AlfalfaGEDB | MS.gene23175

M. sativa cultivar XinJiangDaYe / MS.gene23175

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23175.t1	XP_003597726.1	82.1	638	110	2	1	636	1	636	3.60E-286	993.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23175.t1	Q9M817	53.4	581	262	6	15	587	9	588	8.2e-178	625.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23175.t1	Q2HU45	82.1	638	110	2	1	636	1	636	2.6e-286	993.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000889	MS.gene23175	PPI
MS.gene00573	MS.gene23175	PPI
MS.gene010998	MS.gene23175	PPI
MS.gene011513	MS.gene23175	PPI
MS.gene011636	MS.gene23175	PPI
MS.gene015321	MS.gene23175	PPI
MS.gene015450	MS.gene23175	PPI
MS.gene021879	MS.gene23175	PPI
MS.gene023088	MS.gene23175	PPI
MS.gene023238	MS.gene23175	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene23175.t1	MTR_2g101610	82.915	638	105	2	1	636	1	636	1073
MS.gene23175.t1	MTR_2g101590	81.975	638	110	3	1	636	1	635	1058
MS.gene23175.t1	MTR_2g101560	83.725	639	99	3	1	636	1	637	1039
MS.gene23175.t1	MTR_2g101640	76.959	638	134	4	1	636	1	627	1018
MS.gene23175.t1	MTR_4g011280	66.010	609	187	6	1	602	1	596	813
MS.gene23175.t1	MTR_1g057460	67.016	573	166	4	1	573	24	573	791
MS.gene23175.t1	MTR_1g057460	68.023	516	148	2	58	573	4	502	731
MS.gene23175.t1	MTR_0236s0050	68.992	516	143	4	58	573	4	502	714
MS.gene23175.t1	MTR_2g101650	55.670	582	249	5	1	578	1	577	682
MS.gene23175.t1	MTR_8g103233	47.660	577	285	6	16	578	6	579	534

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23175.t1	AT1G52190	53.356	581	262	6	15	587	9	588	0.0	651
MS.gene23175.t1	AT3G16180	53.242	586	265	8	11	589	6	589	0.0	644
MS.gene23175.t1	AT1G68570	37.774	593	350	8	9	592	5	587	1.58e-126	386
MS.gene23175.t1	AT1G69870	36.000	575	353	8	18	583	42	610	3.79e-126	386
MS.gene23175.t1	AT5G62680	36.532	594	359	12	9	587	25	615	2.48e-116	360
MS.gene23175.t1	AT1G68570	36.814	565	334	9	39	592	5	557	1.01e-113	352
MS.gene23175.t1	AT3G47960	35.726	585	346	10	10	584	50	614	4.19e-111	347
MS.gene23175.t1	AT1G27080	33.333	594	358	14	24	607	11	576	1.31e-109	342
MS.gene23175.t1	AT1G18880	35.466	547	336	9	30	564	22	563	1.99e-109	342
MS.gene23175.t1	AT1G62200	36.953	571	335	10	1	560	25	581	2.72e-107	336

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Find 122 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGATACCAAGTTTC+CGG	0.371463	7.2:+51159515	None:intergenic
AAAATATTTCCAAAGCTCTA+TGG	0.305384	7.2:+51160569	None:intergenic
AAACCACAAAGACCCAAGGG+TGG	0.721957	7.2:-51161928	MS.gene23175:CDS
AAATAAAGCTTCTGTTATCA+AGG	0.436402	7.2:-51160141	MS.gene23175:CDS
AAATCCATCCTTCTTTGCCT+TGG	0.397035	7.2:+51159460	None:intergenic
AACATGCCATCGTATTTGAT+GGG	0.588204	7.2:-51161721	MS.gene23175:CDS
AAGAACCTATTCCAACACCT+AGG	0.698940	7.2:+51161584	None:intergenic
AAGTATTATTGGGTTCTAGT+TGG	0.493290	7.2:-51159408	MS.gene23175:CDS
AATGAAATAAAATATGGACA+AGG	0.705133	7.2:-51162007	None:intergenic
ACAATGTCTATTAACATTGG+AGG	0.542460	7.2:-51159996	MS.gene23175:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAGATACCAAGTTTC+CGG	+	chr7.2:51161622-51161641	None:intergenic	30.0%
AATAAGGTAAGTTAATAGCG+GGG	+	chr7.2:51159824-51159843	None:intergenic	30.0%
ACAATGTCTATTAACATTGG+AGG	-	chr7.2:51161138-51161157	MS.gene23175:intron	30.0%
ATATACCTTAGTCTATCAGT+TGG	+	chr7.2:51160890-51160909	None:intergenic	30.0%
ATTTCATGCTCTATAGCATT+TGG	-	chr7.2:51160506-51160525	MS.gene23175:CDS	30.0%
CTTTAGCATCAAAGATAAGA+GGG	-	chr7.2:51161298-51161317	MS.gene23175:intron	30.0%
GAGTTAACTGAATTCAAGAA+TGG	-	chr7.2:51161936-51161955	MS.gene23175:CDS	30.0%
GATAAGATACCAATGATGAA+AGG	+	chr7.2:51159245-51159264	None:intergenic	30.0%
GATATGAACTCAATATACGT+AGG	+	chr7.2:51160097-51160116	None:intergenic	30.0%
GGATATTTGAATGATACTCA+TGG	-	chr7.2:51161438-51161457	MS.gene23175:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	51159140	51162016	51159140	ID=MS.gene23175
chr7.2	mRNA	51159140	51162016	51159140	ID=MS.gene23175.t1;Parent=MS.gene23175
chr7.2	exon	51161902	51162016	51161902	ID=MS.gene23175.t1.exon1;Parent=MS.gene23175.t1
chr7.2	CDS	51161902	51162016	51161902	ID=cds.MS.gene23175.t1;Parent=MS.gene23175.t1
chr7.2	exon	51161570	51161787	51161570	ID=MS.gene23175.t1.exon2;Parent=MS.gene23175.t1
chr7.2	CDS	51161570	51161787	51161570	ID=cds.MS.gene23175.t1;Parent=MS.gene23175.t1
chr7.2	exon	51160253	51160800	51160253	ID=MS.gene23175.t1.exon3;Parent=MS.gene23175.t1
chr7.2	CDS	51160253	51160800	51160253	ID=cds.MS.gene23175.t1;Parent=MS.gene23175.t1
chr7.2	exon	51159140	51160169	51159140	ID=MS.gene23175.t1.exon4;Parent=MS.gene23175.t1
chr7.2	CDS	51159140	51160169	51159140	ID=cds.MS.gene23175.t1;Parent=MS.gene23175.t1

Gene Sequence

>MS.gene23175

ATGGACAAGGAACTTCAACTTTGTTCAGTTGATGCTGCTGATGAAGAAGAAATGGTTTCTCAACAAAAACCACAAAGACCCAAGGGTGGTCTTGTCACCATGCCTTTCATCATTGGTATCTTATCAATGACTTGCATGCATTTTTATTTTATTTTATTTTTACTTTTAATGAGCTTAAATTTTGATGTATAATATGGTTTTGTTGTTATTGTGATTGTTTTGATTGCAGGGAATGAAGCACTTGCTAAGATTGCAAGTACAGGACTAATGCCCAACATGCCATCGTATTTGATGGGATCTTACAACCTTCATTTTGCTACAGCTAACCAAATACTTCTCATATCCTTTGCAGCTAGCAATTTCACACCTTTGATTGGTGCTTTTATTGCAGATTCTTATGTGGGTCGATTCCTAGGTGTTGGAATAGGTTCTTTTATCAGTTGCATGGTAATCTTATATATTTAGTTTTGATTTACTTCCATCTTTCATTGCAGTCATGTGTTTTTCTTATCTTTTGACTTGAATATAGACATGGGCACATGGCGTCTAGAATTGGCCGTCCGCCCCGAATTTAACGGGGAAAAGGCGATTTAAGTTGTGCTGATGCGAGAAAACTCGATTTTTTAGTACAGGGCGGGACCGGGGATGATCATACCCGCCCCGCACCCACACCCACCCCGTCCCCGCTATTAACTTACCTTATTATATTTAATAATATTATACCTATTAACTTACAAATAGGTGTCAATCACTTTTAATATATTGTTACTCTATTGAAACATGTTTATCAGAGTTATCTTACTTTTTTGAAAGAGATTTATTTGATTTTTTTTTTTTTATTTTAAAAATACAATGTTTGCGGGTGGGGTGGGGCGGGGAAACCCGTCCCCATTGGAGGTGGGGTGAGTGTTCAATTGTTACCTCCAAAAGGGTTCGATATACCAGAGATCATAGCCTACGTATATTGAGTTCATATCAATTAACTAAATATTTAATCGATTATTATACTAGTTAAATAAAATATTCAACTATGAGATTTTGATAAATTATCCTCAGGTTCCTTTTTATGATTCAAAAGTGATATATATGTTCACTTGTATGAACAAGAATCATACAACGGAAAAAGTAACACCAAACTTGGTATATTCAATTAATATTATGAAATTATTGGTATAATGAGAAAAGTTGTTAATGATGTCTCTTTTTTGTTACACAGGGAATGACACTGATGTGGTTAACAGCCATGATCCCAGCGGCGCAGCCTCCTTTTTGCATCCATGCAGCTGAAGGCTGTACATCAGCAACACCAGGTCAAATGGCAATGTTACTCTCTGCGTTAATTCTGATAGGAATCGGAAATGGTGGTATTTCATGCTCTATAGCATTTGGTGCTGACCAAGTGAATAGAAAAGATAATTCCAATAACCATAGAGCTTTGGAAATATTTTTTAGTTGGTATTACGCTTTCACAACTATTTCTGTCATAATAGCTCTCACTGGATTGGTATATATCCAAGATCATCTTGGTTGGAAAATTGGTTTTGGTGTTCCAACAGCACTCATGATTTTATCCACTGTCCTATTCTTTCTTGCTTCTCCACTTTATGTGAAAATTACACAAAGAACCAGCTTGTTCACTGGTTTTGCACAAGTATTTATTGCTGCCTATAAGAACAGAAAACTTCCATTGCCACATAAAACTTCACCTGAATTTTACCATCACAAAATAGACTCGGATCTTGTTGTTCCAACTGATAGACTAAGGTATATATATAGAATCAATTTACTATACCATCTTTTTAGCTTAATTTTGTGGTTCGTGCGTGGTTAATTATTTTCATTTTCAGGTTTCTAAATAAAGCTTCTGTTATCAAGGATCGTGAACAAGATATAGCCTCAGACGGTTCAGCAATAAATCGTTGGAGTCTTTGCACAGTAGATCAAGTTGAAGAATTGAAAGCCATTATTAAAGTTATTCCATTGTGGTCAACAGGAATCACAATGTCTATTAACATTGGAGGCTCGTTTGGATTGCTGCAAGCTAAATCCTTAGACAGACATATCACTTCAAACTTTGAAATACCAGCAGGATCTTTTTCTGTTATCTTGATATTTGCTGCATTAATATGGATAATTATCTATGATCGTGTTCTTATTCCTTTAGCATCAAAGATAAGAGGGAAACCAGTGAGTATCGGTCCGAAGAGAAGAATGGGAATTGGGTTGTTTTTTAATTTTCTTCAATTGGTAGTTGCAGCAATTTTTGAGACTATAAGGAGAAAGGAAGCAATCAGAAAAGGATATTTGAATGATACTCATGGAGTGTTGAAAATGTCTGCAATGTGGCTTGCACCTCAACTTGCTTTGGGTGGTATAGCTGAAGCATTCAATGTTATTGGCCAAAATGAGTTTTATTACAAAGAGTTTCCAAAGACTATGTCTAGTGTTTCTTCTGCACTTTCTGGATTGGCAATGGCTGCCGGAAACTTGGTATCTTCTTTTGTACTCAGCGTTATAAAAAACGCTACTTCAAGCCAAGGCAAAGAAGGATGGATTTCTGATAATATTAACAAGGGTCGTTTCGACAAGTATTATTGGGTTCTAGTTGGAATTAATGTTCTGAATCTACTGTATTATTTAGTATGCAGTTGGGCTTATGGGCCTACAATTGATCAAATGTCCAAGGTGAGTGAAGAAAATGGTTCCAAGGAGGAAGATTCAACTGTATTCAAGCAAATGAATCCTCTATTTGATGACAAAGACAAAGGTAGTGATGAAACTAGTTCAAAGGAGAAAGAGTTAACTGAATTCAAGAATGGTGGTCAGGTTGAGAAAGTATTCAAGATTAGTGAAGAAAATGGTTTGAAGGAGGAATAG

Protein sequence

>MS.gene23175.t1

MDKELQLCSVDAADEEEMVSQQKPQRPKGGLVTMPFIIGNEALAKIASTGLMPNMPSYLMGSYNLHFATANQILLISFAASNFTPLIGAFIADSYVGRFLGVGIGSFISCMGMTLMWLTAMIPAAQPPFCIHAAEGCTSATPGQMAMLLSALILIGIGNGGISCSIAFGADQVNRKDNSNNHRALEIFFSWYYAFTTISVIIALTGLVYIQDHLGWKIGFGVPTALMILSTVLFFLASPLYVKITQRTSLFTGFAQVFIAAYKNRKLPLPHKTSPEFYHHKIDSDLVVPTDRLRFLNKASVIKDREQDIASDGSAINRWSLCTVDQVEELKAIIKVIPLWSTGITMSINIGGSFGLLQAKSLDRHITSNFEIPAGSFSVILIFAALIWIIIYDRVLIPLASKIRGKPVSIGPKRRMGIGLFFNFLQLVVAAIFETIRRKEAIRKGYLNDTHGVLKMSAMWLAPQLALGGIAEAFNVIGQNEFYYKEFPKTMSSVSSALSGLAMAAGNLVSSFVLSVIKNATSSQGKEGWISDNINKGRFDKYYWVLVGINVLNLLYYLVCSWAYGPTIDQMSKVSEENGSKEEDSTVFKQMNPLFDDKDKGSDETSSKEKELTEFKNGGQVEKVFKISEENGLKEE