - chr7.3:52965613-52965632 MS.gene023088:CDS 30.0%
GATAAGATACCAATGATGAA+AGG + chr7.3:52965132-52965151 None:intergenic 30.0%
GGATATTTGAATGATACTCA+TGG - chr7.3:52967569-52967588 MS.gene023088:intron 30.0%
GTATATATCCAAGATCATCT+TGG - chr7.3:52966775-52966794 MS.gene023088:intron 30.0%
GTCCAAAAGTTGTCAAAAAA+TGG - chr7.3:52965896-52965915 MS.gene023088:CDS 30.0%
TAGTGATGAAACTAGTTCAA+AGG - chr7.3:52968042-52968061 MS.gene023088:CDS 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr7.3:52965778-52965797 None:intergenic 30.0%
TCGTTTCGACAAGTATTATT+GGG - chr7.3:52967847-52967866 MS.gene023088:CDS 30.0%
TGAGAAAGAAAATGGTTTGA+AGG - chr7.3:52968102-52968121 MS.gene023088:CDS 30.0%
TTACCATCACAAAATAGACT+CGG - chr7.3:52966984-52967003 MS.gene023088:intron 30.0%
TTCCAAAGCTCTATTGTTAT+TGG + chr7.3:52966692-52966711 None:intergenic 30.0%
TTCCAATAACAATAGAGCTT+TGG - chr7.3:52966687-52966706 MS.gene023088:intron 30.0%
TTGTCTTTGTCATCAAATAG+AGG + chr7.3:52968019-52968038 None:intergenic 30.0%
TTGTGATTCTTTCCTCAATT+AGG - chr7.3:52966153-52966172 MS.gene023088:CDS 30.0%
! AAGTATTATTGGGTTCTAGT+TGG - chr7.3:52967857-52967876 MS.gene023088:CDS 30.0%
! ATAATGGGAATTGTTGTTAC+AGG - chr7.3:52966465-52966484 MS.gene023088:CDS 30.0%
! CTATTTGATGACAAAGACAA+AGG - chr7.3:52968019-52968038 MS.gene023088:CDS 30.0%
! TAATGGGAATTGTTGTTACA+GGG - chr7.3:52966466-52966485 MS.gene023088:CDS 30.0%
! TGGAAGTTTTCTGTTCTTAT+AGG + chr7.3:52966938-52966957 None:intergenic 30.0%
!! AATTCAGGTGAAGTTTTATG+TGG + chr7.3:52966964-52966983 None:intergenic 30.0%
!! CAAAGGATATGAGAAGTATT+TGG + chr7.3:52965366-52965385 None:intergenic 30.0%
!!! ATTGTGATTGTTTTGATTGC+AGG - chr7.3:52965244-52965263 MS.gene023088:CDS 30.0%
!!! CAGCAATTTTTGAGACTATA+AGG - chr7.3:52967525-52967544 MS.gene023088:intron 30.0%
!!! TTGTGATTGTTTTGATTGCA+GGG - chr7.3:52965245-52965264 MS.gene023088:CDS 30.0%
!!! TTTTGAGACTATAAGGAGAA+AGG - chr7.3:52967532-52967551 MS.gene023088:intron 30.0%
AAACACACTGCAATGAAAGA+TGG + chr7.3:52965518-52965537 None:intergenic 35.0%
AACATGCCATCGTATTTGAT+GGG - chr7.3:52965310-52965329 MS.gene023088:CDS 35.0%
AGAAAGGAAGCAATCAGAAA+AGG - chr7.3:52967548-52967567 MS.gene023088:intron 35.0%
AGCAAGAAAGAATAAGACAG+TGG + chr7.3:52966845-52966864 None:intergenic 35.0%
AGCAATTTCACACCTTTGAT+TGG - chr7.3:52965391-52965410 MS.gene023088:CDS 35.0%
ATAACAGAAAAAGATCCTGC+TGG + chr7.3:52967356-52967375 None:intergenic 35.0%
ATATCCAAGATCATCTTGGT+TGG - chr7.3:52966779-52966798 MS.gene023088:intron 35.0%
ATCAAATACGATGGCATGTT+GGG + chr7.3:52965310-52965329 None:intergenic 35.0%
ATGTGGTGTGTTCGATATAT+CGG - chr7.3:52966202-52966221 MS.gene023088:CDS 35.0%
ATTCTGATAGGAATCGGAAA+TGG - chr7.3:52966610-52966629 MS.gene023088:CDS 35.0%
CATAATAGCTCTTACTGGAT+TGG - chr7.3:52966753-52966772 MS.gene023088:intron 35.0%
CCTCTTATCTTTGATGCTAA+AGG + chr7.3:52967431-52967450 None:intergenic 35.0%
CCTTTAGCATCAAAGATAAG+AGG - chr7.3:52967428-52967447 MS.gene023088:intron 35.0%
CTAACTGAATTCAAGAATGG+TGG - chr7.3:52968073-52968092 MS.gene023088:CDS 35.0%
GAAACACTAGACATAGTCTT+TGG + chr7.3:52967701-52967720 None:intergenic 35.0%
GAAAGAAAATGGTTTGAAGG+AGG - chr7.3:52968105-52968124 MS.gene023088:CDS 35.0%
GACATATAGAGTCCTAATTG+AGG + chr7.3:52966168-52966187 None:intergenic 35.0%
GAGCTAACTGAATTCAAGAA+TGG - chr7.3:52968070-52968089 MS.gene023088:CDS 35.0%
GAGGAAAGAATCACAAATCA+AGG + chr7.3:52966149-52966168 None:intergenic 35.0%
GATCATCTTGGTTGGAAAAT+TGG - chr7.3:52966787-52966806 MS.gene023088:intron 35.0%
GCGTTAATTCTGATAGGAAT+CGG - chr7.3:52966604-52966623 MS.gene023088:CDS 35.0%
GGAAAAAGTAACACCAAACT+TGG - chr7.3:52966411-52966430 MS.gene023088:CDS 35.0%
GGAAAGAATCACAAATCAAG+GGG + chr7.3:52966147-52966166 None:intergenic 35.0%
GTCGTTTCGACAAGTATTAT+TGG - chr7.3:52967846-52967865 MS.gene023088:CDS 35.0%
TAAGATCCCATCAAATACGA+TGG + chr7.3:52965319-52965338 None:intergenic 35.0%
TACAATTGATCAAGTGTCCA+AGG - chr7.3:52967934-52967953 MS.gene023088:intron 35.0%
TCTGTCATAATAGCTCTTAC+TGG - chr7.3:52966748-52966767 MS.gene023088:intron 35.0%
TCTTTGTCATCAAATAGAGG+AGG + chr7.3:52968016-52968035 None:intergenic 35.0%
TGAAGTGATATGTCTGTCTA+AGG + chr7.3:52967321-52967340 None:intergenic 35.0%
TGTTGAAAATGTCTGCAATG+TGG - chr7.3:52967594-52967613 MS.gene023088:intron 35.0%
TTGGACACTTGATCAATTGT+AGG + chr7.3:52967935-52967954 None:intergenic 35.0%
TTGTTCCAACTGATAGACTA+AGG - chr7.3:52967013-52967032 MS.gene023088:intron 35.0%
! AGGTTCTTTTATCAGTTGCA+TGG - chr7.3:52965462-52965481 MS.gene023088:CDS 35.0%
! GATAAAATCATGAGTGCTGT+TGG + chr7.3:52966823-52966842 None:intergenic 35.0%
! GCTGAAGCATTCAATGTTAT+TGG - chr7.3:52967647-52967666 MS.gene023088:intron 35.0%
! TTTTCCAACCAAGATGATCT+TGG + chr7.3:52966786-52966805 None:intergenic 35.0%
!! CTTGGTTGGAAAATTGGTTT+TGG - chr7.3:52966793-52966812 MS.gene023088:intron 35.0%
!! GCAATAAAAGCACCAATCAA+AGG + chr7.3:52965406-52965425 None:intergenic 35.0%
!! TCAAACTTTGAAATACCAGC+AGG - chr7.3:52967338-52967357 MS.gene023088:intron 35.0%
AAAAACGCTACTTCAAGCCA+AGG - chr7.3:52967788-52967807 MS.gene023088:CDS 40.0%
AAATCCATCCTTCTTTGCCT+TGG + chr7.3:52967808-52967827 None:intergenic 40.0%
AAGAACCTATTCCAACACCT+AGG + chr7.3:52965450-52965469 None:intergenic 40.0%
ACAAAAACCACAAAGACCCA+AGG - chr7.3:52965089-52965108 MS.gene023088:CDS 40.0%
ACGGTTCAGCAATAAATCGT+TGG - chr7.3:52967171-52967190 MS.gene023088:intron 40.0%
AGTGTTTCTTCTGCACTTTC+TGG - chr7.3:52967713-52967732 MS.gene023088:CDS 40.0%
ATTAACATTGGAGGCTCGTT+TGG - chr7.3:52967278-52967297 MS.gene023088:intron 40.0%
ATTTATTGCTGAACCGTCTG+AGG + chr7.3:52967168-52967187 None:intergenic 40.0%
CAAAAACCACAAAGACCCAA+GGG - chr7.3:52965090-52965109 MS.gene023088:CDS 40.0%
CAACATGCCATCGTATTTGA+TGG - chr7.3:52965309-52965328 MS.gene023088:CDS 40.0%
CATCAAATACGATGGCATGT+TGG + chr7.3:52965311-52965330 None:intergenic 40.0%
CCAATTCCCATTCTTCTCTT+CGG + chr7.3:52967473-52967492 None:intergenic 40.0%
CGAAGAGAAGAATGGGAATT+GGG - chr7.3:52967471-52967490 MS.gene023088:intron 40.0%
CTCTCTGCGTTAATTCTGAT+AGG - chr7.3:52966598-52966617 MS.gene023088:CDS 40.0%
CTTGCTAAGATTGCAAGTAC+AGG - chr7.3:52965277-52965296 MS.gene023088:CDS 40.0%
GAACAAGATATAGCCTCAGA+CGG - chr7.3:52967152-52967171 MS.gene023088:intron 40.0%
GAGTGAAGAAAATGGTTCCA+AGG - chr7.3:52967958-52967977 MS.gene023088:intron 40.0%
GATACCAATGATGAAAGGCA+TGG + chr7.3:52965127-52965146 None:intergenic 40.0%
GTCTTAGGCAAGACAATATG+TGG - chr7.3:52966185-52966204 MS.gene023088:CDS 40.0%
GTTATTCCATTGTGGTCAAC+AGG - chr7.3:52967242-52967261 MS.gene023088:intron 40.0%
TACAGTTGAATCTTCCTCCT+TGG + chr7.3:52967978-52967997 None:intergenic 40.0%
TCCAAGGTGAGTGAAGAAAA+TGG - chr7.3:52967950-52967969 MS.gene023088:intron 40.0%
TGAAGAAAATGGTTCCAAGG+AGG - chr7.3:52967961-52967980 MS.gene023088:intron 40.0%
TGAATATAGACATGGCCACA+TGG - chr7.3:52965554-52965573 MS.gene023088:CDS 40.0%
TGAATTCAAGAATGGTGGTC+AGG - chr7.3:52968078-52968097 MS.gene023088:CDS 40.0%
TGCTGCTGATGAAGAAGAAA+TGG - chr7.3:52965059-52965078 MS.gene023088:CDS 40.0%
TGTGAAATTGCTAGCTGCAA+AGG + chr7.3:52965383-52965402 None:intergenic 40.0%
TTAGTATGCAGTTGGGCTTA+TGG - chr7.3:52967908-52967927 MS.gene023088:intron 40.0%
TTCTTCTGCACTTTCTGGAT+TGG - chr7.3:52967718-52967737 MS.gene023088:CDS 40.0%
! ACCATTTTCTTCACTCACCT+TGG + chr7.3:52967954-52967973 None:intergenic 40.0%
! AGGTAAGTTAATAACGGGGA+CGG + chr7.3:52965715-52965734 None:intergenic 40.0%
! AGTAACATTGCCATTTGACC+TGG + chr7.3:52966580-52966599 None:intergenic 40.0%
! GATCCGAGTCTATTTTGTGA+TGG + chr7.3:52966990-52967009 None:intergenic 40.0%
! GGTTAGCTGTAGCAAAATGA+AGG + chr7.3:52965345-52965364 None:intergenic 40.0%
! TTAATTTTGTGGTTCGTGCG+TGG - chr7.3:52967075-52967094 MS.gene023088:intron 40.0%
!! GGTCAGGTTGAGAAAGAAAA+TGG - chr7.3:52968094-52968113 MS.gene023088:CDS 40.0%
!! GGTGAAGTTTTATGTGGCAA+TGG + chr7.3:52966958-52966977 None:intergenic 40.0%
!!! CTCGATTTTTTAGTACAGGG+CGG - chr7.3:52965655-52965674 MS.gene023088:CDS 40.0%
!!! TCGATTTTTTAGTACAGGGC+GGG - chr7.3:52965656-52965675 MS.gene023088:CDS 40.0%
ACTTCAAGCCAAGGCAAAGA+AGG - chr7.3:52967797-52967816 MS.gene023088:CDS 45.0%
AGAGGGAAACCAGTGAGTAT+CGG - chr7.3:52967446-52967465 MS.gene023088:intron 45.0%
ATACCACCCAAAGCAAGTTG+AGG + chr7.3:52967626-52967645 None:intergenic 45.0%
ATCAGCAACACCAGGTCAAA+TGG - chr7.3:52966567-52966586 MS.gene023088:CDS 45.0%
ATCGGTCCGAAGAGAAGAAT+GGG - chr7.3:52967464-52967483 MS.gene023088:intron 45.0%
CCGAAGAGAAGAATGGGAAT+TGG - chr7.3:52967470-52967489 MS.gene023088:intron 45.0%
CTGATAGGAATCGGAAATGG+TGG - chr7.3:52966613-52966632 MS.gene023088:CDS 45.0%
GAATTCATGGCTAAGTCCCT+GGG - chr7.3:52966080-52966099 MS.gene023088:intron 45.0%
GTCACCATGCCTTTCATCAT+TGG - chr7.3:52965120-52965139 MS.gene023088:CDS 45.0%
GTGATTCCTGTTGACCACAA+TGG + chr7.3:52967251-52967270 None:intergenic 45.0%
TACAGGGAATGTCACTGATG+TGG - chr7.3:52966482-52966501 MS.gene023088:CDS 45.0%
TATCGGTCCGAAGAGAAGAA+TGG - chr7.3:52967463-52967482 MS.gene023088:intron 45.0%
TCAGCTGCATGGATGCAAAA+AGG + chr7.3:52966538-52966557 None:intergenic 45.0%
TGAATTCATGGCTAAGTCCC+TGG - chr7.3:52966079-52966098 MS.gene023088:intron 45.0%
TGCAAAACCAGTGAACAAGC+TGG + chr7.3:52966899-52966918 None:intergenic 45.0%
TTTCAAATCACTGTCGCCCA+GGG + chr7.3:52966099-52966118 None:intergenic 45.0%
! CAAAGAACCAGCTTGTTCAC+TGG - chr7.3:52966889-52966908 MS.gene023088:intron 45.0%
! CCTTTTCCCCGTTAAATTCG+GGG + chr7.3:52965600-52965619 None:intergenic 45.0%
! CGCCTTTTCCCCGTTAAATT+CGG + chr7.3:52965602-52965621 None:intergenic 45.0%
! CTTGCACCTCAACTTGCTTT+GGG - chr7.3:52967617-52967636 MS.gene023088:intron 45.0%
! GCCTTTTCCCCGTTAAATTC+GGG + chr7.3:52965601-52965620 None:intergenic 45.0%
! GGTAAGTTAATAACGGGGAC+GGG + chr7.3:52965714-52965733 None:intergenic 45.0%
! GTAAGTTAATAACGGGGACG+GGG + chr7.3:52965713-52965732 None:intergenic 45.0%
! TCTTATGTGGGTCGATTCCT+AGG - chr7.3:52965430-52965449 MS.gene023088:CDS 45.0%
! TTTTCAAATCACTGTCGCCC+AGG + chr7.3:52966100-52966119 None:intergenic 45.0%
! TTTTGCATCCATGCAGCTGA+AGG - chr7.3:52966538-52966557 MS.gene023088:CDS 45.0%
!! CGATTCCTAGGTGTTGGAAT+AGG - chr7.3:52965442-52965461 MS.gene023088:CDS 45.0%
!! TGCACTTTCTGGATTGGCAA+TGG - chr7.3:52967724-52967743 MS.gene023088:CDS 45.0%
AAACCACAAAGACCCAAGGG+TGG - chr7.3:52965093-52965112 MS.gene023088:CDS 50.0%
ATGGTGACAAGACCACCCTT+GGG + chr7.3:52965108-52965127 None:intergenic 50.0%
ATGTACAGCCTTCAGCTGCA+TGG + chr7.3:52966549-52966568 None:intergenic 50.0%
CAAGCCAAGGCAAAGAAGGA+TGG - chr7.3:52967801-52967820 MS.gene023088:CDS 50.0%
CCCCGAATTTAACGGGGAAA+AGG - chr7.3:52965597-52965616 MS.gene023088:CDS 50.0%
GCTGCATGGATGCAAAAAGG+AGG + chr7.3:52966535-52966554 None:intergenic 50.0%
GTTAACAGCCATGATCCCAG+CGG - chr7.3:52966504-52966523 MS.gene023088:CDS 50.0%
TTTCCCCGTTAAATTCGGGG+CGG + chr7.3:52965597-52965616 None:intergenic 50.0%
! GCTTGCACCTCAACTTGCTT+TGG - chr7.3:52967616-52967635 MS.gene023088:intron 50.0%
AGACCACCCTTGGGTCTTTG+TGG + chr7.3:52965099-52965118 None:intergenic 55.0%
CATGGTGACAAGACCACCCT+TGG + chr7.3:52965109-52965128 None:intergenic 55.0%
CCTTCCGCCCCGAATTTAAC+GGG - chr7.3:52965590-52965609 MS.gene023088:CDS 55.0%
CTCTTCGGACCGATACTCAC+TGG + chr7.3:52967458-52967477 None:intergenic 55.0%
CTTCCGCCCCGAATTTAACG+GGG - chr7.3:52965591-52965610 MS.gene023088:CDS 55.0%
GCCTTCCGCCCCGAATTTAA+CGG - chr7.3:52965589-52965608 MS.gene023088:CDS 55.0%
GGCCAATTCTAGACGCCATG+TGG + chr7.3:52965572-52965591 None:intergenic 55.0%
GGCTGTACATCAGCAACACC+AGG - chr7.3:52966559-52966578 MS.gene023088:CDS 55.0%
TTTAGTACAGGGCGGGACCA+GGG - chr7.3:52965663-52965682 MS.gene023088:CDS 55.0%
! AAAAAGGAGGCTGTGCCGCT+GGG + chr7.3:52966522-52966541 None:intergenic 55.0%
! AGTTAATAACGGGGACGGGG+TGG + chr7.3:52965710-52965729 None:intergenic 55.0%
! GCACCTCAACTTGCTTTGGG+TGG - chr7.3:52967620-52967639 MS.gene023088:intron 55.0%
! GGCCACATGGCGTCTAGAAT+TGG - chr7.3:52965567-52965586 MS.gene023088:CDS 55.0%
! GTGGGTCGATTCCTAGGTGT+TGG - chr7.3:52965436-52965455 MS.gene023088:CDS 55.0%
! GTTAATAACGGGGACGGGGT+GGG + chr7.3:52965709-52965728 None:intergenic 55.0%
! TTTTAGTACAGGGCGGGACC+AGG - chr7.3:52965662-52965681 MS.gene023088:CDS 55.0%
!! TCTGGATTGGCAATGGCTGC+CGG - chr7.3:52967731-52967750 MS.gene023088:CDS 55.0%
CAAAAAGGAGGCTGTGCCGC+TGG + chr7.3:52966523-52966542 None:intergenic 60.0%
CCCGTTAAATTCGGGGCGGA+AGG + chr7.3:52965593-52965612 None:intergenic 60.0%
GGCAATGGCTGCCGGAAACT+TGG - chr7.3:52967739-52967758 MS.gene023088:CDS 60.0%
GGGGCGGGTATAATCATCCC+TGG + chr7.3:52965683-52965702 None:intergenic 60.0%
! AGGCTGTGCCGCTGGGATCA+TGG + chr7.3:52966515-52966534 None:intergenic 65.0%
TAACGGGGACGGGGTGGGTG+CGG + chr7.3:52965704-52965723 None:intergenic 70.0%
AACGGGGACGGGGTGGGTGC+GGG + chr7.3:52965703-52965722 None:intergenic 75.0%
! ACGGGGACGGGGTGGGTGCG+GGG + chr7.3:52965702-52965721 None:intergenic 80.0%
! GGACGGGGTGGGTGCGGGGC+GGG + chr7.3:52965698-52965717 None:intergenic 85.0%
! GGGACGGGGTGGGTGCGGGG+CGG + chr7.3:52965699-52965718 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 52965027 52968132 52965027 ID=MS.gene023088
chr7.3 mRNA 52965027 52968132 52965027 ID=MS.gene023088.t1;Parent=MS.gene023088
chr7.3 exon 52968018 52968132 52968018 ID=MS.gene023088.t1.exon1;Parent=MS.gene023088.t1
chr7.3 CDS 52968018 52968132 52968018 ID=cds.MS.gene023088.t1;Parent=MS.gene023088.t1
chr7.3 exon 52967676 52967893 52967676 ID=MS.gene023088.t1.exon2;Parent=MS.gene023088.t1
chr7.3 CDS 52967676 52967893 52967676 ID=cds.MS.gene023088.t1;Parent=MS.gene023088.t1
chr7.3 exon 52966125 52966672 52966125 ID=MS.gene023088.t1.exon3;Parent=MS.gene023088.t1
chr7.3 CDS 52966125 52966672 52966125 ID=cds.MS.gene023088.t1;Parent=MS.gene023088.t1
chr7.3 exon 52965027 52966041 52965027 ID=MS.gene023088.t1.exon4;Parent=MS.gene023088.t1
chr7.3 CDS 52965027 52966041 52965027 ID=cds.MS.gene023088.t1;Parent=MS.gene023088.t1
Gene Sequence

>MS.gene023088

ATGGACAAGGAACTTCAACTTTGTTCAGTTGATGCTGCTGATGAAGAAGAAATGGTTTCTCAACAAAAACCACAAAGACCCAAGGGTGGTCTTGTCACCATGCCTTTCATCATTGGTATCTTATCAATGACTTGCATGCATTTTTATTTTATTTTATTTTATTTTATTTTTACTTTTAATGAGCTTAAATTTTGATGTATAATATGGTTTTGTTGTTATTGTGATTGTTTTGATTGCAGGGAATGAAGCACTTGCTAAGATTGCAAGTACAGGACTAATGCCCAACATGCCATCGTATTTGATGGGATCTTACAACCTTCATTTTGCTACAGCTAACCAAATACTTCTCATATCCTTTGCAGCTAGCAATTTCACACCTTTGATTGGTGCTTTTATTGCAGATTCTTATGTGGGTCGATTCCTAGGTGTTGGAATAGGTTCTTTTATCAGTTGCATGGTAATCTTATACATTTAGTTTTGATTTACTTCCATCTTTCATTGCAGTGTGTTTTTCTTATCTTTTGACTTGAATATAGACATGGCCACATGGCGTCTAGAATTGGCCTTCCGCCCCGAATTTAACGGGGAAAAGGCGATTTAATTAACTGGTTGTGCTGATGCGAGAAAACTCGATTTTTTAGTACAGGGCGGGACCAGGGATGATTATACCCGCCCCGCACCCACCCCGTCCCCGTTATTAACTTACCTTATTATATTTAATAATATTAGAGTAATGATATTTTGACATCCATTTGATGACAACTTTGTTGACAACCTTGTTTTTCTCACTTCTTATTGGTCAAAAACAATGGAGAGAGAAAAAGGAAGAGAGAGAATAACAACATCATGTGAGTATGAGAGAGAAAGTTGTCCAAAAGTTGTCAAAAAATGGTTGTCAAAATATCATTTCTCATAATATTATACCTATTAACTTACAAATAGGTGTCAATCACTTTTAATATATTGTTACTCTATTGAAACATGTTTATTAGAGTTATCTTACTTTTTTGAAAAAGATTTATTTGATTTATTGAAGACTTATTAGGAATAGTTGAATTCATGGCTAAGTCCCTGGGCGACAGTGATTTGAAAAATAAGAAGAGACGGATAATGAATACCCCTTGATTTGTGATTCTTTCCTCAATTAGGACTCTATATGTCTTAGGCAAGACAATATGTGGTGTGTTCGATATATCGGAGATCATAGCCTACATACATATATTGAGTTCATATCAATTAACTAAATATTTAATCGATTATTATATATACTAGTTAAATAAAATATTCAACTATGAGATTCTGATAAATTATACTCAGGTTCCTTTTTATGATTCAAAAGTGATATATATGTTCACTTGTATGAACAAGAATCATATTATACAAAGGAAAAAGTAACACCAAACTTGGTATATTCAATTAATATTCTGAAATTATTGGTATAATGGGAATTGTTGTTACAGGGAATGTCACTGATGTGGTTAACAGCCATGATCCCAGCGGCACAGCCTCCTTTTTGCATCCATGCAGCTGAAGGCTGTACATCAGCAACACCAGGTCAAATGGCAATGTTACTCTCTGCGTTAATTCTGATAGGAATCGGAAATGGTGGTATTTCATGCTCTATAGCATTTGGTGCTGACCAAGTGAATAGAAAAGATAATTCCAATAACAATAGAGCTTTGGAAATATTTTTTAGTTGGTATTACGCTTTCACAACTATTTCTGTCATAATAGCTCTTACTGGATTGGTATATATCCAAGATCATCTTGGTTGGAAAATTGGTTTTGGTGTTCCAACAGCACTCATGATTTTATCCACTGTCTTATTCTTTCTTGCTTCTCCACTTTATGTGAAAATTACACAAAGAACCAGCTTGTTCACTGGTTTTGCACAAGTATTTATTGCTGCCTATAAGAACAGAAAACTTCCATTGCCACATAAAACTTCACCTGAATTTTACCATCACAAAATAGACTCGGATCTTGTTGTTCCAACTGATAGACTAAGGTATATATATAGAATCAATTTACTATACCATCTTTTTAGCTTAATTTTGTGGTTCGTGCGTGGTTAATTATTTTCATTTTCAGGTTTCTAAATAAAGCTTCTGTTATCAAGGATCGTGAACAAGATATAGCCTCAGACGGTTCAGCAATAAATCGTTGGAGTCTTTGCACAGTAGATCAAGTTGAAGAATTGAAAGCCATTATTAAAGTTATTCCATTGTGGTCAACAGGAATCACAATGTCTATTAACATTGGAGGCTCGTTTGGATTGCTGCAAGCTAAATCCTTAGACAGACATATCACTTCAAACTTTGAAATACCAGCAGGATCTTTTTCTGTTATCTTGATATTTGCAGCATTAATATGGATAATTATCTATGATCGTGTTCTTATTCCTTTAGCATCAAAGATAAGAGGGAAACCAGTGAGTATCGGTCCGAAGAGAAGAATGGGAATTGGGTTGTTTTTTAATTTTCTTCAATTGGTAGTTGCAGCAATTTTTGAGACTATAAGGAGAAAGGAAGCAATCAGAAAAGGATATTTGAATGATACTCATGGAGTGTTGAAAATGTCTGCAATGTGGCTTGCACCTCAACTTGCTTTGGGTGGTATAGCTGAAGCATTCAATGTTATTGGCCAAAATGAGTTTTATTACAAAGAGTTTCCAAAGACTATGTCTAGTGTTTCTTCTGCACTTTCTGGATTGGCAATGGCTGCCGGAAACTTGGTATCTTCTTTTGTACTCAGCGTTATAAAAAACGCTACTTCAAGCCAAGGCAAAGAAGGATGGATTTCTGATAATATTAACAAGAGTCGTTTCGACAAGTATTATTGGGTTCTAGTTGGAATTAATGTTCTGAATCTACTGTATTATTTAGTATGCAGTTGGGCTTATGGACCTACAATTGATCAAGTGTCCAAGGTGAGTGAAGAAAATGGTTCCAAGGAGGAAGATTCAACTGTATTCAAGCAAATGAATCCTCCTCTATTTGATGACAAAGACAAAGGTAGTGATGAAACTAGTTCAAAGGAGAAAGAGCTAACTGAATTCAAGAATGGTGGTCAGGTTGAGAAAGAAAATGGTTTGAAGGAGGAATAG

Protein sequence

>MS.gene023088.t1

MDKELQLCSVDAADEEEMVSQQKPQRPKGGLVTMPFIIGNEALAKIASTGLMPNMPSYLMGSYNLHFATANQILLISFAASNFTPLIGAFIADSYVGRFLGVGIGSFISCMGMSLMWLTAMIPAAQPPFCIHAAEGCTSATPGQMAMLLSALILIGIGNGGISCSIAFGADQVNRKDNSNNNRALEIFFSWYYAFTTISVIIALTGLVYIQDHLGWKIGFGVPTALMILSTVLFFLASPLYVKITQRTSLFTGFAQVFIAAYKNRKLPLPHKTSPEFYHHKIDSDLVVPTDRLRFLNKASVIKDREQDIASDGSAINRWSLCTVDQVEELKAIIKVIPLWSTGITMSINIGGSFGLLQAKSLDRHITSNFEIPAGSFSVILIFAALIWIIIYDRVLIPLASKIRGKPVSIGPKRRMGIGLFFNFLQLVVAAIFETIRRKEAIRKGYLNDTHGVLKMSAMWLAPQLALGGIAEAFNVIGQNEFYYKEFPKTMSSVSSALSGLAMAAGNLVSSFVLSVIKNATSSQGKEGWISDNINKSRFDKYYWVLVGINVLNLLYYLVCSWAYGPTIDQVSKVSEENGSKEEDSTVFKQMNPPLFDDKDKGSDETSSKEKELTEFKNGGQVEKENGLKEE