AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09666


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09666.t1 MTR_5g014150 98.678 605 8 0 1 605 1 605 0.0 1237
MS.gene09666.t1 MTR_4g098800 80.000 605 108 3 1 605 1 592 0.0 1002
MS.gene09666.t1 MTR_4g098800 79.112 608 117 3 1 605 57 657 0.0 997
MS.gene09666.t1 MTR_7g010820 68.089 586 173 5 23 597 5 587 0.0 803
MS.gene09666.t1 MTR_1g116930 59.310 580 221 8 20 599 4 568 0.0 685
MS.gene09666.t1 MTR_7g005930 60.579 553 208 5 36 588 27 569 0.0 680
MS.gene09666.t1 MTR_7g013270 59.720 571 213 7 36 599 82 642 0.0 660
MS.gene09666.t1 MTR_3g462710 44.425 565 305 5 23 585 3 560 4.53e-169 493
MS.gene09666.t1 MTR_4g024930 46.101 577 282 8 14 588 6 555 3.38e-165 483
MS.gene09666.t1 MTR_7g067010 43.009 565 313 5 23 586 3 559 2.04e-163 479
MS.gene09666.t1 MTR_4g015080 42.179 569 318 6 28 594 18 577 3.37e-159 468
MS.gene09666.t1 MTR_7g098200 38.664 569 335 6 21 585 6 564 3.62e-143 428
MS.gene09666.t1 MTR_7g098160 36.979 576 345 6 16 585 5 568 3.69e-141 423
MS.gene09666.t1 MTR_7g098040 38.153 574 341 5 16 585 6 569 6.50e-139 418
MS.gene09666.t1 MTR_1g075440 36.637 565 344 5 25 585 9 563 7.95e-139 417
MS.gene09666.t1 MTR_3g112460 37.801 582 333 9 23 599 2 559 1.06e-138 416
MS.gene09666.t1 MTR_7g098200 38.313 569 327 7 21 585 6 554 1.89e-138 416
MS.gene09666.t1 MTR_7g098090 36.442 579 345 7 16 583 5 571 5.37e-134 405
MS.gene09666.t1 MTR_1g042310 35.929 565 352 4 23 585 5 561 6.69e-134 404
MS.gene09666.t1 MTR_3g112470 37.113 582 337 9 23 599 2 559 7.32e-133 400
MS.gene09666.t1 MTR_7g098180 37.390 567 338 7 25 585 12 567 2.69e-131 397
MS.gene09666.t1 MTR_3g462710 43.956 455 246 5 133 585 4 451 2.89e-131 392
MS.gene09666.t1 MTR_3g069500 36.598 582 346 9 11 589 2 563 7.70e-131 395
MS.gene09666.t1 MTR_3g112450 37.522 565 330 7 27 586 6 552 2.13e-130 394
MS.gene09666.t1 MTR_5g012270 37.797 590 351 10 16 597 2 583 2.88e-130 394
MS.gene09666.t1 MTR_1g041815 35.763 590 360 6 26 605 9 589 4.38e-129 392
MS.gene09666.t1 MTR_7g098220 38.328 574 340 5 16 585 2 565 7.41e-128 389
MS.gene09666.t1 MTR_5g012290 37.197 578 352 6 28 599 11 583 4.40e-127 386
MS.gene09666.t1 MTR_1g041835 36.299 562 347 4 26 585 9 561 7.68e-127 385
MS.gene09666.t1 MTR_1g041875 35.169 563 350 4 26 587 11 559 6.47e-126 383
MS.gene09666.t1 MTR_7g098230 35.150 532 331 5 58 585 40 561 3.51e-124 379
MS.gene09666.t1 MTR_4g114340 39.362 564 323 8 28 586 8 557 1.33e-122 374
MS.gene09666.t1 MTR_1g042310 36.000 525 326 4 63 585 1 517 1.33e-122 374
MS.gene09666.t1 MTR_7g065080 35.140 572 350 9 21 589 8 561 1.50e-122 374
MS.gene09666.t1 MTR_3g069440 35.929 565 345 9 30 589 19 571 1.78e-122 374
MS.gene09666.t1 MTR_1g042310 36.000 525 326 4 63 585 8 524 1.79e-122 373
MS.gene09666.t1 MTR_4g019580 34.583 587 366 10 6 589 1 572 9.24e-122 373
MS.gene09666.t1 MTR_5g055000 36.491 570 350 8 42 605 16 579 2.58e-121 371
MS.gene09666.t1 MTR_4g101380 36.581 585 359 10 23 599 6 586 1.89e-120 369
MS.gene09666.t1 MTR_3g069420 34.021 582 367 9 13 589 3 572 2.10e-119 367
MS.gene09666.t1 MTR_7g098220 38.899 527 308 5 63 585 5 521 2.18e-116 357
MS.gene09666.t1 MTR_3g072300 34.542 579 358 10 25 596 5 569 2.97e-116 358
MS.gene09666.t1 MTR_1g041885 36.149 509 310 4 63 570 1 495 3.59e-116 356
MS.gene09666.t1 MTR_4g107580 33.793 580 365 6 15 586 3 571 7.54e-116 358
MS.gene09666.t1 MTR_3g005010 37.500 576 311 11 19 585 5 540 9.90e-115 353
MS.gene09666.t1 MTR_4g033325 34.957 575 338 9 16 585 3 546 5.91e-111 343
MS.gene09666.t1 MTR_0294s0020 35.652 575 334 9 16 585 3 546 8.98e-111 343
MS.gene09666.t1 MTR_4g107530 32.508 606 387 10 12 602 4 602 1.70e-110 344
MS.gene09666.t1 MTR_4g107510 32.765 586 378 9 11 586 3 582 1.71e-110 343
MS.gene09666.t1 MTR_5g038060 34.342 562 354 9 42 593 29 585 6.22e-109 340
MS.gene09666.t1 MTR_7g098150 37.143 455 273 4 16 467 5 449 6.66e-109 336
MS.gene09666.t1 MTR_5g085850 35.971 556 332 6 30 582 16 550 4.17e-108 337
MS.gene09666.t1 MTR_7g088825 32.470 579 381 8 25 599 3 575 2.11e-107 336
MS.gene09666.t1 MTR_7g088790 33.276 577 373 8 29 598 14 585 5.37e-107 335
MS.gene09666.t1 MTR_7g098200 38.074 457 269 6 133 585 4 450 8.88e-107 330
MS.gene09666.t1 MTR_4g033330 35.409 562 326 11 16 570 2 533 3.20e-106 330
MS.gene09666.t1 MTR_3g014790 33.737 578 341 12 30 593 5 554 1.28e-105 330
MS.gene09666.t1 MTR_8g469470 31.295 556 373 4 38 586 26 579 6.97e-105 329
MS.gene09666.t1 MTR_4g033315 34.375 576 342 9 16 585 3 548 2.08e-103 324
MS.gene09666.t1 MTR_4g033310 34.375 576 342 9 16 585 3 548 2.08e-103 324
MS.gene09666.t1 MTR_7g006540 33.813 556 349 8 43 586 62 610 7.81e-103 325
MS.gene09666.t1 MTR_4g033375 36.220 508 291 9 29 531 17 496 9.00e-103 321
MS.gene09666.t1 MTR_2g005130 33.922 566 347 8 23 585 19 560 1.47e-102 323
MS.gene09666.t1 MTR_7g065080 35.102 490 297 9 103 589 3 474 3.53e-102 319
MS.gene09666.t1 MTR_2g017750 31.864 590 389 8 16 593 5 593 1.15e-101 321
MS.gene09666.t1 MTR_7g088820 30.862 580 392 7 24 599 5 579 4.74e-101 319
MS.gene09666.t1 MTR_4g033395 34.791 526 302 11 16 531 2 496 1.87e-100 315
MS.gene09666.t1 MTR_1g085090 32.264 592 358 11 30 599 3 573 2.73e-100 317
MS.gene09666.t1 MTR_8g038880 32.628 567 348 9 43 599 19 561 3.38e-100 316
MS.gene09666.t1 MTR_8g469480 33.516 546 351 9 48 586 42 582 1.34e-99 315
MS.gene09666.t1 MTR_7g088820 32.108 517 342 7 87 599 6 517 1.17e-96 306
MS.gene09666.t1 MTR_8g087780 32.991 585 379 8 25 598 2 584 1.29e-95 305
MS.gene09666.t1 MTR_8g469310 32.635 573 353 7 31 586 13 569 1.46e-95 304
MS.gene09666.t1 MTR_5g038190 30.265 565 380 7 29 586 9 566 1.98e-95 304
MS.gene09666.t1 MTR_7g111260 31.463 588 366 10 21 604 4 558 7.23e-95 303
MS.gene09666.t1 MTR_4g123537 33.565 575 355 10 15 586 18 568 1.14e-94 303
MS.gene09666.t1 MTR_5g038380 31.218 583 370 9 21 586 4 572 2.76e-93 298
MS.gene09666.t1 MTR_3g100980 29.840 563 373 7 38 594 10 556 4.81e-92 295
MS.gene09666.t1 MTR_4g107670 30.035 576 368 10 30 586 10 569 5.18e-91 292
MS.gene09666.t1 MTR_4g107610 30.756 569 380 8 16 578 2 562 3.35e-90 291
MS.gene09666.t1 MTR_8g087810 33.106 586 378 9 25 598 2 585 1.30e-88 286
MS.gene09666.t1 MTR_7g064780 28.814 590 405 8 15 599 2 581 1.39e-88 286
MS.gene09666.t1 MTR_7g088820 32.068 474 313 7 130 599 1 469 7.54e-87 279
MS.gene09666.t1 MTR_1g026740 30.855 538 355 9 54 585 27 553 4.22e-86 279
MS.gene09666.t1 MTR_8g103233 29.837 553 375 7 41 589 14 557 7.20e-86 279
MS.gene09666.t1 MTR_3g100980 28.426 591 373 8 38 594 10 584 1.04e-85 279
MS.gene09666.t1 MTR_4g033325 35.831 427 249 7 164 585 16 422 3.74e-85 273
MS.gene09666.t1 MTR_4g033325 35.831 427 249 7 164 585 42 448 5.82e-85 273
MS.gene09666.t1 MTR_4g033385 34.732 429 254 7 164 585 40 449 3.02e-82 266
MS.gene09666.t1 MTR_1g026750 30.442 565 376 8 41 599 15 568 8.38e-82 268
MS.gene09666.t1 MTR_2g101640 28.623 552 380 9 54 598 33 577 5.97e-80 265
MS.gene09666.t1 MTR_1g026770 29.015 548 378 7 54 599 25 563 1.60e-79 262
MS.gene09666.t1 MTR_1g057460 29.231 585 382 13 6 585 7 564 2.95e-79 261
MS.gene09666.t1 MTR_1g009200 28.715 599 398 14 16 601 2 584 1.62e-77 257
MS.gene09666.t1 MTR_4g011280 28.188 596 408 12 10 599 2 583 1.87e-77 257
MS.gene09666.t1 MTR_1g057460 31.557 488 303 12 103 585 32 493 2.09e-76 252
MS.gene09666.t1 MTR_7g064800 28.214 599 410 10 16 604 3 591 3.54e-76 254
MS.gene09666.t1 MTR_2g101610 27.978 554 386 8 54 602 37 582 2.06e-74 250
MS.gene09666.t1 MTR_2g101590 27.798 554 387 8 54 602 36 581 8.69e-73 246
MS.gene09666.t1 MTR_2g101650 26.773 564 398 9 42 599 22 576 2.52e-72 243
MS.gene09666.t1 MTR_0236s0050 30.801 487 308 12 103 585 32 493 5.29e-72 240
MS.gene09666.t1 MTR_2g093160 30.212 566 366 11 29 586 1 545 4.19e-71 239
MS.gene09666.t1 MTR_6g008690 29.130 563 343 11 44 585 6 533 1.42e-70 237
MS.gene09666.t1 MTR_2g093180 30.159 567 366 10 29 586 1 546 8.52e-69 233
MS.gene09666.t1 MTR_7g098210 30.303 528 274 11 63 585 1 439 1.29e-68 229
MS.gene09666.t1 MTR_2g093640 29.145 573 363 11 29 586 1 545 1.43e-67 229
MS.gene09666.t1 MTR_2g101560 29.084 557 377 8 54 602 37 583 1.28e-65 226
MS.gene09666.t1 MTR_7g052600 30.565 566 350 10 21 585 2 525 2.39e-65 223
MS.gene09666.t1 MTR_7g051830 30.212 566 352 10 21 585 2 525 5.39e-64 219
MS.gene09666.t1 MTR_7g051880 28.975 566 359 11 21 585 2 525 3.83e-59 206
MS.gene09666.t1 MTR_4g033310 35.379 277 166 4 312 585 218 484 1.28e-51 185
MS.gene09666.t1 MTR_4g033310 35.354 198 117 2 16 213 3 189 2.37e-30 125
MS.gene09666.t1 MTR_1g009170 24.627 402 245 11 171 567 9 357 1.25e-33 132
MS.gene09666.t1 MTR_3g065350 35.976 164 99 2 357 520 1 158 4.16e-27 108
MS.gene09666.t1 MTR_4g033390 38.554 83 51 0 503 585 30 112 1.43e-12 65.5
MS.gene09666.t1 MTR_8g091265 32.710 107 70 2 316 420 3 109 2.01e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09666.t1 AT1G32450 73.710 601 148 3 1 598 1 594 0.0 924
MS.gene09666.t1 AT4G21680 68.366 569 173 4 25 589 9 574 0.0 793
MS.gene09666.t1 AT5G19640 56.610 590 235 5 16 604 31 600 0.0 670
MS.gene09666.t1 AT3G54140 43.717 565 311 5 23 586 3 561 2.11e-172 502
MS.gene09666.t1 AT3G54140 43.717 565 311 5 23 586 3 561 2.11e-172 502
MS.gene09666.t1 AT2G02040 43.548 558 309 4 30 586 27 579 1.04e-168 493
MS.gene09666.t1 AT1G62200 42.123 584 325 7 6 586 13 586 2.58e-164 482
MS.gene09666.t1 AT1G62200 40.131 613 325 8 6 586 13 615 1.08e-157 466
MS.gene09666.t1 AT1G62200 40.131 613 325 8 6 586 27 629 1.69e-157 466
MS.gene09666.t1 AT5G01180 39.929 566 332 5 21 585 2 560 5.87e-157 462
MS.gene09666.t1 AT5G01180 39.929 566 332 5 21 585 2 560 5.87e-157 462
MS.gene09666.t1 AT5G01180 39.929 566 332 5 21 585 2 560 5.87e-157 462
MS.gene09666.t1 AT2G02020 38.869 566 299 7 16 579 14 534 4.03e-139 416
MS.gene09666.t1 AT2G26690 36.897 580 351 7 28 605 8 574 1.43e-125 382
MS.gene09666.t1 AT5G46050 35.501 569 352 7 21 585 4 561 5.83e-125 380
MS.gene09666.t1 AT5G46040 35.026 571 354 9 21 586 4 562 1.02e-122 375
MS.gene09666.t1 AT3G54450 35.915 568 331 10 42 599 11 555 7.91e-121 369
MS.gene09666.t1 AT1G12110 37.119 590 351 10 21 600 5 584 4.86e-120 368
MS.gene09666.t1 AT3G53960 34.256 578 366 9 16 589 9 576 2.13e-117 362
MS.gene09666.t1 AT2G02020 35.866 566 295 9 16 579 14 513 5.81e-117 358
MS.gene09666.t1 AT2G37900 33.333 573 364 7 19 589 13 569 5.86e-117 360
MS.gene09666.t1 AT2G26690 36.727 550 333 7 58 605 5 541 3.19e-116 357
MS.gene09666.t1 AT2G26690 37.153 541 325 7 67 605 2 529 4.44e-116 356
MS.gene09666.t1 AT2G40460 35.626 567 340 10 28 587 8 556 1.04e-112 349
MS.gene09666.t1 AT1G69870 33.157 567 367 8 41 599 48 610 1.84e-112 350
MS.gene09666.t1 AT5G13400 34.043 564 356 7 33 586 52 609 1.16e-108 340
MS.gene09666.t1 AT1G59740 34.775 601 361 12 7 597 3 582 2.00e-108 338
MS.gene09666.t1 AT1G68570 34.790 595 364 13 15 600 2 581 2.30e-107 335
MS.gene09666.t1 AT1G68570 35.443 553 341 10 57 600 6 551 2.08e-105 330
MS.gene09666.t1 AT1G72140 34.159 565 324 8 32 585 22 549 3.35e-103 323
MS.gene09666.t1 AT1G33440 36.077 571 335 10 24 585 18 567 7.89e-102 321
MS.gene09666.t1 AT1G18880 32.264 561 365 9 48 599 23 577 1.15e-100 318
MS.gene09666.t1 AT1G72125 33.913 575 349 9 18 585 3 553 1.24e-100 317
MS.gene09666.t1 AT1G27080 33.512 561 353 10 44 599 14 559 1.29e-100 317
MS.gene09666.t1 AT2G37900 33.267 505 319 7 87 589 2 490 4.79e-100 313
MS.gene09666.t1 AT3G21670 34.286 560 342 7 30 582 12 552 7.13e-100 316
MS.gene09666.t1 AT1G22540 32.979 564 346 8 32 590 18 554 2.05e-97 308
MS.gene09666.t1 AT5G46050 36.304 460 278 7 130 585 1 449 3.97e-97 305
MS.gene09666.t1 AT1G72120 33.043 575 350 9 18 585 3 549 1.93e-96 306
MS.gene09666.t1 AT1G72130 34.909 550 304 9 45 585 26 530 3.03e-96 305
MS.gene09666.t1 AT5G62680 32.182 550 356 9 48 586 47 590 5.86e-96 306
MS.gene09666.t1 AT3G47960 31.145 594 375 11 4 586 36 606 3.61e-95 305
MS.gene09666.t1 AT1G27080 33.083 532 336 10 73 599 1 517 1.78e-93 298
MS.gene09666.t1 AT1G22550 32.702 581 348 10 19 585 5 556 1.14e-90 291
MS.gene09666.t1 AT1G22570 33.214 557 340 10 19 566 5 538 1.02e-89 288
MS.gene09666.t1 AT1G69850 30.324 587 391 8 21 593 2 584 4.65e-87 282
MS.gene09666.t1 AT5G62730 30.835 587 356 12 17 585 28 582 5.71e-87 282
MS.gene09666.t1 AT1G22570 33.984 512 306 10 64 566 13 501 2.10e-84 273
MS.gene09666.t1 AT1G27040 29.381 565 383 6 30 591 13 564 5.53e-83 271
MS.gene09666.t1 AT1G27040 29.381 565 383 6 30 591 9 560 6.94e-83 271
MS.gene09666.t1 AT1G52190 28.419 563 376 10 41 585 13 566 2.61e-81 268
MS.gene09666.t1 AT5G62730 30.741 553 334 11 50 585 3 523 6.37e-81 265
MS.gene09666.t1 AT3G45720 28.731 536 355 7 66 598 41 552 1.78e-80 264
MS.gene09666.t1 AT3G16180 29.451 601 391 14 16 599 2 586 6.52e-80 263
MS.gene09666.t1 AT3G45650 29.138 580 376 11 24 599 2 550 2.76e-79 261
MS.gene09666.t1 AT3G45680 28.897 571 378 9 30 598 8 552 4.97e-79 260
MS.gene09666.t1 AT3G45710 29.264 557 369 7 44 598 21 554 9.49e-79 259
MS.gene09666.t1 AT1G27040 29.609 537 362 6 58 591 9 532 5.45e-78 257
MS.gene09666.t1 AT5G14940 29.359 562 329 15 64 599 27 546 1.20e-76 254
MS.gene09666.t1 AT1G72130 34.234 444 248 7 151 585 4 412 4.94e-75 246
MS.gene09666.t1 AT1G72130 34.234 444 248 7 151 585 4 412 4.94e-75 246
MS.gene09666.t1 AT3G45660 29.020 541 353 10 62 598 39 552 8.09e-75 249
MS.gene09666.t1 AT3G45660 29.020 541 353 10 62 598 39 552 8.09e-75 249
MS.gene09666.t1 AT3G45650 28.053 606 375 12 24 599 2 576 1.20e-74 249
MS.gene09666.t1 AT3G45660 29.020 541 353 10 62 598 60 573 1.28e-74 249
MS.gene09666.t1 AT5G28470 27.687 549 388 5 41 587 14 555 1.94e-74 248
MS.gene09666.t1 AT1G69860 30.459 545 354 11 48 586 22 547 4.95e-74 247
MS.gene09666.t1 AT3G45700 27.599 558 372 8 43 598 15 542 4.51e-72 241
MS.gene09666.t1 AT5G28470 27.505 549 387 6 41 587 14 553 1.45e-71 241
MS.gene09666.t1 AT3G25260 27.828 557 345 11 34 585 11 515 7.30e-67 227
MS.gene09666.t1 AT3G01350 27.778 558 354 12 64 596 27 560 3.00e-65 224
MS.gene09666.t1 AT3G45690 26.297 559 347 10 43 600 17 511 2.85e-63 217
MS.gene09666.t1 AT3G25280 26.655 574 362 14 17 585 2 521 6.89e-57 200
MS.gene09666.t1 AT2G38100 23.993 546 368 16 62 599 9 515 1.55e-33 135
MS.gene09666.t1 AT2G38100 23.993 546 368 16 62 599 15 521 1.72e-33 135
MS.gene09666.t1 AT2G38100 23.881 536 362 15 72 599 2 499 1.79e-33 134
MS.gene09666.t1 AT5G11570 30.000 250 163 5 338 585 237 476 1.40e-29 122
MS.gene09666.t1 AT5G11570 30.093 216 144 4 54 266 23 234 3.07e-22 100

Find 161 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGGAACAGGCGCCTTTC+TGG 0.168501 5.2:+6161000 None:intergenic
TAAAACATGTGCTGTCTTTC+AGG 0.175129 5.2:-6161960 MS.gene09666:CDS
CTTTCCTAAGTGACTCTTAT+TGG 0.215786 5.2:-6161991 MS.gene09666:CDS
ACTTCTTCAACTTGACTTAC+AGG 0.233280 5.2:+6160963 None:intergenic
TACTGAGACTCCTTCCAATT+TGG 0.238205 5.2:-6160932 MS.gene09666:CDS
CTGGACTAGTTGAATGTTAT+AGG 0.257127 5.2:-6160635 MS.gene09666:CDS
GAATGTGGGCTCTTGGCTTC+TGG 0.265662 5.2:-6161510 MS.gene09666:CDS
TTTCCTAAGTGACTCTTATT+GGG 0.274400 5.2:-6161990 MS.gene09666:CDS
AGCTGACCATCTTCCAGATT+TGG 0.275707 5.2:+6165146 None:intergenic
CCAGATTTGGCTCTTATTGC+AGG 0.276985 5.2:+6165159 None:intergenic
TGACCTTTATTGAGGTTTAC+TGG 0.278086 5.2:+6160339 None:intergenic
ATCCCTCAGTATGCACTTAT+AGG 0.280570 5.2:-6160546 MS.gene09666:CDS
CTTTGCAGTGGCGGCAGTCT+TGG 0.311213 5.2:+6160598 None:intergenic
GATTCATTCCCACAACCTTT+AGG 0.315220 5.2:+6161772 None:intergenic
TCTACCTAGCTTTGAACTTT+GGG 0.317823 5.2:-6161576 MS.gene09666:CDS
CGAGTACTTTGAGCATCTTC+TGG 0.327628 5.2:-6160572 MS.gene09666:CDS
CCACTTTGCACATGCAATAT+AGG 0.335349 5.2:+6160263 None:intergenic
TTCTACCTAGCTTTGAACTT+TGG 0.355047 5.2:-6161577 MS.gene09666:CDS
GAAAACCACCGAGTATATTA+TGG 0.363778 5.2:+6160902 None:intergenic
CTTGGCTTCTGGCTGTCTGC+AGG 0.364129 5.2:-6161499 MS.gene09666:CDS
CAACCGAATATTGCCACATT+CGG 0.367343 5.2:-6161664 MS.gene09666:CDS
CAACTATGTAAGTAGCTTAC+TGG 0.367530 5.2:-6160412 MS.gene09666:CDS
TCAATAAAGGTCACCTAGAT+AGG 0.368292 5.2:-6160329 MS.gene09666:CDS
AAACAATATCAGTGCGATAA+AGG 0.368557 5.2:+6161471 None:intergenic
TCAGAAGAATTGACTCTAGA+TGG 0.370202 5.2:-6165204 MS.gene09666:CDS
TCGATCTATCTCATTGCCTT+GGG 0.371691 5.2:-6161700 MS.gene09666:CDS
GCACTGATATTGTTTCTTGT+TGG 0.378724 5.2:-6161463 MS.gene09666:CDS
ATTATGGTGCAGAGCCAAAT+TGG 0.381296 5.2:+6160918 None:intergenic
TTTGTTGTGATGAAGGTTCT+TGG 0.383790 5.2:-6161060 MS.gene09666:intron
AACCGAATATTGCCACATTC+GGG 0.389216 5.2:-6161663 MS.gene09666:CDS
TTGATTAAACCTAAAGGTTG+TGG 0.389825 5.2:-6161781 MS.gene09666:CDS
TACATAGTTGCCGAGGGAAA+TGG 0.392484 5.2:+6160425 None:intergenic
GCCCCGAATGTGGCAATATT+CGG 0.395016 5.2:+6161661 None:intergenic
TACAAGTCATCTCCATTTGA+TGG 0.396660 5.2:+6161343 None:intergenic
CCAGATGGCTTAAAGAGTTT+CGG 0.398986 5.2:-6160468 MS.gene09666:CDS
CCGAAACTCTTTAAGCCATC+TGG 0.412448 5.2:+6160468 None:intergenic
CTCGATCTATCTCATTGCCT+TGG 0.417455 5.2:-6161701 MS.gene09666:CDS
GATGGAAGTGTTGATTTCAA+TGG 0.424543 5.2:-6165186 MS.gene09666:CDS
TGATTAAACCTAAAGGTTGT+GGG 0.432667 5.2:-6161780 MS.gene09666:CDS
CCATTTGCTCACATTGTTAG+CGG 0.435931 5.2:+6162048 None:intergenic
TTTGTCCTACCACCCTTGTC+AGG 0.440304 5.2:+6162083 None:intergenic
AAAGTTGAAATGCCATCAAA+TGG 0.443101 5.2:-6161355 MS.gene09666:CDS
CCTGCAATAAGAGCCAAATC+TGG 0.443888 5.2:-6165159 MS.gene09666:CDS
GAGACGCCATGGGTTGGAAC+AGG 0.445766 5.2:+6160989 None:intergenic
CACCATTCTCGTCTATTTCG+AGG 0.447297 5.2:-6161539 MS.gene09666:CDS
AGAGGAAGTAAAACCTATCT+AGG 0.447626 5.2:+6160316 None:intergenic
CTCTTCTTGATTAAACCTAA+AGG 0.452670 5.2:-6161787 MS.gene09666:CDS
TTGATGCAGCAACAAGGACT+TGG 0.457746 5.2:+6161386 None:intergenic
CTCGTCTATTTCGAGGATGA+AGG 0.458526 5.2:-6161532 MS.gene09666:CDS
TATCTCATTGCCTTGGGGAA+TGG 0.461561 5.2:-6161694 MS.gene09666:CDS
ATGTGGAAAACATTCAAGTT+GGG 0.461991 5.2:-6161743 MS.gene09666:CDS
CTGAGGTGTTTATGTATGTA+GGG 0.463211 5.2:-6160518 MS.gene09666:CDS
GATGAAGGAATGTGGGCTCT+TGG 0.464285 5.2:-6161517 MS.gene09666:CDS
GAACCAATGTCTGGCAACTC+TGG 0.466451 5.2:-6162140 MS.gene09666:CDS
TCTACGGAGGATCACATGCC+GGG 0.468350 5.2:-6160369 MS.gene09666:CDS
CCGCTAACAATGTGAGCAAA+TGG 0.471071 5.2:-6162048 MS.gene09666:CDS
TCTGAGGTGTTTATGTATGT+AGG 0.471453 5.2:-6160519 MS.gene09666:CDS
GTCCGACTCTAAGGGACTTA+CGG 0.471843 5.2:-6160712 MS.gene09666:CDS
TCGAATTCTCGATCCATTTG+TGG 0.474043 5.2:-6160748 MS.gene09666:CDS
CCTGGCAAGAGGGTTGCCAC+TGG 0.476047 5.2:+6161414 None:intergenic
AATGTGGAAAACATTCAAGT+TGG 0.478518 5.2:-6161744 MS.gene09666:CDS
ACTTACGGAGCTTCAGAGAA+TGG 0.483312 5.2:-6160697 MS.gene09666:CDS
TATCTAGGTGACCTTTATTG+AGG 0.485934 5.2:+6160331 None:intergenic
AAACATTCAAGTTGGGAGAT+GGG 0.491686 5.2:-6161736 MS.gene09666:CDS
AGAGTTAGAAGTCTCTAAAG+AGG 0.492373 5.2:-6165497 MS.gene09666:intron
CGAATTCTCGATCCATTTGT+GGG 0.495488 5.2:-6160747 MS.gene09666:CDS
CCAGTGGCAACCCTCTTGCC+AGG 0.497542 5.2:-6161414 MS.gene09666:CDS
AACAAGGACTTGGCAGAACC+TGG 0.499858 5.2:+6161396 None:intergenic
GTGGTACAAGAGTATACAGC+TGG 0.502476 5.2:-6160244 MS.gene09666:CDS
AAAACATTCAAGTTGGGAGA+TGG 0.502988 5.2:-6161737 MS.gene09666:CDS
GACCTTTATTGAGGTTTACT+GGG 0.503932 5.2:+6160340 None:intergenic
TGTTTACATCTTCTCTCTAG+TGG 0.504895 5.2:-6162017 MS.gene09666:CDS
ATCCCAGTAAACCTCAATAA+AGG 0.507470 5.2:-6160342 MS.gene09666:CDS
GTAATAGCAATGGTTTCAGC+TGG 0.515102 5.2:-6160654 MS.gene09666:CDS
CAAGACTGCCGCCACTGCAA+AGG 0.518476 5.2:-6160597 MS.gene09666:CDS
CTCATTGCCTTGGGGAATGG+AGG 0.519787 5.2:-6161691 MS.gene09666:CDS
TGCATGACATCCATTTCCCT+CGG 0.522165 5.2:-6160435 MS.gene09666:CDS
GAGGTACGATGACAAGGATA+AGG 0.524291 5.2:+6161807 None:intergenic
TCGATGTCAAGGCGGCTAAG+AGG 0.525443 5.2:+6160298 None:intergenic
CTGGCAAGAGGGTTGCCACT+GGG 0.527982 5.2:+6161415 None:intergenic
CTCTACGGAGGATCACATGC+CGG 0.528318 5.2:-6160370 MS.gene09666:CDS
ATGCCAGAGTTGCCAGACAT+TGG 0.529945 5.2:+6162137 None:intergenic
GGCTTGAAATGTCGGTACTT+TGG 0.530731 5.2:+6161436 None:intergenic
TACTCGAGCCTTTGCAGTGG+CGG 0.530816 5.2:+6160589 None:intergenic
GTTGCCCAAAGTTCAAAGCT+AGG 0.531984 5.2:+6161572 None:intergenic
TGCCACTGGGCTTGAAATGT+CGG 0.534487 5.2:+6161428 None:intergenic
AACATTCAAGTTGGGAGATG+GGG 0.535122 5.2:-6161735 MS.gene09666:CDS
CTTACGGAGCTTCAGAGAAT+GGG 0.535433 5.2:-6160696 MS.gene09666:CDS
TTCAATGCTCAAACACCAGA+TGG 0.538636 5.2:-6160483 MS.gene09666:CDS
AAATCTGGAAGATGGTCAGC+TGG 0.539495 5.2:-6165144 MS.gene09666:CDS
AAGGCGCCTGTTCCAACCCA+TGG 0.544927 5.2:-6160995 MS.gene09666:CDS
CTTAGCCGCCTTGACATCGA+TGG 0.545584 5.2:-6160295 MS.gene09666:CDS
TTGATCAGTGAACCAATGTC+TGG 0.547412 5.2:-6162149 MS.gene09666:intron
GTTTACATCTTCTCTCTAGT+GGG 0.548661 5.2:-6162016 MS.gene09666:CDS
TGTTATAGCTGTAATAGCAA+TGG 0.550110 5.2:-6160664 MS.gene09666:CDS
AAGTCCTTGTTGCTGCATCA+AGG 0.550980 5.2:-6161384 MS.gene09666:CDS
CAAGAAGAGGTACGATGACA+AGG 0.553042 5.2:+6161801 None:intergenic
TCAAAGCAAGACATGCTAGC+TGG 0.554527 5.2:+6160807 None:intergenic
AATTAGACTTTGAAGCTACC+TGG 0.558655 5.2:+6160195 None:intergenic
CGCAAAGAGAATGATGAGCC+AGG 0.562335 5.2:-6160213 MS.gene09666:CDS
TAGGTAGAAGTAGCTAAAGA+AGG 0.563359 5.2:+6161591 None:intergenic
TAAGAGCCAAATCTGGAAGA+TGG 0.566680 5.2:-6165152 MS.gene09666:CDS
TTCCCCAATAAGAGTCACTT+AGG 0.572082 5.2:+6161987 None:intergenic
AGGACAGAGACGCCATGGGT+TGG 0.573128 5.2:+6160983 None:intergenic
ATCCTCGAAATAGACGAGAA+TGG 0.573136 5.2:+6161537 None:intergenic
CTTTCCTTGATGCAGCAACA+AGG 0.573520 5.2:+6161380 None:intergenic
CTTTAGGTTTAATCAAGAAG+AGG 0.576154 5.2:+6161788 None:intergenic
AACAATGTGAGCAAATGGAC+TGG 0.581553 5.2:-6162043 MS.gene09666:CDS
GAGCTTCAGAGAATGGGAGT+TGG 0.583029 5.2:-6160690 MS.gene09666:CDS
TTCCTAAGTGACTCTTATTG+GGG 0.583654 5.2:-6161989 MS.gene09666:CDS
AATTAAGTCCATCGATGTCA+AGG 0.584514 5.2:+6160287 None:intergenic
CGAATGTGGCAATATTCGGT+TGG 0.585478 5.2:+6161665 None:intergenic
CGATCTATCTCATTGCCTTG+GGG 0.585703 5.2:-6161699 MS.gene09666:CDS
AGCTACTTACATAGTTGCCG+AGG 0.588531 5.2:+6160418 None:intergenic
CTCCGTAAGTCCCTTAGAGT+CGG 0.591568 5.2:+6160710 None:intergenic
CTTGTATAACATGGATACAA+AGG 0.592055 5.2:-6161326 MS.gene09666:CDS
GACGAGGAGCACTCGAAGGA+GGG 0.592862 5.2:-6161628 MS.gene09666:CDS
ATTTCGAGGATGAAGGAATG+TGG 0.593541 5.2:-6161525 MS.gene09666:CDS
AGAGATCAAGATAACCAGAA+AGG 0.593846 5.2:-6161014 MS.gene09666:CDS
CTCCTATAAGTGCATACTGA+GGG 0.598714 5.2:+6160544 None:intergenic
AGGTTTACTGGGATCCACCC+CGG 0.598989 5.2:+6160351 None:intergenic
TGACGAGGAGCACTCGAAGG+AGG 0.599052 5.2:-6161629 MS.gene09666:CDS
CTTACAGGACAGAGACGCCA+TGG 0.599282 5.2:+6160978 None:intergenic
CTTGGCAGAACCTGGCAAGA+GGG 0.603089 5.2:+6161404 None:intergenic
ACCTAGTGGTATTCCTGACA+AGG 0.604915 5.2:-6162096 MS.gene09666:CDS
TGGAGATGACTTGTATAACA+TGG 0.607014 5.2:-6161335 MS.gene09666:CDS
ACTTGGCAGAACCTGGCAAG+AGG 0.608237 5.2:+6161403 None:intergenic
TGGTGCAGAGCCAAATTGGA+AGG 0.610894 5.2:+6160922 None:intergenic
AAACTGATCAGCCCCGAATG+TGG 0.611538 5.2:+6161651 None:intergenic
TGTAGTTATGAAGATCTCTA+CGG 0.612602 5.2:-6160385 MS.gene09666:CDS
TACTCTGAAATTGTAAACAG+TGG 0.613535 5.2:+6160833 None:intergenic
ATTTGGCTCTTATTGCAGGA+CGG 0.614770 5.2:+6165163 None:intergenic
CGGGGCTGATCAGTTTGACG+AGG 0.615131 5.2:-6161644 MS.gene09666:CDS
GTATTCCTGACAAGGGTGGT+AGG 0.618180 5.2:-6162088 MS.gene09666:CDS
TTTCGAGGATGAAGGAATGT+GGG 0.619267 5.2:-6161524 MS.gene09666:CDS
CGGAGGATCACATGCCGGGG+TGG 0.619996 5.2:-6160365 MS.gene09666:CDS
GAAGGAGGGTCACAATAAAG+TGG 0.621467 5.2:-6161614 MS.gene09666:CDS
ACTTGAACCCGTCTGTGTGG+AGG 0.629185 5.2:+6161275 None:intergenic
TGCACTTATAGGAGCTTCTG+AGG 0.629617 5.2:-6160535 MS.gene09666:CDS
GCTCTGCACCATAATATACT+CGG 0.638311 5.2:-6160910 MS.gene09666:CDS
CCCTTGTCAGGAATACCACT+AGG 0.642342 5.2:+6162095 None:intergenic
CCTATATTGCATGTGCAAAG+TGG 0.646472 5.2:-6160263 MS.gene09666:CDS
GTTTGACGAGGAGCACTCGA+AGG 0.649207 5.2:-6161632 MS.gene09666:CDS
GCTCCTATAAGTGCATACTG+AGG 0.657896 5.2:+6160543 None:intergenic
TTGGTAACCTCCATTCCCCA+AGG 0.658810 5.2:+6161684 None:intergenic
ACCGAATATTGCCACATTCG+GGG 0.660107 5.2:-6161662 MS.gene09666:CDS
CTTACTTGAACCCGTCTGTG+TGG 0.660599 5.2:+6161272 None:intergenic
CGGGATTGGAGTGAACCTAG+TGG 0.661833 5.2:-6162110 MS.gene09666:CDS
TTACAGGACAGAGACGCCAT+GGG 0.668038 5.2:+6160979 None:intergenic
AAGCAAGACATGCTAGCTGG+TGG 0.671852 5.2:+6160810 None:intergenic
AAGTACTCGAGCCTTTGCAG+TGG 0.678677 5.2:+6160586 None:intergenic
GCTACTTACATAGTTGCCGA+GGG 0.679598 5.2:+6160419 None:intergenic
CTACGGAGGATCACATGCCG+GGG 0.680505 5.2:-6160368 MS.gene09666:CDS
CCTAGTGGTATTCCTGACAA+GGG 0.693962 5.2:-6162095 MS.gene09666:CDS
AGTGGTATTCCTGACAAGGG+TGG 0.695849 5.2:-6162092 MS.gene09666:CDS
TGGTACAAGAGTATACAGCT+GGG 0.699684 5.2:-6160243 MS.gene09666:CDS
GGGAATGAATCAATTCAATG+TGG 0.710897 5.2:-6161760 MS.gene09666:CDS
AGTTATGAAGATCTCTACGG+AGG 0.723212 5.2:-6160382 MS.gene09666:CDS
TACCGACATTTCAAGCCCAG+TGG 0.725447 5.2:-6161430 MS.gene09666:CDS
TAAGTCCATCGATGTCAAGG+CGG 0.726934 5.2:+6160290 None:intergenic
CTGCACCATAATATACTCGG+TGG 0.739304 5.2:-6160907 MS.gene09666:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAAATAAAATTAATA+TGG + chr5.2:6160640-6160659 None:intergenic 0.0%
!! AAAGTAATATATAAAATTCA+TGG - chr5.2:6162888-6162907 MS.gene09666:intron 10.0%
!!! AAATTACAACTATTTTTTTA+AGG - chr5.2:6161743-6161762 MS.gene09666:CDS 10.0%
!!! AAATTTTAATAAAAAGAAAG+GGG - chr5.2:6161911-6161930 MS.gene09666:intron 10.0%
!!! GAAAATTTTAATAAAAAGAA+AGG - chr5.2:6161909-6161928 MS.gene09666:intron 10.0%
!! ATAATGTTAAAGAATTATTG+TGG - chr5.2:6161477-6161496 MS.gene09666:CDS 15.0%
!! CAAAATTAGCTAAATAATAT+TGG + chr5.2:6164538-6164557 None:intergenic 15.0%
!! TAATGTTAAAGAATTATTGT+GGG - chr5.2:6161478-6161497 MS.gene09666:CDS 15.0%
!! TAGTTGAAAAAAAACAAAAA+AGG - chr5.2:6161120-6161139 MS.gene09666:intron 15.0%
!! TTTAGATGTATATATTTATG+AGG - chr5.2:6161850-6161869 MS.gene09666:intron 15.0%
!!! ATAAATTTTCTCTTATATAC+TGG - chr5.2:6162813-6162832 MS.gene09666:intron 15.0%
!!! CAATATTATTTAGCTAATTT+TGG - chr5.2:6164536-6164555 MS.gene09666:intron 15.0%
!!! TATGTCAAAAACAATTTTAA+GGG + chr5.2:6160309-6160328 None:intergenic 15.0%
!!! TTATCAGTTTTATGTATAAA+AGG - chr5.2:6161267-6161286 MS.gene09666:intron 15.0%
!! AATATATTGTTAGGTTACTT+AGG + chr5.2:6163077-6163096 None:intergenic 20.0%
!! ATGAGTCAATTTATTGTATT+TGG + chr5.2:6162200-6162219 None:intergenic 20.0%
!! TATAAACACCATCTTATTAA+TGG + chr5.2:6163026-6163045 None:intergenic 20.0%
!! TATTATGTTATCTATATGCA+TGG + chr5.2:6163221-6163240 None:intergenic 20.0%
!! TCACTATAATATTAAGAACA+TGG - chr5.2:6163498-6163517 MS.gene09666:intron 20.0%
!! TTAAATTAACCCACTTAAAT+TGG + chr5.2:6162728-6162747 None:intergenic 20.0%
!!! ACTCATTCTAGTAATTTTAT+AGG + chr5.2:6162229-6162248 None:intergenic 20.0%
!!! ACTTTTTTATGGTGTAAAAA+AGG - chr5.2:6161887-6161906 MS.gene09666:intron 20.0%
!!! ATGATCGATTTACTTTTTTA+TGG - chr5.2:6161876-6161895 MS.gene09666:intron 20.0%
!!! ATTTTAGATAGCTTATCATA+AGG - chr5.2:6161186-6161205 MS.gene09666:intron 20.0%
!!! GTATGTCAAAAACAATTTTA+AGG + chr5.2:6160310-6160329 None:intergenic 20.0%
!!! TCAATTAAAGTTGATGTATT+TGG - chr5.2:6162161-6162180 MS.gene09666:intron 20.0%
!!! TGTTTATAGTGCTTTTATAA+AGG - chr5.2:6163038-6163057 MS.gene09666:intron 20.0%
!!! TTACAACTTCATTTTTTTGA+AGG - chr5.2:6161773-6161792 MS.gene09666:CDS 20.0%
!!! TTGTTTTTTTTCAACTAACA+AGG + chr5.2:6161117-6161136 None:intergenic 20.0%
!!! TTTAACTACTTTTTTCCAAA+AGG + chr5.2:6162930-6162949 None:intergenic 20.0%
! AGAGGAATAATGTACATATT+TGG + chr5.2:6160263-6160282 None:intergenic 25.0%
! CATAAGGAATAGTAAATGAA+AGG - chr5.2:6161202-6161221 MS.gene09666:intron 25.0%
! TCACATCTATAATCTTCTTT+AGG - chr5.2:6162429-6162448 MS.gene09666:intron 25.0%
! TGACTAATCAATAAATCTTC+TGG - chr5.2:6163847-6163866 MS.gene09666:intron 25.0%
! TGTATACAATTAAACTCAAG+AGG + chr5.2:6161674-6161693 None:intergenic 25.0%
! TTATTCTGAGTATGGAAAAT+TGG - chr5.2:6162400-6162419 MS.gene09666:intron 25.0%
!! AAAAGGAAAAACGAAAGTTT+TGG - chr5.2:6161284-6161303 MS.gene09666:CDS 25.0%
!! ATGAAAATCAACAATCCTTT+TGG - chr5.2:6162912-6162931 MS.gene09666:intron 25.0%
!! GACTGAAATAATTTTGTACA+AGG + chr5.2:6163308-6163327 None:intergenic 25.0%
!! TGTTTTCGTAAGAAAAAGTA+TGG + chr5.2:6160897-6160916 None:intergenic 25.0%
!! TTTGAATTTTGTATGCCAAA+TGG + chr5.2:6161318-6161337 None:intergenic 25.0%
!!! ACACACATAAGAAAGTATTA+TGG + chr5.2:6164484-6164503 None:intergenic 25.0%
!!! ATTTTTTTTCCTCAAATTCC+CGG + chr5.2:6160997-6161016 None:intergenic 25.0%
!!! CATGGTTTTAAGAATTAAAG+AGG + chr5.2:6160281-6160300 None:intergenic 25.0%
!!! GCTAAAAATAAAAGAGTGTT+TGG + chr5.2:6163811-6163830 None:intergenic 25.0%
!!! TACCTAAACAATTCGTTTTT+TGG - chr5.2:6161635-6161654 MS.gene09666:CDS 25.0%
!!! TCAAATCATTTTAGTTCAGT+AGG + chr5.2:6164611-6164630 None:intergenic 25.0%
!!! TTTTCTGTCTTATGTTGTTT+TGG + chr5.2:6163370-6163389 None:intergenic 25.0%
!!! TTTTTAAGTTTTCCCACAAA+TGG + chr5.2:6164973-6164992 None:intergenic 25.0%
AAACAATATCAGTGCGATAA+AGG + chr5.2:6164237-6164256 None:intergenic 30.0%
AAAGTTGAAATGCCATCAAA+TGG - chr5.2:6164350-6164369 MS.gene09666:intron 30.0%
AATGTGGAAAACATTCAAGT+TGG - chr5.2:6163961-6163980 MS.gene09666:intron 30.0%
ACCTTCATCACAACAAAAAA+TGG + chr5.2:6164642-6164661 None:intergenic 30.0%
ACTAACTACCTAGTTATTGA+GGG - chr5.2:6162350-6162369 MS.gene09666:intron 30.0%
ATAATGTCCTTCCCTTAAAA+GGG + chr5.2:6161568-6161587 None:intergenic 30.0%
ATACTGGTACTCAAAAAGAA+TGG - chr5.2:6162829-6162848 MS.gene09666:intron 30.0%
ATGTAACCAAATGATCATGT+GGG - chr5.2:6162138-6162157 MS.gene09666:CDS 30.0%
CAAGTTTAAGCATGTGAATT+CGG + chr5.2:6161419-6161438 None:intergenic 30.0%
CACCAAAAAACGAATTGTTT+AGG + chr5.2:6161640-6161659 None:intergenic 30.0%
CATCTTATTAATGGTTTCAG+AGG + chr5.2:6163017-6163036 None:intergenic 30.0%
CTCTTCTTGATTAAACCTAA+AGG - chr5.2:6163918-6163937 MS.gene09666:intron 30.0%
CTTGTATAACATGGATACAA+AGG - chr5.2:6164379-6164398 MS.gene09666:intron 30.0%
GAGTAATAATTAGCCCAAAA+TGG - chr5.2:6162245-6162264 MS.gene09666:intron 30.0%
GTGAATATTCATAGTCATAG+AGG - chr5.2:6161943-6161962 MS.gene09666:intron 30.0%
GTTGATTAATATGCATGCTA+TGG - chr5.2:6162376-6162395 MS.gene09666:intron 30.0%
TACGTATAGTTTATGATAGC+TGG - chr5.2:6161052-6161071 MS.gene09666:intron 30.0%
TACTAACTACCTAGTTATTG+AGG - chr5.2:6162349-6162368 MS.gene09666:intron 30.0%
TCACGTAATATACATTTGCA+TGG + chr5.2:6162514-6162533 None:intergenic 30.0%
TCTTAAAGCTTATTGAATCC+CGG - chr5.2:6160975-6160994 MS.gene09666:CDS 30.0%
TGATTAAACCTAAAGGTTGT+GGG - chr5.2:6163925-6163944 MS.gene09666:intron 30.0%
TGCTTCACACTTACTTATTT+GGG - chr5.2:6161440-6161459 MS.gene09666:CDS 30.0%
TGTAGTTATGAAGATCTCTA+CGG - chr5.2:6165320-6165339 MS.gene09666:intron 30.0%
TGTTATAGCTGTAATAGCAA+TGG - chr5.2:6165041-6165060 MS.gene09666:intron 30.0%
TTGATTAAACCTAAAGGTTG+TGG - chr5.2:6163924-6163943 MS.gene09666:intron 30.0%
TTGCTTCACACTTACTTATT+TGG - chr5.2:6161439-6161458 MS.gene09666:CDS 30.0%
TTGTTTCGTGTAAGTTAGTT+TGG - chr5.2:6162452-6162471 MS.gene09666:intron 30.0%
TTTCCTAAGTGACTCTTATT+GGG - chr5.2:6163715-6163734 MS.gene09666:intron 30.0%
! ACCAATTTACTCTTCCATTT+TGG + chr5.2:6162262-6162281 None:intergenic 30.0%
! ATGATCTAAAGTTTGACTGA+AGG - chr5.2:6161586-6161605 MS.gene09666:CDS 30.0%
! ATGTGGAAAACATTCAAGTT+GGG - chr5.2:6163962-6163981 MS.gene09666:intron 30.0%
! ATTGTAAACAGTGGTTTTCA+TGG + chr5.2:6164866-6164885 None:intergenic 30.0%
! CCAATTTACTCTTCCATTTT+GGG + chr5.2:6162261-6162280 None:intergenic 30.0%
! CTTGAAGACACTTTTGTATA+TGG + chr5.2:6162856-6162875 None:intergenic 30.0%
! CTTTAGGTTTAATCAAGAAG+AGG + chr5.2:6163920-6163939 None:intergenic 30.0%
! GATAAGATTTTGCACTACTT+GGG - chr5.2:6162087-6162106 MS.gene09666:CDS 30.0%
! TGATAAGATTTTGCACTACT+TGG - chr5.2:6162086-6162105 MS.gene09666:CDS 30.0%
! TTGCATGGAAGTATATTACT+TGG + chr5.2:6162499-6162518 None:intergenic 30.0%
!! CTCTGAAACCATTAATAAGA+TGG - chr5.2:6163015-6163034 MS.gene09666:intron 30.0%
!! TACTCTGAAATTGTAAACAG+TGG + chr5.2:6164875-6164894 None:intergenic 30.0%
!! TGGCTTTGATATATATGACA+GGG - chr5.2:6163867-6163886 MS.gene09666:intron 30.0%
!!! GGTATACTTTTTTTGACAAG+AGG - chr5.2:6162312-6162331 MS.gene09666:intron 30.0%
!!! TACTTTTTTTGACAAGAGGT+TGG - chr5.2:6162316-6162335 MS.gene09666:intron 30.0%
!!! TCATTTTAACTGCACTTACT+CGG - chr5.2:6160803-6160822 MS.gene09666:CDS 30.0%
!!! TCCATTTTTTGTTGTGATGA+AGG - chr5.2:6164638-6164657 MS.gene09666:intron 30.0%
!!! TTTTTAGTTACCATAGTTCC+CGG + chr5.2:6162000-6162019 None:intergenic 30.0%
!!! TTTTTTTTCCTCAAATTCCC+GGG + chr5.2:6160996-6161015 None:intergenic 30.0%
AATTAAGTCCATCGATGTCA+AGG + chr5.2:6165421-6165440 None:intergenic 35.0%
AATTGACCCACATGATCATT+TGG + chr5.2:6162147-6162166 None:intergenic 35.0%
ACTTAAAAAGTCCGACTCTA+AGG - chr5.2:6164984-6165003 MS.gene09666:intron 35.0%
ACTTCTTCAACTTGACTTAC+AGG + chr5.2:6164745-6164764 None:intergenic 35.0%
AGAGATCAAGATAACCAGAA+AGG - chr5.2:6164691-6164710 MS.gene09666:intron 35.0%
AGAGGAAGTAAAACCTATCT+AGG + chr5.2:6165392-6165411 None:intergenic 35.0%
AGTATTATGGTTTCAGCTGA+AGG + chr5.2:6164471-6164490 None:intergenic 35.0%
AGTTTATGATAGCTGGAGAA+AGG - chr5.2:6161059-6161078 MS.gene09666:intron 35.0%
ATAGACAACCCTTTACAGAA+TGG - chr5.2:6163151-6163170 MS.gene09666:intron 35.0%
ATCCCAGTAAACCTCAATAA+AGG - chr5.2:6165363-6165382 MS.gene09666:intron 35.0%
ATCTTGTGTGTGCATATGTA+TGG - chr5.2:6163118-6163137 MS.gene09666:intron 35.0%
CAAAATGCAGAAAAGAAGCA+TGG - chr5.2:6162025-6162044 MS.gene09666:CDS 35.0%
CAACTATGTAAGTAGCTTAC+TGG - chr5.2:6165293-6165312 MS.gene09666:intron 35.0%
CATAATGTCCTTCCCTTAAA+AGG + chr5.2:6161569-6161588 None:intergenic 35.0%
CATCACAACCATTCTGTAAA+GGG + chr5.2:6163162-6163181 None:intergenic 35.0%
CATGTAACCAAATGATCATG+TGG - chr5.2:6162137-6162156 MS.gene09666:CDS 35.0%
CCCAAAATGGAAGAGTAAAT+TGG - chr5.2:6162258-6162277 MS.gene09666:intron 35.0%
CTTAAAAAGTCCGACTCTAA+GGG - chr5.2:6164985-6165004 MS.gene09666:intron 35.0%
CTTAAAGCTTATTGAATCCC+GGG - chr5.2:6160976-6160995 MS.gene09666:CDS 35.0%
CTTTCCTAAGTGACTCTTAT+TGG - chr5.2:6163714-6163733 MS.gene09666:intron 35.0%
GAAAACCACCGAGTATATTA+TGG + chr5.2:6164806-6164825 None:intergenic 35.0%
GACCTTTATTGAGGTTTACT+GGG + chr5.2:6165368-6165387 None:intergenic 35.0%
GCTATGGTTTATTCTGAGTA+TGG - chr5.2:6162392-6162411 MS.gene09666:intron 35.0%
GCTTCACACTTACTTATTTG+GGG - chr5.2:6161441-6161460 MS.gene09666:CDS 35.0%
GGGAATGAATCAATTCAATG+TGG - chr5.2:6163945-6163964 MS.gene09666:intron 35.0%
GTAGTGCAAAATCTTATCAC+TGG + chr5.2:6162085-6162104 None:intergenic 35.0%
GTGATAACACTTCAAAAAGC+AGG + chr5.2:6162993-6163012 None:intergenic 35.0%
GTTTACATCTTCTCTCTAGT+GGG - chr5.2:6163689-6163708 MS.gene09666:intron 35.0%
TAAAACATGTGCTGTCTTTC+AGG - chr5.2:6163745-6163764 MS.gene09666:intron 35.0%
TAACCCACTTAAATTGGCAT+CGG + chr5.2:6162722-6162741 None:intergenic 35.0%
TAATGTCCTTCCCTTAAAAG+GGG + chr5.2:6161567-6161586 None:intergenic 35.0%
TACAAGTCATCTCCATTTGA+TGG + chr5.2:6164365-6164384 None:intergenic 35.0%
TAGGTAGAAGTAGCTAAAGA+AGG + chr5.2:6164117-6164136 None:intergenic 35.0%
TAGGTTACTTAGGTATGCTT+AGG + chr5.2:6163067-6163086 None:intergenic 35.0%
TAGTTCAGTAGGATCTAGAA+TGG + chr5.2:6164600-6164619 None:intergenic 35.0%
TATCTAGGTGACCTTTATTG+AGG + chr5.2:6165377-6165396 None:intergenic 35.0%
TCAACTAACCCTCAATAACT+AGG + chr5.2:6162361-6162380 None:intergenic 35.0%
TCAATAAAGGTCACCTAGAT+AGG - chr5.2:6165376-6165395 MS.gene09666:intron 35.0%
TGACCTTTATTGAGGTTTAC+TGG + chr5.2:6165369-6165388 None:intergenic 35.0%
TGTTTACATCTTCTCTCTAG+TGG - chr5.2:6163688-6163707 MS.gene09666:intron 35.0%
TTCCTAAGTGACTCTTATTG+GGG - chr5.2:6163716-6163735 MS.gene09666:intron 35.0%
TTGCAAGACATTTGATATGC+TGG + chr5.2:6160777-6160796 None:intergenic 35.0%
! ACAAATGGCTTCTCTTTTTG+TGG - chr5.2:6164828-6164847 MS.gene09666:intron 35.0%
! ACTTCAAAAAGCAGGTTTTG+TGG + chr5.2:6162985-6163004 None:intergenic 35.0%
! AGAGTTAGAAGTCTCTAAAG+AGG - chr5.2:6160208-6160227 MS.gene09666:CDS 35.0%
! AGTTCAGTAGGATCTAGAAT+GGG + chr5.2:6164599-6164618 None:intergenic 35.0%
! ATGTTAACCATCCCCTTTTA+AGG - chr5.2:6161553-6161572 MS.gene09666:CDS 35.0%
! CTGAGGTGTTTATGTATGTA+GGG - chr5.2:6165187-6165206 MS.gene09666:CDS 35.0%
! GCACTGATATTGTTTCTTGT+TGG - chr5.2:6164242-6164261 MS.gene09666:intron 35.0%
! TCAGAAGAATTGACTCTAGA+TGG - chr5.2:6160501-6160520 MS.gene09666:CDS 35.0%
! TCTGAGGTGTTTATGTATGT+AGG - chr5.2:6165186-6165205 MS.gene09666:CDS 35.0%
! TGGAGATGACTTGTATAACA+TGG - chr5.2:6164370-6164389 MS.gene09666:intron 35.0%
! TGTTAACCATCCCCTTTTAA+GGG - chr5.2:6161554-6161573 MS.gene09666:CDS 35.0%
! TTTGTTGTGATGAAGGTTCT+TGG - chr5.2:6164645-6164664 MS.gene09666:intron 35.0%
!! AAAACATTCAAGTTGGGAGA+TGG - chr5.2:6163968-6163987 MS.gene09666:intron 35.0%
!! AAACATTCAAGTTGGGAGAT+GGG - chr5.2:6163969-6163988 MS.gene09666:intron 35.0%
!! ATTGGTATTGACCCTACAAA+AGG - chr5.2:6162276-6162295 MS.gene09666:intron 35.0%
!! CTGGACTAGTTGAATGTTAT+AGG - chr5.2:6165070-6165089 MS.gene09666:intron 35.0%
!! CTGGCTTTGATATATATGAC+AGG - chr5.2:6163866-6163885 MS.gene09666:intron 35.0%
!! GATGGAAGTGTTGATTTCAA+TGG - chr5.2:6160519-6160538 MS.gene09666:CDS 35.0%
!! TCTACCTAGCTTTGAACTTT+GGG - chr5.2:6164129-6164148 MS.gene09666:intron 35.0%
!! TTCTACCTAGCTTTGAACTT+TGG - chr5.2:6164128-6164147 MS.gene09666:intron 35.0%
!!! ACAATTTTAAGGGTGCTTCA+TGG + chr5.2:6160299-6160318 None:intergenic 35.0%
!!! GTTTTGGAACGTTTTCCATT+TGG - chr5.2:6161300-6161319 MS.gene09666:CDS 35.0%
AACAATGTGAGCAAATGGAC+TGG - chr5.2:6163662-6163681 MS.gene09666:intron 40.0%
AACCCACTTAAATTGGCATC+GGG + chr5.2:6162721-6162740 None:intergenic 40.0%
AACCGAATATTGCCACATTC+GGG - chr5.2:6164042-6164061 MS.gene09666:intron 40.0%
AATGGTTGTGATGGCTGATT+AGG - chr5.2:6163169-6163188 MS.gene09666:intron 40.0%
ACAAAAGGATCACGATAGCT+AGG - chr5.2:6162291-6162310 MS.gene09666:intron 40.0%
AGAAAAATCCTCCACACAGA+CGG - chr5.2:6164422-6164441 MS.gene09666:intron 40.0%
AGTTATGAAGATCTCTACGG+AGG - chr5.2:6165323-6165342 MS.gene09666:intron 40.0%
ATCCCTCAGTATGCACTTAT+AGG - chr5.2:6165159-6165178 MS.gene09666:CDS 40.0%
ATCCTCGAAATAGACGAGAA+TGG + chr5.2:6164171-6164190 None:intergenic 40.0%
ATGATATAACCCACTTGCGT+TGG - chr5.2:6162633-6162652 MS.gene09666:intron 40.0%
ATTATGGTGCAGAGCCAAAT+TGG + chr5.2:6164790-6164809 None:intergenic 40.0%
ATTGATCCTAAGACCTCAAG+AGG + chr5.2:6162694-6162713 None:intergenic 40.0%
CAACCGAATATTGCCACATT+CGG - chr5.2:6164041-6164060 MS.gene09666:intron 40.0%
CCACTTTGCACATGCAATAT+AGG + chr5.2:6165445-6165464 None:intergenic 40.0%
CCAGATGGCTTAAAGAGTTT+CGG - chr5.2:6165237-6165256 MS.gene09666:CDS 40.0%
CCATCACAACCATTCTGTAA+AGG + chr5.2:6163163-6163182 None:intergenic 40.0%
CCATTTGCTCACATTGTTAG+CGG + chr5.2:6163660-6163679 None:intergenic 40.0%
CCTATATTGCATGTGCAAAG+TGG - chr5.2:6165442-6165461 MS.gene09666:intron 40.0%
CCTTTACAGAATGGTTGTGA+TGG - chr5.2:6163160-6163179 MS.gene09666:intron 40.0%
CGAATTCTCGATCCATTTGT+GGG - chr5.2:6164958-6164977 MS.gene09666:intron 40.0%
CTCAACAAAAGACAAGAGAC+CGG - chr5.2:6161978-6161997 MS.gene09666:CDS 40.0%
CTCCTATAAGTGCATACTGA+GGG + chr5.2:6165164-6165183 None:intergenic 40.0%
GATTCATTCCCACAACCTTT+AGG + chr5.2:6163936-6163955 None:intergenic 40.0%
GCTCTGCACCATAATATACT+CGG - chr5.2:6164795-6164814 MS.gene09666:intron 40.0%
GTAATAGCAATGGTTTCAGC+TGG - chr5.2:6165051-6165070 MS.gene09666:intron 40.0%
GTGGATAAAGTAGAGTTAGC+TGG + chr5.2:6161397-6161416 None:intergenic 40.0%
GTTTAAGCATGTGAATTCGG+TGG + chr5.2:6161416-6161435 None:intergenic 40.0%
TAAGAGCCAAATCTGGAAGA+TGG - chr5.2:6160553-6160572 MS.gene09666:CDS 40.0%
TACTGAGACTCCTTCCAATT+TGG - chr5.2:6164773-6164792 MS.gene09666:intron 40.0%
TATTGAATCCCGGGAATTTG+AGG - chr5.2:6160985-6161004 MS.gene09666:CDS 40.0%
TCAACAAAAGACAAGAGACC+GGG - chr5.2:6161979-6161998 MS.gene09666:CDS 40.0%
TCGAATTCTCGATCCATTTG+TGG - chr5.2:6164957-6164976 MS.gene09666:intron 40.0%
TCGATCTATCTCATTGCCTT+GGG - chr5.2:6164005-6164024 MS.gene09666:intron 40.0%
TTCAATGCTCAAACACCAGA+TGG - chr5.2:6165222-6165241 MS.gene09666:CDS 40.0%
TTCCCCAATAAGAGTCACTT+AGG + chr5.2:6163721-6163740 None:intergenic 40.0%
TTGATCAGTGAACCAATGTC+TGG - chr5.2:6163556-6163575 MS.gene09666:intron 40.0%
TTGTGTGTGCATATGTATGG+TGG - chr5.2:6163121-6163140 MS.gene09666:intron 40.0%
TTGTTGCATGCAAACTTGGA+AGG - chr5.2:6161356-6161375 MS.gene09666:CDS 40.0%
! AAGATTTTGCACTACTTGGG+TGG - chr5.2:6162090-6162109 MS.gene09666:CDS 40.0%
! AGCTATCGTGATCCTTTTGT+AGG + chr5.2:6162291-6162310 None:intergenic 40.0%
! GAAGGTGTAGATAAGCATGA+TGG - chr5.2:6163465-6163484 MS.gene09666:intron 40.0%
! GAGGATTTTTCTGTTCGCAT+CGG + chr5.2:6164414-6164433 None:intergenic 40.0%
! GCTATCGTGATCCTTTTGTA+GGG + chr5.2:6162290-6162309 None:intergenic 40.0%
! TGGTACAAGAGTATACAGCT+GGG - chr5.2:6165462-6165481 MS.gene09666:intron 40.0%
!! AACATTCAAGTTGGGAGATG+GGG - chr5.2:6163970-6163989 MS.gene09666:intron 40.0%
!! AGCTTTGTTGCATGCAAACT+TGG - chr5.2:6161352-6161371 MS.gene09666:CDS 40.0%
!! ATTTGGCTCTTATTGCAGGA+CGG + chr5.2:6160545-6160564 None:intergenic 40.0%
!!! TGTGTGTGAGTTTTGTTACG+AGG + chr5.2:6160692-6160711 None:intergenic 40.0%
AAAGTAGAGTTAGCTGGCAC+TGG + chr5.2:6161391-6161410 None:intergenic 45.0%
AAATCTGGAAGATGGTCAGC+TGG - chr5.2:6160561-6160580 MS.gene09666:CDS 45.0%
AAGTCCTTGTTGCTGCATCA+AGG - chr5.2:6164321-6164340 MS.gene09666:intron 45.0%
ACCCACTTAAATTGGCATCG+GGG + chr5.2:6162720-6162739 None:intergenic 45.0%
ACCGAATATTGCCACATTCG+GGG - chr5.2:6164043-6164062 MS.gene09666:intron 45.0%
ACCTAGTGGTATTCCTGACA+AGG - chr5.2:6163609-6163628 MS.gene09666:intron 45.0%
ACTTACGGAGCTTCAGAGAA+TGG - chr5.2:6165008-6165027 MS.gene09666:intron 45.0%
AGCTACTTACATAGTTGCCG+AGG + chr5.2:6165290-6165309 None:intergenic 45.0%
AGCTGACCATCTTCCAGATT+TGG + chr5.2:6160562-6160581 None:intergenic 45.0%
CACCATTCTCGTCTATTTCG+AGG - chr5.2:6164166-6164185 MS.gene09666:intron 45.0%
CCGAAACTCTTTAAGCCATC+TGG + chr5.2:6165240-6165259 None:intergenic 45.0%
CCGCTAACAATGTGAGCAAA+TGG - chr5.2:6163657-6163676 MS.gene09666:intron 45.0%
CCTAGTGGTATTCCTGACAA+GGG - chr5.2:6163610-6163629 MS.gene09666:intron 45.0%
CCTGCAATAAGAGCCAAATC+TGG - chr5.2:6160546-6160565 MS.gene09666:CDS 45.0%
CGAATGTGGCAATATTCGGT+TGG + chr5.2:6164043-6164062 None:intergenic 45.0%
CGAGTACTTTGAGCATCTTC+TGG - chr5.2:6165133-6165152 MS.gene09666:CDS 45.0%
CGATCTATCTCATTGCCTTG+GGG - chr5.2:6164006-6164025 MS.gene09666:intron 45.0%
CTCGATCTATCTCATTGCCT+TGG - chr5.2:6164004-6164023 MS.gene09666:intron 45.0%
CTCGTCTATTTCGAGGATGA+AGG - chr5.2:6164173-6164192 MS.gene09666:intron 45.0%
CTGCACCATAATATACTCGG+TGG - chr5.2:6164798-6164817 MS.gene09666:intron 45.0%
CTGTTTCATGCTTGCAGTCT+CGG + chr5.2:6164511-6164530 None:intergenic 45.0%
CTTACGGAGCTTCAGAGAAT+GGG - chr5.2:6165009-6165028 MS.gene09666:intron 45.0%
CTTTCCTTGATGCAGCAACA+AGG + chr5.2:6164328-6164347 None:intergenic 45.0%
GAAAAATCCTCCACACAGAC+GGG - chr5.2:6164423-6164442 MS.gene09666:intron 45.0%
GAAGGAGGGTCACAATAAAG+TGG - chr5.2:6164091-6164110 MS.gene09666:intron 45.0%
GAGGTACGATGACAAGGATA+AGG + chr5.2:6163901-6163920 None:intergenic 45.0%
GCACTTGGCATAAAGCATGA+AGG - chr5.2:6163447-6163466 MS.gene09666:intron 45.0%
GCTACTTACATAGTTGCCGA+GGG + chr5.2:6165289-6165308 None:intergenic 45.0%
GCTCCTATAAGTGCATACTG+AGG + chr5.2:6165165-6165184 None:intergenic 45.0%
GGCTTGAAATGTCGGTACTT+TGG + chr5.2:6164272-6164291 None:intergenic 45.0%
GTATACATCTGCTCTGCACT+TGG - chr5.2:6163432-6163451 MS.gene09666:intron 45.0%
GTTGCCCAAAGTTCAAAGCT+AGG + chr5.2:6164136-6164155 None:intergenic 45.0%
TAAGTCCATCGATGTCAAGG+CGG + chr5.2:6165418-6165437 None:intergenic 45.0%
TACATAGTTGCCGAGGGAAA+TGG + chr5.2:6165283-6165302 None:intergenic 45.0%
TATCTCATTGCCTTGGGGAA+TGG - chr5.2:6164011-6164030 MS.gene09666:intron 45.0%
TCAAAGCAAGACATGCTAGC+TGG + chr5.2:6164901-6164920 None:intergenic 45.0%
TCCCCGATGCCAATTTAAGT+GGG - chr5.2:6162716-6162735 MS.gene09666:intron 45.0%
TGCACTTATAGGAGCTTCTG+AGG - chr5.2:6165170-6165189 MS.gene09666:CDS 45.0%
TGCATGACATCCATTTCCCT+CGG - chr5.2:6165270-6165289 MS.gene09666:intron 45.0%
TTGATGCAGCAACAAGGACT+TGG + chr5.2:6164322-6164341 None:intergenic 45.0%
! CAAGAAGAGGTACGATGACA+AGG + chr5.2:6163907-6163926 None:intergenic 45.0%
! CGGTCTCTTGTCTTTTGTTG+AGG + chr5.2:6161980-6161999 None:intergenic 45.0%
! CTCGGTGGTTTTCACACAAA+TGG - chr5.2:6164813-6164832 MS.gene09666:intron 45.0%
! CTGGCAACTCTGGCATTTTT+CGG - chr5.2:6163575-6163594 MS.gene09666:intron 45.0%
! GATTTTTCTGTTCGCATCGG+TGG + chr5.2:6164411-6164430 None:intergenic 45.0%
! GCTTCTCTTTTTGTGGAGCA+AGG - chr5.2:6164835-6164854 MS.gene09666:intron 45.0%
! GTGGTACAAGAGTATACAGC+TGG - chr5.2:6165461-6165480 MS.gene09666:intron 45.0%
! TGATAGCTGGAGAAAGGTGT+TGG - chr5.2:6161065-6161084 MS.gene09666:intron 45.0%
! TGGCAACTCTGGCATTTTTC+GGG - chr5.2:6163576-6163595 MS.gene09666:intron 45.0%
!! AACCATCCCCTTTTAAGGGA+AGG - chr5.2:6161558-6161577 MS.gene09666:CDS 45.0%
!! CCAGATTTGGCTCTTATTGC+AGG + chr5.2:6160549-6160568 None:intergenic 45.0%
!! GAGAAAGGTGTTGGTGTTGA+TGG - chr5.2:6161074-6161093 MS.gene09666:intron 45.0%
!!! ACTCTGGCATTTTTCGGGAT+TGG - chr5.2:6163581-6163600 MS.gene09666:intron 45.0%
!!! AAAATTTTAATAAAAAGAAA+GGG - chr5.2:6161910-6161929 MS.gene09666:intron 5.0%
!!! TTATTTTATAATATATTGTT+AGG + chr5.2:6163086-6163105 None:intergenic 5.0%
AAACTGATCAGCCCCGAATG+TGG + chr5.2:6164057-6164076 None:intergenic 50.0%
AACAAGGACTTGGCAGAACC+TGG + chr5.2:6164312-6164331 None:intergenic 50.0%
AAGCAAGACATGCTAGCTGG+TGG + chr5.2:6164898-6164917 None:intergenic 50.0%
AAGTACTCGAGCCTTTGCAG+TGG + chr5.2:6165122-6165141 None:intergenic 50.0%
AGACAAGAGACCGGGAACTA+TGG - chr5.2:6161987-6162006 MS.gene09666:CDS 50.0%
AGTGGTATTCCTGACAAGGG+TGG - chr5.2:6163613-6163632 MS.gene09666:intron 50.0%
ATGCCAGAGTTGCCAGACAT+TGG + chr5.2:6163571-6163590 None:intergenic 50.0%
CCCTTGTCAGGAATACCACT+AGG + chr5.2:6163613-6163632 None:intergenic 50.0%
CGCAAAGAGAATGATGAGCC+AGG - chr5.2:6165492-6165511 MS.gene09666:intron 50.0%
CTCCCCGATGCCAATTTAAG+TGG - chr5.2:6162715-6162734 MS.gene09666:intron 50.0%
CTCCGTAAGTCCCTTAGAGT+CGG + chr5.2:6164998-6165017 None:intergenic 50.0%
CTTACTTGAACCCGTCTGTG+TGG + chr5.2:6164436-6164455 None:intergenic 50.0%
GAACCAATGTCTGGCAACTC+TGG - chr5.2:6163565-6163584 MS.gene09666:intron 50.0%
GAGCTTCAGAGAATGGGAGT+TGG - chr5.2:6165015-6165034 MS.gene09666:intron 50.0%
GCCCCGAATGTGGCAATATT+CGG + chr5.2:6164047-6164066 None:intergenic 50.0%
GTATTCCTGACAAGGGTGGT+AGG - chr5.2:6163617-6163636 MS.gene09666:intron 50.0%
GTCCTTCCCTTAAAAGGGGA+TGG + chr5.2:6161563-6161582 None:intergenic 50.0%
TACCGACATTTCAAGCCCAG+TGG - chr5.2:6164275-6164294 MS.gene09666:intron 50.0%
TGCCACTGGGCTTGAAATGT+CGG + chr5.2:6164280-6164299 None:intergenic 50.0%
TGGTGCAGAGCCAAATTGGA+AGG + chr5.2:6164786-6164805 None:intergenic 50.0%
TGTGCTCCTCTTGAGGTCTT+AGG - chr5.2:6162685-6162704 MS.gene09666:intron 50.0%
TTACAGGACAGAGACGCCAT+GGG + chr5.2:6164729-6164748 None:intergenic 50.0%
TTTGTCCTACCACCCTTGTC+AGG + chr5.2:6163625-6163644 None:intergenic 50.0%
! GTCCGACTCTAAGGGACTTA+CGG - chr5.2:6164993-6165012 MS.gene09666:intron 50.0%
! TTGGTAACCTCCATTCCCCA+AGG + chr5.2:6164024-6164043 None:intergenic 50.0%
!! GTGGTATTGGTTTGGGACCT+GGG - chr5.2:6162660-6162679 MS.gene09666:intron 50.0%
!! TGGCCTGGTGGTATTGGTTT+GGG - chr5.2:6162653-6162672 MS.gene09666:intron 50.0%
!! TGTTGGTGTTGATGGCGTAG+AGG - chr5.2:6161082-6161101 MS.gene09666:intron 50.0%
!! TTGGCCTGGTGGTATTGGTT+TGG - chr5.2:6162652-6162671 MS.gene09666:intron 50.0%
ACTTGAACCCGTCTGTGTGG+AGG + chr5.2:6164433-6164452 None:intergenic 55.0%
ACTTGGCAGAACCTGGCAAG+AGG + chr5.2:6164305-6164324 None:intergenic 55.0%
AGGTTTACTGGGATCCACCC+CGG + chr5.2:6165357-6165376 None:intergenic 55.0%
CGGGATTGGAGTGAACCTAG+TGG - chr5.2:6163595-6163614 MS.gene09666:intron 55.0%
CTCATTGCCTTGGGGAATGG+AGG - chr5.2:6164014-6164033 MS.gene09666:intron 55.0%
CTCTACGGAGGATCACATGC+CGG - chr5.2:6165335-6165354 MS.gene09666:intron 55.0%
CTTACAGGACAGAGACGCCA+TGG + chr5.2:6164730-6164749 None:intergenic 55.0%
CTTAGCCGCCTTGACATCGA+TGG - chr5.2:6165410-6165429 MS.gene09666:intron 55.0%
CTTGGCAGAACCTGGCAAGA+GGG + chr5.2:6164304-6164323 None:intergenic 55.0%
GGTCCCAAACCAATACCACC+AGG + chr5.2:6162659-6162678 None:intergenic 55.0%
TACTCGAGCCTTTGCAGTGG+CGG + chr5.2:6165119-6165138 None:intergenic 55.0%
TCGATGTCAAGGCGGCTAAG+AGG + chr5.2:6165410-6165429 None:intergenic 55.0%
TCTACGGAGGATCACATGCC+GGG - chr5.2:6165336-6165355 MS.gene09666:intron 55.0%
! ATAACCCACTTGCGTTGGCC+TGG - chr5.2:6162638-6162657 MS.gene09666:intron 55.0%
! TTGCGTTGGCCTGGTGGTAT+TGG - chr5.2:6162647-6162666 MS.gene09666:intron 55.0%
!! GGTGGTATTGGTTTGGGACC+TGG - chr5.2:6162659-6162678 MS.gene09666:intron 55.0%
!! GTTTGACGAGGAGCACTCGA+AGG - chr5.2:6164073-6164092 MS.gene09666:intron 55.0%
ACCACCAGGCCAACGCAAGT+GGG + chr5.2:6162645-6162664 None:intergenic 60.0%
AGGACAGAGACGCCATGGGT+TGG + chr5.2:6164725-6164744 None:intergenic 60.0%
CAAGACTGCCGCCACTGCAA+AGG - chr5.2:6165108-6165127 MS.gene09666:intron 60.0%
CGGGGCTGATCAGTTTGACG+AGG - chr5.2:6164061-6164080 MS.gene09666:intron 60.0%
CTACGGAGGATCACATGCCG+GGG - chr5.2:6165337-6165356 MS.gene09666:intron 60.0%
CTGGCAAGAGGGTTGCCACT+GGG + chr5.2:6164293-6164312 None:intergenic 60.0%
CTTTGCAGTGGCGGCAGTCT+TGG + chr5.2:6165110-6165129 None:intergenic 60.0%
GGTTGGAACAGGCGCCTTTC+TGG + chr5.2:6164708-6164727 None:intergenic 60.0%
TACCACCAGGCCAACGCAAG+TGG + chr5.2:6162646-6162665 None:intergenic 60.0%
! AAGGCGCCTGTTCCAACCCA+TGG - chr5.2:6164710-6164729 MS.gene09666:intron 60.0%
! CTCAAGAGGAGCACACTCCC+AGG + chr5.2:6162680-6162699 None:intergenic 60.0%
! CTGGGAGTGTGCTCCTCTTG+AGG - chr5.2:6162678-6162697 MS.gene09666:intron 60.0%
! CTTGGCTTCTGGCTGTCTGC+AGG - chr5.2:6164206-6164225 MS.gene09666:intron 60.0%
!! GACGAGGAGCACTCGAAGGA+GGG - chr5.2:6164077-6164096 MS.gene09666:intron 60.0%
!! GAGACGCCATGGGTTGGAAC+AGG + chr5.2:6164719-6164738 None:intergenic 60.0%
!! TGACGAGGAGCACTCGAAGG+AGG - chr5.2:6164076-6164095 MS.gene09666:intron 60.0%
CCAGTGGCAACCCTCTTGCC+AGG - chr5.2:6164291-6164310 MS.gene09666:intron 65.0%
CCTGGCAAGAGGGTTGCCAC+TGG + chr5.2:6164294-6164313 None:intergenic 65.0%
! ACCCACTTGCGTTGGCCTGG+TGG - chr5.2:6162641-6162660 MS.gene09666:intron 65.0%
CGGAGGATCACATGCCGGGG+TGG - chr5.2:6165340-6165359 MS.gene09666:intron 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 6160197 6165530 6160197 ID=MS.gene09666
chr5.2 mRNA 6160197 6165530 6160197 ID=MS.gene09666.t1;Parent=MS.gene09666
chr5.2 exon 6165498 6165530 6165498 ID=MS.gene09666.t1.exon1;Parent=MS.gene09666.t1
chr5.2 CDS 6165498 6165530 6165498 ID=cds.MS.gene09666.t1;Parent=MS.gene09666.t1
chr5.2 exon 6165130 6165262 6165130 ID=MS.gene09666.t1.exon2;Parent=MS.gene09666.t1
chr5.2 CDS 6165130 6165262 6165130 ID=cds.MS.gene09666.t1;Parent=MS.gene09666.t1
chr5.2 exon 6161946 6162163 6161946 ID=MS.gene09666.t1.exon3;Parent=MS.gene09666.t1
chr5.2 CDS 6161946 6162163 6161946 ID=cds.MS.gene09666.t1;Parent=MS.gene09666.t1
chr5.2 exon 6161277 6161839 6161277 ID=MS.gene09666.t1.exon4;Parent=MS.gene09666.t1
chr5.2 CDS 6161277 6161839 6161277 ID=cds.MS.gene09666.t1;Parent=MS.gene09666.t1
chr5.2 exon 6160197 6161067 6160197 ID=MS.gene09666.t1.exon5;Parent=MS.gene09666.t1
chr5.2 CDS 6160197 6161067 6160197 ID=cds.MS.gene09666.t1;Parent=MS.gene09666.t1
Gene Sequence

>MS.gene09666

ATGTCTTGCTTAGAGTTAGAAGTCTCTAAAGAGGTTAGTAGAAATAAAATAAAAATTACATTTCCAAATATGTACATTATTCCTCTTTAATTCTTAAAACCATGAAGCACCCTTAAAATTGTTTTTGACATACTTTGTTTGATCACTAAATACATATTTTGAGCATGCATATTAGTCTCATCAACAATGAATGTAAATTATGTAATAAATATATAAACACTAAAAATGTATATTTTATTTTATTTTTTGTTTTCAAAACTCTCTGCAGAACAAGTTCAAAGAAGAAACAGATTCTGAAACAGAATCAGAAGAATTGACTCTAGATGGAAGTGTTGATTTCAATGGCCGTCCTGCAATAAGAGCCAAATCTGGAAGATGGTCAGCTGGAACAATTATACTCTGTAAGCTCTACAAACATAAATTGCAAAAATTTTATTTTACCATATTAATTTTATTTTATTATATACTTTGAATTCTTTTGTTATCACATAACCTCGTAACAAAACTCACACACACTAAACGCAGAGAAGCTGAACGTTGTTGATTAGAATTTGCGCTTCTACATATCAAATGTACTCCAGCATATCAAATGTCTTGCAACTTTTATCATTTTAACTGCACTTACTCGGACTATTTAAAAAAAATAATACTTGTTTTCACATAATGCAAATCATGCATATATATAACAGTACATATTCCATACTTTTTCTTACGAAAACAATTAAAATTTCATCAATAAGAGATATACATTAGTACTATAAGTTGTCAATGATCTTGTTCTTAAAGCTTATTGAATCCCGGGAATTTGAGGAAAAAAAATACACATGCAAATACATATATGTATATGATTGCGTATACGTATAGTTTATGATAGCTGGAGAAAGGTGTTGGTGTTGATGGCGTAGAGGTTTGAAAAACCTTGTTAGTTGAAAAAAAACAAAAAAGGTTAATTATAAATTCATGTGTTGTGTTCATATTGTTTGCATGTAATTTTAGATAGCTTATCATAAGGAATAGTAAATGAAAGGTGAAGTTACTTTTTGTGTTGTGTTGTTGCAACATTTTCAAGCTTATCAGTTTTATGTATAAAAGGAAAAACGAAAGTTTTGGAACGTTTTCCATTTGGCATACAAAATTCAAAGTAACATTTTTGTCAGCTTTGTTGCATGCAAACTTGGAAGGAAGAGTATGCCAGTGCCAGCTAACTCTACTTTATCCACCGAATTCACATGCTTAAACTTGTTGCTTCACACTTACTTATTTGGGGAATATAAGAAAAAATAATGTTAAAGAATTATTGTGGGAGTAAATAAATATTTGAATATATAATAAAATAAGTAAAAAAAAAAAAAAATGATGTTAACCATCCCCTTTTAAGGGAAGGACATTATGATCTAAAGTTTGACTGAAGGTAAATAATATCTAATCAAAATTGTTTTACCTAAACAATTCGTTTTTTGGTGAATCTCATTAACCTCTTGAGTTTAATTGTATACAAATAATTTTTGATATATTGTATATATATGAAAAGCTTTACATTCTTAATAAATTACAACTATTTTTTTAAGGAAACAAATTACAACTTCATTTTTTTGAAGGAAACAAATTACAACTAATTATATATACTTAATTTTATAAGTAGTTGTATGTGACTTTAGATGTATATATTTATGAGGATTATGATCGATTTACTTTTTTATGGTGTAAAAAAGGAAAATTTTAATAAAAAGAAAGGGGAAAGAGTTTGTGAATATTCATAGTCATAGAGGCTTTTCGCTGTCCTCAACAAAAGACAAGAGACCGGGAACTATGGTAACTAAAAAAAAGACAAAATGCAGAAAAGAAGCATGGAATTCATAGAAATACGTTTATGACAGACACGTAACCAGTGATAAGATTTTGCACTACTTGGGTGGATGACATGTGTCATTGACAATAGACATGTAACCAAATGATCATGTGGGTCAATTAAAGTTGATGTATTTGGTTTAAAATGCAGACCAAATACAATAAATTGACTCATTTATCTCCTATAAAATTACTAGAATGAGTAATAATTAGCCCAAAATGGAAGAGTAAATTGGTATTGACCCTACAAAAGGATCACGATAGCTAGGTATACTTTTTTTGACAAGAGGTTGGTATATATATTTACTAACTACCTAGTTATTGAGGGTTAGTTGATTAATATGCATGCTATGGTTTATTCTGAGTATGGAAAATTGGTATAGATCACATCTATAATCTTCTTTAGGTTGTTTCGTGTAAGTTAGTTTGGTGCTGAGAGAAAGAATGTGAACCAAGTAATATACTTCCATGCAAATGTATATTACGTGATTGATATCTAGAAAATGTTTTTGCAAAATAAATATCTATTTTTTGTGTGTGCAAAATAATAAAATAAAATATCTTTTATTTACATAAAATAATATTCAAATGATATAACCCACTTGCGTTGGCCTGGTGGTATTGGTTTGGGACCTGGGAGTGTGCTCCTCTTGAGGTCTTAGGATCAATTCTCCCCGATGCCAATTTAAGTGGGTTAATTTAACTTCTTCAAAAAAAAATCAAATGATATAATGTATGCTTTGAGTTATATAGAATAAATTTTCATTTATAAATTTTCTCTTATATACTGGTACTCAAAAAGAATGGACCATATACAAAAGTGTCTTCAAGCTACATGATATGAAAGTAATATATAAAATTCATGGCATGAAAATCAACAATCCTTTTGGAAAAAAGTAGTTAAAATAATGAATTAAATTTAAAGAATGATTTCTTTCCACAAAACCTGCTTTTTGAAGTGTTATCACGCCTCTGAAACCATTAATAAGATGGTGTTTATAGTGCTTTTATAAAGGAAACCTAAGCATACCTAAGTAACCTAACAATATATTATAAAATAAACTTGTTGCAATATCTTGTGTGTGCATATGTATGGTGGTGACAAAATAGACAACCCTTTACAGAATGGTTGTGATGGCTGATTAGGATCTCGACAAATTTGACTTAGCTAAGCCATGCATATAGATAACATAATATGAATATTATCAATATTGTTTTTTCTTTTCAAATTTAGTAAATTATCTTAAGTGAATTGTGCTGCCTTGTACAAAATTATTTCAGTCTTCAAGAAGAGTCTAATACAGATGCTGAAAAAACAGAATCCAAAACAACATAAGACAGAAAAAAAGAACAAAAACACATAACAAAACAGAACATCAATTCAGCAGTATACATCTGCTCTGCACTTGGCATAAAGCATGAAGGTGTAGATAAGCATGATGGTATATTTAATTCACTATAATATTAAGAACATGGTTGCTAATGCTGTTTATTTTGTTGTTCTGATTGTATTGATCAGTGAACCAATGTCTGGCAACTCTGGCATTTTTCGGGATTGGAGTGAACCTAGTGGTATTCCTGACAAGGGTGGTAGGACAAAATAACGCAGAAGCCGCTAACAATGTGAGCAAATGGACTGGAACTGTTTACATCTTCTCTCTAGTGGGAGCTTTCCTAAGTGACTCTTATTGGGGAAGATATAAAACATGTGCTGTCTTTCAGGTCATTTTTGTAATTGTAAGTAATGACTCTCAGTTTCATCTCCAAACACTCTTTTATTTTTAGCTGCTACATTATTTCATTGACTAATCAATAAATCTTCTGGCTTTGATATATATGACAGGGTCTAATGTCCTTATCCTTGTCATCGTACCTCTTCTTGATTAAACCTAAAGGTTGTGGGAATGAATCAATTCAATGTGGAAAACATTCAAGTTGGGAGATGGGGATGTTCTATCTCTCGATCTATCTCATTGCCTTGGGGAATGGAGGTTACCAACCGAATATTGCCACATTCGGGGCTGATCAGTTTGACGAGGAGCACTCGAAGGAGGGTCACAATAAAGTGGCCTTCTTTAGCTACTTCTACCTAGCTTTGAACTTTGGGCAACTCTTTTCAAACACCATTCTCGTCTATTTCGAGGATGAAGGAATGTGGGCTCTTGGCTTCTGGCTGTCTGCAGGCTGTGCCTTTATCGCACTGATATTGTTTCTTGTTGGCACACCAAAGTACCGACATTTCAAGCCCAGTGGCAACCCTCTTGCCAGGTTCTGCCAAGTCCTTGTTGCTGCATCAAGGAAAGTGAAAGTTGAAATGCCATCAAATGGAGATGACTTGTATAACATGGATACAAAGGAGTCTTCCACCGATGCGAACAGAAAAATCCTCCACACAGACGGGTTCAAGTAAGTGATAGAAGCTACCTTCAGCTGAAACCATAATACTTTCTTATGTGTGTATAGCCGAGACTGCAAGCATGAAACAGTTCTCCAATATTATTTAGCTAATTTTGGTACATTGTGAACAAAATAACTTTTTTCAGCATTATTGCCCATTCTAGATCCTACTGAACTAAAATGATTTGATAAATTTTCCATTTTTTGTTGTGATGAAGGTTCTTGGATAGAGCAGCGATTATATCTTCAAGAGATCAAGATAACCAGAAAGGCGCCTGTTCCAACCCATGGCGTCTCTGTCCTGTAAGTCAAGTTGAAGAAGTGAAGTGCATACTGAGACTCCTTCCAATTTGGCTCTGCACCATAATATACTCGGTGGTTTTCACACAAATGGCTTCTCTTTTTGTGGAGCAAGGCGATGCCATGAAAACCACTGTTTACAATTTCAGAGTACCACCAGCTAGCATGTCTTGCTTTGATATCATCAGCGTAGCTGTCTTCATTTTCTTCTATCGTCGAATTCTCGATCCATTTGTGGGAAAACTTAAAAAGTCCGACTCTAAGGGACTTACGGAGCTTCAGAGAATGGGAGTTGGACTTGTTATAGCTGTAATAGCAATGGTTTCAGCTGGACTAGTTGAATGTTATAGGCTTAAGCATGCAGACCAAGACTGCCGCCACTGCAAAGGCTCGAGTACTTTGAGCATCTTCTGGCAAATCCCTCAGTATGCACTTATAGGAGCTTCTGAGGTGTTTATGTATGTAGGGCAGTTAGAGTTCTTCAATGCTCAAACACCAGATGGCTTAAAGAGTTTCGGAAGTGCACTTTGCATGACATCCATTTCCCTCGGCAACTATGTAAGTAGCTTACTGGTCAGTGTAGTTATGAAGATCTCTACGGAGGATCACATGCCGGGGTGGATCCCAGTAAACCTCAATAAAGGTCACCTAGATAGGTTTTACTTCCTCTTAGCCGCCTTGACATCGATGGACTTAATTGCCTATATTGCATGTGCAAAGTGGTACAAGAGTATACAGCTGGGCGAGAAACGCAAAGAGAATGATGAGCCAGGTAGCTTCAAAGTCTAA

Protein sequence

>MS.gene09666.t1

MSCLELEVSKENKFKEETDSETESEELTLDGSVDFNGRPAIRAKSGRWSAGTIILLNQCLATLAFFGIGVNLVVFLTRVVGQNNAEAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAVFQVIFVIGLMSLSLSSYLFLIKPKGCGNESIQCGKHSSWEMGMFYLSIYLIALGNGGYQPNIATFGADQFDEEHSKEGHNKVAFFSYFYLALNFGQLFSNTILVYFEDEGMWALGFWLSAGCAFIALILFLVGTPKYRHFKPSGNPLARFCQVLVAASRKVKVEMPSNGDDLYNMDTKESSTDANRKILHTDGFKFLDRAAIISSRDQDNQKGACSNPWRLCPVSQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQGDAMKTTVYNFRVPPASMSCFDIISVAVFIFFYRRILDPFVGKLKKSDSKGLTELQRMGVGLVIAVIAMVSAGLVECYRLKHADQDCRHCKGSSTLSIFWQIPQYALIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVSVVMKISTEDHMPGWIPVNLNKGHLDRFYFLLAALTSMDLIAYIACAKWYKSIQLGEKRKENDEPGSFKV