AlfalfaGEDB | MS.gene069358

M. sativa cultivar XinJiangDaYe / MS.gene069358

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0022857 GO:0042886 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0110165
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069358.t1	XP_003621048.1	99.4	342	2	0	1	342	1	342	8.80E-194	686

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069358.t1	Q9LYR6	78.6	341	72	1	1	340	1	341	2.9e-153	542.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069358.t1	G7KXR0	99.4	342	2	0	1	342	1	342	6.3e-194	686.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049758	MS.gene069358	0.827977	1.16E-54	-1.69E-46
MS.gene051663	MS.gene069358	0.813378	2.64E-51	-1.69E-46
MS.gene051789	MS.gene069358	0.807003	6.25E-50	-1.69E-46
MS.gene052178	MS.gene069358	0.802105	6.57E-49	-1.69E-46
MS.gene053836	MS.gene069358	0.816604	5.08E-52	-1.69E-46
MS.gene054184	MS.gene069358	0.801997	6.91E-49	-1.69E-46
MS.gene054185	MS.gene069358	0.803559	3.29E-49	-1.69E-46
MS.gene054942	MS.gene069358	0.802395	5.72E-49	-1.69E-46
MS.gene055133	MS.gene069358	0.802415	5.67E-49	-1.69E-46
MS.gene055207	MS.gene069358	0.807036	6.15E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene00573	MS.gene069358	PPI
MS.gene015450	MS.gene069358	PPI
MS.gene021879	MS.gene069358	PPI
MS.gene023088	MS.gene069358	PPI
MS.gene033172	MS.gene069358	PPI
MS.gene034047	MS.gene069358	PPI
MS.gene034782	MS.gene069358	PPI
MS.gene037668	MS.gene069358	PPI
MS.gene042632	MS.gene069358	PPI
MS.gene043163	MS.gene069358	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069358.t1	MTR_7g006540	99.415	342	2	0	1	342	1	342	0.0	709
MS.gene069358.t1	MTR_7g067010	43.279	305	159	7	38	341	1	292	1.92e-74	240
MS.gene069358.t1	MTR_3g462710	45.196	281	143	4	63	342	24	294	9.79e-74	238
MS.gene069358.t1	MTR_4g015080	42.617	298	159	6	44	341	17	302	2.53e-73	237
MS.gene069358.t1	MTR_3g112470	39.726	292	168	3	51	342	12	295	3.49e-64	213
MS.gene069358.t1	MTR_7g098180	37.500	312	190	4	31	342	1	307	1.03e-63	213
MS.gene069358.t1	MTR_3g112460	38.947	285	167	2	58	342	18	295	7.19e-63	210
MS.gene069358.t1	MTR_7g098150	37.097	310	188	6	34	342	5	308	5.03e-62	206
MS.gene069358.t1	MTR_7g098220	39.262	298	175	5	44	341	13	304	4.15e-61	206
MS.gene069358.t1	MTR_3g112450	38.014	292	175	2	51	342	12	297	7.27e-60	202

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069358.t1	AT5G13400	78.592	341	72	1	1	340	1	341	0.0	561
MS.gene069358.t1	AT3G54140	43.144	299	159	5	44	342	7	294	2.22e-77	248
MS.gene069358.t1	AT3G54140	43.144	299	159	5	44	342	7	294	2.22e-77	248
MS.gene069358.t1	AT1G62200	40.836	311	178	3	32	342	22	326	3.46e-72	234
MS.gene069358.t1	AT1G62200	40.645	310	178	3	32	341	22	325	4.07e-71	233
MS.gene069358.t1	AT5G01180	41.806	299	162	5	44	342	8	294	5.45e-71	231
MS.gene069358.t1	AT5G01180	41.806	299	162	5	44	342	8	294	5.45e-71	231
MS.gene069358.t1	AT5G01180	41.806	299	162	5	44	342	8	294	5.45e-71	231
MS.gene069358.t1	AT1G62200	40.645	310	178	3	32	341	36	339	5.66e-71	233
MS.gene069358.t1	AT2G02040	41.489	282	155	3	62	342	40	312	1.16e-70	231

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Find 67 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAAATGGCAGAAAGAA+TGG	0.471770	7.1:+87707667	MS.gene069358:CDS
AATGCAGTCAATAATTTCTT+AGG	0.237323	7.1:+87707764	MS.gene069358:CDS
AATTGTAGCATTCACAGCAG+TGG	0.669454	7.1:+87709178	MS.gene069358:CDS
ACTGTGAGCCTGCAAAACCA+TGG	0.656363	7.1:+87708713	MS.gene069358:CDS
ACTTGAGCGACTCGTGTAAG+AGG	0.451347	7.1:-87709326	None:intergenic
AGAAGGATGGCTTTAGGGCG+TGG	0.510086	7.1:+87707263	MS.gene069358:CDS
AGACCATGTGTATCTTCTTT+TGG	0.243431	7.1:+87709065	MS.gene069358:CDS
AGGATAGAAGGATGGCTTTA+GGG	0.379409	7.1:+87707258	MS.gene069358:CDS
ATAACAGCATTTGGAGCTGC+AGG	0.530231	7.1:+87708766	MS.gene069358:CDS
ATACATACCAAATATAAAGA+AGG	0.545633	7.1:-87707366	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAAATGGCAGAAAGAA+TGG	+	chr7.1:87707667-87707686	MS.gene069358:CDS	30.0%
ATATCAAGTTCTCAACAATC+TGG	-	chr7.1:87708525-87708544	None:intergenic	30.0%
ATCTTACGATATGTGTATGT+TGG	+	chr7.1:87707410-87707429	MS.gene069358:intron	30.0%
ATGAGTGACCTAAATTTCAT+AGG	+	chr7.1:87708252-87708271	MS.gene069358:intron	30.0%
ATGTTCAAATGAAATTGGGT+TGG	+	chr7.1:87709204-87709223	MS.gene069358:CDS	30.0%
ATTGCTGCCTTCTTTATATT+TGG	+	chr7.1:87707359-87707378	MS.gene069358:CDS	30.0%
CGAAAGAGAAAAGATTCATT+TGG	+	chr7.1:87709365-87709384	MS.gene069358:CDS	30.0%
CTGATCAACTTATTTACTCT+TGG	+	chr7.1:87709015-87709034	MS.gene069358:intron	30.0%
CTTATACCTGTTCAGAAATA+TGG	-	chr7.1:87709047-87709066	None:intergenic	30.0%
GACCAATTATCACTTCTATT+AGG	+	chr7.1:87708688-87708707	MS.gene069358:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	87707158	87709484	87707158	ID=MS.gene069358
chr7.1	mRNA	87707158	87709484	87707158	ID=MS.gene069358.t1;Parent=MS.gene069358
chr7.1	exon	87707158	87707380	87707158	ID=MS.gene069358.t1.exon1;Parent=MS.gene069358.t1
chr7.1	CDS	87707158	87707380	87707158	ID=cds.MS.gene069358.t1;Parent=MS.gene069358.t1
chr7.1	exon	87707666	87707883	87707666	ID=MS.gene069358.t1.exon2;Parent=MS.gene069358.t1
chr7.1	CDS	87707666	87707883	87707666	ID=cds.MS.gene069358.t1;Parent=MS.gene069358.t1
chr7.1	exon	87708625	87708787	87708625	ID=MS.gene069358.t1.exon3;Parent=MS.gene069358.t1
chr7.1	CDS	87708625	87708787	87708625	ID=cds.MS.gene069358.t1;Parent=MS.gene069358.t1
chr7.1	exon	87709060	87709484	87709060	ID=MS.gene069358.t1.exon4;Parent=MS.gene069358.t1
chr7.1	CDS	87709060	87709484	87709060	ID=cds.MS.gene069358.t1;Parent=MS.gene069358.t1

Gene Sequence

>MS.gene069358

ATGGATACTTGTGAGATCAAGTCACCAGAAGCACCTCAACAAGGGACACCATGCACTTCAATGAGCAGAAAGAAACTTGGCATTTTCTTCATTGAGTCTGAGGATAGAAGGATGGCTTTAGGGCGTGGTTATACAAGAGGTTCTACACCTGTTAATATTCATGGAAAATCCATTGAGGATCTTTCTAAAACTGGTGGTTGGATTGCTGCCTTCTTTATATTTGGTATGTATATTCTTCACATGGTTATCAGTATCTTACGATATGTGTATGTTGGAATGTCTTTTATATCATGACATTAGTATATGTCATGTTTTTGAGGTAAAAGATAGGATAAGATCTGAATTCTTGGTTAATATGATGCTTGTGACAAATGAGAATGCATTAAAATATATTAGGCCATGTTTGTTTGCTGAGTTTGGTTATTAACTTATTATGATTATGAAAATGGTGAATACTTTAAAGATAATGTATGATTTTTTTTTGTTGCTTTTATGGTGGTTACTGCAGGAAATGAAATGGCAGAAAGAATGGCTTATTTTGGACTTTCTGTTAACATGGTAGCCTTTATGTTTTATGTGATGCATAGACCTTTTGCAAGTTCATCCAATGCAGTCAATAATTTCTTAGGAATATCACAAGCTTCTTCTGTTCTTGGTGGATTTCTAGCTGATGCATACCTTGGACGTTACTGGACAATAGCTATCTTCACTACAATTTATCTCGCGGTATGGTTCATTACCTTTCGATTTGAGCTGTCAGATCAAGATTGAATGTCTAAAGTTTCGACTTAAGAGTGAATAAATAGATTGGTTTAAAATTGTAAGTACTTGTCAAAGTAACCCCTCATTTTTGTGAATTAGCAAATACATCCACAAAATTGTAAAATATCATTCGAAGTTGTTGATATGTTGACTTCTATAGTTAGACTTAATTTATAACGTGAAATGTTAACTAGAAATGTTTCATTGGATGCTGATTCCACATCAATGTTAACTCTCCAAGGACTAATTTGTCTATGAAATTTAGTTCATCTTATATACAAATTTATCAGTAATTGCAATTATGCGTAGTCTAATTACTGACATATTAGTCAATGAGTGACCTAAATTTCATAGGAAAATTAGTTTATGGTGTGTTGACATTGATGTGTGATCAACGTGGTTGAAGAGGGGCCGAATATTTAGTTAACATGTCACATCATAGTCTCTATTAATAGAGACTATTTTAACTGATACTTTTGAGAGATGTATTTGCCAATTCAAAAAAATTAGAGACTATTTTGATCGCTGCTTACCATTCCGACAACCAATTTGCCTATTCACTCAAAGTCGAAACAAAGAATGTCTAATCTTGATCCGATAATCCAGATTGTTGAGAACTTGATATTTTTGTGGTCAAATAAATTAATTACAAGATTATACAATCATTATAACTTTGTTAATTTCATTCCAAACTTTTATGAACAGGGCTTAACTGGAATAACAATATGTGCAACAATGAGCATTTTTGTGCCAAACCAAGAAAACTGTGACCAATTATCACTTCTATTAGGAAACTGTGAGCCTGCAAAACCATGGCAAATGACATACCTCTACACTGTTCTATACATAACAGCATTTGGAGCTGCAGGTATTTTTTAGATATAGTTGGTGATTAGTAGTACCGACATATCTTATCCATGTTGGTGTCAGACATTGACATGATGCTAACACGTGTGATAACACTTCAATTGATTTATTTTTTCAAGTTATTAATGGTGTAAACGTGTCACTGTTAGTGTTGCGTCCGTTGTCCGTGTCAATTCTTCCTAGTTTGTAATCAACTTTTTCAATCTATCAATTCCAAAGTTAATCTTTCTGATCAACTTATTTACTCTTGGATTCTACCATATTTCTGAACAGGTATAAGACCATGTGTATCTTCTTTTGGAGCAGACCAATTCGACGAAAGAAGCAAAAACTACAAATCACATCTCGACAGATTTTTCAACTTGTTCTATCTTTCTGTGACAATTGGTGCAATTGTAGCATTCACAGCAGTGGTCTATGTTCAAATGAAATTGGGTTGGGGTTCTGCTTTTGGTTCATTGGCAATAGCAATGGGAGTATCTAACATGCTTTTCTTTATTGGTACACCTTTGTATAGACATAGGTTGCCAGGTGGAAGTCCTCTTACACGAGTCGCTCAAGTATTGGTTGCCGCTTATCGAAAGAGAAAAGATTCATTTGGTAATAGTGAAGTTGTTGGGTTGTATGAGGTTCCTGGTAGAAGATCTGCTATAAAGGGTAGTCAGAAAATTGCTCACACTGATGATTTCAGGTTTTAG

Protein sequence

>MS.gene069358.t1

MDTCEIKSPEAPQQGTPCTSMSRKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSIEDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNCEPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVTIGAIVAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAYRKRKDSFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRF