AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36331


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36331.t1 MTR_2g101560 95.918 637 25 1 1 636 1 637 0.0 1201
MS.gene36331.t1 MTR_2g101610 84.748 636 97 0 1 636 1 636 0.0 1103
MS.gene36331.t1 MTR_2g101590 83.333 636 105 1 1 636 1 635 0.0 1081
MS.gene36331.t1 MTR_2g101640 79.310 638 119 5 1 636 1 627 0.0 1047
MS.gene36331.t1 MTR_4g011280 66.611 599 187 6 1 592 1 593 0.0 816
MS.gene36331.t1 MTR_1g057460 68.696 575 155 5 1 575 24 573 0.0 810
MS.gene36331.t1 MTR_1g057460 69.290 521 141 3 55 575 1 502 0.0 749
MS.gene36331.t1 MTR_0236s0050 69.290 521 141 3 55 575 1 502 0.0 728
MS.gene36331.t1 MTR_2g101650 55.993 584 246 6 1 580 1 577 0.0 686
MS.gene36331.t1 MTR_8g103233 46.805 579 295 6 16 586 6 579 0.0 537
MS.gene36331.t1 MTR_1g009200 47.804 592 292 8 5 584 1 587 9.98e-179 520
MS.gene36331.t1 MTR_1g026740 46.154 559 287 7 14 568 7 555 1.02e-175 511
MS.gene36331.t1 MTR_1g026750 47.232 578 284 9 14 586 8 569 1.19e-170 498
MS.gene36331.t1 MTR_1g026770 45.596 579 289 10 15 586 6 565 6.54e-165 484
MS.gene36331.t1 MTR_5g038060 36.457 587 348 11 15 585 19 596 1.85e-127 389
MS.gene36331.t1 MTR_4g107580 34.975 609 365 11 9 602 7 599 1.83e-122 376
MS.gene36331.t1 MTR_4g107510 36.991 565 344 8 11 566 20 581 1.08e-121 374
MS.gene36331.t1 MTR_5g055000 34.843 574 354 9 25 589 16 578 1.42e-118 365
MS.gene36331.t1 MTR_8g469480 35.789 570 342 10 30 583 41 602 1.01e-115 358
MS.gene36331.t1 MTR_7g088790 33.895 593 367 12 15 593 17 598 1.08e-115 358
MS.gene36331.t1 MTR_7g088820 32.945 601 378 12 10 598 8 595 1.87e-113 352
MS.gene36331.t1 MTR_4g107530 34.583 587 362 12 14 581 15 598 3.35e-113 352
MS.gene36331.t1 MTR_7g088825 32.776 598 377 13 17 600 12 598 1.07e-112 350
MS.gene36331.t1 MTR_8g469470 34.744 567 351 11 14 566 17 578 5.84e-109 340
MS.gene36331.t1 MTR_5g038190 34.215 567 348 13 14 566 10 565 4.98e-106 332
MS.gene36331.t1 MTR_3g462710 34.601 552 338 12 25 566 22 560 1.46e-101 320
MS.gene36331.t1 MTR_4g107610 31.667 600 385 12 14 601 18 604 3.47e-97 310
MS.gene36331.t1 MTR_1g009170 41.084 443 192 11 154 593 9 385 2.93e-96 301
MS.gene36331.t1 MTR_7g088820 31.868 546 347 12 65 598 1 533 4.80e-96 305
MS.gene36331.t1 MTR_4g015080 33.877 552 340 12 25 566 32 568 7.71e-96 306
MS.gene36331.t1 MTR_7g067010 32.743 565 346 11 15 560 3 552 4.72e-94 301
MS.gene36331.t1 MTR_7g064780 30.537 596 381 12 14 586 3 588 3.55e-92 296
MS.gene36331.t1 MTR_7g064800 31.325 581 370 14 25 589 24 591 5.11e-90 291
MS.gene36331.t1 MTR_3g112460 32.297 579 352 12 25 594 21 568 9.85e-88 285
MS.gene36331.t1 MTR_5g012270 30.986 568 365 15 25 579 26 579 1.46e-87 284
MS.gene36331.t1 MTR_3g112470 32.124 579 353 12 25 594 21 568 2.09e-87 283
MS.gene36331.t1 MTR_3g112450 33.055 599 356 14 7 594 6 570 3.17e-87 283
MS.gene36331.t1 MTR_7g088820 31.440 493 313 12 118 598 6 485 7.29e-85 274
MS.gene36331.t1 MTR_2g093160 33.563 581 334 16 1 566 1 544 7.70e-85 276
MS.gene36331.t1 MTR_2g093180 33.391 578 340 14 1 566 1 545 1.27e-83 273
MS.gene36331.t1 MTR_7g006540 32.378 593 353 15 29 592 65 638 3.16e-83 275
MS.gene36331.t1 MTR_2g093640 34.072 587 323 17 1 566 1 544 3.40e-83 272
MS.gene36331.t1 MTR_3g462710 35.129 464 278 12 113 566 1 451 2.47e-82 267
MS.gene36331.t1 MTR_7g098200 31.389 583 363 13 36 600 38 601 4.55e-82 270
MS.gene36331.t1 MTR_7g098200 31.652 575 362 13 36 600 38 591 5.56e-82 270
MS.gene36331.t1 MTR_4g033315 31.469 572 352 14 4 566 10 550 2.02e-81 268
MS.gene36331.t1 MTR_4g033310 31.469 572 352 14 4 566 10 550 2.02e-81 268
MS.gene36331.t1 MTR_5g012290 28.846 572 370 12 14 566 14 567 3.22e-81 268
MS.gene36331.t1 MTR_7g098220 31.311 610 379 16 11 604 12 597 4.84e-81 268
MS.gene36331.t1 MTR_1g075440 30.676 577 366 13 26 585 26 585 9.62e-81 266
MS.gene36331.t1 MTR_4g033325 31.944 576 342 14 4 566 10 548 5.35e-80 264
MS.gene36331.t1 MTR_4g101380 30.637 581 371 13 25 588 24 589 6.59e-80 265
MS.gene36331.t1 MTR_3g069500 29.256 605 385 14 1 589 1 578 2.08e-79 263
MS.gene36331.t1 MTR_5g085850 30.442 565 359 11 29 584 32 571 2.87e-79 263
MS.gene36331.t1 MTR_7g098040 30.964 591 376 15 26 600 32 606 5.07e-79 263
MS.gene36331.t1 MTR_7g098090 30.486 597 371 14 26 598 31 607 1.21e-78 261
MS.gene36331.t1 MTR_7g098220 31.359 574 356 14 45 604 4 553 1.61e-78 259
MS.gene36331.t1 MTR_7g098160 30.442 588 378 13 26 598 31 602 1.84e-78 261
MS.gene36331.t1 MTR_3g005010 31.047 554 339 10 25 570 28 546 3.86e-78 258
MS.gene36331.t1 MTR_1g041815 31.652 575 361 13 36 596 36 592 9.01e-78 259
MS.gene36331.t1 MTR_1g041835 31.183 558 354 12 36 579 36 577 1.03e-77 258
MS.gene36331.t1 MTR_7g098180 31.005 587 366 14 21 587 23 590 1.52e-77 258
MS.gene36331.t1 MTR_3g069420 31.915 564 354 14 36 588 43 587 1.55e-77 258
MS.gene36331.t1 MTR_3g069440 29.443 574 382 11 24 589 29 587 1.73e-77 258
MS.gene36331.t1 MTR_3g014790 31.272 566 331 13 21 563 11 541 2.78e-77 256
MS.gene36331.t1 MTR_4g114340 29.492 590 398 11 1 586 1 576 3.47e-77 257
MS.gene36331.t1 MTR_7g098230 30.769 572 358 14 41 594 40 591 5.47e-77 256
MS.gene36331.t1 MTR_3g072300 31.009 545 343 15 36 566 33 558 8.14e-77 256
MS.gene36331.t1 MTR_4g019580 30.168 537 354 12 36 566 45 566 1.11e-76 256
MS.gene36331.t1 MTR_0294s0020 30.890 573 352 14 4 566 10 548 4.19e-76 253
MS.gene36331.t1 MTR_1g042310 31.485 559 344 16 26 566 24 561 1.42e-75 253
MS.gene36331.t1 MTR_4g033330 31.127 559 339 16 4 551 10 533 1.85e-75 251
MS.gene36331.t1 MTR_7g065080 28.896 616 381 18 2 601 9 583 9.87e-75 250
MS.gene36331.t1 MTR_7g005930 29.302 587 385 11 10 586 18 584 4.71e-74 249
MS.gene36331.t1 MTR_1g042310 31.540 539 331 15 45 566 7 524 9.85e-74 247
MS.gene36331.t1 MTR_2g017750 28.952 601 401 14 1 584 11 602 4.23e-73 246
MS.gene36331.t1 MTR_8g038880 31.304 575 348 10 28 587 21 563 5.86e-73 245
MS.gene36331.t1 MTR_1g042310 31.413 538 331 15 46 566 1 517 1.07e-72 244
MS.gene36331.t1 MTR_3g100980 30.071 562 360 12 16 564 5 546 6.27e-72 243
MS.gene36331.t1 MTR_5g014150 28.881 554 381 8 37 582 54 602 1.29e-71 243
MS.gene36331.t1 MTR_7g065080 29.755 531 323 16 85 601 2 496 2.02e-69 234
MS.gene36331.t1 MTR_2g005130 27.844 589 388 14 11 586 18 582 2.11e-69 236
MS.gene36331.t1 MTR_4g033375 31.115 511 318 10 11 514 15 498 2.63e-69 234
MS.gene36331.t1 MTR_4g033325 31.692 467 273 12 112 566 18 450 2.77e-69 233
MS.gene36331.t1 MTR_8g087780 29.848 593 380 15 15 579 2 586 4.19e-69 235
MS.gene36331.t1 MTR_1g085090 27.496 611 404 15 11 611 3 584 6.39e-69 235
MS.gene36331.t1 MTR_1g041875 30.912 537 335 15 26 549 27 540 3.96e-68 233
MS.gene36331.t1 MTR_8g087810 30.626 591 379 16 15 579 2 587 5.70e-68 232
MS.gene36331.t1 MTR_4g033325 32.184 435 260 10 144 566 13 424 2.34e-67 226
MS.gene36331.t1 MTR_1g116930 28.998 569 365 13 15 566 8 554 2.51e-67 231
MS.gene36331.t1 MTR_7g098200 30.754 504 316 11 113 600 1 487 1.34e-66 226
MS.gene36331.t1 MTR_4g033385 31.533 463 282 12 112 566 16 451 2.20e-66 225
MS.gene36331.t1 MTR_3g100980 28.644 590 360 13 16 564 5 574 2.62e-66 228
MS.gene36331.t1 MTR_7g111260 29.078 564 365 14 11 565 3 540 3.83e-66 228
MS.gene36331.t1 MTR_4g033395 30.577 520 327 12 2 514 6 498 1.30e-65 224
MS.gene36331.t1 MTR_7g013270 29.295 553 361 10 26 566 89 623 1.21e-64 225
MS.gene36331.t1 MTR_1g041885 29.423 520 330 16 46 552 1 496 2.50e-64 221
MS.gene36331.t1 MTR_4g098800 28.172 536 364 8 37 563 46 569 4.06e-63 219
MS.gene36331.t1 MTR_4g098800 28.172 536 364 8 37 563 111 634 1.95e-62 219
MS.gene36331.t1 MTR_7g010820 29.004 562 364 15 1 544 2 546 6.54e-61 213
MS.gene36331.t1 MTR_4g107670 27.915 566 355 17 28 565 25 565 1.26e-60 212
MS.gene36331.t1 MTR_8g469310 26.903 565 360 14 28 565 27 565 5.10e-58 205
MS.gene36331.t1 MTR_5g038380 24.694 571 382 12 21 565 20 568 3.01e-54 195
MS.gene36331.t1 MTR_7g098150 30.995 442 273 12 26 454 31 453 2.98e-52 187
MS.gene36331.t1 MTR_4g123537 27.336 578 377 17 9 571 23 572 1.50e-51 188
MS.gene36331.t1 MTR_7g098210 28.897 526 272 15 46 561 1 434 1.45e-48 176
MS.gene36331.t1 MTR_6g008690 25.704 568 369 15 18 566 1 534 1.18e-46 173
MS.gene36331.t1 MTR_4g033310 30.462 325 205 6 247 566 178 486 4.32e-45 167
MS.gene36331.t1 MTR_4g033310 34.171 199 114 7 4 200 10 193 3.63e-16 82.0
MS.gene36331.t1 MTR_4g024930 25.818 550 361 15 29 566 38 552 3.78e-39 152
MS.gene36331.t1 MTR_7g052600 25.632 554 357 14 21 566 19 525 1.27e-38 150
MS.gene36331.t1 MTR_7g051880 24.343 571 377 13 4 566 2 525 1.21e-35 141
MS.gene36331.t1 MTR_7g051830 24.343 571 377 14 4 566 2 525 4.53e-34 137
MS.gene36331.t1 MTR_8g091265 39.695 131 71 5 294 420 3 129 3.67e-18 82.0
MS.gene36331.t1 MTR_7g064160 32.432 111 65 1 11 111 3 113 5.70e-14 69.3
MS.gene36331.t1 MTR_3g065350 25.749 167 112 3 336 500 1 157 3.73e-13 68.2
MS.gene36331.t1 MTR_4g033390 34.021 97 59 2 484 575 30 126 4.97e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36331.t1 AT1G52190 54.939 577 253 6 15 585 9 584 0.0 657
MS.gene36331.t1 AT3G16180 53.242 586 267 7 11 591 6 589 0.0 636
MS.gene36331.t1 AT1G69870 35.305 558 344 9 18 566 42 591 2.65e-119 368
MS.gene36331.t1 AT5G62680 37.271 601 351 14 9 593 25 615 2.80e-118 365
MS.gene36331.t1 AT1G68570 35.264 587 365 8 9 586 5 585 1.11e-114 355
MS.gene36331.t1 AT1G18880 34.896 576 353 11 30 594 22 586 2.44e-112 349
MS.gene36331.t1 AT3G47960 36.572 566 340 10 10 566 50 605 1.93e-111 348
MS.gene36331.t1 AT5G11570 38.787 544 249 11 28 567 14 477 7.51e-111 342
MS.gene36331.t1 AT1G27080 34.039 567 347 13 24 580 11 560 6.69e-106 332
MS.gene36331.t1 AT1G62200 35.079 573 345 10 1 562 25 581 1.56e-105 332
MS.gene36331.t1 AT1G68570 34.470 557 350 8 39 586 5 555 4.99e-103 324
MS.gene36331.t1 AT2G02040 33.857 573 356 11 5 566 18 578 5.51e-103 325
MS.gene36331.t1 AT3G54140 35.185 540 329 11 36 566 33 560 1.03e-100 318
MS.gene36331.t1 AT3G54140 35.185 540 329 11 36 566 33 560 1.03e-100 318
MS.gene36331.t1 AT1G62200 33.721 602 343 11 1 562 25 610 1.95e-100 319
MS.gene36331.t1 AT1G62200 33.721 602 343 11 1 562 39 624 3.59e-100 319
MS.gene36331.t1 AT5G01180 35.135 555 328 13 21 560 17 554 1.51e-99 315
MS.gene36331.t1 AT5G01180 35.135 555 328 13 21 560 17 554 1.51e-99 315
MS.gene36331.t1 AT5G01180 35.135 555 328 13 21 560 17 554 1.51e-99 315
MS.gene36331.t1 AT5G28470 33.517 543 342 10 25 559 15 546 9.11e-98 310
MS.gene36331.t1 AT1G27080 33.273 550 340 13 56 595 1 533 3.16e-97 308
MS.gene36331.t1 AT5G28470 33.333 543 341 11 25 559 15 544 6.22e-95 303
MS.gene36331.t1 AT3G45650 32.743 565 345 11 9 566 4 540 3.08e-91 293
MS.gene36331.t1 AT3G45660 32.855 557 345 12 14 566 8 539 4.75e-89 288
MS.gene36331.t1 AT3G45660 32.855 557 345 12 14 566 8 539 4.75e-89 288
MS.gene36331.t1 AT3G45660 32.855 557 345 12 14 566 29 560 8.99e-89 287
MS.gene36331.t1 AT3G54450 31.763 573 347 11 25 580 10 555 3.21e-87 283
MS.gene36331.t1 AT3G45650 31.303 591 345 12 9 566 4 566 5.23e-86 280
MS.gene36331.t1 AT3G45710 31.616 563 350 10 12 566 6 541 4.55e-85 277
MS.gene36331.t1 AT1G69860 32.671 554 338 11 25 566 16 546 1.53e-84 276
MS.gene36331.t1 AT2G02020 31.685 546 324 10 25 566 40 540 1.64e-84 275
MS.gene36331.t1 AT2G26690 30.192 573 383 10 13 581 10 569 1.59e-82 271
MS.gene36331.t1 AT3G45720 30.756 569 352 14 28 588 20 554 7.70e-80 263
MS.gene36331.t1 AT2G26690 30.642 545 361 10 41 581 5 536 1.08e-79 263
MS.gene36331.t1 AT5G46050 30.258 542 349 11 21 549 19 544 4.09e-79 262
MS.gene36331.t1 AT3G21670 29.431 598 392 12 11 599 12 588 1.20e-78 261
MS.gene36331.t1 AT2G26690 30.784 536 354 10 50 581 2 524 1.06e-77 257
MS.gene36331.t1 AT2G37900 29.273 550 356 12 24 563 34 560 7.05e-77 256
MS.gene36331.t1 AT3G45680 30.810 568 356 12 7 566 1 539 1.03e-76 255
MS.gene36331.t1 AT1G12110 31.771 576 361 15 21 579 19 579 1.16e-76 256
MS.gene36331.t1 AT1G22540 31.826 553 345 10 21 566 22 549 3.75e-76 253
MS.gene36331.t1 AT3G45700 30.319 564 346 12 11 566 5 529 2.36e-75 251
MS.gene36331.t1 AT1G72125 30.185 540 344 9 36 566 38 553 4.05e-74 248
MS.gene36331.t1 AT1G33440 28.477 604 385 15 9 589 18 597 8.51e-74 248
MS.gene36331.t1 AT5G46040 30.667 525 337 11 36 549 36 544 1.27e-73 248
MS.gene36331.t1 AT2G40460 29.946 551 353 12 36 575 33 561 1.86e-73 247
MS.gene36331.t1 AT5G13400 31.588 573 355 13 29 582 66 620 3.17e-73 248
MS.gene36331.t1 AT3G53960 27.750 609 401 14 10 594 6 599 2.03e-72 245
MS.gene36331.t1 AT2G37900 29.091 495 319 11 78 563 10 481 7.64e-71 238
MS.gene36331.t1 AT1G59740 28.924 567 371 13 11 563 23 571 4.01e-70 238
MS.gene36331.t1 AT1G72140 28.929 560 340 12 25 566 32 551 4.14e-70 237
MS.gene36331.t1 AT1G32450 28.147 572 388 9 37 592 47 611 3.43e-69 236
MS.gene36331.t1 AT2G02020 29.044 544 320 9 25 566 40 519 4.74e-69 234
MS.gene36331.t1 AT1G22550 29.948 581 362 13 2 566 5 556 1.06e-68 234
MS.gene36331.t1 AT1G72120 29.720 572 348 12 11 566 16 549 2.56e-67 230
MS.gene36331.t1 AT1G22570 29.084 557 361 9 2 547 5 538 9.39e-67 229
MS.gene36331.t1 AT5G46050 30.942 446 285 8 113 549 1 432 1.37e-66 226
MS.gene36331.t1 AT1G27040 28.650 548 359 10 29 565 29 555 1.77e-65 225
MS.gene36331.t1 AT1G27040 28.650 548 359 10 29 565 25 551 3.37e-65 224
MS.gene36331.t1 AT1G72130 28.261 552 342 10 25 566 23 530 2.16e-64 221
MS.gene36331.t1 AT1G22570 29.537 518 331 9 41 547 7 501 5.73e-64 220
MS.gene36331.t1 AT4G21680 27.304 586 383 14 3 566 6 570 6.30e-64 221
MS.gene36331.t1 AT1G27040 28.625 538 352 10 39 565 7 523 2.29e-62 216
MS.gene36331.t1 AT3G45690 28.801 559 323 15 15 566 6 496 4.36e-62 215
MS.gene36331.t1 AT5G19640 27.273 583 374 16 28 593 60 609 5.20e-58 206
MS.gene36331.t1 AT5G14940 25.000 588 353 12 25 572 5 544 1.07e-52 190
MS.gene36331.t1 AT1G69850 26.011 569 367 14 29 565 27 573 2.48e-52 190
MS.gene36331.t1 AT1G72130 28.406 433 266 9 144 566 14 412 1.78e-50 181
MS.gene36331.t1 AT1G72130 28.406 433 266 9 144 566 14 412 1.78e-50 181
MS.gene36331.t1 AT3G01350 25.694 576 374 16 25 572 5 554 3.46e-48 178
MS.gene36331.t1 AT5G62730 24.955 557 381 11 28 572 57 588 4.20e-47 175
MS.gene36331.t1 AT5G62730 24.954 549 375 11 36 572 6 529 1.02e-45 170
MS.gene36331.t1 AT3G25260 26.128 532 332 15 41 565 35 512 6.63e-45 167
MS.gene36331.t1 AT3G25280 25.385 520 335 14 52 565 46 518 6.03e-37 145
MS.gene36331.t1 AT2G38100 24.081 544 353 13 55 586 2 497 1.20e-28 120
MS.gene36331.t1 AT2G38100 24.081 544 353 13 55 586 18 513 3.29e-28 119
MS.gene36331.t1 AT2G38100 24.081 544 353 13 55 586 24 519 4.07e-28 119

Find 124 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAAAGCTCTATTGTTAT+TGG 0.116841 2.2:+2059773 None:intergenic
CTTTGTAATAAAACTCATTT+TGG 0.123205 2.2:+2058745 None:intergenic
GTCATTTCGACAAATATTTA+TGG 0.147038 2.2:-2058569 MS.gene36331:CDS
GATCATCTTGGTTGGAAAAT+TGG 0.157074 2.2:-2059675 MS.gene36331:CDS
GCTGAAGCATTCAATGTTAT+TGG 0.158926 2.2:-2058768 MS.gene36331:CDS
AAATAAAGCTTGTGTTATTA+AGG 0.217505 2.2:-2059297 MS.gene36331:CDS
TTATCTTTGTAATACTTATA+TGG 0.221781 2.2:-2059037 MS.gene36331:CDS
ATTTCATGTTCTTTAGCTTT+TGG 0.223707 2.2:-2059825 MS.gene36331:CDS
CAATGGAATAACTTTAATAA+TGG 0.287573 2.2:+2059190 None:intergenic
GCTTGCACCTTCACTTTGTT+TGG 0.290635 2.2:-2058799 MS.gene36331:CDS
TTTATTGCAGATTCTTATAT+TGG 0.292916 2.2:-2060981 MS.gene36331:CDS
CTTGGTTGGAAAATTGGTTT+TGG 0.297432 2.2:-2059669 MS.gene36331:CDS
TTCAAGATTAGTGAAGAAAA+TGG 0.297883 2.2:-2058312 MS.gene36331:CDS
TTAGTATGCAGTTGGGCTTA+TGG 0.310648 2.2:-2058507 MS.gene36331:CDS
GCTGTCATAGCAGCTCTATT+TGG 0.312595 2.2:-2059714 MS.gene36331:CDS
GATAAGATACCAATGATAAA+AGG 0.324542 2.2:+2061248 None:intergenic
TGAAATGATATGTCTGTCTA+AGG 0.326067 2.2:+2059103 None:intergenic
CAAGTAGGAGGCTGCGTAGC+TGG 0.330610 2.2:+2059942 None:intergenic
GTTATTCCATTGTGGTCAAC+AGG 0.337103 2.2:-2059179 MS.gene36331:CDS
AAGGAGAAAGAAAGCAATTC+AGG 0.340505 2.2:-2058871 MS.gene36331:CDS
AGGTTCTATTATCAGTTTCC+TGG 0.349967 2.2:-2060937 MS.gene36331:intron
ATTAACATCGGAGGCTCGTT+TGG 0.355446 2.2:-2059143 MS.gene36331:CDS
GCGTTAATTCTGATAGGAAT+TGG 0.359891 2.2:-2059858 MS.gene36331:CDS
TTTGCTGATATACAGCCTTC+AGG 0.359961 2.2:+2059909 None:intergenic
GAAACACTAGACATAGTCTT+TGG 0.360014 2.2:+2058717 None:intergenic
CAACATGATATTGTATTTGA+TGG 0.361317 2.2:-2061090 MS.gene36331:CDS
GCACCTTCACTTTGTTTGGC+TGG 0.361719 2.2:-2058795 MS.gene36331:CDS
CCTCTTATCTTTGATGCTAA+AGG 0.364995 2.2:+2058987 None:intergenic
TCATTTCGACAAATATTTAT+GGG 0.366923 2.2:-2058568 MS.gene36331:CDS
AAAAGAAGACACCAAGTTTC+CGG 0.373199 2.2:+2058665 None:intergenic
AGTGTTTCTTCAGCACTCTC+TGG 0.375458 2.2:-2058702 MS.gene36331:CDS
CTAACCTTGTCATCAATTTG+TGG 0.379224 2.2:+2058402 None:intergenic
TTCCAATAACAATAGAGCTT+TGG 0.382182 2.2:-2059775 MS.gene36331:CDS
AGACCACCCTTGCTTCTTTG+TGG 0.395960 2.2:+2061281 None:intergenic
TCCAAAGTGAGTGAAGAAAA+TGG 0.396852 2.2:-2058465 MS.gene36331:CDS
CGATTCCTAGGTGTTGGAAT+AGG 0.398985 2.2:-2060957 MS.gene36331:CDS
TCTTATATTGGTCGATTCCT+AGG 0.404111 2.2:-2060969 MS.gene36331:CDS
TTCTTCAGCACTCTCTGGAT+TGG 0.405295 2.2:-2058697 MS.gene36331:CDS
CCTTTAGCATCAAAGATAAG+AGG 0.419532 2.2:-2058987 MS.gene36331:CDS
ATCAAATACAATATCATGTT+GGG 0.422265 2.2:+2061092 None:intergenic
CTTTGGAAATATTCTTCACT+TGG 0.431586 2.2:-2059758 MS.gene36331:CDS
ATCAGCAAAACCAGGTCAAA+TGG 0.449605 2.2:-2059895 MS.gene36331:CDS
CCAAGTCCCATTCTTATCTT+CGG 0.449902 2.2:+2058945 None:intergenic
TGTATTATTTAGTATGCAGT+TGG 0.452225 2.2:-2058515 MS.gene36331:CDS
CTCTCTGCGTTAATTCTGAT+AGG 0.460782 2.2:-2059864 MS.gene36331:CDS
GGCAATGGCTGCCGGAAACT+TGG 0.462855 2.2:-2058676 MS.gene36331:CDS
TGCTGCTGATGAAGAAGAAA+TGG 0.464327 2.2:-2061318 MS.gene36331:CDS
CCGAAGATAAGAATGGGACT+TGG 0.464562 2.2:-2058945 MS.gene36331:CDS
AAATATTTATGGGTTATAGC+TGG 0.467548 2.2:-2058558 MS.gene36331:CDS
ACTTCAAGTGGAGGAAAAGA+TGG 0.470588 2.2:-2058618 MS.gene36331:CDS
TAGTGAAGAAAATGGCTTGA+AGG 0.470983 2.2:-2058304 MS.gene36331:CDS
GCAATAAAAGCAGCAACAAC+AGG 0.471001 2.2:+2060996 None:intergenic
ATTCTGATAGGAATTGGAAA+TGG 0.478772 2.2:-2059852 MS.gene36331:CDS
CTTGCTAGGATGGCAAGTAC+TGG 0.481516 2.2:-2061122 MS.gene36331:CDS
TCTGGATTGGCAATGGCTGC+CGG 0.481828 2.2:-2058684 MS.gene36331:CDS
TTGTTCCAACTGATAGACTA+AGG 0.483967 2.2:-2059449 MS.gene36331:intron
TGAATTCAAGAATGGTGGTC+AGG 0.484071 2.2:-2058346 MS.gene36331:CDS
ATTGGTCGATTCCTAGGTGT+TGG 0.484458 2.2:-2060963 MS.gene36331:CDS
TAATGAGGCACTTGCTAGGA+TGG 0.505197 2.2:-2061132 MS.gene36331:CDS
GTATTATTTAGTATGCAGTT+GGG 0.508088 2.2:-2058514 MS.gene36331:CDS
ATCAGTCCGAAGATAAGAAT+GGG 0.508597 2.2:-2058951 MS.gene36331:CDS
CTTCTCATATCCTCTGCAGC+TGG 0.510191 2.2:-2061029 MS.gene36331:CDS
AAGTTCAAACTTTGAAGTAC+CGG 0.513148 2.2:-2059081 MS.gene36331:CDS
CATCAAATACAATATCATGT+TGG 0.518744 2.2:+2061091 None:intergenic
GATATAAGCATGAGTGCTGC+TGG 0.520880 2.2:+2059642 None:intergenic
TATCAGTCCGAAGATAAGAA+TGG 0.521040 2.2:-2058952 MS.gene36331:CDS
ATCTTCGGACTGATACTCAC+TGG 0.523009 2.2:+2058960 None:intergenic
AGCACTCTCTGGATTGGCAA+TGG 0.530645 2.2:-2058691 MS.gene36331:CDS
AGGCTGCGTAGCTGGGATCA+TGG 0.530855 2.2:+2059950 None:intergenic
AACATGATATTGTATTTGAT+GGG 0.530924 2.2:-2061089 MS.gene36331:CDS
AAGTAGGAGGCTGCGTAGCT+GGG 0.540101 2.2:+2059943 None:intergenic
CAAAGAACCAGCTTGCTCAC+TGG 0.541714 2.2:-2059573 MS.gene36331:CDS
CTTTAGCATCAAAGATAAGA+GGG 0.548696 2.2:-2058986 MS.gene36331:CDS
CTGATAGGAATTGGAAATGG+TGG 0.549275 2.2:-2059849 MS.gene36331:CDS
ATTGAAAACACTACTTCAAG+TGG 0.549303 2.2:-2058630 MS.gene36331:CDS
ATTTATTGTTGAACCATCTG+AGG 0.553024 2.2:+2059256 None:intergenic
CAATCCACAAATTGATGACA+AGG 0.554131 2.2:-2058406 MS.gene36331:CDS
AGTAACATTGCCATTTGACC+TGG 0.557875 2.2:+2059885 None:intergenic
ATATAAGTATTACAAAGATA+AGG 0.558130 2.2:+2059039 None:intergenic
ATGGTTCAACAATAAATCGT+TGG 0.560017 2.2:-2059250 MS.gene36331:CDS
CAGCTAATGAGGCACTTGCT+AGG 0.560867 2.2:-2061136 MS.gene36331:CDS
GAGTAGCTGTAGCAAGATGA+AGG 0.565218 2.2:+2061057 None:intergenic
ATATCCAAGATCATCTTGGT+TGG 0.566372 2.2:-2059683 MS.gene36331:CDS
GGTGGATTGCTGCAAGTAGG+AGG 0.569731 2.2:+2059930 None:intergenic
GAGTTAACTGAATTCAAGAA+TGG 0.573785 2.2:-2058354 MS.gene36331:CDS
TCAAACTTTGAAGTACCGGC+AGG 0.576815 2.2:-2059077 MS.gene36331:CDS
TTGGATACTTGATCAGCTGT+AGG 0.577217 2.2:+2058483 None:intergenic
TGCAAAACCAGTGAGCAAGC+TGG 0.577546 2.2:+2059566 None:intergenic
GTATATATCCAAGATCATCT+TGG 0.577864 2.2:-2059687 MS.gene36331:CDS
TGAAGAAAATGGCTTGAAGG+AGG 0.581996 2.2:-2058301 MS.gene36331:CDS
CGAAGATAAGAATGGGACTT+GGG 0.582353 2.2:-2058944 MS.gene36331:CDS
GATTTCTGATAATATTAACA+AGG 0.582713 2.2:-2058592 MS.gene36331:CDS
AGGATGGCAAGTACTGGACT+TGG 0.587802 2.2:-2061116 MS.gene36331:CDS
TAGTGATGAAACTAGTTCAA+AGG 0.587940 2.2:-2058382 MS.gene36331:CDS
TGTGAAATTTCCAGCTGCAG+AGG 0.589353 2.2:+2061019 None:intergenic
AGAAAGAAAGCAATTCAGGC+AGG 0.591725 2.2:-2058867 MS.gene36331:CDS
TTATTAAAGTTATTCCATTG+TGG 0.594692 2.2:-2059187 MS.gene36331:CDS
GAGTGAAGAAAATGGTTCCA+AGG 0.598642 2.2:-2058457 MS.gene36331:CDS
CTTCAAGTGGAGGAAAAGAT+GGG 0.602416 2.2:-2058617 MS.gene36331:CDS
GATACCAATGATAAAAGGCA+TGG 0.603181 2.2:+2061253 None:intergenic
GTATACCTTAGTCTATCAGT+TGG 0.607004 2.2:+2059444 None:intergenic
GGCTGTATATCAGCAAAACC+AGG 0.607418 2.2:-2059903 MS.gene36331:CDS
TGCTATGACAGCTATAGTTG+TGG 0.614444 2.2:+2059725 None:intergenic
GAACAAGATATAGCCTCAGA+TGG 0.621248 2.2:-2059269 MS.gene36331:CDS
GCTGATATACAGCCTTCAGG+TGG 0.623699 2.2:+2059912 None:intergenic
TTAACTGAATTCAAGAATGG+TGG 0.626429 2.2:-2058351 MS.gene36331:CDS
AGCAAGAAAGAATAAGACAG+TGG 0.634801 2.2:+2059620 None:intergenic
ATTATAGTAAAAGATCCTGC+CGG 0.635315 2.2:+2059062 None:intergenic
GAAAACACTACTTCAAGTGG+AGG 0.636406 2.2:-2058627 MS.gene36331:CDS
TTATTCCATTGTGGTCAACA+GGG 0.637429 2.2:-2059178 MS.gene36331:CDS
ACTTGCAGCAATCCACCTGA+AGG 0.637785 2.2:-2059924 MS.gene36331:CDS
ATGATGGTAAAATTCAGGTG+AGG 0.641850 2.2:+2059491 None:intergenic
GCGATCCCTGTTGACCACAA+TGG 0.645059 2.2:+2059173 None:intergenic
ATTTCTGATAATATTAACAA+GGG 0.652732 2.2:-2058591 MS.gene36331:CDS
TCAGGTGGATTGCTGCAAGT+AGG 0.653513 2.2:+2059927 None:intergenic
ATACCAGCCAAACAAAGTGA+AGG 0.655978 2.2:+2058792 None:intergenic
ATCGCAATGTCAATTAACAT+CGG 0.666056 2.2:-2059155 MS.gene36331:CDS
AAACCACAAAGAAGCAAGGG+TGG 0.667497 2.2:-2061284 MS.gene36331:CDS
GCAATGTCAATTAACATCGG+AGG 0.675020 2.2:-2059152 MS.gene36331:CDS
CAAGTGGAGGAAAAGATGGG+TGG 0.675884 2.2:-2058614 MS.gene36331:CDS
TATAGGGAATGTCAATGCTG+TGG 0.699156 2.2:-2059980 MS.gene36331:intron
TGAAGAAAATGGTTCCAAGG+AGG 0.705179 2.2:-2058454 MS.gene36331:CDS
TAGAACCTATTCCAACACCT+AGG 0.705760 2.2:+2060952 None:intergenic
TGTTGAAAATGTCTGCAATG+TGG 0.749104 2.2:-2058821 MS.gene36331:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAATTAAAGATATATT+AGG - chr2.2:2059214-2059233 MS.gene36331:CDS 10.0%
!!! AATTAATATTCTGAAATTAT+AGG - chr2.2:2059590-2059609 MS.gene36331:CDS 10.0%
!! AATGAATATATAATATTACC+AGG + chr2.2:2058730-2058749 None:intergenic 15.0%
!! ATATAAGTATTACAAAGATA+AGG + chr2.2:2060610-2060629 None:intergenic 15.0%
!! ATATTATTAAGTCCAATTAT+GGG - chr2.2:2058813-2058832 MS.gene36331:CDS 15.0%
!! ATTTCTGATAATATTAACAA+GGG - chr2.2:2061055-2061074 MS.gene36331:CDS 15.0%
!! CTTCTTTCAAAAAAAAAAAA+AGG + chr2.2:2058984-2059003 None:intergenic 15.0%
!! TATGAAAAAGAATCATATAA+AGG - chr2.2:2059534-2059553 MS.gene36331:CDS 15.0%
!! TTATCTTTGTAATACTTATA+TGG - chr2.2:2060609-2060628 MS.gene36331:intron 15.0%
!!! AATTTTCTTTTCTTTTAACT+TGG + chr2.2:2059853-2059872 None:intergenic 15.0%
!! AAACAAACAAACAAAAAAGA+AGG + chr2.2:2059641-2059660 None:intergenic 20.0%
!! AACATGATATTGTATTTGAT+GGG - chr2.2:2058557-2058576 MS.gene36331:CDS 20.0%
!! ACTCGAATATTTAATTGATA+TGG + chr2.2:2059430-2059449 None:intergenic 20.0%
!! ATAGGTATAATGAAAAAAGT+TGG - chr2.2:2059608-2059627 MS.gene36331:CDS 20.0%
!! ATCAAATACAATATCATGTT+GGG + chr2.2:2058557-2058576 None:intergenic 20.0%
!! ATGAAATCAAACGTTTAATA+TGG + chr2.2:2060317-2060336 None:intergenic 20.0%
!! CAATGGAATAACTTTAATAA+TGG + chr2.2:2060459-2060478 None:intergenic 20.0%
!! CATATTATTAAGTCCAATTA+TGG - chr2.2:2058812-2058831 MS.gene36331:CDS 20.0%
!! CTCGAATATTTAATTGATAT+GGG + chr2.2:2059429-2059448 None:intergenic 20.0%
!! GATTTCTGATAATATTAACA+AGG - chr2.2:2061054-2061073 MS.gene36331:CDS 20.0%
!! TATCATGGAAATGAAAAAAA+AGG + chr2.2:2058765-2058784 None:intergenic 20.0%
!! TCATTTCGACAAATATTTAT+GGG - chr2.2:2061078-2061097 MS.gene36331:CDS 20.0%
!! TGAAATCAAACGTTTAATAT+GGG + chr2.2:2060316-2060335 None:intergenic 20.0%
!! TTATTAAAGTTATTCCATTG+TGG - chr2.2:2060459-2060478 MS.gene36331:intron 20.0%
!! TTTATTGCAGATTCTTATAT+TGG - chr2.2:2058665-2058684 MS.gene36331:CDS 20.0%
!!! AAAAGATAAGAAAAGTATCA+TGG + chr2.2:2058780-2058799 None:intergenic 20.0%
!!! AAATAAAGCTTGTGTTATTA+AGG - chr2.2:2060349-2060368 MS.gene36331:intron 20.0%
!!! CTTTATTTTTACTTTGAATG+AGG - chr2.2:2058447-2058466 MS.gene36331:CDS 20.0%
!!! CTTTGTAATAAAACTCATTT+TGG + chr2.2:2060904-2060923 None:intergenic 20.0%
!!! GTTTTTTAATTTTCTTCACT+TGG - chr2.2:2060727-2060746 MS.gene36331:intron 20.0%
!!! TAATTTTAAAAAGGAATCTG+AGG + chr2.2:2059494-2059513 None:intergenic 20.0%
!!! TGAAAGTTTTCTGTTTTTAT+AGG + chr2.2:2060122-2060141 None:intergenic 20.0%
!!! TGTTATTTGAACAAAAATTC+AGG - chr2.2:2060273-2060292 MS.gene36331:intron 20.0%
!!! TTTGTTTGTTTGTTGTTATA+GGG - chr2.2:2059650-2059669 MS.gene36331:CDS 20.0%
!!! TTTTTATGATGGTAAAATTC+AGG + chr2.2:2060163-2060182 None:intergenic 20.0%
!!! TTTTTGCTTATAATAATGAC+CGG + chr2.2:2059065-2059084 None:intergenic 20.0%
! ACAAATATTATTGTAGATCC+AGG + chr2.2:2059020-2059039 None:intergenic 25.0%
! ATACAATTTACTCCCATAAT+TGG + chr2.2:2058828-2058847 None:intergenic 25.0%
! ATATGCAAAAGCTATAAAGA+TGG + chr2.2:2060227-2060246 None:intergenic 25.0%
! CAACATGATATTGTATTTGA+TGG - chr2.2:2058556-2058575 MS.gene36331:CDS 25.0%
! CATCAAATACAATATCATGT+TGG + chr2.2:2058558-2058577 None:intergenic 25.0%
! GATAAGATACCAATGATAAA+AGG + chr2.2:2058401-2058420 None:intergenic 25.0%
! GTATTATTTAGTATGCAGTT+GGG - chr2.2:2061132-2061151 MS.gene36331:CDS 25.0%
! GTCATTTCGACAAATATTTA+TGG - chr2.2:2061077-2061096 MS.gene36331:CDS 25.0%
! TAAGCAAAAATCAACATTCT+AGG + chr2.2:2059165-2059184 None:intergenic 25.0%
! TGTATTATTTAGTATGCAGT+TGG - chr2.2:2061131-2061150 MS.gene36331:CDS 25.0%
! TTCAAGATTAGTGAAGAAAA+TGG - chr2.2:2061334-2061353 MS.gene36331:CDS 25.0%
! TTCTAGGTTCATTCATTAAA+TGG + chr2.2:2059149-2059168 None:intergenic 25.0%
!! AAATATTTATGGGTTATAGC+TGG - chr2.2:2061088-2061107 MS.gene36331:CDS 25.0%
!! GGATTTTTGAATAATACTCA+TGG - chr2.2:2060800-2060819 MS.gene36331:intron 25.0%
!! TGTGTAATTTTCACATAAAG+AGG + chr2.2:2060055-2060074 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr2.2:2059175-2059194 MS.gene36331:CDS 25.0%
!!! AAACGTTTGATTTCATTTTC+AGG - chr2.2:2060321-2060340 MS.gene36331:intron 25.0%
!!! ATTTCATGTTCTTTAGCTTT+TGG - chr2.2:2059821-2059840 MS.gene36331:CDS 25.0%
!!! GTTTGTTTGTTTGTTGTTAT+AGG - chr2.2:2059649-2059668 MS.gene36331:CDS 25.0%
AGAAAGAATCACAAATCAAG+GGG + chr2.2:2059325-2059344 None:intergenic 30.0%
ATCGCAATGTCAATTAACAT+CGG - chr2.2:2060491-2060510 MS.gene36331:intron 30.0%
ATGGTTCAACAATAAATCGT+TGG - chr2.2:2060396-2060415 MS.gene36331:intron 30.0%
ATTATAGTAAAAGATCCTGC+CGG + chr2.2:2060587-2060606 None:intergenic 30.0%
ATTCTGATAGGAATTGGAAA+TGG - chr2.2:2059794-2059813 MS.gene36331:CDS 30.0%
ATTGAAAACACTACTTCAAG+TGG - chr2.2:2061016-2061035 MS.gene36331:CDS 30.0%
ATTTATTGTTGAACCATCTG+AGG + chr2.2:2060393-2060412 None:intergenic 30.0%
CATTCATTAAATGGTGTATG+CGG + chr2.2:2059140-2059159 None:intergenic 30.0%
CTTTAGCATCAAAGATAAGA+GGG - chr2.2:2060660-2060679 MS.gene36331:intron 30.0%
GAACACTTGAATTGAATCTA+TGG - chr2.2:2059236-2059255 MS.gene36331:CDS 30.0%
GAGAAAGAATCACAAATCAA+GGG + chr2.2:2059326-2059345 None:intergenic 30.0%
GAGTTAACTGAATTCAAGAA+TGG - chr2.2:2061292-2061311 MS.gene36331:CDS 30.0%
GTATATATCCAAGATCATCT+TGG - chr2.2:2059959-2059978 MS.gene36331:CDS 30.0%
TAATCATACTTCAATGCAGA+AGG - chr2.2:2058929-2058948 MS.gene36331:CDS 30.0%
TAGTGATGAAACTAGTTCAA+AGG - chr2.2:2061264-2061283 MS.gene36331:CDS 30.0%
TATTACTCCCTCTCTTATAA+AGG - chr2.2:2058888-2058907 MS.gene36331:CDS 30.0%
TGAAATGATATGTCTGTCTA+AGG + chr2.2:2060546-2060565 None:intergenic 30.0%
TGAGAAAGAATCACAAATCA+AGG + chr2.2:2059327-2059346 None:intergenic 30.0%
TTAACTGAATTCAAGAATGG+TGG - chr2.2:2061295-2061314 MS.gene36331:CDS 30.0%
TTCCAAAGCTCTATTGTTAT+TGG + chr2.2:2059876-2059895 None:intergenic 30.0%
TTCCAATAACAATAGAGCTT+TGG - chr2.2:2059871-2059890 MS.gene36331:CDS 30.0%
TTGAATATACGTACCAAGTT+TGG + chr2.2:2059572-2059591 None:intergenic 30.0%
TTTGTGATTCTTTCTCAACT+AGG - chr2.2:2059330-2059349 MS.gene36331:intron 30.0%
! AGAAGCATATATGTATAACC+TGG - chr2.2:2058999-2059018 MS.gene36331:CDS 30.0%
! ATCTGAAACATAAAGAGAGA+CGG - chr2.2:2059281-2059300 MS.gene36331:CDS 30.0%
! CTTTGGAAATATTCTTCACT+TGG - chr2.2:2059888-2059907 MS.gene36331:CDS 30.0%
! TAAAATTCAGGTGAGGTTTT+CGG + chr2.2:2060151-2060170 None:intergenic 30.0%
!! AAGTTCAAACTTTGAAGTAC+CGG - chr2.2:2060565-2060584 MS.gene36331:intron 30.0%
!! CAGCAATTTTTGAGAGTATA+AGG - chr2.2:2060756-2060775 MS.gene36331:intron 30.0%
!!! GATCTGAGTCTTTTTTATGA+TGG + chr2.2:2060174-2060193 None:intergenic 30.0%
AAAAGAAGACACCAAGTTTC+CGG + chr2.2:2060984-2061003 None:intergenic 35.0%
AAGGAGAAAGAAAGCAATTC+AGG - chr2.2:2060775-2060794 MS.gene36331:intron 35.0%
AATATACGTACCAAGTTTGG+TGG + chr2.2:2059569-2059588 None:intergenic 35.0%
AATCTATGGCTAAAGTCTGT+GGG - chr2.2:2059250-2059269 MS.gene36331:CDS 35.0%
ACAAAAACCACAAAGAAGCA+AGG - chr2.2:2058358-2058377 MS.gene36331:CDS 35.0%
AGCAAGAAAGAATAAGACAG+TGG + chr2.2:2060029-2060048 None:intergenic 35.0%
AGGTTCTATTATCAGTTTCC+TGG - chr2.2:2058709-2058728 MS.gene36331:CDS 35.0%
ATATCCAAGATCATCTTGGT+TGG - chr2.2:2059963-2059982 MS.gene36331:CDS 35.0%
ATCAGTCCGAAGATAAGAAT+GGG - chr2.2:2060695-2060714 MS.gene36331:intron 35.0%
ATGATGGTAAAATTCAGGTG+AGG + chr2.2:2060158-2060177 None:intergenic 35.0%
CAAAAACCACAAAGAAGCAA+GGG - chr2.2:2058359-2058378 MS.gene36331:CDS 35.0%
CCTCTTATCTTTGATGCTAA+AGG + chr2.2:2060662-2060681 None:intergenic 35.0%
CCTTTAGCATCAAAGATAAG+AGG - chr2.2:2060659-2060678 MS.gene36331:intron 35.0%
CTAACCTTGTCATCAATTTG+TGG + chr2.2:2061247-2061266 None:intergenic 35.0%
CTCTCTTATAAAGGAACAGA+GGG - chr2.2:2058897-2058916 MS.gene36331:CDS 35.0%
CTCTGTTCCTTTATAAGAGA+GGG + chr2.2:2058898-2058917 None:intergenic 35.0%
GAAAAAAGTTCCACCAAACT+TGG - chr2.2:2059556-2059575 MS.gene36331:CDS 35.0%
GAAACACTAGACATAGTCTT+TGG + chr2.2:2060932-2060951 None:intergenic 35.0%
GATACCAATGATAAAAGGCA+TGG + chr2.2:2058396-2058415 None:intergenic 35.0%
GATCATCTTGGTTGGAAAAT+TGG - chr2.2:2059971-2059990 MS.gene36331:CDS 35.0%
GCGTTAATTCTGATAGGAAT+TGG - chr2.2:2059788-2059807 MS.gene36331:CDS 35.0%
GTATACCTTAGTCTATCAGT+TGG + chr2.2:2060205-2060224 None:intergenic 35.0%
TAGTGAAGAAAATGGCTTGA+AGG - chr2.2:2061342-2061361 MS.gene36331:CDS 35.0%
TATCAGTCCGAAGATAAGAA+TGG - chr2.2:2060694-2060713 MS.gene36331:intron 35.0%
TCCAAAGTGAGTGAAGAAAA+TGG - chr2.2:2061181-2061200 MS.gene36331:intron 35.0%
TGCTTATAATAATGACCGGA+GGG + chr2.2:2059061-2059080 None:intergenic 35.0%
TGTTGAAAATGTCTGCAATG+TGG - chr2.2:2060825-2060844 MS.gene36331:intron 35.0%
TTATTCCATTGTGGTCAACA+GGG - chr2.2:2060468-2060487 MS.gene36331:intron 35.0%
TTGCTTATAATAATGACCGG+AGG + chr2.2:2059062-2059081 None:intergenic 35.0%
TTGTTCCAACTGATAGACTA+AGG - chr2.2:2060197-2060216 MS.gene36331:intron 35.0%
! ACCATTTTCTTCACTCACTT+TGG + chr2.2:2061185-2061204 None:intergenic 35.0%
! CAATCCACAAATTGATGACA+AGG - chr2.2:2061240-2061259 MS.gene36331:intron 35.0%
! GCTGAAGCATTCAATGTTAT+TGG - chr2.2:2060878-2060897 MS.gene36331:intron 35.0%
! TCTTATATTGGTCGATTCCT+AGG - chr2.2:2058677-2058696 MS.gene36331:CDS 35.0%
! TTCAGTTGAATTTTCCTCCT+TGG + chr2.2:2061209-2061228 None:intergenic 35.0%
! TTTTCCAACCAAGATGATCT+TGG + chr2.2:2059970-2059989 None:intergenic 35.0%
!! CTTGGTTGGAAAATTGGTTT+TGG - chr2.2:2059977-2059996 MS.gene36331:CDS 35.0%
!!! TTTTGTTGTTGCAGCTAATG+AGG - chr2.2:2058499-2058518 MS.gene36331:CDS 35.0%
ACTAGGACTCCATATGTCTT+AGG - chr2.2:2059347-2059366 MS.gene36331:intron 40.0%
ACTTCAAGTGGAGGAAAAGA+TGG - chr2.2:2061028-2061047 MS.gene36331:CDS 40.0%
AGAAAGAAAGCAATTCAGGC+AGG - chr2.2:2060779-2060798 MS.gene36331:intron 40.0%
ATACCAGCCAAACAAAGTGA+AGG + chr2.2:2060857-2060876 None:intergenic 40.0%
ATCAGCAAAACCAGGTCAAA+TGG - chr2.2:2059751-2059770 MS.gene36331:CDS 40.0%
CCAAGTCCCATTCTTATCTT+CGG + chr2.2:2060704-2060723 None:intergenic 40.0%
CCTCTCTTATAAAGGAACAG+AGG - chr2.2:2058896-2058915 MS.gene36331:CDS 40.0%
CCTCTGTTCCTTTATAAGAG+AGG + chr2.2:2058899-2058918 None:intergenic 40.0%
CGAAGATAAGAATGGGACTT+GGG - chr2.2:2060702-2060721 MS.gene36331:intron 40.0%
CTCTCTGCGTTAATTCTGAT+AGG - chr2.2:2059782-2059801 MS.gene36331:CDS 40.0%
CTGATAGGAATTGGAAATGG+TGG - chr2.2:2059797-2059816 MS.gene36331:CDS 40.0%
CTTCAAGTGGAGGAAAAGAT+GGG - chr2.2:2061029-2061048 MS.gene36331:CDS 40.0%
GAAAACACTACTTCAAGTGG+AGG - chr2.2:2061019-2061038 MS.gene36331:CDS 40.0%
GAACAAGATATAGCCTCAGA+TGG - chr2.2:2060377-2060396 MS.gene36331:intron 40.0%
GAATCTATGGCTAAAGTCTG+TGG - chr2.2:2059249-2059268 MS.gene36331:CDS 40.0%
GAGTGAAGAAAATGGTTCCA+AGG - chr2.2:2061189-2061208 MS.gene36331:intron 40.0%
GCAATAAAAGCAGCAACAAC+AGG + chr2.2:2058653-2058672 None:intergenic 40.0%
GCAATGTCAATTAACATCGG+AGG - chr2.2:2060494-2060513 MS.gene36331:intron 40.0%
GTTATTCCATTGTGGTCAAC+AGG - chr2.2:2060467-2060486 MS.gene36331:intron 40.0%
GTTGTCTTGCCTAAGACATA+TGG + chr2.2:2059359-2059378 None:intergenic 40.0%
TAGAACCTATTCCAACACCT+AGG + chr2.2:2058697-2058716 None:intergenic 40.0%
TATAGGGAATGTCAATGCTG+TGG - chr2.2:2059666-2059685 MS.gene36331:CDS 40.0%
TCAATATGTTGTACACCCTC+CGG + chr2.2:2059197-2059216 None:intergenic 40.0%
TGAAGAAAATGGCTTGAAGG+AGG - chr2.2:2061345-2061364 MS.gene36331:CDS 40.0%
TGAAGAAAATGGTTCCAAGG+AGG - chr2.2:2061192-2061211 MS.gene36331:intron 40.0%
TGAATTCAAGAATGGTGGTC+AGG - chr2.2:2061300-2061319 MS.gene36331:CDS 40.0%
TGCTATGACAGCTATAGTTG+TGG + chr2.2:2059924-2059943 None:intergenic 40.0%
TGCTGCTGATGAAGAAGAAA+TGG - chr2.2:2058328-2058347 MS.gene36331:CDS 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr2.2:2059179-2059198 MS.gene36331:CDS 40.0%
TTAGTATGCAGTTGGGCTTA+TGG - chr2.2:2061139-2061158 MS.gene36331:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr2.2:2059178-2059197 MS.gene36331:CDS 40.0%
TTGGATACTTGATCAGCTGT+AGG + chr2.2:2061166-2061185 None:intergenic 40.0%
TTTGCTGATATACAGCCTTC+AGG + chr2.2:2059740-2059759 None:intergenic 40.0%
! AGTAACATTGCCATTTGACC+TGG + chr2.2:2059764-2059783 None:intergenic 40.0%
! GTCACCATGCCTTTTATCAT+TGG - chr2.2:2058389-2058408 MS.gene36331:CDS 40.0%
AAACCACAAAGAAGCAAGGG+TGG - chr2.2:2058362-2058381 MS.gene36331:CDS 45.0%
AGTGTTTCTTCAGCACTCTC+TGG - chr2.2:2060944-2060963 MS.gene36331:CDS 45.0%
ATCTTCGGACTGATACTCAC+TGG + chr2.2:2060689-2060708 None:intergenic 45.0%
ATTAACATCGGAGGCTCGTT+TGG - chr2.2:2060503-2060522 MS.gene36331:intron 45.0%
CAACAACAACATACACCCTC+CGG - chr2.2:2059043-2059062 MS.gene36331:CDS 45.0%
CCGAAGATAAGAATGGGACT+TGG - chr2.2:2060701-2060720 MS.gene36331:intron 45.0%
GAGTAGCTGTAGCAAGATGA+AGG + chr2.2:2058592-2058611 None:intergenic 45.0%
GCTGTCATAGCAGCTCTATT+TGG - chr2.2:2059932-2059951 MS.gene36331:CDS 45.0%
GCTTGCACCTTCACTTTGTT+TGG - chr2.2:2060847-2060866 MS.gene36331:intron 45.0%
GGCTGTATATCAGCAAAACC+AGG - chr2.2:2059743-2059762 MS.gene36331:CDS 45.0%
TGTGAAATTTCCAGCTGCAG+AGG + chr2.2:2058630-2058649 None:intergenic 45.0%
TTCTTCAGCACTCTCTGGAT+TGG - chr2.2:2060949-2060968 MS.gene36331:CDS 45.0%
! AATTCAGGTGAGGTTTTCGG+TGG + chr2.2:2060148-2060167 None:intergenic 45.0%
! ATTGGTCGATTCCTAGGTGT+TGG - chr2.2:2058683-2058702 MS.gene36331:CDS 45.0%
! GATATAAGCATGAGTGCTGC+TGG + chr2.2:2060007-2060026 None:intergenic 45.0%
! TAATGAGGCACTTGCTAGGA+TGG - chr2.2:2058514-2058533 MS.gene36331:CDS 45.0%
!! CGATTCCTAGGTGTTGGAAT+AGG - chr2.2:2058689-2058708 MS.gene36331:CDS 45.0%
!! TCAAACTTTGAAGTACCGGC+AGG - chr2.2:2060569-2060588 MS.gene36331:intron 45.0%
!!! ATCATTTTTTAATTTTAAAA+AGG + chr2.2:2059503-2059522 None:intergenic 5.0%
!!! TAATATTATATATTCATTTT+TGG - chr2.2:2058732-2058751 MS.gene36331:CDS 5.0%
ACTTGCAGCAATCCACCTGA+AGG - chr2.2:2059722-2059741 MS.gene36331:CDS 50.0%
AGACCACCCTTGCTTCTTTG+TGG + chr2.2:2058368-2058387 None:intergenic 50.0%
CAAGTGGAGGAAAAGATGGG+TGG - chr2.2:2061032-2061051 MS.gene36331:CDS 50.0%
CTTCTCATATCCTCTGCAGC+TGG - chr2.2:2058617-2058636 MS.gene36331:CDS 50.0%
CTTGCTAGGATGGCAAGTAC+TGG - chr2.2:2058524-2058543 MS.gene36331:CDS 50.0%
GCTGATATACAGCCTTCAGG+TGG + chr2.2:2059737-2059756 None:intergenic 50.0%
TGCAAAACCAGTGAGCAAGC+TGG + chr2.2:2060083-2060102 None:intergenic 50.0%
! CAAAGAACCAGCTTGCTCAC+TGG - chr2.2:2060073-2060092 MS.gene36331:intron 50.0%
! CAGCTAATGAGGCACTTGCT+AGG - chr2.2:2058510-2058529 MS.gene36331:CDS 50.0%
! GCACCTTCACTTTGTTTGGC+TGG - chr2.2:2060851-2060870 MS.gene36331:intron 50.0%
!! AGCACTCTCTGGATTGGCAA+TGG - chr2.2:2060955-2060974 MS.gene36331:CDS 50.0%
!! AGGATGGCAAGTACTGGACT+TGG - chr2.2:2058530-2058549 MS.gene36331:CDS 50.0%
!! TCAGGTGGATTGCTGCAAGT+AGG + chr2.2:2059722-2059741 None:intergenic 50.0%
AAGTAGGAGGCTGCGTAGCT+GGG + chr2.2:2059706-2059725 None:intergenic 55.0%
GCGATCCCTGTTGACCACAA+TGG + chr2.2:2060476-2060495 None:intergenic 55.0%
!! GGTGGATTGCTGCAAGTAGG+AGG + chr2.2:2059719-2059738 None:intergenic 55.0%
!! TCTGGATTGGCAATGGCTGC+CGG - chr2.2:2060962-2060981 MS.gene36331:CDS 55.0%
AGGCTGCGTAGCTGGGATCA+TGG + chr2.2:2059699-2059718 None:intergenic 60.0%
CAAGTAGGAGGCTGCGTAGC+TGG + chr2.2:2059707-2059726 None:intergenic 60.0%
GGCAATGGCTGCCGGAAACT+TGG - chr2.2:2060970-2060989 MS.gene36331:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 2058296 2061372 2058296 ID=MS.gene36331
chr2.2 mRNA 2058296 2061372 2058296 ID=MS.gene36331.t1;Parent=MS.gene36331
chr2.2 exon 2061258 2061372 2061258 ID=MS.gene36331.t1.exon1;Parent=MS.gene36331.t1
chr2.2 CDS 2061258 2061372 2061258 ID=cds.MS.gene36331.t1;Parent=MS.gene36331.t1
chr2.2 exon 2060938 2061155 2060938 ID=MS.gene36331.t1.exon2;Parent=MS.gene36331.t1
chr2.2 CDS 2060938 2061155 2060938 ID=cds.MS.gene36331.t1;Parent=MS.gene36331.t1
chr2.2 exon 2059450 2059997 2059450 ID=MS.gene36331.t1.exon3;Parent=MS.gene36331.t1
chr2.2 CDS 2059450 2059997 2059450 ID=cds.MS.gene36331.t1;Parent=MS.gene36331.t1
chr2.2 exon 2058296 2059325 2058296 ID=MS.gene36331.t1.exon4;Parent=MS.gene36331.t1
chr2.2 CDS 2058296 2059325 2058296 ID=cds.MS.gene36331.t1;Parent=MS.gene36331.t1
Gene Sequence

>MS.gene36331

ATGGATAAGGAACTTCAACTTTGTTCAGTTGATGCTGCTGATGAAGAAGAAATGGTTTCTCAACAAAAACCACAAAGAAGCAAGGGTGGTCTTGTCACCATGCCTTTTATCATTGGTATCTTATCTATAACTTGCATGCATTTTTATTTTACTTTATTTTTACTTTGAATGAGGTTGAATTTTGATGTATAATATTAATATGATTTTGTTGTTGCAGCTAATGAGGCACTTGCTAGGATGGCAAGTACTGGACTTGGACCCAACATGATATTGTATTTGATGGGATCTTACAACCTTCATCTTGCTACAGCTACTCAGATACTTCTCATATCCTCTGCAGCTGGAAATTTCACACCTGTTGTTGCTGCTTTTATTGCAGATTCTTATATTGGTCGATTCCTAGGTGTTGGAATAGGTTCTATTATCAGTTTCCTGGTAATATTATATATTCATTTTTGGTTTACTTCCTTTTTTTTCATTTCCATGATACTTTTCTTATCTTTTGACTTGAATATGCATATTATTAAGTCCAATTATGGGAGTAAATTGTATTTGAATTAATCACATACATAGAAGACATGCTCAATATAAATATTACTCCCTCTCTTATAAAGGAACAGAGGGAGTACACTTTAATCATACTTCAATGCAGAAGGAAAATAAAAAGATAAGCATATATGTATAACCTTTTTTTTTTTTTGAAAGAAGCATATATGTATAACCTGGATCTACAATAATATTTGTAATCAACAACAACATACACCCTCCGGTCATTATTATAAGCAAAAAAATCACATTTGAGATTCATTCAATTAATGATGTATATAGTCTTTATTATAGACCGCATACACCATTTAATGAATGAACCTAGAATGTTGATTTTTGCTTATAATAGTGACCGGAGGGTGTACAACATATTGATTAATTAAAGATATATTAGGAACACTTGAATTGAATCTATGGCTAAAGTCTGTGGGCGACAATGATCTGAAACATAAAGAGAGACGGATAATGTCATAACGAATGCCCCTTGATTTGTGATTCTTTCTCAACTAGGACTCCATATGTCTTAGGCAAGACAACACGCAGTGTGTCTGATATATTGAAGATCATTGTCTACATATATTGAACCCATATCAATTAAATATTCGAGTAGTTAAATAAAATATTCAACTATGATATTCTGATTAATTCTCCTCAGATTCCTTTTTAAAATTAAAAAATGATATATTCACTTGTATGAAAAAGAATCATATAAAGGAAAAAAGTTCCACCAAACTTGGTACGTATATTCAATTAATATTCTGAAATTATAGGTATAATGAAAAAAGTTGGTAACGATCCTTCTTTTTTGTTTGTTTGTTTGTTGTTATAGGGAATGTCAATGCTGTGGTTAACAGCCATGATCCCAGCTACGCAGCCTCCTACTTGCAGCAATCCACCTGAAGGCTGTATATCAGCAAAACCAGGTCAAATGGCAATGTTACTCTCTGCGTTAATTCTGATAGGAATTGGAAATGGTGGTATTTCATGTTCTTTAGCTTTTGGTGCAGACCAAGTTAAAAGAAAAGAAAATTCCAATAACAATAGAGCTTTGGAAATATTCTTCACTTGGTATTATGCTTCCACAACTATAGCTGTCATAGCAGCTCTATTTGGAATAGTATATATCCAAGATCATCTTGGTTGGAAAATTGGTTTTGGTGTTCCAGCAGCACTCATGCTTATATCCACTGTCTTATTCTTTCTTGCTTCTCCTCTTTATGTGAAAATTACACAAAGAACCAGCTTGCTCACTGGTTTTGCACAAGTATCTGTTGCTGCCTATAAAAACAGAAAACTTTCATTGCCACCGAAAACCTCACCTGAATTTTACCATCATAAAAAAGACTCAGATCTTCTTGTTCCAACTGATAGACTAAGGTATACCATCTTTATAGCTTTTGCATATTTTATACATACAGATTAAATCAGTTGTGTTATTTGAACAAAAATTCAGGTCGTACAAAAATCATTTCCCATATTAAACGTTTGATTTCATTTTCAGGTTTCTAAATAAAGCTTGTGTTATTAAGGATCACGAACAAGATATAGCCTCAGATGGTTCAACAATAAATCGTTGGAGTCTCTGCACAGTAGATCAAGTTGAAGAACTAAAAGCCATTATTAAAGTTATTCCATTGTGGTCAACAGGGATCGCAATGTCAATTAACATCGGAGGCTCGTTTGGATTGCTGCAAGCTAAATCCTTAGACAGACATATCATTTCAAGTTCAAACTTTGAAGTACCGGCAGGATCTTTTACTATAATCCTTATCTTTGTAATACTTATATGGATAGTTATCTATGATCGTGTTCTTATTCCTTTAGCATCAAAGATAAGAGGGAAACCAGTGAGTATCAGTCCGAAGATAAGAATGGGACTTGGGTTGTTTTTTAATTTTCTTCACTTGGTAGTTGCAGCAATTTTTGAGAGTATAAGGAGAAAGAAAGCAATTCAGGCAGGATTTTTGAATAATACTCATGGAGTGTTGAAAATGTCTGCAATGTGGCTTGCACCTTCACTTTGTTTGGCTGGTATAGCTGAAGCATTCAATGTTATTGGCCAAAATGAGTTTTATTACAAAGAGTTTCCAAAGACTATGTCTAGTGTTTCTTCAGCACTCTCTGGATTGGCAATGGCTGCCGGAAACTTGGTGTCTTCTTTTGTATTCAGCACTATTGAAAACACTACTTCAAGTGGAGGAAAAGATGGGTGGATTTCTGATAATATTAACAAGGGTCATTTCGACAAATATTTATGGGTTATAGCTGGAATTAATGTTCTTAATCTACTGTATTATTTAGTATGCAGTTGGGCTTATGGACCTACAGCTGATCAAGTATCCAAAGTGAGTGAAGAAAATGGTTCCAAGGAGGAAAATTCAACTGAATTCAAAAATGTCAATCCACAAATTGATGACAAGGTTAGTGATGAAACTAGTTCAAAGGAGAAAGAGTTAACTGAATTCAAGAATGGTGGTCAGGTTGAGAAAGTATTCAAGATTAGTGAAGAAAATGGCTTGAAGGAGGAATAG

Protein sequence

>MS.gene36331.t1

MDKELQLCSVDAADEEEMVSQQKPQRSKGGLVTMPFIIANEALARMASTGLGPNMILYLMGSYNLHLATATQILLISSAAGNFTPVVAAFIADSYIGRFLGVGIGSIISFLGMSMLWLTAMIPATQPPTCSNPPEGCISAKPGQMAMLLSALILIGIGNGGISCSLAFGADQVKRKENSNNNRALEIFFTWYYASTTIAVIAALFGIVYIQDHLGWKIGFGVPAALMLISTVLFFLASPLYVKITQRTSLLTGFAQVSVAAYKNRKLSLPPKTSPEFYHHKKDSDLLVPTDRLRFLNKACVIKDHEQDIASDGSTINRWSLCTVDQVEELKAIIKVIPLWSTGIAMSINIGGSFGLLQAKSLDRHIISSSNFEVPAGSFTIILIFVILIWIVIYDRVLIPLASKIRGKPVSISPKIRMGLGLFFNFLHLVVAAIFESIRRKKAIQAGFLNNTHGVLKMSAMWLAPSLCLAGIAEAFNVIGQNEFYYKEFPKTMSSVSSALSGLAMAAGNLVSSFVFSTIENTTSSGGKDGWISDNINKGHFDKYLWVIAGINVLNLLYYLVCSWAYGPTADQVSKVSEENGSKEENSTEFKNVNPQIDDKVSDETSSKEKELTEFKNGGQVEKVFKISEENGLKEE