AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23175


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23175.t1 MTR_2g101610 82.915 638 105 2 1 636 1 636 0.0 1073
MS.gene23175.t1 MTR_2g101590 81.975 638 110 3 1 636 1 635 0.0 1058
MS.gene23175.t1 MTR_2g101560 83.725 639 99 3 1 636 1 637 0.0 1039
MS.gene23175.t1 MTR_2g101640 76.959 638 134 4 1 636 1 627 0.0 1018
MS.gene23175.t1 MTR_4g011280 66.010 609 187 6 1 602 1 596 0.0 813
MS.gene23175.t1 MTR_1g057460 67.016 573 166 4 1 573 24 573 0.0 791
MS.gene23175.t1 MTR_1g057460 68.023 516 148 2 58 573 4 502 0.0 731
MS.gene23175.t1 MTR_0236s0050 68.992 516 143 4 58 573 4 502 0.0 714
MS.gene23175.t1 MTR_2g101650 55.670 582 249 5 1 578 1 577 0.0 682
MS.gene23175.t1 MTR_8g103233 47.660 577 285 6 16 578 6 579 0.0 534
MS.gene23175.t1 MTR_1g026740 46.333 559 287 6 16 566 2 555 4.35e-178 517
MS.gene23175.t1 MTR_1g009200 46.970 594 302 7 5 591 1 588 1.53e-176 514
MS.gene23175.t1 MTR_1g026750 46.459 579 290 7 16 585 2 569 7.75e-173 504
MS.gene23175.t1 MTR_1g026770 47.156 545 278 6 26 566 14 552 1.85e-167 490
MS.gene23175.t1 MTR_5g038060 37.607 585 342 11 15 583 19 596 5.07e-135 409
MS.gene23175.t1 MTR_5g055000 35.839 572 348 9 25 587 16 577 2.25e-125 383
MS.gene23175.t1 MTR_4g107510 36.814 565 343 8 11 564 20 581 8.44e-124 379
MS.gene23175.t1 MTR_4g107580 35.167 600 360 11 9 587 7 598 9.60e-124 379
MS.gene23175.t1 MTR_8g469480 36.092 568 341 9 30 581 41 602 3.37e-121 372
MS.gene23175.t1 MTR_7g088790 35.932 590 350 14 9 584 10 585 8.53e-121 372
MS.gene23175.t1 MTR_8g469470 36.508 567 339 11 14 564 17 578 7.26e-118 363
MS.gene23175.t1 MTR_5g038190 35.879 563 342 11 14 564 10 565 1.07e-116 360
MS.gene23175.t1 MTR_4g107530 35.135 592 359 10 14 590 15 596 2.86e-116 360
MS.gene23175.t1 MTR_7g088825 32.988 579 369 10 17 585 12 581 3.40e-116 360
MS.gene23175.t1 MTR_7g088820 34.530 585 362 11 10 584 8 581 1.63e-115 358
MS.gene23175.t1 MTR_3g462710 34.601 552 336 12 25 564 22 560 2.37e-103 325
MS.gene23175.t1 MTR_7g067010 34.982 566 330 13 15 558 3 552 3.26e-103 325
MS.gene23175.t1 MTR_4g107610 32.300 613 374 14 14 608 18 607 3.33e-103 326
MS.gene23175.t1 MTR_4g015080 34.727 550 336 11 25 564 32 568 3.92e-103 325
MS.gene23175.t1 MTR_7g088820 33.962 530 329 11 65 584 1 519 6.39e-100 315
MS.gene23175.t1 MTR_7g064780 31.145 594 378 10 14 584 3 588 3.19e-98 312
MS.gene23175.t1 MTR_3g112460 34.281 563 338 12 25 578 21 560 1.11e-95 305
MS.gene23175.t1 MTR_3g112470 34.281 563 338 12 25 578 21 560 1.48e-95 305
MS.gene23175.t1 MTR_5g012270 31.681 565 363 12 25 577 26 579 1.81e-94 302
MS.gene23175.t1 MTR_1g009170 39.683 441 199 11 154 591 9 385 1.05e-90 286
MS.gene23175.t1 MTR_7g064800 30.657 548 358 10 25 558 24 563 1.46e-90 293
MS.gene23175.t1 MTR_3g112450 34.331 568 341 13 7 564 6 551 1.51e-90 292
MS.gene23175.t1 MTR_2g093160 33.276 577 339 15 1 564 1 544 1.15e-89 289
MS.gene23175.t1 MTR_7g088820 33.753 477 295 11 118 584 6 471 6.49e-89 285
MS.gene23175.t1 MTR_4g033315 33.333 573 338 15 4 564 10 550 2.18e-87 283
MS.gene23175.t1 MTR_4g033310 33.333 573 338 15 4 564 10 550 2.18e-87 283
MS.gene23175.t1 MTR_7g098220 32.378 593 358 13 11 584 12 580 2.62e-87 284
MS.gene23175.t1 MTR_4g101380 30.849 577 373 11 25 586 24 589 3.92e-87 283
MS.gene23175.t1 MTR_7g098200 32.598 589 338 16 36 592 38 599 5.33e-87 283
MS.gene23175.t1 MTR_7g098200 32.650 585 333 15 36 592 38 589 1.57e-86 282
MS.gene23175.t1 MTR_5g012290 29.787 564 373 9 14 564 14 567 1.66e-86 282
MS.gene23175.t1 MTR_7g098180 34.128 545 320 12 36 561 40 564 2.67e-86 281
MS.gene23175.t1 MTR_4g114340 31.229 586 389 10 1 583 1 575 4.80e-86 280
MS.gene23175.t1 MTR_2g093640 33.218 578 338 14 1 564 1 544 1.41e-85 278
MS.gene23175.t1 MTR_3g462710 34.914 464 277 12 113 564 1 451 2.78e-85 275
MS.gene23175.t1 MTR_2g093180 33.449 577 339 14 1 564 1 545 4.92e-85 277
MS.gene23175.t1 MTR_4g033325 32.337 569 347 10 4 564 10 548 1.12e-84 276
MS.gene23175.t1 MTR_3g069500 30.116 601 378 14 1 584 1 576 1.46e-84 276
MS.gene23175.t1 MTR_5g085850 31.786 560 356 10 29 582 32 571 1.68e-84 276
MS.gene23175.t1 MTR_7g098220 33.786 515 304 10 85 584 44 536 2.26e-84 275
MS.gene23175.t1 MTR_7g006540 32.297 579 362 12 29 586 65 634 5.81e-84 276
MS.gene23175.t1 MTR_4g033330 32.793 555 333 14 4 549 10 533 4.57e-83 271
MS.gene23175.t1 MTR_3g072300 32.916 559 340 17 23 564 18 558 6.16e-83 272
MS.gene23175.t1 MTR_7g098230 32.597 543 330 11 36 561 35 558 8.37e-83 272
MS.gene23175.t1 MTR_7g098090 31.303 591 349 13 36 592 42 609 1.06e-82 272
MS.gene23175.t1 MTR_7g098040 31.779 579 364 12 36 598 43 606 7.29e-82 270
MS.gene23175.t1 MTR_1g075440 31.153 581 357 15 29 587 30 589 2.47e-81 268
MS.gene23175.t1 MTR_4g019580 30.396 556 366 11 36 584 45 586 3.07e-81 268
MS.gene23175.t1 MTR_3g069440 30.329 577 370 13 24 587 29 586 4.04e-81 268
MS.gene23175.t1 MTR_3g069420 31.625 566 353 13 36 587 43 588 1.31e-80 266
MS.gene23175.t1 MTR_7g098160 30.035 576 373 11 36 596 42 602 2.29e-80 266
MS.gene23175.t1 MTR_3g005010 31.123 543 335 8 28 564 31 540 2.47e-80 264
MS.gene23175.t1 MTR_0294s0020 31.239 573 348 12 4 564 10 548 4.62e-80 264
MS.gene23175.t1 MTR_7g065080 29.125 594 383 14 2 584 9 575 5.48e-80 264
MS.gene23175.t1 MTR_7g065080 30.980 510 319 12 85 584 2 488 1.55e-79 261
MS.gene23175.t1 MTR_8g087810 32.075 583 364 14 15 568 2 581 9.96e-78 258
MS.gene23175.t1 MTR_7g098200 32.803 503 297 13 113 592 1 485 7.20e-76 251
MS.gene23175.t1 MTR_2g017750 28.974 604 395 14 1 582 11 602 5.76e-75 251
MS.gene23175.t1 MTR_1g041815 30.998 571 366 12 36 593 36 591 8.43e-75 251
MS.gene23175.t1 MTR_2g005130 29.054 592 381 16 11 587 18 585 1.14e-74 250
MS.gene23175.t1 MTR_3g100980 30.159 567 365 11 16 569 5 553 1.78e-74 249
MS.gene23175.t1 MTR_4g033325 32.265 468 283 9 104 564 10 450 7.70e-74 244
MS.gene23175.t1 MTR_1g041835 31.261 563 346 15 36 578 36 577 1.59e-72 244
MS.gene23175.t1 MTR_1g085090 28.435 626 398 18 11 611 3 603 1.74e-72 245
MS.gene23175.t1 MTR_1g042310 30.672 551 350 12 29 564 28 561 3.73e-72 244
MS.gene23175.t1 MTR_8g038880 31.716 577 341 12 28 585 21 563 3.92e-72 243
MS.gene23175.t1 MTR_4g033325 33.103 435 266 8 138 564 7 424 6.61e-72 239
MS.gene23175.t1 MTR_5g014150 28.905 557 375 12 37 580 54 602 9.67e-72 243
MS.gene23175.t1 MTR_1g042310 31.961 510 313 13 84 576 39 531 1.22e-71 241
MS.gene23175.t1 MTR_1g042310 31.961 510 313 13 84 576 46 538 1.80e-71 241
MS.gene23175.t1 MTR_3g014790 31.004 558 341 11 21 561 11 541 2.15e-71 241
MS.gene23175.t1 MTR_4g033395 32.573 482 296 9 36 512 41 498 6.84e-71 238
MS.gene23175.t1 MTR_4g033375 31.827 509 315 10 11 512 15 498 2.21e-70 236
MS.gene23175.t1 MTR_8g087780 30.109 548 355 13 15 538 2 545 6.94e-70 238
MS.gene23175.t1 MTR_1g041885 31.328 482 292 14 84 550 39 496 9.33e-70 236
MS.gene23175.t1 MTR_4g033385 32.391 460 280 10 112 564 16 451 1.69e-69 233
MS.gene23175.t1 MTR_7g111260 30.810 568 348 20 11 563 3 540 3.62e-69 236
MS.gene23175.t1 MTR_3g100980 28.739 595 365 13 16 569 5 581 3.76e-69 236
MS.gene23175.t1 MTR_7g005930 29.032 589 382 15 10 584 18 584 1.28e-68 234
MS.gene23175.t1 MTR_1g041875 31.015 532 324 18 29 543 31 536 1.55e-68 234
MS.gene23175.t1 MTR_7g010820 30.838 561 357 15 1 544 2 548 1.98e-67 231
MS.gene23175.t1 MTR_4g098800 30.855 538 345 14 37 561 46 569 1.67e-66 229
MS.gene23175.t1 MTR_4g098800 30.855 538 345 14 37 561 111 634 6.80e-66 228
MS.gene23175.t1 MTR_1g116930 29.152 566 366 15 15 564 8 554 1.00e-63 221
MS.gene23175.t1 MTR_7g013270 29.144 549 365 9 26 564 89 623 5.33e-61 215
MS.gene23175.t1 MTR_4g107670 28.269 566 351 19 28 563 25 565 5.12e-60 211
MS.gene23175.t1 MTR_6g008690 27.113 568 365 15 18 567 1 537 5.73e-56 199
MS.gene23175.t1 MTR_4g123537 28.722 571 365 19 11 564 22 567 6.24e-56 200
MS.gene23175.t1 MTR_8g469310 26.585 568 356 15 28 563 27 565 1.19e-55 199
MS.gene23175.t1 MTR_5g038380 25.044 567 367 11 28 563 29 568 1.96e-53 192
MS.gene23175.t1 MTR_7g098150 31.166 446 257 13 36 457 42 461 2.06e-53 191
MS.gene23175.t1 MTR_7g098210 28.454 485 262 8 85 559 25 434 6.12e-50 180
MS.gene23175.t1 MTR_4g033310 32.407 324 198 6 247 564 178 486 2.67e-48 177
MS.gene23175.t1 MTR_4g033310 35.000 200 112 6 4 201 10 193 9.53e-19 90.1
MS.gene23175.t1 MTR_7g052600 25.725 552 357 12 21 564 19 525 1.61e-40 155
MS.gene23175.t1 MTR_4g024930 26.134 551 356 16 29 564 38 552 1.07e-38 151
MS.gene23175.t1 MTR_7g051880 24.867 563 370 12 4 558 2 519 1.35e-37 147
MS.gene23175.t1 MTR_7g051830 24.643 560 375 11 4 558 2 519 7.69e-37 145
MS.gene23175.t1 MTR_8g091265 42.857 126 66 4 294 415 3 126 5.22e-21 90.1
MS.gene23175.t1 MTR_3g065350 28.916 166 108 4 336 499 1 158 6.89e-15 73.2
MS.gene23175.t1 MTR_4g033390 34.021 97 59 2 482 573 30 126 1.32e-12 65.5
MS.gene23175.t1 MTR_2g093650 39.216 102 60 1 340 441 32 131 1.55e-12 67.8
MS.gene23175.t1 MTR_7g064160 31.532 111 66 1 11 111 3 113 4.99e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23175.t1 AT1G52190 53.356 581 262 6 15 587 9 588 0.0 651
MS.gene23175.t1 AT3G16180 53.242 586 265 8 11 589 6 589 0.0 644
MS.gene23175.t1 AT1G68570 37.774 593 350 8 9 592 5 587 1.58e-126 386
MS.gene23175.t1 AT1G69870 36.000 575 353 8 18 583 42 610 3.79e-126 386
MS.gene23175.t1 AT5G62680 36.532 594 359 12 9 587 25 615 2.48e-116 360
MS.gene23175.t1 AT1G68570 36.814 565 334 9 39 592 5 557 1.01e-113 352
MS.gene23175.t1 AT3G47960 35.726 585 346 10 10 584 50 614 4.19e-111 347
MS.gene23175.t1 AT1G27080 33.333 594 358 14 24 607 11 576 1.31e-109 342
MS.gene23175.t1 AT1G18880 35.466 547 336 9 30 564 22 563 1.99e-109 342
MS.gene23175.t1 AT1G62200 36.953 571 335 10 1 560 25 581 2.72e-107 336
MS.gene23175.t1 AT3G54140 36.499 537 324 9 36 564 33 560 3.61e-106 333
MS.gene23175.t1 AT3G54140 36.499 537 324 9 36 564 33 560 3.61e-106 333
MS.gene23175.t1 AT2G02040 34.798 569 354 9 5 564 18 578 4.49e-106 333
MS.gene23175.t1 AT5G01180 35.219 548 335 10 21 558 17 554 2.54e-103 325
MS.gene23175.t1 AT5G01180 35.219 548 335 10 21 558 17 554 2.54e-103 325
MS.gene23175.t1 AT5G01180 35.219 548 335 10 21 558 17 554 2.54e-103 325
MS.gene23175.t1 AT5G28470 34.686 542 335 10 25 557 15 546 1.37e-102 323
MS.gene23175.t1 AT1G62200 35.500 600 333 11 1 560 25 610 2.47e-102 324
MS.gene23175.t1 AT1G62200 35.500 600 333 11 1 560 39 624 2.94e-102 324
MS.gene23175.t1 AT1G27080 33.036 560 337 14 58 607 3 534 9.30e-101 317
MS.gene23175.t1 AT5G28470 34.502 542 334 11 25 557 15 544 7.86e-100 316
MS.gene23175.t1 AT3G45660 33.449 577 352 10 14 587 8 555 8.00e-98 310
MS.gene23175.t1 AT3G45660 33.449 577 352 10 14 587 8 555 8.00e-98 310
MS.gene23175.t1 AT3G45660 33.449 577 352 10 14 587 29 576 1.30e-97 311
MS.gene23175.t1 AT3G45650 33.631 559 346 9 9 564 4 540 1.86e-97 310
MS.gene23175.t1 AT3G45650 32.137 585 346 10 9 564 4 566 9.98e-92 295
MS.gene23175.t1 AT2G26690 32.692 572 368 12 13 579 10 569 4.86e-91 293
MS.gene23175.t1 AT2G02020 33.394 545 314 10 25 564 40 540 1.58e-89 288
MS.gene23175.t1 AT2G26690 33.150 546 348 12 39 579 3 536 5.38e-88 284
MS.gene23175.t1 AT2G26690 33.458 535 339 12 50 579 2 524 6.16e-86 279
MS.gene23175.t1 AT3G54450 31.079 547 341 8 25 558 10 533 7.27e-86 279
MS.gene23175.t1 AT1G69860 32.790 552 338 12 25 564 16 546 7.91e-86 279
MS.gene23175.t1 AT3G45720 29.505 566 361 11 28 586 20 554 8.64e-85 276
MS.gene23175.t1 AT5G46050 31.343 536 341 10 21 543 19 540 9.06e-85 277
MS.gene23175.t1 AT3G45710 30.481 561 357 9 12 564 6 541 1.15e-84 276
MS.gene23175.t1 AT3G21670 30.833 600 381 14 11 599 12 588 3.26e-81 268
MS.gene23175.t1 AT5G46040 33.461 523 315 13 36 543 36 540 1.77e-80 266
MS.gene23175.t1 AT3G45680 30.389 566 359 11 7 564 1 539 7.55e-80 263
MS.gene23175.t1 AT1G12110 31.771 576 359 15 21 577 19 579 4.78e-79 262
MS.gene23175.t1 AT3G45700 30.071 562 348 12 11 564 5 529 8.90e-79 260
MS.gene23175.t1 AT1G59740 31.338 568 354 16 11 561 23 571 9.16e-79 261
MS.gene23175.t1 AT1G22540 31.884 552 344 10 21 564 22 549 2.56e-78 259
MS.gene23175.t1 AT1G33440 30.268 598 350 18 23 586 32 596 9.90e-78 259
MS.gene23175.t1 AT2G40460 32.015 531 328 13 36 554 33 542 1.89e-77 258
MS.gene23175.t1 AT2G37900 29.346 535 348 11 36 561 47 560 4.64e-77 256
MS.gene23175.t1 AT3G53960 28.826 562 375 13 36 586 46 593 6.82e-77 257
MS.gene23175.t1 AT5G46050 32.727 440 275 7 113 543 1 428 7.89e-77 253
MS.gene23175.t1 AT2G37900 29.796 490 314 11 81 561 13 481 3.22e-75 249
MS.gene23175.t1 AT1G72125 30.741 540 339 10 36 564 38 553 7.49e-75 250
MS.gene23175.t1 AT2G02020 31.734 542 306 12 25 564 40 519 2.40e-74 248
MS.gene23175.t1 AT5G13400 31.204 548 348 11 29 558 66 602 8.09e-74 249
MS.gene23175.t1 AT1G72140 30.347 547 325 12 36 564 43 551 2.28e-72 243
MS.gene23175.t1 AT1G32450 29.145 573 379 10 37 587 47 614 1.52e-71 243
MS.gene23175.t1 AT1G22550 28.253 584 366 9 2 564 5 556 9.67e-71 239
MS.gene23175.t1 AT1G22570 28.649 555 364 8 2 545 5 538 1.47e-67 231
MS.gene23175.t1 AT4G21680 28.472 576 387 15 3 564 6 570 1.80e-67 231
MS.gene23175.t1 AT1G72130 28.877 561 325 10 25 564 23 530 8.41e-67 228
MS.gene23175.t1 AT1G27040 29.466 543 359 11 29 563 29 555 3.70e-66 227
MS.gene23175.t1 AT1G27040 29.466 543 359 11 29 563 25 551 4.49e-66 227
MS.gene23175.t1 AT1G72120 29.130 563 361 12 11 564 16 549 9.86e-66 226
MS.gene23175.t1 AT3G45690 27.634 579 344 15 15 586 6 516 1.96e-65 224
MS.gene23175.t1 AT1G22570 29.423 520 333 10 38 545 4 501 3.26e-65 223
MS.gene23175.t1 AT1G27040 30.271 479 310 11 93 563 61 523 1.03e-63 219
MS.gene23175.t1 AT5G11570 45.635 252 123 5 317 565 237 477 1.27e-63 218
MS.gene23175.t1 AT5G11570 43.498 223 120 3 28 248 14 232 6.77e-45 167
MS.gene23175.t1 AT1G72130 29.412 442 248 9 144 564 14 412 5.62e-56 196
MS.gene23175.t1 AT1G72130 29.412 442 248 9 144 564 14 412 5.62e-56 196
MS.gene23175.t1 AT5G19640 27.036 577 381 15 28 591 60 609 2.95e-55 198
MS.gene23175.t1 AT5G14940 25.610 574 343 13 25 559 5 533 8.25e-54 193
MS.gene23175.t1 AT1G69850 25.664 565 372 14 29 563 27 573 1.68e-52 190
MS.gene23175.t1 AT3G25260 26.908 498 304 13 74 563 67 512 5.06e-52 187
MS.gene23175.t1 AT3G01350 25.507 592 375 18 25 585 5 561 8.15e-50 182
MS.gene23175.t1 AT5G62730 26.534 554 358 16 28 563 57 579 1.55e-46 174
MS.gene23175.t1 AT5G62730 26.557 546 352 16 36 563 6 520 2.92e-45 169
MS.gene23175.t1 AT3G25280 25.581 516 333 10 54 563 48 518 1.45e-42 161
MS.gene23175.t1 AT2G38100 24.254 536 354 14 58 581 5 500 9.72e-29 120
MS.gene23175.t1 AT2G38100 24.254 536 354 14 58 581 21 516 2.45e-28 119
MS.gene23175.t1 AT2G38100 24.254 536 354 14 58 581 27 522 3.12e-28 119

Find 122 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGTTTCTTCTGCACTTTC+TGG 0.083697 7.2:-51159552 MS.gene23175:CDS
CTTTGTAATAAAACTCATTT+TGG 0.123205 7.2:+51159595 None:intergenic
GATCATCTTGGTTGGAAAAT+TGG 0.157074 7.2:-51160478 MS.gene23175:CDS
GCTGAAGCATTCAATGTTAT+TGG 0.158926 7.2:-51159618 MS.gene23175:CDS
TTCCAAAGCTCTATGGTTAT+TGG 0.164771 7.2:+51160576 None:intergenic
TGATATTTGCTGCATTAATA+TGG 0.218977 7.2:-51159887 MS.gene23175:CDS
CTTGCACCTCAACTTGCTTT+GGG 0.276352 7.2:-51159648 MS.gene23175:CDS
TTCAAGATTAGTGAAGAAAA+TGG 0.280060 7.2:-51159156 MS.gene23175:CDS
CAATGGAATAACTTTAATAA+TGG 0.287573 7.2:+51160034 None:intergenic
CAAAGGATATGAGAAGTATT+TGG 0.297352 7.2:+51161668 None:intergenic
CTTGGTTGGAAAATTGGTTT+TGG 0.297432 7.2:-51160472 MS.gene23175:CDS
TAGTATGCAGTTGGGCTTAT+GGG 0.298647 7.2:-51159356 MS.gene23175:CDS
GCTTGCACCTCAACTTGCTT+TGG 0.303085 7.2:-51159649 MS.gene23175:CDS
AAAATATTTCCAAAGCTCTA+TGG 0.305384 7.2:+51160569 None:intergenic
ATTTCATGCTCTATAGCATT+TGG 0.310269 7.2:-51160628 MS.gene23175:CDS
GTCGTTTCGACAAGTATTAT+TGG 0.314208 7.2:-51159419 MS.gene23175:CDS
TTAGTATGCAGTTGGGCTTA+TGG 0.323036 7.2:-51159357 MS.gene23175:CDS
GTCACCATGCCTTTCATCAT+TGG 0.331716 7.2:-51161901 MS.gene23175:intron
TGAAGTGATATGTCTGTCTA+AGG 0.345295 7.2:+51159947 None:intergenic
ATTAACATTGGAGGCTCGTT+TGG 0.350690 7.2:-51159987 MS.gene23175:CDS
GAAACACTAGACATAGTCTT+TGG 0.360014 7.2:+51159567 None:intergenic
CCTCTTATCTTTGATGCTAA+AGG 0.364995 7.2:+51159837 None:intergenic
TTCTTCTGCACTTTCTGGAT+TGG 0.366449 7.2:-51159547 MS.gene23175:CDS
ATCAAATACGATGGCATGTT+GGG 0.369132 7.2:+51161724 None:intergenic
TTGGACATTTGATCAATTGT+AGG 0.371121 7.2:+51159333 None:intergenic
AAAAGAAGATACCAAGTTTC+CGG 0.371463 7.2:+51159515 None:intergenic
AGCAATTTCACACCTTTGAT+TGG 0.374887 7.2:-51161640 MS.gene23175:CDS
GTTATTCCATTGTGGTCAAC+AGG 0.380881 7.2:-51160023 MS.gene23175:CDS
TCGTTTCGACAAGTATTATT+GGG 0.381220 7.2:-51159418 MS.gene23175:CDS
TCCAAGGTGAGTGAAGAAAA+TGG 0.393032 7.2:-51159315 MS.gene23175:CDS
AAATCCATCCTTCTTTGCCT+TGG 0.397035 7.2:+51159460 None:intergenic
TTCCAATAACCATAGAGCTT+TGG 0.397860 7.2:-51160578 MS.gene23175:CDS
CCAATTCCCATTCTTCTCTT+CGG 0.398109 7.2:+51159795 None:intergenic
TCAGCTGCATGGATGCAAAA+AGG 0.401822 7.2:+51160730 None:intergenic
CGATTCCTAGGTGTTGGAAT+AGG 0.414583 7.2:-51161589 MS.gene23175:CDS
CCGAAGAGAAGAATGGGAAT+TGG 0.414724 7.2:-51159795 MS.gene23175:CDS
CAACATGCCATCGTATTTGA+TGG 0.418645 7.2:-51161722 MS.gene23175:CDS
CCTTTAGCATCAAAGATAAG+AGG 0.419532 7.2:-51159837 MS.gene23175:CDS
GGCAATGGCTGCCGGAAACT+TGG 0.426220 7.2:-51159526 MS.gene23175:CDS
AGGCTGCGCCGCTGGGATCA+TGG 0.429559 7.2:+51160753 None:intergenic
AAATAAAGCTTCTGTTATCA+AGG 0.436402 7.2:-51160141 MS.gene23175:CDS
AGACCACCCTTGGGTCTTTG+TGG 0.443412 7.2:+51161925 None:intergenic
TGCACTTTCTGGATTGGCAA+TGG 0.443959 7.2:-51159541 MS.gene23175:CDS
TACAGTTGAATCTTCCTCCT+TGG 0.446350 7.2:+51159290 None:intergenic
CGAAGAGAAGAATGGGAATT+GGG 0.451137 7.2:-51159794 MS.gene23175:CDS
TCTGGATTGGCAATGGCTGC+CGG 0.451266 7.2:-51159534 MS.gene23175:CDS
TTGTCTTTGTCATCAAATAG+AGG 0.451973 7.2:+51159252 None:intergenic
TGTATTATTTAGTATGCAGT+TGG 0.452225 7.2:-51159365 MS.gene23175:CDS
CATGGTGACAAGACCACCCT+TGG 0.459000 7.2:+51161915 None:intergenic
CTCTCTGCGTTAATTCTGAT+AGG 0.460782 7.2:-51160667 MS.gene23175:CDS
TCTTATGTGGGTCGATTCCT+AGG 0.462695 7.2:-51161601 MS.gene23175:CDS
TAGTGAAGAAAATGGTTTGA+AGG 0.463399 7.2:-51159148 MS.gene23175:CDS
TGCTGCTGATGAAGAAGAAA+TGG 0.464327 7.2:-51161962 MS.gene23175:CDS
ATCAGCAACACCAGGTCAAA+TGG 0.464768 7.2:-51160698 MS.gene23175:CDS
TTTATTGCAGATTCTTATGT+GGG 0.472925 7.2:-51161613 MS.gene23175:CDS
GGTTAGCTGTAGCAAAATGA+AGG 0.478653 7.2:+51161689 None:intergenic
CAAAGAACCAGCTTGTTCAC+TGG 0.480533 7.2:-51160376 MS.gene23175:CDS
TTGTTCCAACTGATAGACTA+AGG 0.481528 7.2:-51160252 MS.gene23175:intron
CTCTTCGGACCGATACTCAC+TGG 0.482336 7.2:+51159810 None:intergenic
GTGGAGAAGCAAGAAAGAAT+AGG 0.482574 7.2:+51160416 None:intergenic
TGAATTCAAGAATGGTGGTC+AGG 0.484071 7.2:-51159190 MS.gene23175:CDS
GCGTTAATTCTGATAGGAAT+CGG 0.488247 7.2:-51160661 MS.gene23175:CDS
AAGTATTATTGGGTTCTAGT+TGG 0.493290 7.2:-51159408 MS.gene23175:CDS
GATAAAATCATGAGTGCTGT+TGG 0.494209 7.2:+51160445 None:intergenic
GTGGGTCGATTCCTAGGTGT+TGG 0.496370 7.2:-51161595 MS.gene23175:CDS
ATCGGTCCGAAGAGAAGAAT+GGG 0.501114 7.2:-51159801 MS.gene23175:CDS
CATAATAGCTCTCACTGGAT+TGG 0.501811 7.2:-51160512 MS.gene23175:CDS
GTATATATCCAAGATCATCT+TGG 0.504086 7.2:-51160490 MS.gene23175:CDS
AGAAAGGAAGCAATCAGAAA+AGG 0.506371 7.2:-51159717 MS.gene23175:CDS
GTATTATTTAGTATGCAGTT+GGG 0.508088 7.2:-51159364 MS.gene23175:CDS
TATCGGTCCGAAGAGAAGAA+TGG 0.508999 7.2:-51159802 MS.gene23175:CDS
ACTTCAAGCCAAGGCAAAGA+AGG 0.518672 7.2:-51159468 MS.gene23175:CDS
TGTGAAATTGCTAGCTGCAA+AGG 0.520997 7.2:+51161651 None:intergenic
ATTCTGATAGGAATCGGAAA+TGG 0.527046 7.2:-51160655 MS.gene23175:CDS
CATCAAATACGATGGCATGT+TGG 0.534665 7.2:+51161723 None:intergenic
GCACCTCAACTTGCTTTGGG+TGG 0.539724 7.2:-51159645 MS.gene23175:CDS
ACAATGTCTATTAACATTGG+AGG 0.542460 7.2:-51159996 MS.gene23175:CDS
CTTTAGCATCAAAGATAAGA+GGG 0.548696 7.2:-51159836 MS.gene23175:CDS
TCTGTCATAATAGCTCTCAC+TGG 0.555266 7.2:-51160517 MS.gene23175:CDS
ATCACAATGTCTATTAACAT+TGG 0.557139 7.2:-51159999 MS.gene23175:CDS
ATTTATTGCTGAACCGTCTG+AGG 0.560005 7.2:+51160100 None:intergenic
GGATATTTGAATGATACTCA+TGG 0.561496 7.2:-51159696 MS.gene23175:CDS
TGAAGAAAATGGTTTGAAGG+AGG 0.561895 7.2:-51159145 MS.gene23175:CDS
ATATCCAAGATCATCTTGGT+TGG 0.566372 7.2:-51160486 MS.gene23175:CDS
GCAATAAAAGCACCAATCAA+AGG 0.569109 7.2:+51161628 None:intergenic
GAGTTAACTGAATTCAAGAA+TGG 0.573785 7.2:-51159198 MS.gene23175:CDS
CAAGCCAAGGCAAAGAAGGA+TGG 0.574342 7.2:-51159464 MS.gene23175:CDS
AGTAACATTGCCATTTGACC+TGG 0.574353 7.2:+51160688 None:intergenic
ATGTACAGCCTTCAGCTGCA+TGG 0.574607 7.2:+51160719 None:intergenic
TCAAACTTTGAAATACCAGC+AGG 0.576488 7.2:-51159927 MS.gene23175:CDS
TAGTGATGAAACTAGTTCAA+AGG 0.581120 7.2:-51159226 MS.gene23175:CDS
ATGGTGACAAGACCACCCTT+GGG 0.581493 7.2:+51161916 None:intergenic
TGCAAAACCAGTGAACAAGC+TGG 0.582250 7.2:+51160369 None:intergenic
GATTTCTGATAATATTAACA+AGG 0.582713 7.2:-51159442 MS.gene23175:CDS
ATATACCTTAGTCTATCAGT+TGG 0.587521 7.2:+51160247 None:intergenic
AACATGCCATCGTATTTGAT+GGG 0.588204 7.2:-51161721 MS.gene23175:CDS
ACGGTTCAGCAATAAATCGT+TGG 0.590419 7.2:-51160094 MS.gene23175:CDS
AGAGGGAAACCAGTGAGTAT+CGG 0.593871 7.2:-51159819 MS.gene23175:CDS
TTATTAAAGTTATTCCATTG+TGG 0.594692 7.2:-51160031 MS.gene23175:CDS
TACAATTGATCAAATGTCCA+AGG 0.594957 7.2:-51159331 MS.gene23175:CDS
CTTGCTAAGATTGCAAGTAC+AGG 0.596761 7.2:-51161754 MS.gene23175:CDS
GAGTGAAGAAAATGGTTCCA+AGG 0.598642 7.2:-51159307 MS.gene23175:CDS
GGCTGTACATCAGCAACACC+AGG 0.599010 7.2:-51160706 MS.gene23175:CDS
GATAAGATACCAATGATGAA+AGG 0.599602 7.2:+51161892 None:intergenic
CTGATAGGAATCGGAAATGG+TGG 0.614372 7.2:-51160652 MS.gene23175:CDS
AGCAAGAAAGAATAGGACAG+TGG 0.624903 7.2:+51160423 None:intergenic
TTAACTGAATTCAAGAATGG+TGG 0.626429 7.2:-51159195 MS.gene23175:CDS
TTACCATCACAAAATAGACT+CGG 0.635909 7.2:-51160281 MS.gene23175:CDS
ATTTCTGATAATATTAACAA+GGG 0.642765 7.2:-51159441 MS.gene23175:CDS
GAACAAGATATAGCCTCAGA+CGG 0.653376 7.2:-51160113 MS.gene23175:CDS
GATACCAATGATGAAAGGCA+TGG 0.657609 7.2:+51161897 None:intergenic
GTGATTCCTGTTGACCACAA+TGG 0.658146 7.2:+51160017 None:intergenic
CTATTTGATGACAAAGACAA+AGG 0.660576 7.2:-51159249 MS.gene23175:CDS
TAAGATCCCATCAAATACGA+TGG 0.661640 7.2:+51161715 None:intergenic
ATACCACCCAAAGCAAGTTG+AGG 0.661833 7.2:+51159642 None:intergenic
CACAGGGAATGACACTGATG+TGG 0.669607 7.2:-51160783 MS.gene23175:intron
AAGAACCTATTCCAACACCT+AGG 0.698940 7.2:+51161584 None:intergenic
AATGAAATAAAATATGGACA+AGG 0.705133 7.2:-51162007 None:intergenic
AAACCACAAAGACCCAAGGG+TGG 0.721957 7.2:-51161928 MS.gene23175:CDS
TGAAGAAAATGGTTCCAAGG+AGG 0.742024 7.2:-51159304 MS.gene23175:CDS
GTTAACAGCCATGATCCCAG+CGG 0.746110 7.2:-51160761 MS.gene23175:CDS
TGTTGAAAATGTCTGCAATG+TGG 0.749104 7.2:-51159671 MS.gene23175:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTATTAAATATAATA+AGG + chr7.2:51159840-51159859 None:intergenic 0.0%
!!! TTAAATTTTGATGTATAATA+TGG - chr7.2:51159314-51159333 MS.gene23175:CDS 10.0%
!! ATTTCTGATAATATTAACAA+GGG - chr7.2:51161693-51161712 MS.gene23175:CDS 15.0%
!!! GTTTTTTAATTTTCTTCAAT+TGG - chr7.2:51161365-51161384 MS.gene23175:intron 15.0%
!!! TTTTAAAAATACAATGTTTG+CGG - chr7.2:51159979-51159998 MS.gene23175:CDS 15.0%
!! ACAAAATTAAGCTAAAAAGA+TGG + chr7.2:51160934-51160953 None:intergenic 20.0%
!! ATAATAAGGTAAGTTAATAG+CGG + chr7.2:51159826-51159845 None:intergenic 20.0%
!! ATACCTATTAACTTACAAAT+AGG - chr7.2:51159859-51159878 MS.gene23175:CDS 20.0%
!! CAATGGAATAACTTTAATAA+TGG + chr7.2:51161103-51161122 None:intergenic 20.0%
!! GATTTCTGATAATATTAACA+AGG - chr7.2:51161692-51161711 MS.gene23175:CDS 20.0%
!! TTAATTGAATATACCAAGTT+TGG + chr7.2:51160274-51160293 None:intergenic 20.0%
!! TTATTAAAGTTATTCCATTG+TGG - chr7.2:51161103-51161122 MS.gene23175:intron 20.0%
!! TTTAAAAATACAATGTTTGC+GGG - chr7.2:51159980-51159999 MS.gene23175:CDS 20.0%
!!! AATTATCTTTTCTATTCACT+TGG + chr7.2:51160538-51160557 None:intergenic 20.0%
!!! ATCACTTTTGAATCATAAAA+AGG + chr7.2:51160202-51160221 None:intergenic 20.0%
!!! ATCTTTTTAGCTTAATTTTG+TGG - chr7.2:51160933-51160952 MS.gene23175:intron 20.0%
!!! CTTTGGAAATATTTTTTAGT+TGG - chr7.2:51160573-51160592 MS.gene23175:CDS 20.0%
!!! CTTTGTAATAAAACTCATTT+TGG + chr7.2:51161542-51161561 None:intergenic 20.0%
!!! GGTTAATTATTTTCATTTTC+AGG - chr7.2:51160965-51160984 MS.gene23175:intron 20.0%
! AAAATATTTCCAAAGCTCTA+TGG + chr7.2:51160568-51160587 None:intergenic 25.0%
! AAATAAAGCTTCTGTTATCA+AGG - chr7.2:51160993-51161012 MS.gene23175:intron 25.0%
! ACACCTATTTGTAAGTTAAT+AGG + chr7.2:51159865-51159884 None:intergenic 25.0%
! ATCACAATGTCTATTAACAT+TGG - chr7.2:51161135-51161154 MS.gene23175:intron 25.0%
! GTATTATTTAGTATGCAGTT+GGG - chr7.2:51161770-51161789 MS.gene23175:intron 25.0%
! TAATAAGGTAAGTTAATAGC+GGG + chr7.2:51159825-51159844 None:intergenic 25.0%
! TATGAACAAGAATCATACAA+CGG - chr7.2:51160237-51160256 MS.gene23175:intron 25.0%
! TGTATTATTTAGTATGCAGT+TGG - chr7.2:51161769-51161788 MS.gene23175:intron 25.0%
! TTCAAGATTAGTGAAGAAAA+TGG - chr7.2:51161978-51161997 MS.gene23175:CDS 25.0%
! TTTATTGCAGATTCTTATGT+GGG - chr7.2:51159521-51159540 MS.gene23175:CDS 25.0%
!! ATTTTGTGATGGTAAAATTC+AGG + chr7.2:51160848-51160867 None:intergenic 25.0%
!! TGATATTTGCTGCATTAATA+TGG - chr7.2:51161247-51161266 MS.gene23175:intron 25.0%
!! TGTGTAATTTTCACATAAAG+TGG + chr7.2:51160740-51160759 None:intergenic 25.0%
!! TTTTATTGCAGATTCTTATG+TGG - chr7.2:51159520-51159539 MS.gene23175:CDS 25.0%
!!! AAAACTCGATTTTTTAGTAC+AGG - chr7.2:51159750-51159769 MS.gene23175:CDS 25.0%
!!! AAACTCGATTTTTTAGTACA+GGG - chr7.2:51159751-51159770 MS.gene23175:CDS 25.0%
!!! GATTTTGATAAATTATCCTC+AGG - chr7.2:51160174-51160193 MS.gene23175:intron 25.0%
!!! TTTGACTTGAATATAGACAT+GGG - chr7.2:51159653-51159672 MS.gene23175:CDS 25.0%
!!! TTTTGACTTGAATATAGACA+TGG - chr7.2:51159652-51159671 MS.gene23175:CDS 25.0%
AAAAGAAGATACCAAGTTTC+CGG + chr7.2:51161622-51161641 None:intergenic 30.0%
AATAAGGTAAGTTAATAGCG+GGG + chr7.2:51159824-51159843 None:intergenic 30.0%
ACAATGTCTATTAACATTGG+AGG - chr7.2:51161138-51161157 MS.gene23175:intron 30.0%
ATATACCTTAGTCTATCAGT+TGG + chr7.2:51160890-51160909 None:intergenic 30.0%
ATTTCATGCTCTATAGCATT+TGG - chr7.2:51160506-51160525 MS.gene23175:CDS 30.0%
CTTTAGCATCAAAGATAAGA+GGG - chr7.2:51161298-51161317 MS.gene23175:intron 30.0%
GAGTTAACTGAATTCAAGAA+TGG - chr7.2:51161936-51161955 MS.gene23175:CDS 30.0%
GATAAGATACCAATGATGAA+AGG + chr7.2:51159245-51159264 None:intergenic 30.0%
GATATGAACTCAATATACGT+AGG + chr7.2:51160097-51160116 None:intergenic 30.0%
GGATATTTGAATGATACTCA+TGG - chr7.2:51161438-51161457 MS.gene23175:intron 30.0%
GTATATATCCAAGATCATCT+TGG - chr7.2:51160644-51160663 MS.gene23175:CDS 30.0%
TACAATTGATCAAATGTCCA+AGG - chr7.2:51161803-51161822 MS.gene23175:intron 30.0%
TAGTGAAGAAAATGGTTTGA+AGG - chr7.2:51161986-51162005 MS.gene23175:CDS 30.0%
TAGTGATGAAACTAGTTCAA+AGG - chr7.2:51161908-51161927 MS.gene23175:CDS 30.0%
TCGTTTCGACAAGTATTATT+GGG - chr7.2:51161716-51161735 MS.gene23175:CDS 30.0%
TTAACTGAATTCAAGAATGG+TGG - chr7.2:51161939-51161958 MS.gene23175:CDS 30.0%
TTACCATCACAAAATAGACT+CGG - chr7.2:51160853-51160872 MS.gene23175:intron 30.0%
TTCAATTGTTACCTCCAAAA+GGG - chr7.2:51160049-51160068 MS.gene23175:CDS 30.0%
TTGGACATTTGATCAATTGT+AGG + chr7.2:51161804-51161823 None:intergenic 30.0%
TTGTCTTTGTCATCAAATAG+AGG + chr7.2:51161885-51161904 None:intergenic 30.0%
! AAGTATTATTGGGTTCTAGT+TGG - chr7.2:51161726-51161745 MS.gene23175:CDS 30.0%
! CTATTTGATGACAAAGACAA+AGG - chr7.2:51161885-51161904 MS.gene23175:intron 30.0%
! TGGAAGTTTTCTGTTCTTAT+AGG + chr7.2:51160807-51160826 None:intergenic 30.0%
!! AATTCAGGTGAAGTTTTATG+TGG + chr7.2:51160833-51160852 None:intergenic 30.0%
!! CAAAGGATATGAGAAGTATT+TGG + chr7.2:51159469-51159488 None:intergenic 30.0%
!!! ATGTCTCTTTTTTGTTACAC+AGG - chr7.2:51160334-51160353 MS.gene23175:CDS 30.0%
!!! ATTGTGATTGTTTTGATTGC+AGG - chr7.2:51159347-51159366 MS.gene23175:CDS 30.0%
!!! CAGCAATTTTTGAGACTATA+AGG - chr7.2:51161394-51161413 MS.gene23175:intron 30.0%
!!! TGTCTCTTTTTTGTTACACA+GGG - chr7.2:51160335-51160354 MS.gene23175:CDS 30.0%
!!! TTGTGATTGTTTTGATTGCA+GGG - chr7.2:51159348-51159367 MS.gene23175:CDS 30.0%
!!! TTTTGAGACTATAAGGAGAA+AGG - chr7.2:51161401-51161420 MS.gene23175:intron 30.0%
AAAAATACAATGTTTGCGGG+TGG - chr7.2:51159983-51160002 MS.gene23175:CDS 35.0%
AAAATACAATGTTTGCGGGT+GGG - chr7.2:51159984-51160003 MS.gene23175:CDS 35.0%
AACATGCCATCGTATTTGAT+GGG - chr7.2:51159413-51159432 MS.gene23175:CDS 35.0%
AGAAAGGAAGCAATCAGAAA+AGG - chr7.2:51161417-51161436 MS.gene23175:intron 35.0%
AGCAATTTCACACCTTTGAT+TGG - chr7.2:51159494-51159513 MS.gene23175:CDS 35.0%
ATAACAGAAAAAGATCCTGC+TGG + chr7.2:51161225-51161244 None:intergenic 35.0%
ATATCCAAGATCATCTTGGT+TGG - chr7.2:51160648-51160667 MS.gene23175:CDS 35.0%
ATCAAATACGATGGCATGTT+GGG + chr7.2:51159413-51159432 None:intergenic 35.0%
ATTCTGATAGGAATCGGAAA+TGG - chr7.2:51160479-51160498 MS.gene23175:CDS 35.0%
CCTCTTATCTTTGATGCTAA+AGG + chr7.2:51161300-51161319 None:intergenic 35.0%
CCTTTAGCATCAAAGATAAG+AGG - chr7.2:51161297-51161316 MS.gene23175:intron 35.0%
GAAACACTAGACATAGTCTT+TGG + chr7.2:51161570-51161589 None:intergenic 35.0%
GAATCATAAAAAGGAACCTG+AGG + chr7.2:51160193-51160212 None:intergenic 35.0%
GATCATCTTGGTTGGAAAAT+TGG - chr7.2:51160656-51160675 MS.gene23175:CDS 35.0%
GCGTTAATTCTGATAGGAAT+CGG - chr7.2:51160473-51160492 MS.gene23175:CDS 35.0%
GGAAAAAGTAACACCAAACT+TGG - chr7.2:51160258-51160277 MS.gene23175:CDS 35.0%
GTCGTTTCGACAAGTATTAT+TGG - chr7.2:51161715-51161734 MS.gene23175:CDS 35.0%
GTTCAATTGTTACCTCCAAA+AGG - chr7.2:51160048-51160067 MS.gene23175:CDS 35.0%
TAAGATCCCATCAAATACGA+TGG + chr7.2:51159422-51159441 None:intergenic 35.0%
TGAAGAAAATGGTTTGAAGG+AGG - chr7.2:51161989-51162008 MS.gene23175:CDS 35.0%
TGAAGTGATATGTCTGTCTA+AGG + chr7.2:51161190-51161209 None:intergenic 35.0%
TGTTGAAAATGTCTGCAATG+TGG - chr7.2:51161463-51161482 MS.gene23175:intron 35.0%
TTCCAAAGCTCTATGGTTAT+TGG + chr7.2:51160561-51160580 None:intergenic 35.0%
TTCCAATAACCATAGAGCTT+TGG - chr7.2:51160556-51160575 MS.gene23175:CDS 35.0%
TTGTTCCAACTGATAGACTA+AGG - chr7.2:51160882-51160901 MS.gene23175:intron 35.0%
! AGGTTCTTTTATCAGTTGCA+TGG - chr7.2:51159565-51159584 MS.gene23175:CDS 35.0%
! GATAAAATCATGAGTGCTGT+TGG + chr7.2:51160692-51160711 None:intergenic 35.0%
! GCTGAAGCATTCAATGTTAT+TGG - chr7.2:51161516-51161535 MS.gene23175:intron 35.0%
! TTTTCCAACCAAGATGATCT+TGG + chr7.2:51160655-51160674 None:intergenic 35.0%
!! CTTGGTTGGAAAATTGGTTT+TGG - chr7.2:51160662-51160681 MS.gene23175:CDS 35.0%
!! GCAATAAAAGCACCAATCAA+AGG + chr7.2:51159509-51159528 None:intergenic 35.0%
!! TCAAACTTTGAAATACCAGC+AGG - chr7.2:51161207-51161226 MS.gene23175:intron 35.0%
AAAAACGCTACTTCAAGCCA+AGG - chr7.2:51161657-51161676 MS.gene23175:CDS 40.0%
AAATACAATGTTTGCGGGTG+GGG - chr7.2:51159985-51160004 MS.gene23175:CDS 40.0%
AAATCCATCCTTCTTTGCCT+TGG + chr7.2:51161677-51161696 None:intergenic 40.0%
AAGAACCTATTCCAACACCT+AGG + chr7.2:51159553-51159572 None:intergenic 40.0%
ACAAAAACCACAAAGACCCA+AGG - chr7.2:51159202-51159221 MS.gene23175:CDS 40.0%
ACGGTTCAGCAATAAATCGT+TGG - chr7.2:51161040-51161059 MS.gene23175:intron 40.0%
AGCAAGAAAGAATAGGACAG+TGG + chr7.2:51160714-51160733 None:intergenic 40.0%
AGTGTTTCTTCTGCACTTTC+TGG - chr7.2:51161582-51161601 MS.gene23175:CDS 40.0%
ATTAACATTGGAGGCTCGTT+TGG - chr7.2:51161147-51161166 MS.gene23175:intron 40.0%
ATTTATTGCTGAACCGTCTG+AGG + chr7.2:51161037-51161056 None:intergenic 40.0%
CAAAAACCACAAAGACCCAA+GGG - chr7.2:51159203-51159222 MS.gene23175:CDS 40.0%
CAACATGCCATCGTATTTGA+TGG - chr7.2:51159412-51159431 MS.gene23175:CDS 40.0%
CACATGACTGCAATGAAAGA+TGG + chr7.2:51159621-51159640 None:intergenic 40.0%
CATAATAGCTCTCACTGGAT+TGG - chr7.2:51160622-51160641 MS.gene23175:CDS 40.0%
CATCAAATACGATGGCATGT+TGG + chr7.2:51159414-51159433 None:intergenic 40.0%
CCAATTCCCATTCTTCTCTT+CGG + chr7.2:51161342-51161361 None:intergenic 40.0%
CGAAGAGAAGAATGGGAATT+GGG - chr7.2:51161340-51161359 MS.gene23175:intron 40.0%
CTCTCTGCGTTAATTCTGAT+AGG - chr7.2:51160467-51160486 MS.gene23175:CDS 40.0%
CTTGCTAAGATTGCAAGTAC+AGG - chr7.2:51159380-51159399 MS.gene23175:CDS 40.0%
GAACAAGATATAGCCTCAGA+CGG - chr7.2:51161021-51161040 MS.gene23175:intron 40.0%
GAGTGAAGAAAATGGTTCCA+AGG - chr7.2:51161827-51161846 MS.gene23175:intron 40.0%
GATACCAATGATGAAAGGCA+TGG + chr7.2:51159240-51159259 None:intergenic 40.0%
GTGGAGAAGCAAGAAAGAAT+AGG + chr7.2:51160721-51160740 None:intergenic 40.0%
GTTATTCCATTGTGGTCAAC+AGG - chr7.2:51161111-51161130 MS.gene23175:intron 40.0%
TACAGTTGAATCTTCCTCCT+TGG + chr7.2:51161847-51161866 None:intergenic 40.0%
TAGTATGCAGTTGGGCTTAT+GGG - chr7.2:51161778-51161797 MS.gene23175:intron 40.0%
TATACGTAGGCTATGATCTC+TGG + chr7.2:51160084-51160103 None:intergenic 40.0%
TCCAAGGTGAGTGAAGAAAA+TGG - chr7.2:51161819-51161838 MS.gene23175:intron 40.0%
TCTGTCATAATAGCTCTCAC+TGG - chr7.2:51160617-51160636 MS.gene23175:CDS 40.0%
TGAAGAAAATGGTTCCAAGG+AGG - chr7.2:51161830-51161849 MS.gene23175:intron 40.0%
TGAATATAGACATGGGCACA+TGG - chr7.2:51159660-51159679 MS.gene23175:CDS 40.0%
TGAATTCAAGAATGGTGGTC+AGG - chr7.2:51161944-51161963 MS.gene23175:CDS 40.0%
TGCTGCTGATGAAGAAGAAA+TGG - chr7.2:51159172-51159191 MS.gene23175:CDS 40.0%
TGTGAAATTGCTAGCTGCAA+AGG + chr7.2:51159486-51159505 None:intergenic 40.0%
TTAGTATGCAGTTGGGCTTA+TGG - chr7.2:51161777-51161796 MS.gene23175:intron 40.0%
TTCTTCTGCACTTTCTGGAT+TGG - chr7.2:51161587-51161606 MS.gene23175:CDS 40.0%
! ACCATTTTCTTCACTCACCT+TGG + chr7.2:51161823-51161842 None:intergenic 40.0%
! AGTAACATTGCCATTTGACC+TGG + chr7.2:51160449-51160468 None:intergenic 40.0%
! GATCCGAGTCTATTTTGTGA+TGG + chr7.2:51160859-51160878 None:intergenic 40.0%
! GGTTAGCTGTAGCAAAATGA+AGG + chr7.2:51159448-51159467 None:intergenic 40.0%
! TCTGGTATATCGAACCCTTT+TGG + chr7.2:51160066-51160085 None:intergenic 40.0%
! TTAATTTTGTGGTTCGTGCG+TGG - chr7.2:51160944-51160963 MS.gene23175:intron 40.0%
!! GGTGAAGTTTTATGTGGCAA+TGG + chr7.2:51160827-51160846 None:intergenic 40.0%
!!! CTCGATTTTTTAGTACAGGG+CGG - chr7.2:51159754-51159773 MS.gene23175:CDS 40.0%
!!! TCGATTTTTTAGTACAGGGC+GGG - chr7.2:51159755-51159774 MS.gene23175:CDS 40.0%
ACTTCAAGCCAAGGCAAAGA+AGG - chr7.2:51161666-51161685 MS.gene23175:CDS 45.0%
AGAGGGAAACCAGTGAGTAT+CGG - chr7.2:51161315-51161334 MS.gene23175:intron 45.0%
ATACCACCCAAAGCAAGTTG+AGG + chr7.2:51161495-51161514 None:intergenic 45.0%
ATCAGCAACACCAGGTCAAA+TGG - chr7.2:51160436-51160455 MS.gene23175:CDS 45.0%
ATCGGTCCGAAGAGAAGAAT+GGG - chr7.2:51161333-51161352 MS.gene23175:intron 45.0%
CCGAAGAGAAGAATGGGAAT+TGG - chr7.2:51161339-51161358 MS.gene23175:intron 45.0%
CTGATAGGAATCGGAAATGG+TGG - chr7.2:51160482-51160501 MS.gene23175:CDS 45.0%
GTCACCATGCCTTTCATCAT+TGG - chr7.2:51159233-51159252 MS.gene23175:CDS 45.0%
GTGATTCCTGTTGACCACAA+TGG + chr7.2:51161120-51161139 None:intergenic 45.0%
TATCGGTCCGAAGAGAAGAA+TGG - chr7.2:51161332-51161351 MS.gene23175:intron 45.0%
TCAGCTGCATGGATGCAAAA+AGG + chr7.2:51160407-51160426 None:intergenic 45.0%
TGCAAAACCAGTGAACAAGC+TGG + chr7.2:51160768-51160787 None:intergenic 45.0%
! AGGTAAGTTAATAGCGGGGA+CGG + chr7.2:51159820-51159839 None:intergenic 45.0%
! CAAAGAACCAGCTTGTTCAC+TGG - chr7.2:51160758-51160777 MS.gene23175:CDS 45.0%
! CCTTTTCCCCGTTAAATTCG+GGG + chr7.2:51159706-51159725 None:intergenic 45.0%
! CGCCTTTTCCCCGTTAAATT+CGG + chr7.2:51159708-51159727 None:intergenic 45.0%
! CTTGCACCTCAACTTGCTTT+GGG - chr7.2:51161486-51161505 MS.gene23175:intron 45.0%
! GCCTTTTCCCCGTTAAATTC+GGG + chr7.2:51159707-51159726 None:intergenic 45.0%
! GGTATATCGAACCCTTTTGG+AGG + chr7.2:51160063-51160082 None:intergenic 45.0%
! TCTTATGTGGGTCGATTCCT+AGG - chr7.2:51159533-51159552 MS.gene23175:CDS 45.0%
! TTTTGCATCCATGCAGCTGA+AGG - chr7.2:51160407-51160426 MS.gene23175:CDS 45.0%
!! CGATTCCTAGGTGTTGGAAT+AGG - chr7.2:51159545-51159564 MS.gene23175:CDS 45.0%
!! TGCACTTTCTGGATTGGCAA+TGG - chr7.2:51161593-51161612 MS.gene23175:CDS 45.0%
!! AATTAATATTATGAAATTAT+TGG - chr7.2:51160288-51160307 MS.gene23175:CDS 5.0%
AAACCACAAAGACCCAAGGG+TGG - chr7.2:51159206-51159225 MS.gene23175:CDS 50.0%
ATGGTGACAAGACCACCCTT+GGG + chr7.2:51159221-51159240 None:intergenic 50.0%
ATGTACAGCCTTCAGCTGCA+TGG + chr7.2:51160418-51160437 None:intergenic 50.0%
CAAGCCAAGGCAAAGAAGGA+TGG - chr7.2:51161670-51161689 MS.gene23175:CDS 50.0%
CACAGGGAATGACACTGATG+TGG - chr7.2:51160351-51160370 MS.gene23175:CDS 50.0%
CCCCGAATTTAACGGGGAAA+AGG - chr7.2:51159703-51159722 MS.gene23175:CDS 50.0%
GCTGCATGGATGCAAAAAGG+AGG + chr7.2:51160404-51160423 None:intergenic 50.0%
GTTAACAGCCATGATCCCAG+CGG - chr7.2:51160373-51160392 MS.gene23175:CDS 50.0%
TTTCCCCGTTAAATTCGGGG+CGG + chr7.2:51159703-51159722 None:intergenic 50.0%
! GCTTGCACCTCAACTTGCTT+TGG - chr7.2:51161485-51161504 MS.gene23175:intron 50.0%
! GGTAAGTTAATAGCGGGGAC+GGG + chr7.2:51159819-51159838 None:intergenic 50.0%
! GTAAGTTAATAGCGGGGACG+GGG + chr7.2:51159818-51159837 None:intergenic 50.0%
!! TTTTTAGTACAGGGCGGGAC+CGG - chr7.2:51159760-51159779 MS.gene23175:CDS 50.0%
AACACTCACCCCACCTCCAA+TGG + chr7.2:51160031-51160050 None:intergenic 55.0%
ACAATGTTTGCGGGTGGGGT+GGG - chr7.2:51159989-51160008 MS.gene23175:CDS 55.0%
ACACTCACCCCACCTCCAAT+GGG + chr7.2:51160030-51160049 None:intergenic 55.0%
AGACCACCCTTGGGTCTTTG+TGG + chr7.2:51159212-51159231 None:intergenic 55.0%
CATGGTGACAAGACCACCCT+TGG + chr7.2:51159222-51159241 None:intergenic 55.0%
CTCTTCGGACCGATACTCAC+TGG + chr7.2:51161327-51161346 None:intergenic 55.0%
GGCTGTACATCAGCAACACC+AGG - chr7.2:51160428-51160447 MS.gene23175:CDS 55.0%
TACAATGTTTGCGGGTGGGG+TGG - chr7.2:51159988-51160007 MS.gene23175:CDS 55.0%
! GCACCTCAACTTGCTTTGGG+TGG - chr7.2:51161489-51161508 MS.gene23175:intron 55.0%
! GGGCACATGGCGTCTAGAAT+TGG - chr7.2:51159673-51159692 MS.gene23175:CDS 55.0%
! GTGGGTCGATTCCTAGGTGT+TGG - chr7.2:51159539-51159558 MS.gene23175:CDS 55.0%
! TTTTAGTACAGGGCGGGACC+GGG - chr7.2:51159761-51159780 MS.gene23175:CDS 55.0%
!! TCTGGATTGGCAATGGCTGC+CGG - chr7.2:51161600-51161619 MS.gene23175:CDS 55.0%
AAAAAGGAGGCTGCGCCGCT+GGG + chr7.2:51160391-51160410 None:intergenic 60.0%
AAACCCGTCCCCATTGGAGG+TGG - chr7.2:51160018-51160037 MS.gene23175:CDS 60.0%
AACCCGTCCCCATTGGAGGT+GGG - chr7.2:51160019-51160038 MS.gene23175:CDS 60.0%
CAATGTTTGCGGGTGGGGTG+GGG - chr7.2:51159990-51160009 MS.gene23175:CDS 60.0%
CACTCACCCCACCTCCAATG+GGG + chr7.2:51160029-51160048 None:intergenic 60.0%
CCCGTTAAATTCGGGGCGGA+CGG + chr7.2:51159699-51159718 None:intergenic 60.0%
CCGTCCGCCCCGAATTTAAC+GGG - chr7.2:51159696-51159715 MS.gene23175:CDS 60.0%
CGTCCGCCCCGAATTTAACG+GGG - chr7.2:51159697-51159716 MS.gene23175:CDS 60.0%
GCCGTCCGCCCCGAATTTAA+CGG - chr7.2:51159695-51159714 MS.gene23175:CDS 60.0%
GGCAATGGCTGCCGGAAACT+TGG - chr7.2:51161608-51161627 MS.gene23175:CDS 60.0%
TTTAGTACAGGGCGGGACCG+GGG - chr7.2:51159762-51159781 MS.gene23175:CDS 60.0%
! AGTTAATAGCGGGGACGGGG+TGG + chr7.2:51159815-51159834 None:intergenic 60.0%
! GTTAATAGCGGGGACGGGGT+GGG + chr7.2:51159814-51159833 None:intergenic 60.0%
ACCCCACCTCCAATGGGGAC+GGG + chr7.2:51160024-51160043 None:intergenic 65.0%
ACCCGTCCCCATTGGAGGTG+GGG - chr7.2:51160020-51160039 MS.gene23175:CDS 65.0%
CAAAAAGGAGGCTGCGCCGC+TGG + chr7.2:51160392-51160411 None:intergenic 65.0%
CACCCCACCTCCAATGGGGA+CGG + chr7.2:51160025-51160044 None:intergenic 65.0%
GGGAAACCCGTCCCCATTGG+AGG - chr7.2:51160015-51160034 MS.gene23175:CDS 65.0%
GGGGCGGGTATGATCATCCC+CGG + chr7.2:51159782-51159801 None:intergenic 65.0%
AGGCTGCGCCGCTGGGATCA+TGG + chr7.2:51160384-51160403 None:intergenic 70.0%
GCGGGGAAACCCGTCCCCAT+TGG - chr7.2:51160012-51160031 MS.gene23175:CDS 70.0%
TGTTTGCGGGTGGGGTGGGG+CGG - chr7.2:51159993-51160012 MS.gene23175:CDS 70.0%
ACGGGGTGGGTGTGGGTGCG+GGG + chr7.2:51159801-51159820 None:intergenic 75.0%
AGCGGGGACGGGGTGGGTGT+GGG + chr7.2:51159808-51159827 None:intergenic 75.0%
GACGGGGTGGGTGTGGGTGC+GGG + chr7.2:51159802-51159821 None:intergenic 75.0%
GGACGGGGTGGGTGTGGGTG+CGG + chr7.2:51159803-51159822 None:intergenic 75.0%
GTTTGCGGGTGGGGTGGGGC+GGG - chr7.2:51159994-51160013 MS.gene23175:CDS 75.0%
TAGCGGGGACGGGGTGGGTG+TGG + chr7.2:51159809-51159828 None:intergenic 75.0%
TTTGCGGGTGGGGTGGGGCG+GGG - chr7.2:51159995-51160014 MS.gene23175:CDS 75.0%
! GGGTGGGTGTGGGTGCGGGG+CGG + chr7.2:51159798-51159817 None:intergenic 80.0%
! GGTGGGTGTGGGTGCGGGGC+GGG + chr7.2:51159797-51159816 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 51159140 51162016 51159140 ID=MS.gene23175
chr7.2 mRNA 51159140 51162016 51159140 ID=MS.gene23175.t1;Parent=MS.gene23175
chr7.2 exon 51161902 51162016 51161902 ID=MS.gene23175.t1.exon1;Parent=MS.gene23175.t1
chr7.2 CDS 51161902 51162016 51161902 ID=cds.MS.gene23175.t1;Parent=MS.gene23175.t1
chr7.2 exon 51161570 51161787 51161570 ID=MS.gene23175.t1.exon2;Parent=MS.gene23175.t1
chr7.2 CDS 51161570 51161787 51161570 ID=cds.MS.gene23175.t1;Parent=MS.gene23175.t1
chr7.2 exon 51160253 51160800 51160253 ID=MS.gene23175.t1.exon3;Parent=MS.gene23175.t1
chr7.2 CDS 51160253 51160800 51160253 ID=cds.MS.gene23175.t1;Parent=MS.gene23175.t1
chr7.2 exon 51159140 51160169 51159140 ID=MS.gene23175.t1.exon4;Parent=MS.gene23175.t1
chr7.2 CDS 51159140 51160169 51159140 ID=cds.MS.gene23175.t1;Parent=MS.gene23175.t1
Gene Sequence

>MS.gene23175

ATGGACAAGGAACTTCAACTTTGTTCAGTTGATGCTGCTGATGAAGAAGAAATGGTTTCTCAACAAAAACCACAAAGACCCAAGGGTGGTCTTGTCACCATGCCTTTCATCATTGGTATCTTATCAATGACTTGCATGCATTTTTATTTTATTTTATTTTTACTTTTAATGAGCTTAAATTTTGATGTATAATATGGTTTTGTTGTTATTGTGATTGTTTTGATTGCAGGGAATGAAGCACTTGCTAAGATTGCAAGTACAGGACTAATGCCCAACATGCCATCGTATTTGATGGGATCTTACAACCTTCATTTTGCTACAGCTAACCAAATACTTCTCATATCCTTTGCAGCTAGCAATTTCACACCTTTGATTGGTGCTTTTATTGCAGATTCTTATGTGGGTCGATTCCTAGGTGTTGGAATAGGTTCTTTTATCAGTTGCATGGTAATCTTATATATTTAGTTTTGATTTACTTCCATCTTTCATTGCAGTCATGTGTTTTTCTTATCTTTTGACTTGAATATAGACATGGGCACATGGCGTCTAGAATTGGCCGTCCGCCCCGAATTTAACGGGGAAAAGGCGATTTAAGTTGTGCTGATGCGAGAAAACTCGATTTTTTAGTACAGGGCGGGACCGGGGATGATCATACCCGCCCCGCACCCACACCCACCCCGTCCCCGCTATTAACTTACCTTATTATATTTAATAATATTATACCTATTAACTTACAAATAGGTGTCAATCACTTTTAATATATTGTTACTCTATTGAAACATGTTTATCAGAGTTATCTTACTTTTTTGAAAGAGATTTATTTGATTTTTTTTTTTTTATTTTAAAAATACAATGTTTGCGGGTGGGGTGGGGCGGGGAAACCCGTCCCCATTGGAGGTGGGGTGAGTGTTCAATTGTTACCTCCAAAAGGGTTCGATATACCAGAGATCATAGCCTACGTATATTGAGTTCATATCAATTAACTAAATATTTAATCGATTATTATACTAGTTAAATAAAATATTCAACTATGAGATTTTGATAAATTATCCTCAGGTTCCTTTTTATGATTCAAAAGTGATATATATGTTCACTTGTATGAACAAGAATCATACAACGGAAAAAGTAACACCAAACTTGGTATATTCAATTAATATTATGAAATTATTGGTATAATGAGAAAAGTTGTTAATGATGTCTCTTTTTTGTTACACAGGGAATGACACTGATGTGGTTAACAGCCATGATCCCAGCGGCGCAGCCTCCTTTTTGCATCCATGCAGCTGAAGGCTGTACATCAGCAACACCAGGTCAAATGGCAATGTTACTCTCTGCGTTAATTCTGATAGGAATCGGAAATGGTGGTATTTCATGCTCTATAGCATTTGGTGCTGACCAAGTGAATAGAAAAGATAATTCCAATAACCATAGAGCTTTGGAAATATTTTTTAGTTGGTATTACGCTTTCACAACTATTTCTGTCATAATAGCTCTCACTGGATTGGTATATATCCAAGATCATCTTGGTTGGAAAATTGGTTTTGGTGTTCCAACAGCACTCATGATTTTATCCACTGTCCTATTCTTTCTTGCTTCTCCACTTTATGTGAAAATTACACAAAGAACCAGCTTGTTCACTGGTTTTGCACAAGTATTTATTGCTGCCTATAAGAACAGAAAACTTCCATTGCCACATAAAACTTCACCTGAATTTTACCATCACAAAATAGACTCGGATCTTGTTGTTCCAACTGATAGACTAAGGTATATATATAGAATCAATTTACTATACCATCTTTTTAGCTTAATTTTGTGGTTCGTGCGTGGTTAATTATTTTCATTTTCAGGTTTCTAAATAAAGCTTCTGTTATCAAGGATCGTGAACAAGATATAGCCTCAGACGGTTCAGCAATAAATCGTTGGAGTCTTTGCACAGTAGATCAAGTTGAAGAATTGAAAGCCATTATTAAAGTTATTCCATTGTGGTCAACAGGAATCACAATGTCTATTAACATTGGAGGCTCGTTTGGATTGCTGCAAGCTAAATCCTTAGACAGACATATCACTTCAAACTTTGAAATACCAGCAGGATCTTTTTCTGTTATCTTGATATTTGCTGCATTAATATGGATAATTATCTATGATCGTGTTCTTATTCCTTTAGCATCAAAGATAAGAGGGAAACCAGTGAGTATCGGTCCGAAGAGAAGAATGGGAATTGGGTTGTTTTTTAATTTTCTTCAATTGGTAGTTGCAGCAATTTTTGAGACTATAAGGAGAAAGGAAGCAATCAGAAAAGGATATTTGAATGATACTCATGGAGTGTTGAAAATGTCTGCAATGTGGCTTGCACCTCAACTTGCTTTGGGTGGTATAGCTGAAGCATTCAATGTTATTGGCCAAAATGAGTTTTATTACAAAGAGTTTCCAAAGACTATGTCTAGTGTTTCTTCTGCACTTTCTGGATTGGCAATGGCTGCCGGAAACTTGGTATCTTCTTTTGTACTCAGCGTTATAAAAAACGCTACTTCAAGCCAAGGCAAAGAAGGATGGATTTCTGATAATATTAACAAGGGTCGTTTCGACAAGTATTATTGGGTTCTAGTTGGAATTAATGTTCTGAATCTACTGTATTATTTAGTATGCAGTTGGGCTTATGGGCCTACAATTGATCAAATGTCCAAGGTGAGTGAAGAAAATGGTTCCAAGGAGGAAGATTCAACTGTATTCAAGCAAATGAATCCTCTATTTGATGACAAAGACAAAGGTAGTGATGAAACTAGTTCAAAGGAGAAAGAGTTAACTGAATTCAAGAATGGTGGTCAGGTTGAGAAAGTATTCAAGATTAGTGAAGAAAATGGTTTGAAGGAGGAATAG

Protein sequence

>MS.gene23175.t1

MDKELQLCSVDAADEEEMVSQQKPQRPKGGLVTMPFIIGNEALAKIASTGLMPNMPSYLMGSYNLHFATANQILLISFAASNFTPLIGAFIADSYVGRFLGVGIGSFISCMGMTLMWLTAMIPAAQPPFCIHAAEGCTSATPGQMAMLLSALILIGIGNGGISCSIAFGADQVNRKDNSNNHRALEIFFSWYYAFTTISVIIALTGLVYIQDHLGWKIGFGVPTALMILSTVLFFLASPLYVKITQRTSLFTGFAQVFIAAYKNRKLPLPHKTSPEFYHHKIDSDLVVPTDRLRFLNKASVIKDREQDIASDGSAINRWSLCTVDQVEELKAIIKVIPLWSTGITMSINIGGSFGLLQAKSLDRHITSNFEIPAGSFSVILIFAALIWIIIYDRVLIPLASKIRGKPVSIGPKRRMGIGLFFNFLQLVVAAIFETIRRKEAIRKGYLNDTHGVLKMSAMWLAPQLALGGIAEAFNVIGQNEFYYKEFPKTMSSVSSALSGLAMAAGNLVSSFVLSVIKNATSSQGKEGWISDNINKGRFDKYYWVLVGINVLNLLYYLVCSWAYGPTIDQMSKVSEENGSKEEDSTVFKQMNPLFDDKDKGSDETSSKEKELTEFKNGGQVEKVFKISEENGLKEE