AlfalfaGEDB | MS.gene21160

M. sativa cultivar XinJiangDaYe / MS.gene21160

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0022857 GO:0042886 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0110165
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21160.t1	XP_003611286.1	98.1	591	10	1	1	590	1	591	1.10E-305	1058.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21160.t1	Q05085	58.7	586	234	5	1	582	1	582	6.9e-187	655.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21160.t1	G7JW11	98.1	591	10	1	1	590	1	591	8.1e-306	1058.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052309	MS.gene21160	0.83339	5.48E-56	-1.69E-46
MS.gene052358	MS.gene21160	0.803609	3.21E-49	-1.69E-46
MS.gene058498	MS.gene21160	-0.814013	1.91E-51	-1.69E-46
MS.gene061040	MS.gene21160	0.818034	2.42E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene00573	MS.gene21160	PPI
MS.gene034782	MS.gene21160	PPI
MS.gene037668	MS.gene21160	PPI
MS.gene042632	MS.gene21160	PPI
MS.gene047248	MS.gene21160	PPI
MS.gene21160	MS.gene36328	PPI
MS.gene21160	MS.gene070491	PPI
MS.gene21160	MS.gene010998	PPI
MS.gene21160	MS.gene36330	PPI
MS.gene21160	MS.gene54408	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21160.t1	MTR_5g012290	98.308	591	9	1	1	590	1	591	0.0	1194
MS.gene21160.t1	MTR_5g012270	74.614	583	143	4	1	579	1	582	0.0	904
MS.gene21160.t1	MTR_4g101380	72.391	594	159	5	1	590	1	593	0.0	862
MS.gene21160.t1	MTR_4g114340	57.268	571	219	8	11	572	8	562	0.0	579
MS.gene21160.t1	MTR_5g085850	50.624	561	249	6	15	569	18	556	0.0	523
MS.gene21160.t1	MTR_4g015080	45.781	557	289	9	17	569	24	571	1.19e-169	494
MS.gene21160.t1	MTR_7g067010	45.781	557	289	9	17	569	14	561	7.09e-166	484
MS.gene21160.t1	MTR_3g462710	44.444	558	297	8	17	569	14	563	9.68e-161	471
MS.gene21160.t1	MTR_5g055000	41.741	563	318	8	25	582	16	573	2.96e-152	450
MS.gene21160.t1	MTR_3g112460	40.636	566	315	10	17	578	13	561	1.24e-148	441

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21160.t1	AT1G12110	63.077	585	207	6	3	582	2	582	0.0	740
MS.gene21160.t1	AT2G26690	56.228	562	226	5	11	566	8	555	0.0	598
MS.gene21160.t1	AT2G26690	55.243	534	219	5	39	566	3	522	0.0	555
MS.gene21160.t1	AT2G26690	54.962	524	216	5	49	566	1	510	0.0	541
MS.gene21160.t1	AT3G21670	52.220	563	242	8	14	569	16	558	0.0	534
MS.gene21160.t1	AT5G01180	43.088	557	305	7	17	569	15	563	2.10e-164	481
MS.gene21160.t1	AT5G01180	43.088	557	305	7	17	569	15	563	2.10e-164	481
MS.gene21160.t1	AT5G01180	43.088	557	305	7	17	569	15	563	2.10e-164	481
MS.gene21160.t1	AT3G54140	42.857	567	309	8	7	569	8	563	3.51e-162	475
MS.gene21160.t1	AT3G54140	42.857	567	309	8	7	569	8	563	3.51e-162	475

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Find 159 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTTTCTTAGACAAAG+CGG	0.657671	5.1:-5588700	MS.gene21160:intron
AAATCTAGTGTCTCGGGCTT+TGG	0.351593	5.1:-5590977	MS.gene21160:CDS
AACACAAGGGAAAACTGTCC+CGG	0.539809	5.1:-5591908	MS.gene21160:CDS
AACACCAATGCGTTGTAAAG+GGG	0.591138	5.1:+5588353	None:intergenic
AACTTCTTCCACATCTGTTA+AGG	0.406906	5.1:+5588617	None:intergenic
AAGAAGTTAAAATGGTAATA+AGG	0.380191	5.1:-5588602	MS.gene21160:CDS
AAGACCGTCATTGATGCTGC+TGG	0.476879	5.1:+5588465	None:intergenic
AAGATAACCAAGGTAGAGGT+TGG	0.503461	5.1:-5590832	MS.gene21160:CDS
AAGCATAGGGTCTTTGGCAG+CGG	0.567922	5.1:-5590876	MS.gene21160:CDS
AATAAGGATGTTACCCATAT+GGG	0.493344	5.1:-5588586	MS.gene21160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGTTTCTTAGACAAAG+CGG	-	chr5.1:5591071-5591090	MS.gene21160:CDS	30.0%
AAAGAAAAGAGAGGAGAAAA+TGG	+	chr5.1:5589806-5589825	None:intergenic	30.0%
AAAGTTTCTCTTCCAATGAA+TGG	-	chr5.1:5589372-5589391	MS.gene21160:intron	30.0%
AAATGACAACTGGGTTATTA+AGG	-	chr5.1:5590085-5590104	MS.gene21160:intron	30.0%
AATAAGGATGTTACCCATAT+GGG	-	chr5.1:5591185-5591204	MS.gene21160:intron	30.0%
ACATATTTCTCTAAACATGG+GGG	-	chr5.1:5590438-5590457	MS.gene21160:intron	30.0%
ACTCAAATTGTTCCATTCAT+TGG	+	chr5.1:5589387-5589406	None:intergenic	30.0%
AGAAACCAACTAATAATGTG+TGG	-	chr5.1:5590165-5590184	MS.gene21160:intron	30.0%
AGATGTGGAAGAAGTTAAAA+TGG	-	chr5.1:5591161-5591180	MS.gene21160:intron	30.0%
ATATACTGTATATGTCAAGG+AGG	-	chr5.1:5589897-5589916	MS.gene21160:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	5587846	5591947	5587846	ID=MS.gene21160
chr5.1	mRNA	5587846	5591947	5587846	ID=MS.gene21160.t1;Parent=MS.gene21160
chr5.1	exon	5591655	5591947	5591655	ID=MS.gene21160.t1.exon1;Parent=MS.gene21160.t1
chr5.1	CDS	5591655	5591947	5591655	ID=cds.MS.gene21160.t1;Parent=MS.gene21160.t1
chr5.1	exon	5591436	5591475	5591436	ID=MS.gene21160.t1.exon2;Parent=MS.gene21160.t1
chr5.1	CDS	5591436	5591475	5591436	ID=cds.MS.gene21160.t1;Parent=MS.gene21160.t1
chr5.1	exon	5590584	5591152	5590584	ID=MS.gene21160.t1.exon3;Parent=MS.gene21160.t1
chr5.1	CDS	5590584	5591152	5590584	ID=cds.MS.gene21160.t1;Parent=MS.gene21160.t1
chr5.1	exon	5587846	5588716	5587846	ID=MS.gene21160.t1.exon4;Parent=MS.gene21160.t1
chr5.1	CDS	5587846	5588716	5587846	ID=cds.MS.gene21160.t1;Parent=MS.gene21160.t1

Gene Sequence

>MS.gene21160

ATGAGCACCCTCCCTACAACACAAGGGAAAACTGTCCCGGATGCATCTGATTACAAGGGCCGGCCGGCCGACAGGTCCACAACCGGTGGTTGGTCCGCGGCCGCCATGATATTAGGAGGAGAAGTGATGGAGAGGTTGACAACACTCGGCATCGCCGTTAATTTGGTCACATACTTGACCGGTACTATGCATTTGGGCAATGCTGCCTCTGCCAATGTTGTTACTAATTTCTTAGGAACCTCCTTTATGCTCTGTCTATTGGGTGGATTTCTTGCTGATACTTTTCTAGGAAGGTTCGAAATTTAATATATCTATAAAAAAAATTCCTTTCTTATTATGGAAAACTAAGACAAGACTTAGTTATTTTATTTTTGTTATTCAAATGATCCACATTAATTATGATTGGTTTTAATGCCTCGTGATTTCTGAGACTTAATTTAATATTTTTTGCTTCCCATTCTTTGTTTGACAGATATCTCACCATCGCCATCTTTGCAGCTGTCCAAGCAATTGTAAGATAATCTCAACTATTCATTTTGTTGTTTCCATTGTTTTCTAGTACTATTTTACATTCAAATCAAGATTTTAATATTAGTATACATGTAAAAAAGTTTGCAACAATTCAAATAAATATTCTAATCGAAGTAACTCATTAATTTTTAATGATCTGACGATTATAATTGATTGACAATGTAAATTTTTCTTACGCTAACAATGCCTTTGAATTAAATCCTCAAAAATTTAATCATACCCTTGTTTAGTTCTTTGATATTGACGAATGTATGTTTATATTAGGGTGTAACAATATTGACGATATCAACTATAATTCCAAGCTTACATCCACCAAAATGCAAAGAAGACTCTAAATCTTGCATACAAGCAGACAGTAAGCAACTATTGGTGATGTATTTAGCACTTTACATCACGGCCCTCGGCACCGGTGGTCTAAAATCTAGTGTCTCGGGCTTTGGTTCCGATCAATTTGACGATTCAGATGAGCAAGAAAAGAAGGGTATGATTAAATTTTTCAGCTGGTTCTATTTTTTCGTAAGCATAGGGTCTTTGGCAGCGGTGACTGTTCTTGTGTACATACAAGATAACCAAGGTAGAGGTTGGGGTTACGGTATTTGTGCGGTCGCAATTGTGGTTGCGCTTCTTGTTTTCTTGTCCGGTACCCGCAAGTACCGGATCAAGCAACTTGTTGGTAGTCCTTTGACTCAGATTGCGGTCGTGTTTGTGGCTGCTTGGAGGAAGAGACACATGCAATTGCCCTCTGATTCTTCATTGCTCTATGAAGAGGATGATATCCTATGTGAAACACCTAAGACCAAGAAGCAAAGGATGCCACATAGCAAACAGTTCCGGTAAATTTTCTATTCATTCTTCTTAGTATTATAGTATAATAATTATTATTATACATAACTTTATTCTTTTTTAACTTAATAAGTTCTTTTTTTTTTGACACTATGTTAACTTGCTATGTTTATGTCTTGTTGGTGTTCCTCTTAGTTTAAGTAGCTTAATCTAAAGTTTCTCTTCCAATGAATGGAACAATTTGAGTAATAATTTATATAAAAAAATTCAATTATAGTTTCTTGTTGACTAGACTACAATAATGTTTGCTAAACTAGTATTCATTCATTTATTTATTTATTGGATTGTAGAACAAGCAAAACTTTTTTCAATCCCGATCTTCATGATTGGAAACCATTAGAGAAGATTGTCTATACTAAAAACATTGACATAGTTGATATATTTGTGGTTGTTGACTCAAAATTGAATAGTTTGGATTTCAAATTCGTATATTTTTATTTTATTTGAAAACAAAAGTTGGATTATTTAATCTCAAATCTTACTATCACATATATTCTGAAAGTGTAATGCATCAATTTTTTAACATAATATAATTTCGGAGACAATATATCCACCTTTTCCTTCTCTTACCTTCCCATCCCTTCCATTTTCTCCTCTCTTTTCTTTACTCCCCAATTCCCAAACAAATTATAAAGGTTTAGATTCAAAGTTGAGTCAACACAAAGTGATAGAGTGGAATATACTGTATATGTCAAGGAGGGGCCCTATTCGATGTTGATCCTGCCAAGATGCATGGGAGTTTCATTTTCAATTTACCAATTGAGAGCCGTATGCAACTAACAATAAAGACATTTATCATTATTGGGCCCCACTTGATGTAGAAAGAACAAATTATTGGGTGCCACATATTTAATAGTGGGCCATGAAATGACAACTGGGTTATTAAGGATCATTTGCTCCTTAATCATGGTGACAACTCCACGCACGAGCTTAATAGTTAAGAGTAGAAACCAACTAATAATGTGTGGTTTATTCTCTCAAAAAATAATGTGTGGTTTATATAATAGTATAGTATTGGCAAAACTGCACTTTTCGCCCTCTAAGTTTTAAAATGTTACGATTTTGGTTCCTTATTAAAAAAAATTGCAATTTTGGCCCCTTTCGTCCCAAAATTGTTGAGAAGACGCCACGTGTCCCAAAAAAGGGACCATAATCGCAACTTTTTGTAAAGATGTGAGGCCAAAAAGCATATTTCCCTTATGTTAGAGGGTCAAAAGAACATATTTCTCTAAACATGGGGGGTTACTTTTGCAATTTTTTTTAATAGGGGGCCAAAATTGCAACATTTTGAAACTTAGGGACAAAAAGTGCAGTTTAGCCTATAGTATTTTTTGCGTATCGCTTTGGATATTTTCTCTGCCTTTTGAGATTTGCAAGATATCCATCTAGTCTATCTCCTTTCGAAATTATTGCTTTTACATATTCACAAGCTTGTCAACGTCTAAAGTTTCAAAAATCTAACTAAGGATGAGAAAATTAACACCTTTCTTTGTTTTTAGTTAATGTCAAAAAAGAAGTATGCCTTGGACCTCTCATCAATCAAAATTACCTTAAAGTATATTAAGGAGATTGATTGAAAGGGTCAATAAACTTCGGTTACAGTTGAAATTAATTCGAAGCACTTAAGTTCATGTCTAATTGAAATAATTTTTAATTAGACTTTACTTATTTTACCACTGAATTACAAATTAATAAAGCTCATAGTCTATTTTTTTAAAAACACGAGACTTGAGACAAAAAAAAACATAATTAATATGCATATTGCTCCTCTTTGGTGTTGCTTAATATGTATATTTCTCCTCTTTGTTATTACCTTGAAGATTAATGAATTAATTGATTTACATTTTGATCAAACAGTTTCTTAGACAAAGCGGCAATCAAAGGCATAGAAAGTGGCAGTGCAATCACAATCAAGGAGAAATGGTATATCTCTACCTTAACAGATGTGGAAGAAGTTAAAATGGTAATAAGGATGTTACCCATATGGGCCACAACCATAATGTTTTGGACAATCCATGCTCAAATGACAACATTCTCAGTATCACAAGCAACAACCATGGATTGTCACATTGGAACATTTCAAATCCCAGCAGCATCAATGACGGTCTTCTTAATCGGAACTATTCTCCTAACTGTTCCTTTCTACGACCGCTTCATTCGACCAGTCACAAAAAAATTACTAAACTCACACGGATTCACCCCTTTACAACGCATTGGTGTTGGTTTAGTCCTCTCAGTAGTGTCCATGGTTGCGGCAGCACTCATAGAAATGAAGCGGTTGAAATTCGCACGATCACATGGTTTTGTAAACGATCCAACGGCAAAGATGCCATTGAGTGTGTTTTGGTTGGTGCCACAATTTTTCTTTGTTGGGTCTGGAGAGGCCTTTATGTATATGGGACAATTAGACTTTTTTCTAAGAGAATGTCCTAAAGGAATGAAAACTATGAGTACAGGGTTGTTCTTGAGCACACTCTCAATAGGGTTTTTCTTTAGCTCATTATTAGTGACTCTAGTGAACAATGTGACGGGTCCAAATAAACCATGGATTGCGGATAATCTTGATCAAGGGAGGCTCTATGATTTTTATTGGCTATTGGCTATGCTAAGTGCTATAAATGTGGTGATATATTTGGCTTGTGCTAAGTGGTATGTGTACAAGGACAAGAGACTTGCTGAGGCGGGCATAGAATTGGAAGAAATAGATGCCTCTACATTCCATGCATAG

Protein sequence

>MS.gene21160.t1

MSTLPTTQGKTVPDASDYKGRPADRSTTGGWSAAAMILGGEVMERLTTLGIAVNLVTYLTGTMHLGNAASANVVTNFLGTSFMLCLLGGFLADTFLGRYLTIAIFAAVQAIGVTILTISTIIPSLHPPKCKEDSKSCIQADSKQLLVMYLALYITALGTGGLKSSVSGFGSDQFDDSDEQEKKGMIKFFSWFYFFVSIGSLAAVTVLVYIQDNQGRGWGYGICAVAIVVALLVFLSGTRKYRIKQLVGSPLTQIAVVFVAAWRKRHMQLPSDSSLLYEEDDILCETPKTKKQRMPHSKQFRFLDKAAIKGIESGSAITIKEKWYISTLTDVEEVKMVIRMLPIWATTIMFWTIHAQMTTFSVSQATTMDCHIGTFQIPAASMTVFLIGTILLTVPFYDRFIRPVTKKLLNSHGFTPLQRIGVGLVLSVVSMVAAALIEMKRLKFARSHGFVNDPTAKMPLSVFWLVPQFFFVGSGEAFMYMGQLDFFLRECPKGMKTMSTGLFLSTLSIGFFFSSLLVTLVNNVTGPNKPWIADNLDQGRLYDFYWLLAMLSAINVVIYLACAKWYVYKDKRLAEAGIELEEIDASTFHA