AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015450.t1 MTR_5g012270 95.883 583 22 1 1 581 1 583 0.0 1150
MS.gene015450.t1 MTR_5g012290 75.862 580 138 2 1 579 1 579 0.0 904
MS.gene015450.t1 MTR_4g101380 70.962 582 166 2 1 579 1 582 0.0 836
MS.gene015450.t1 MTR_4g114340 52.014 571 248 7 12 573 9 562 0.0 539
MS.gene015450.t1 MTR_5g085850 48.214 560 265 6 15 570 18 556 2.17e-176 512
MS.gene015450.t1 MTR_4g015080 43.525 556 304 6 17 570 24 571 3.52e-156 460
MS.gene015450.t1 MTR_7g067010 42.933 566 309 8 7 570 8 561 1.64e-153 452
MS.gene015450.t1 MTR_5g055000 41.472 557 319 5 25 578 16 568 5.34e-151 447
MS.gene015450.t1 MTR_3g462710 43.907 558 301 8 17 570 14 563 1.16e-150 445
MS.gene015450.t1 MTR_7g098200 41.459 562 310 6 17 571 19 568 2.94e-146 435
MS.gene015450.t1 MTR_7g088825 38.869 566 333 5 23 581 18 577 6.22e-144 429
MS.gene015450.t1 MTR_3g112460 39.895 569 320 7 17 581 13 563 2.46e-143 427
MS.gene015450.t1 MTR_7g098200 41.459 562 300 8 17 571 19 558 3.49e-142 424
MS.gene015450.t1 MTR_3g112470 39.330 567 326 8 17 581 13 563 6.43e-139 415
MS.gene015450.t1 MTR_7g098040 39.649 570 323 7 7 570 18 572 1.35e-137 414
MS.gene015450.t1 MTR_7g098160 39.895 569 323 6 7 570 17 571 2.19e-136 410
MS.gene015450.t1 MTR_1g075440 38.261 575 336 6 6 570 1 566 1.05e-135 408
MS.gene015450.t1 MTR_1g041835 40.103 581 324 8 7 577 11 577 1.75e-135 407
MS.gene015450.t1 MTR_7g098230 39.411 543 314 5 34 571 33 565 2.87e-135 407
MS.gene015450.t1 MTR_3g112450 38.995 577 322 10 14 581 10 565 6.81e-134 402
MS.gene015450.t1 MTR_7g098180 37.866 581 345 5 5 579 9 579 1.29e-133 403
MS.gene015450.t1 MTR_7g088790 39.455 550 321 4 27 570 29 572 2.09e-133 402
MS.gene015450.t1 MTR_7g098090 39.724 579 315 8 7 570 17 576 2.28e-132 400
MS.gene015450.t1 MTR_7g098220 39.161 572 329 6 7 573 14 571 7.50e-132 398
MS.gene015450.t1 MTR_1g041815 38.870 584 334 8 7 581 11 580 8.39e-131 395
MS.gene015450.t1 MTR_7g010820 40.248 564 317 8 17 569 16 570 2.65e-130 394
MS.gene015450.t1 MTR_4g019580 37.433 561 333 8 15 571 24 570 4.14e-129 391
MS.gene015450.t1 MTR_5g014150 38.028 568 339 8 7 567 24 585 2.50e-128 389
MS.gene015450.t1 MTR_4g098800 38.732 568 330 9 7 567 16 572 3.77e-128 388
MS.gene015450.t1 MTR_7g065080 38.011 563 326 8 17 575 21 564 4.25e-128 388
MS.gene015450.t1 MTR_2g005130 38.302 577 324 11 9 578 22 573 7.28e-128 387
MS.gene015450.t1 MTR_5g038060 38.584 565 326 7 25 577 29 584 7.36e-128 388
MS.gene015450.t1 MTR_4g098800 38.732 568 330 9 7 567 81 637 2.45e-127 388
MS.gene015450.t1 MTR_3g069500 39.347 582 319 12 8 580 15 571 1.30e-126 384
MS.gene015450.t1 MTR_1g042310 36.130 584 351 8 7 581 10 580 6.05e-125 380
MS.gene015450.t1 MTR_3g069420 36.667 570 342 11 7 570 13 569 1.29e-124 379
MS.gene015450.t1 MTR_7g088820 34.991 563 359 5 17 576 17 575 1.73e-124 379
MS.gene015450.t1 MTR_7g005930 38.241 557 319 10 19 567 27 566 7.11e-124 377
MS.gene015450.t1 MTR_3g072300 37.925 559 335 8 17 572 14 563 1.40e-123 376
MS.gene015450.t1 MTR_7g013270 37.303 571 333 10 6 567 69 623 5.50e-123 377
MS.gene015450.t1 MTR_1g041875 35.889 574 343 7 17 581 19 576 9.34e-123 374
MS.gene015450.t1 MTR_7g098220 38.734 537 314 5 42 573 1 527 1.01e-122 373
MS.gene015450.t1 MTR_3g069440 39.085 568 325 10 17 577 23 576 1.24e-122 374
MS.gene015450.t1 MTR_3g462710 45.414 447 233 7 128 570 15 454 2.19e-122 369
MS.gene015450.t1 MTR_4g033325 37.565 575 326 7 8 578 12 557 4.80e-122 371
MS.gene015450.t1 MTR_3g100980 37.279 566 329 10 22 577 11 560 5.92e-121 369
MS.gene015450.t1 MTR_4g107670 37.979 574 322 10 17 571 14 572 1.74e-120 368
MS.gene015450.t1 MTR_0294s0020 37.037 567 322 8 17 578 21 557 2.03e-120 367
MS.gene015450.t1 MTR_4g033315 36.870 575 332 6 8 578 12 559 6.31e-120 366
MS.gene015450.t1 MTR_4g033310 36.870 575 332 6 8 578 12 559 6.31e-120 366
MS.gene015450.t1 MTR_1g116930 37.568 551 323 8 23 567 19 554 2.55e-119 365
MS.gene015450.t1 MTR_8g087810 37.649 587 347 10 8 579 2 584 4.99e-119 365
MS.gene015450.t1 MTR_8g087780 37.158 584 353 8 8 579 2 583 3.69e-118 362
MS.gene015450.t1 MTR_8g038880 38.313 569 314 8 26 580 19 564 9.10e-118 361
MS.gene015450.t1 MTR_2g017750 37.262 577 345 10 17 578 24 598 1.09e-117 362
MS.gene015450.t1 MTR_8g469480 36.709 553 329 7 30 570 41 584 1.64e-117 361
MS.gene015450.t1 MTR_1g042310 35.649 547 334 7 44 581 6 543 2.52e-116 357
MS.gene015450.t1 MTR_3g005010 36.907 569 313 9 10 570 13 543 8.81e-116 355
MS.gene015450.t1 MTR_8g469310 38.287 572 319 8 17 570 16 571 1.50e-115 355
MS.gene015450.t1 MTR_1g042310 35.675 541 330 7 50 581 5 536 4.58e-115 353
MS.gene015450.t1 MTR_7g088820 35.225 511 326 4 69 576 5 513 6.18e-115 352
MS.gene015450.t1 MTR_3g100980 35.462 595 330 11 22 578 11 589 8.68e-115 354
MS.gene015450.t1 MTR_7g065080 38.462 494 281 8 86 575 3 477 2.54e-114 349
MS.gene015450.t1 MTR_4g107530 35.778 559 334 10 30 573 36 584 2.84e-114 353
MS.gene015450.t1 MTR_7g098200 40.343 466 259 6 113 571 1 454 3.09e-114 349
MS.gene015450.t1 MTR_1g041885 36.417 508 303 6 50 553 5 496 3.00e-113 348
MS.gene015450.t1 MTR_7g006540 35.211 568 340 9 26 576 62 618 7.31e-113 350
MS.gene015450.t1 MTR_5g038380 36.552 580 333 8 17 577 18 581 9.08e-113 348
MS.gene015450.t1 MTR_4g033375 37.992 508 285 6 11 515 16 496 3.26e-111 342
MS.gene015450.t1 MTR_4g033330 37.681 552 307 9 8 552 12 533 1.40e-110 341
MS.gene015450.t1 MTR_3g014790 36.042 566 333 8 24 581 14 558 2.03e-110 342
MS.gene015450.t1 MTR_4g107510 35.209 551 344 7 30 571 39 585 1.54e-109 340
MS.gene015450.t1 MTR_1g085090 36.136 559 321 14 25 573 17 549 2.55e-109 340
MS.gene015450.t1 MTR_4g107580 33.868 561 358 8 30 580 27 584 7.35e-109 339
MS.gene015450.t1 MTR_7g088820 36.247 469 294 4 116 581 4 470 4.71e-108 333
MS.gene015450.t1 MTR_7g111260 36.283 565 326 13 25 580 17 556 6.47e-108 336
MS.gene015450.t1 MTR_4g033395 37.328 509 291 6 11 517 16 498 2.01e-105 327
MS.gene015450.t1 MTR_7g098150 39.955 448 253 4 7 451 17 451 1.38e-104 324
MS.gene015450.t1 MTR_8g469470 34.103 563 349 8 22 570 27 581 6.27e-104 325
MS.gene015450.t1 MTR_4g123537 34.495 574 344 11 7 571 21 571 8.65e-101 318
MS.gene015450.t1 MTR_5g038190 32.692 572 368 7 8 570 5 568 1.19e-100 317
MS.gene015450.t1 MTR_2g101650 31.041 567 364 10 24 577 21 573 2.01e-98 311
MS.gene015450.t1 MTR_4g033325 36.943 471 264 7 112 578 18 459 1.38e-97 305
MS.gene015450.t1 MTR_8g103233 34.116 554 340 9 24 567 15 553 2.26e-96 306
MS.gene015450.t1 MTR_4g033325 37.194 449 257 6 134 578 6 433 3.18e-95 298
MS.gene015450.t1 MTR_2g101640 31.459 569 360 10 25 577 21 575 2.09e-93 299
MS.gene015450.t1 MTR_4g033385 35.524 487 280 8 96 578 4 460 2.23e-93 294
MS.gene015450.t1 MTR_4g011280 31.598 557 342 11 29 567 34 569 2.74e-93 298
MS.gene015450.t1 MTR_2g101590 31.826 553 356 11 25 567 24 565 9.17e-92 295
MS.gene015450.t1 MTR_2g101610 31.769 554 356 12 24 567 25 566 1.37e-89 290
MS.gene015450.t1 MTR_1g026740 30.952 546 359 11 29 567 19 553 4.65e-89 286
MS.gene015450.t1 MTR_7g064780 31.250 560 364 11 23 571 22 571 2.53e-87 282
MS.gene015450.t1 MTR_4g107610 31.317 562 368 8 23 576 27 578 1.34e-85 278
MS.gene015450.t1 MTR_2g093180 32.796 558 335 11 26 571 20 549 1.04e-84 274
MS.gene015450.t1 MTR_2g093640 32.374 556 339 10 26 571 20 548 5.50e-84 272
MS.gene015450.t1 MTR_1g026750 31.760 551 356 12 25 567 16 554 1.02e-83 272
MS.gene015450.t1 MTR_4g024930 32.168 572 342 13 5 567 18 552 6.36e-83 270
MS.gene015450.t1 MTR_2g093160 31.949 554 344 9 26 571 20 548 9.13e-83 269
MS.gene015450.t1 MTR_2g101560 31.889 577 354 16 24 580 25 582 1.87e-82 271
MS.gene015450.t1 MTR_7g064800 30.619 565 376 9 14 568 12 570 2.48e-82 269
MS.gene015450.t1 MTR_1g026770 30.713 547 358 11 29 567 17 550 2.82e-82 268
MS.gene015450.t1 MTR_1g057460 31.139 562 330 15 24 567 42 564 2.69e-80 263
MS.gene015450.t1 MTR_1g009200 29.799 547 361 7 25 561 25 558 8.39e-78 257
MS.gene015450.t1 MTR_7g098210 31.520 533 268 11 46 571 1 443 7.00e-76 248
MS.gene015450.t1 MTR_1g057460 30.885 531 311 14 55 567 1 493 7.14e-75 247
MS.gene015450.t1 MTR_6g008690 32.065 552 317 12 43 572 23 538 1.98e-74 247
MS.gene015450.t1 MTR_0236s0050 32.392 531 303 16 55 567 1 493 2.22e-73 243
MS.gene015450.t1 MTR_7g051880 31.957 557 334 12 14 567 11 525 3.03e-71 238
MS.gene015450.t1 MTR_7g052600 32.504 563 335 13 8 567 5 525 1.15e-70 236
MS.gene015450.t1 MTR_7g051830 31.851 562 338 12 9 567 6 525 4.98e-66 224
MS.gene015450.t1 MTR_4g033310 37.895 285 168 2 296 578 218 495 1.89e-61 211
MS.gene015450.t1 MTR_4g033310 39.785 186 102 2 8 193 12 187 2.41e-32 130
MS.gene015450.t1 MTR_1g009170 26.733 404 233 9 153 549 9 356 9.18e-36 138
MS.gene015450.t1 MTR_3g065350 39.752 161 89 4 339 499 1 153 1.85e-25 103
MS.gene015450.t1 MTR_2g093650 26.702 191 83 4 358 548 45 178 1.28e-13 70.9
MS.gene015450.t1 MTR_4g033390 34.409 93 59 1 487 577 30 122 5.27e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015450.t1 AT1G12110 60.481 582 220 6 3 579 2 578 0.0 693
MS.gene015450.t1 AT2G26690 52.595 578 250 9 12 580 9 571 0.0 573
MS.gene015450.t1 AT2G26690 52.087 551 240 9 39 580 3 538 0.0 538
MS.gene015450.t1 AT2G26690 51.756 541 237 9 49 580 1 526 0.0 525
MS.gene015450.t1 AT3G21670 48.759 564 261 7 14 570 16 558 2.56e-178 517
MS.gene015450.t1 AT5G01180 43.447 557 304 6 17 570 15 563 9.78e-164 479
MS.gene015450.t1 AT5G01180 43.447 557 304 6 17 570 15 563 9.78e-164 479
MS.gene015450.t1 AT5G01180 43.447 557 304 6 17 570 15 563 9.78e-164 479
MS.gene015450.t1 AT3G54140 42.328 567 313 7 7 570 8 563 7.79e-158 464
MS.gene015450.t1 AT3G54140 42.328 567 313 7 7 570 8 563 7.79e-158 464
MS.gene015450.t1 AT2G02040 41.281 562 319 8 17 575 31 584 5.96e-145 431
MS.gene015450.t1 AT1G68570 41.638 574 323 7 7 574 5 572 3.62e-140 419
MS.gene015450.t1 AT1G68570 42.435 542 302 5 39 574 5 542 1.71e-137 411
MS.gene015450.t1 AT1G59740 38.502 574 334 6 14 581 28 588 3.72e-136 409
MS.gene015450.t1 AT5G46050 39.324 562 319 5 17 570 17 564 4.85e-136 408
MS.gene015450.t1 AT1G62200 39.820 555 315 8 17 565 42 583 7.12e-134 403
MS.gene015450.t1 AT1G62200 38.660 582 313 10 17 565 56 626 2.81e-130 395
MS.gene015450.t1 AT1G62200 38.660 582 313 10 17 565 42 612 3.09e-130 395
MS.gene015450.t1 AT5G46040 38.681 561 324 7 17 570 17 564 1.64e-129 392
MS.gene015450.t1 AT1G33440 38.927 578 318 10 2 567 13 567 4.03e-126 384
MS.gene015450.t1 AT2G02020 37.912 546 295 7 17 561 32 534 8.08e-125 378
MS.gene015450.t1 AT2G40460 39.341 577 328 8 7 580 8 565 5.72e-124 377
MS.gene015450.t1 AT4G21680 39.860 572 324 8 7 569 12 572 4.48e-123 375
MS.gene015450.t1 AT1G32450 36.713 572 348 8 17 581 27 591 2.44e-122 374
MS.gene015450.t1 AT3G53960 37.258 569 338 9 8 570 18 573 2.59e-122 374
MS.gene015450.t1 AT2G37900 35.614 570 338 9 8 570 19 566 2.33e-120 368
MS.gene015450.t1 AT3G54450 36.201 558 334 5 17 570 3 542 4.16e-120 366
MS.gene015450.t1 AT1G69870 37.050 556 330 8 25 570 49 594 1.34e-119 367
MS.gene015450.t1 AT1G72140 36.535 583 315 9 6 573 13 555 5.08e-115 353
MS.gene015450.t1 AT5G13400 35.501 569 343 8 23 577 60 618 8.46e-114 352
MS.gene015450.t1 AT5G19640 36.542 561 324 11 28 580 60 596 1.14e-113 352
MS.gene015450.t1 AT1G22540 39.356 559 308 8 17 570 20 552 5.66e-110 340
MS.gene015450.t1 AT1G27040 37.143 560 329 7 17 569 13 556 2.48e-109 339
MS.gene015450.t1 AT1G27040 37.143 560 329 7 17 569 17 560 2.88e-109 339
MS.gene015450.t1 AT5G46050 39.655 464 258 5 115 570 3 452 6.53e-109 335
MS.gene015450.t1 AT1G22570 37.193 570 329 9 9 570 12 560 1.26e-108 337
MS.gene015450.t1 AT1G69850 37.024 578 329 12 17 571 15 580 3.53e-108 337
MS.gene015450.t1 AT2G37900 35.882 510 298 9 74 576 6 493 5.36e-108 333
MS.gene015450.t1 AT1G22550 35.626 567 335 8 12 570 15 559 4.95e-107 333
MS.gene015450.t1 AT1G27040 37.313 536 313 7 41 569 9 528 1.03e-104 326
MS.gene015450.t1 AT2G02020 34.982 546 290 8 17 561 32 513 1.66e-104 325
MS.gene015450.t1 AT1G72120 34.974 569 338 8 8 570 10 552 2.33e-104 326
MS.gene015450.t1 AT1G72125 33.798 574 350 7 8 574 10 560 4.27e-104 325
MS.gene015450.t1 AT1G72130 36.767 563 300 12 19 570 16 533 1.10e-101 318
MS.gene015450.t1 AT3G25260 35.262 553 308 10 17 567 11 515 7.82e-100 313
MS.gene015450.t1 AT5G62730 34.386 570 334 11 17 573 46 588 9.97e-100 315
MS.gene015450.t1 AT1G18880 32.857 560 360 7 30 579 22 575 1.97e-99 314
MS.gene015450.t1 AT3G47960 33.925 563 352 10 21 570 53 608 7.31e-99 314
MS.gene015450.t1 AT5G62680 32.428 552 357 8 30 570 46 592 3.70e-98 311
MS.gene015450.t1 AT1G22570 36.599 541 314 9 38 570 4 523 4.76e-97 306
MS.gene015450.t1 AT5G62730 34.296 554 324 11 33 573 3 529 2.17e-96 304
MS.gene015450.t1 AT1G27080 34.336 565 338 10 25 577 12 555 8.59e-96 304
MS.gene015450.t1 AT3G25280 34.720 553 317 13 17 567 11 521 6.45e-93 295
MS.gene015450.t1 AT3G16180 31.643 572 363 12 13 567 5 565 4.89e-91 292
MS.gene015450.t1 AT1G52190 30.404 569 375 10 13 567 5 566 9.05e-91 292
MS.gene015450.t1 AT1G27080 34.211 532 317 10 58 577 3 513 5.60e-85 275
MS.gene015450.t1 AT3G45710 29.338 559 359 10 22 573 18 547 6.71e-84 273
MS.gene015450.t1 AT3G45660 30.634 568 364 11 14 577 8 549 1.00e-83 272
MS.gene015450.t1 AT3G45660 30.634 568 364 11 14 577 8 549 1.00e-83 272
MS.gene015450.t1 AT3G45660 30.634 568 364 11 14 577 29 570 1.78e-83 272
MS.gene015450.t1 AT5G14940 31.927 545 322 11 43 567 23 538 3.80e-81 265
MS.gene015450.t1 AT3G45650 29.369 555 362 9 23 573 18 546 4.29e-80 262
MS.gene015450.t1 AT1G72130 36.508 441 234 9 139 569 10 414 7.62e-80 258
MS.gene015450.t1 AT1G72130 36.508 441 234 9 139 569 10 414 7.62e-80 258
MS.gene015450.t1 AT3G45680 30.179 560 354 11 26 577 19 549 1.15e-79 261
MS.gene015450.t1 AT3G45700 28.571 553 358 9 26 573 15 535 8.75e-77 253
MS.gene015450.t1 AT5G28470 28.623 559 375 10 25 573 15 559 9.89e-77 254
MS.gene015450.t1 AT3G45720 28.472 576 370 11 1 570 1 540 3.18e-76 252
MS.gene015450.t1 AT3G45650 28.055 581 362 10 23 573 18 572 4.82e-75 250
MS.gene015450.t1 AT3G01350 31.349 571 339 12 24 567 4 548 5.62e-75 249
MS.gene015450.t1 AT5G28470 28.801 559 372 12 25 573 15 557 6.25e-75 249
MS.gene015450.t1 AT1G69860 28.495 558 369 8 23 571 14 550 2.01e-72 242
MS.gene015450.t1 AT3G45690 29.242 554 314 16 26 571 17 500 1.26e-66 226
MS.gene015450.t1 AT5G11570 26.443 537 306 10 37 567 23 476 1.26e-48 176
MS.gene015450.t1 AT2G38100 29.245 530 323 17 55 573 2 490 2.97e-46 170
MS.gene015450.t1 AT2G38100 29.245 530 323 17 55 573 18 506 5.33e-46 170
MS.gene015450.t1 AT2G38100 29.245 530 323 17 55 573 24 512 5.65e-46 170

Find 140 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTGTTCGGTGGCTTTCT+AGG 0.219772 5.4:-6358619 MS.gene015450:CDS
TCGATGACATCCTTCTTAAT+TGG 0.224118 5.4:-6356983 MS.gene015450:CDS
TTATGATTATTACTGGCTTT+TGG 0.247074 5.4:-6356498 MS.gene015450:CDS
ATCAACCAGAAAACACTTAA+TGG 0.249004 5.4:+6356746 None:intergenic
AGGAGAGTCCTTTATGTATA+TGG 0.250618 5.4:-6356699 MS.gene015450:CDS
ATTCTTGAGCTCAAGATCTT+TGG 0.255372 5.4:-6356615 MS.gene015450:CDS
CTAATGACACGGTCATAAAA+AGG 0.258608 5.4:+6356941 None:intergenic
GGAGGCTTTATGATTATTAC+TGG 0.269804 5.4:-6356505 MS.gene015450:CDS
ACTTCAGCTTCCATGATATT+AGG 0.285256 5.4:-6358863 MS.gene015450:intron
TTTAACAGGTACAATGCATT+TGG 0.293906 5.4:-6358698 MS.gene015450:CDS
ACTAGGCATAACCGTGAATT+TGG 0.307350 5.4:-6358728 MS.gene015450:CDS
AATTTGGTCACATATTTAAC+AGG 0.308170 5.4:-6358712 MS.gene015450:CDS
AGTTCTTTCAATCTTATCTA+TGG 0.319020 5.4:-6356849 MS.gene015450:CDS
TTCTTGAGCTCAAGATCTTT+GGG 0.322864 5.4:-6356614 MS.gene015450:CDS
AAATCCAGTGTCCCTGGCTT+TGG 0.323797 5.4:-6357782 MS.gene015450:CDS
GGGCATCAACCATCGTGTTT+TGG 0.330504 5.4:-6357096 MS.gene015450:CDS
TCATTTATGCTTTGTTTGTT+CGG 0.333514 5.4:-6358631 MS.gene015450:CDS
CAGGGTAGAGATTGGGGTTA+TGG 0.343473 5.4:-6357629 MS.gene015450:CDS
CACGATGGTTGATGCCCATA+TGG 0.348505 5.4:+6357102 None:intergenic
CACTTCTTCTACATCGGTTA+AGG 0.362617 5.4:+6357147 None:intergenic
CGATGTAGAAGAAGTGAAAT+TGG 0.367647 5.4:-6357140 MS.gene015450:CDS
ATATGGTTAAATTTCTCAAT+TGG 0.370598 5.4:-6357718 MS.gene015450:CDS
AACACTTTCATAGTCCTTGA+TGG 0.371357 5.4:+6357207 None:intergenic
TCTGCAATCCATGGTTTACT+TGG 0.374332 5.4:+6356542 None:intergenic
CAACTCCAGTATGCTGTAAA+GGG 0.380330 5.4:+6356876 None:intergenic
ATTTGCACAATCACATGGTT+TGG 0.380470 5.4:-6356792 MS.gene015450:CDS
GGTATCACAGGCAACAACTA+TGG 0.391203 5.4:-6357044 MS.gene015450:CDS
CCCTGATGCCTATGACTGTA+AGG 0.397338 5.4:-6358921 MS.gene015450:CDS
TTAAGCACTTTCCTTGCAAC+TGG 0.398521 5.4:+6356917 None:intergenic
TGTTTACATACAAGATCATC+AGG 0.401362 5.4:-6357648 MS.gene015450:CDS
AGCAAACAATAAACAGTTAA+CGG 0.401423 5.4:-6357852 MS.gene015450:CDS
CTTACCCCTTTACAGCATAC+TGG 0.401457 5.4:-6356881 MS.gene015450:CDS
TGCTAAGAATGCTCCCCATA+TGG 0.401978 5.4:-6357117 MS.gene015450:CDS
TACCACACAGCAAACAGTTT+CGG 0.411818 5.4:-6357388 MS.gene015450:intron
AGATCATCAGGGTAGAGATT+GGG 0.416744 5.4:-6357636 MS.gene015450:CDS
TCCACAGTGAATAAAATAAC+AGG 0.418647 5.4:-6356566 MS.gene015450:CDS
TATGTCACTGCACTTGGCAC+AGG 0.420682 5.4:-6357812 MS.gene015450:CDS
CCAACTCCAGTATGCTGTAA+AGG 0.422699 5.4:+6356875 None:intergenic
TATAAATTTGATGATATACT+TGG 0.422701 5.4:-6356462 MS.gene015450:CDS
TCAACCAGAAAACACTTAAT+GGG 0.427591 5.4:+6356747 None:intergenic
TCAGATTGCGGTTGTGTTTG+TGG 0.431939 5.4:-6357513 MS.gene015450:CDS
TGGAAAACCCTTACAGTCAT+AGG 0.432523 5.4:+6358913 None:intergenic
TGTAAACCTAGGATCTCTTA+TGG 0.433577 5.4:-6357684 MS.gene015450:CDS
CCTTGCATGTTGGAGGACTT+AGG 0.434447 5.4:+6357894 None:intergenic
CCCTTACAGTCATAGGCATC+AGG 0.435507 5.4:+6358920 None:intergenic
TTAACAGGTACAATGCATTT+GGG 0.437090 5.4:-6358697 MS.gene015450:CDS
CCAGCAGAAAGATCTAAAAC+TGG 0.438694 5.4:-6358893 MS.gene015450:CDS
AAGGATGTCATCGATGCTGC+TGG 0.454794 5.4:+6356992 None:intergenic
AAGATCATCAGGGTAGAGAT+TGG 0.456867 5.4:-6357637 MS.gene015450:CDS
CAATTTCACTTCTTCTACAT+CGG 0.458029 5.4:+6357141 None:intergenic
AACCTCTGCTTCTTGATCCT+CGG 0.458174 5.4:+6357410 None:intergenic
CATGTTGGAGGACTTAGGCT+TGG 0.462061 5.4:+6357899 None:intergenic
GCGCTTTATGTCACTGCACT+TGG 0.467474 5.4:-6357818 MS.gene015450:CDS
AACAAAATTTGTAACTATGT+TGG 0.470158 5.4:+6358660 None:intergenic
TAAATATGTGACCAAATTCA+CGG 0.470251 5.4:+6358717 None:intergenic
ATTCCTTACTGTTGCTTGAA+CGG 0.473367 5.4:+6358359 None:intergenic
CGGTTGTGTTTGTGGCTGCT+TGG 0.474990 5.4:-6357505 MS.gene015450:CDS
CCTTTACAGCATACTGGAGT+TGG 0.477525 5.4:-6356875 MS.gene015450:CDS
TAGTTGTCCCATATACATAA+AGG 0.480422 5.4:+6356691 None:intergenic
GAGAATAGTTCCAATTAAGA+AGG 0.481152 5.4:+6356973 None:intergenic
GGAGAGTCCTTTATGTATAT+GGG 0.481210 5.4:-6356698 MS.gene015450:CDS
GTATGTTCCTTGCATGTTGG+AGG 0.481231 5.4:+6357887 None:intergenic
TAAGTATCGTTACAAGAAAC+CGG 0.486697 5.4:-6357552 MS.gene015450:CDS
ATGTCACTGCACTTGGCACA+GGG 0.486739 5.4:-6357811 MS.gene015450:CDS
CAGGAGGAGAAGTGATGGAA+AGG 0.487583 5.4:-6358759 MS.gene015450:CDS
AATTGATCTGAACCAAAGCC+AGG 0.490669 5.4:+6357770 None:intergenic
ATTTGTGAGACCTAATATCA+TGG 0.491709 5.4:+6358853 None:intergenic
TAAAGAAGAGAAGAAACATA+TGG 0.498104 5.4:-6357735 MS.gene015450:CDS
TGAACCAAAGCCAGGGACAC+TGG 0.499870 5.4:+6357778 None:intergenic
ACGATGGTTGATGCCCATAT+GGG 0.500071 5.4:+6357103 None:intergenic
GTCACTGCACTTGGCACAGG+GGG 0.504363 5.4:-6357809 MS.gene015450:CDS
TAGGCGACACTTACATTGGA+AGG 0.509164 5.4:-6358600 MS.gene015450:intron
CTTAATGGGATCTTTGCCGT+TGG 0.512854 5.4:+6356761 None:intergenic
TTTGGACAAAGCGGCCATCA+AGG 0.514200 5.4:-6357221 MS.gene015450:CDS
TTGTGGCTGCTTGGAGGAAG+AGG 0.517836 5.4:-6357496 MS.gene015450:CDS
AAGGACTATGAAAGTGTTGG+TGG 0.519137 5.4:-6357202 MS.gene015450:CDS
GGTTTAAAATCCAGTGTCCC+TGG 0.528879 5.4:-6357788 MS.gene015450:CDS
GAAGGTTGCTGAGGAAGGCA+TGG 0.535846 5.4:-6356408 MS.gene015450:CDS
TTGTGTTTGTGGCTGCTTGG+AGG 0.536203 5.4:-6357502 MS.gene015450:CDS
CCTCGGTGGTTCATGTAAGA+TGG 0.536385 5.4:+6357427 None:intergenic
CTGCAAAGACAGCGATATTG+AGG 0.538484 5.4:+6358382 None:intergenic
GATGACACTCTCGGTATCAC+AGG 0.543941 5.4:-6357056 MS.gene015450:CDS
ATTTGTAACTATGTTGGCAG+AGG 0.544121 5.4:+6358666 None:intergenic
TTTATCAGGAGGAGAAGTGA+TGG 0.545785 5.4:-6358764 MS.gene015450:intron
TTAAGATTATCTGCAATCCA+TGG 0.549313 5.4:+6356533 None:intergenic
TATTACTTCATTGTAAACCT+AGG 0.551454 5.4:-6357695 MS.gene015450:CDS
AATAATCATAAAGCCTCCCT+TGG 0.555546 5.4:+6356510 None:intergenic
GCTAAGAATGCTCCCCATAT+GGG 0.555683 5.4:-6357116 MS.gene015450:CDS
AAAGATCTAAAACTGGTGGT+TGG 0.556347 5.4:-6358886 MS.gene015450:CDS
TTCTCAGAGAATGTCCAGAT+GGG 0.558361 5.4:-6356661 MS.gene015450:CDS
TTTCTCAGAGAATGTCCAGA+TGG 0.560013 5.4:-6356662 MS.gene015450:CDS
GTATGTGTACAAGGATAAGA+AGG 0.564955 5.4:-6356426 MS.gene015450:CDS
TTTATGCTTTGTTTGTTCGG+TGG 0.566441 5.4:-6358628 MS.gene015450:CDS
TGGGATGAAAACTATGAGCA+TGG 0.566517 5.4:-6356642 MS.gene015450:CDS
GATCATCAGGGTAGAGATTG+GGG 0.567129 5.4:-6357635 MS.gene015450:CDS
TCACTGCCATAAGAGATCCT+AGG 0.569563 5.4:+6357678 None:intergenic
AAGAGCATCGCGGAATCAGA+AGG 0.573794 5.4:+6357461 None:intergenic
ACAACTATGGATCGCCACAT+TGG 0.574441 5.4:-6357031 MS.gene015450:CDS
CAGATAATCTTAACCAAGGG+AGG 0.574651 5.4:-6356523 MS.gene015450:CDS
GTTGTATGTTCCTTGCATGT+TGG 0.576661 5.4:+6357884 None:intergenic
TGAGTCAACGGACTACCTAC+CGG 0.582971 5.4:+6357533 None:intergenic
TGCAAAGTGGTATGTGTACA+AGG 0.585233 5.4:-6356435 MS.gene015450:CDS
CCTGATGCCTATGACTGTAA+GGG 0.586443 5.4:-6358920 MS.gene015450:CDS
GAATCATGAAGATAAGTAAG+TGG 0.587811 5.4:-6357180 MS.gene015450:CDS
TTTCTAGGCGACACTTACAT+TGG 0.589042 5.4:-6358604 MS.gene015450:CDS
CCTAAGTCCTCCAACATGCA+AGG 0.595704 5.4:-6357894 MS.gene015450:CDS
GATAAGAAGGTTGCTGAGGA+AGG 0.597576 5.4:-6356413 MS.gene015450:CDS
CTCTGCTTCTTGATCCTCGG+TGG 0.598843 5.4:+6357413 None:intergenic
TAGTCCGTTGACTCAGATTG+CGG 0.599300 5.4:-6357525 MS.gene015450:CDS
ACAACCGCAATCTGAGTCAA+CGG 0.600026 5.4:+6357521 None:intergenic
AGGATGTCATCGATGCTGCT+GGG 0.602143 5.4:+6356993 None:intergenic
GATGATCTTGTATGTAAACA+AGG 0.604754 5.4:+6357651 None:intergenic
ATGGAAAGGTTGACAACACT+AGG 0.607239 5.4:-6358745 MS.gene015450:CDS
TTAACATTTGCACAATCACA+TGG 0.609665 5.4:-6356797 MS.gene015450:CDS
GGGATGAAAACTATGAGCAT+GGG 0.611383 5.4:-6356641 MS.gene015450:CDS
ATCAAGGACTATGAAAGTGT+TGG 0.611419 5.4:-6357205 MS.gene015450:CDS
AGTTCAAATGATGACACTCT+CGG 0.615015 5.4:-6357065 MS.gene015450:CDS
AAGGTTGCTGAGGAAGGCAT+GGG 0.615646 5.4:-6356407 MS.gene015450:CDS
CAAGGATAAGAAGGTTGCTG+AGG 0.616944 5.4:-6356417 MS.gene015450:CDS
TTGCAGATAATCTTAACCAA+GGG 0.627914 5.4:-6356526 MS.gene015450:CDS
CGATGGTTGATGCCCATATG+GGG 0.629413 5.4:+6357104 None:intergenic
TGGTTTGGTGAATGATCCAA+CGG 0.633408 5.4:-6356777 MS.gene015450:CDS
ATTGCAGATAATCTTAACCA+AGG 0.634000 5.4:-6356527 MS.gene015450:CDS
CACCGAGGATCAAGAAGCAG+AGG 0.635285 5.4:-6357412 MS.gene015450:CDS
GTGTCATTAGTCCAGTTGCA+AGG 0.637046 5.4:-6356928 MS.gene015450:CDS
CCTTACAGTCATAGGCATCA+GGG 0.637502 5.4:+6358921 None:intergenic
ATTGATCTGAACCAAAGCCA+GGG 0.638982 5.4:+6357771 None:intergenic
TAACAGGTCCAAGTAAACCA+TGG 0.640549 5.4:-6356550 MS.gene015450:CDS
TGTAAAGGGGTAAGCCCTTG+TGG 0.646381 5.4:+6356890 None:intergenic
AACTCCAGTATGCTGTAAAG+GGG 0.649597 5.4:+6356877 None:intergenic
TATCGTTACAAGAAACCGGT+AGG 0.652089 5.4:-6357548 MS.gene015450:CDS
GCAGAAAGATCTAAAACTGG+TGG 0.653653 5.4:-6358890 MS.gene015450:CDS
TACCGAAACTGTTTGCTGTG+TGG 0.658099 5.4:+6357386 None:intergenic
TTGCAACTGGACTAATGACA+CGG 0.673194 5.4:+6356930 None:intergenic
TGTCACTGCACTTGGCACAG+GGG 0.685312 5.4:-6357810 MS.gene015450:CDS
GTTTACATACAAGATCATCA+GGG 0.688578 5.4:-6357647 MS.gene015450:CDS
TATACTTGGCTTGTGCAAAG+TGG 0.710999 5.4:-6356448 MS.gene015450:CDS
TTGAACAGTCCAAAACACGA+TGG 0.740184 5.4:+6357087 None:intergenic
CCATCTTACATGAACCACCG+AGG 0.777518 5.4:-6357427 MS.gene015450:CDS
ATCGTCGTTAAAGAGCATCG+CGG 0.800724 5.4:+6357451 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTATTCATAATTTAAT+AGG - chr5.4:6357402-6357421 MS.gene015450:CDS 10.0%
!!! ATTATGATGAATTATTTTAT+AGG + chr5.4:6357302-6357321 None:intergenic 10.0%
!!! GTTTTATTCATAATTTAATA+GGG - chr5.4:6357403-6357422 MS.gene015450:CDS 10.0%
!! TAAAATCAATACAAAAGAAA+CGG + chr5.4:6356560-6356579 None:intergenic 15.0%
!!! AGATATATTTTATAAAGTGT+CGG - chr5.4:6358030-6358049 MS.gene015450:intron 15.0%
!!! GAAATGTTGATTATTAAATT+GGG + chr5.4:6357075-6357094 None:intergenic 15.0%
!!! TATAAATTTGATGATATACT+TGG - chr5.4:6358894-6358913 MS.gene015450:CDS 15.0%
!!! TATAGGAAAATTTGTTTTAT+AGG + chr5.4:6357285-6357304 None:intergenic 15.0%
!!! TGAAATGTTGATTATTAAAT+TGG + chr5.4:6357076-6357095 None:intergenic 15.0%
!! AACAAAATTTGTAACTATGT+TGG + chr5.4:6356699-6356718 None:intergenic 20.0%
!! AATAAATTTATAGCAAGTTG+CGG + chr5.4:6357150-6357169 None:intergenic 20.0%
!! ATACAAAAGACAAAATCAAA+GGG + chr5.4:6357217-6357236 None:intergenic 20.0%
!! ATATGGTTAAATTTCTCAAT+TGG - chr5.4:6357638-6357657 MS.gene015450:CDS 20.0%
!! TATCTATAACACTATCTAAA+GGG - chr5.4:6357234-6357253 MS.gene015450:intron 20.0%
!!! AACATAGTTACAAATTTTGT+TGG - chr5.4:6356698-6356717 MS.gene015450:CDS 20.0%
! AATATCTACGATAAGATACA+AGG + chr5.4:6358007-6358026 None:intergenic 25.0%
! AATTTGGTCACATATTTAAC+AGG - chr5.4:6356644-6356663 MS.gene015450:CDS 25.0%
! ACACTACAGTAAAAAAAAAG+CGG - chr5.4:6357324-6357343 MS.gene015450:intron 25.0%
! AGCAAACAATAAACAGTTAA+CGG - chr5.4:6357504-6357523 MS.gene015450:CDS 25.0%
! AGTTCTTTCAATCTTATCTA+TGG - chr5.4:6358507-6358526 MS.gene015450:intron 25.0%
! ATACTTGTTCGATATTAGTA+AGG - chr5.4:6357179-6357198 MS.gene015450:CDS 25.0%
! ATATCTACGATAAGATACAA+GGG + chr5.4:6358006-6358025 None:intergenic 25.0%
! GAAATTTGATTGATACTGTT+AGG + chr5.4:6356894-6356913 None:intergenic 25.0%
! GATACAAAAGACAAAATCAA+AGG + chr5.4:6357218-6357237 None:intergenic 25.0%
! GTATCTATAACACTATCTAA+AGG - chr5.4:6357233-6357252 MS.gene015450:intron 25.0%
! TAAAGAAGAGAAGAAACATA+TGG - chr5.4:6357621-6357640 MS.gene015450:CDS 25.0%
! TAAATATGTGACCAAATTCA+CGG + chr5.4:6356642-6356661 None:intergenic 25.0%
! TACAAAAGACAAAATCAAAG+GGG + chr5.4:6357216-6357235 None:intergenic 25.0%
! TATTACTTCATTGTAAACCT+AGG - chr5.4:6357661-6357680 MS.gene015450:CDS 25.0%
!! ACAATTTTGTCTTGTGTTAT+GGG + chr5.4:6356415-6356434 None:intergenic 25.0%
!! TAAAGGGAATATGAGATTTT+TGG - chr5.4:6357250-6357269 MS.gene015450:intron 25.0%
!! TATATTTTCGAACAGCTTTT+TGG - chr5.4:6358117-6358136 MS.gene015450:intron 25.0%
!!! TATGTGTCTTTTTGTTTATC+AGG - chr5.4:6356578-6356597 MS.gene015450:CDS 25.0%
!!! TCATTTATGCTTTGTTTGTT+CGG - chr5.4:6356725-6356744 MS.gene015450:CDS 25.0%
!!! TTATGATTATTACTGGCTTT+TGG - chr5.4:6358858-6358877 MS.gene015450:intron 25.0%
!!! TTTGAAATGATTTTCCAATG+TGG + chr5.4:6358342-6358361 None:intergenic 25.0%
AAGTGCTTAAAAATCCACAA+GGG - chr5.4:6358452-6358471 MS.gene015450:intron 30.0%
ATCAACCAGAAAACACTTAA+TGG + chr5.4:6358613-6358632 None:intergenic 30.0%
ATTGCAGATAATCTTAACCA+AGG - chr5.4:6358829-6358848 MS.gene015450:intron 30.0%
ATTTGTGAGACCTAATATCA+TGG + chr5.4:6356506-6356525 None:intergenic 30.0%
CAATTTCACTTCTTCTACAT+CGG + chr5.4:6358218-6358237 None:intergenic 30.0%
GAATCATGAAGATAAGTAAG+TGG - chr5.4:6358176-6358195 MS.gene015450:intron 30.0%
GAGAATAGTTCCAATTAAGA+AGG + chr5.4:6358386-6358405 None:intergenic 30.0%
GATGATCTTGTATGTAAACA+AGG + chr5.4:6357708-6357727 None:intergenic 30.0%
GTTTACATACAAGATCATCA+GGG - chr5.4:6357709-6357728 MS.gene015450:CDS 30.0%
TAATGACACGGTCATAAAAA+GGG + chr5.4:6358417-6358436 None:intergenic 30.0%
TAGTTGTCCCATATACATAA+AGG + chr5.4:6358668-6358687 None:intergenic 30.0%
TATACTAGTTAATTAGTGCG+TGG - chr5.4:6356783-6356802 MS.gene015450:CDS 30.0%
TCAACCAGAAAACACTTAAT+GGG + chr5.4:6358612-6358631 None:intergenic 30.0%
TCCACAGTGAATAAAATAAC+AGG - chr5.4:6358790-6358809 MS.gene015450:intron 30.0%
TGTTTACATACAAGATCATC+AGG - chr5.4:6357708-6357727 MS.gene015450:CDS 30.0%
TTAACAGGTACAATGCATTT+GGG - chr5.4:6356659-6356678 MS.gene015450:CDS 30.0%
TTAACATTTGCACAATCACA+TGG - chr5.4:6358559-6358578 MS.gene015450:intron 30.0%
TTAAGATTATCTGCAATCCA+TGG + chr5.4:6358826-6358845 None:intergenic 30.0%
TTGCAGATAATCTTAACCAA+GGG - chr5.4:6358830-6358849 MS.gene015450:intron 30.0%
TTTAACAGGTACAATGCATT+TGG - chr5.4:6356658-6356677 MS.gene015450:CDS 30.0%
! AAAGTGCTTAAAAATCCACA+AGG - chr5.4:6358451-6358470 MS.gene015450:intron 30.0%
! CAATTTTGTCTTGTGTTATG+GGG + chr5.4:6356414-6356433 None:intergenic 30.0%
! GACAATTTTGTCTTGTGTTA+TGG + chr5.4:6356416-6356435 None:intergenic 30.0%
! TAAGTATCGTTACAAGAAAC+CGG - chr5.4:6357804-6357823 MS.gene015450:CDS 30.0%
!!! ACCTGTTATTTTATTCACTG+TGG + chr5.4:6358794-6358813 None:intergenic 30.0%
AACACTTTCATAGTCCTTGA+TGG + chr5.4:6358152-6358171 None:intergenic 35.0%
AATAATCATAAAGCCTCCCT+TGG + chr5.4:6358849-6358868 None:intergenic 35.0%
ACTTCAGCTTCCATGATATT+AGG - chr5.4:6356493-6356512 MS.gene015450:CDS 35.0%
AGGAGAGTCCTTTATGTATA+TGG - chr5.4:6358657-6358676 MS.gene015450:CDS 35.0%
AGTTCAAATGATGACACTCT+CGG - chr5.4:6358291-6358310 MS.gene015450:intron 35.0%
ATTCTTGAGCTCAAGATCTT+TGG - chr5.4:6358741-6358760 MS.gene015450:CDS 35.0%
ATTTGCACAATCACATGGTT+TGG - chr5.4:6358564-6358583 MS.gene015450:intron 35.0%
ATTTGTAACTATGTTGGCAG+AGG + chr5.4:6356693-6356712 None:intergenic 35.0%
CGATGTAGAAGAAGTGAAAT+TGG - chr5.4:6358216-6358235 MS.gene015450:intron 35.0%
CTAATGACACGGTCATAAAA+AGG + chr5.4:6358418-6358437 None:intergenic 35.0%
GGAGAGTCCTTTATGTATAT+GGG - chr5.4:6358658-6358677 MS.gene015450:CDS 35.0%
GGTCATAAAAAGGGACATTT+AGG + chr5.4:6358408-6358427 None:intergenic 35.0%
GTATGTGTACAAGGATAAGA+AGG - chr5.4:6358930-6358949 MS.gene015450:CDS 35.0%
GTTAGGACTAATTGAGTGTT+TGG + chr5.4:6356877-6356896 None:intergenic 35.0%
TAGTGTGAGATGTAGTTAGT+TGG - chr5.4:6358063-6358082 MS.gene015450:intron 35.0%
TCGATGACATCCTTCTTAAT+TGG - chr5.4:6358373-6358392 MS.gene015450:CDS 35.0%
TGTAAACCTAGGATCTCTTA+TGG - chr5.4:6357672-6357691 MS.gene015450:CDS 35.0%
TTCTTGAGCTCAAGATCTTT+GGG - chr5.4:6358742-6358761 MS.gene015450:CDS 35.0%
! AAAGATCTAAAACTGGTGGT+TGG - chr5.4:6356470-6356489 MS.gene015450:CDS 35.0%
! AGATCCCATTAAGTGTTTTC+TGG - chr5.4:6358605-6358624 MS.gene015450:CDS 35.0%
! ATCAAGGACTATGAAAGTGT+TGG - chr5.4:6358151-6358170 MS.gene015450:intron 35.0%
! ATTCCTTACTGTTGCTTGAA+CGG + chr5.4:6357000-6357019 None:intergenic 35.0%
! GGAGGCTTTATGATTATTAC+TGG - chr5.4:6358851-6358870 MS.gene015450:intron 35.0%
!! GTGTCTTTTTGTTTATCAGG+AGG - chr5.4:6356581-6356600 MS.gene015450:CDS 35.0%
!! TTTATGCTTTGTTTGTTCGG+TGG - chr5.4:6356728-6356747 MS.gene015450:CDS 35.0%
!!! GCACTTGTTGTGTTTTTATG+CGG - chr5.4:6357775-6357794 MS.gene015450:CDS 35.0%
AACTCCAGTATGCTGTAAAG+GGG + chr5.4:6358482-6358501 None:intergenic 40.0%
AAGATCATCAGGGTAGAGAT+TGG - chr5.4:6357719-6357738 MS.gene015450:CDS 40.0%
AATTGATCTGAACCAAAGCC+AGG + chr5.4:6357589-6357608 None:intergenic 40.0%
ACTAGGCATAACCGTGAATT+TGG - chr5.4:6356628-6356647 MS.gene015450:CDS 40.0%
AGATCATCAGGGTAGAGATT+GGG - chr5.4:6357720-6357739 MS.gene015450:CDS 40.0%
ATGGAAAGGTTGACAACACT+AGG - chr5.4:6356611-6356630 MS.gene015450:CDS 40.0%
ATTGATCTGAACCAAAGCCA+GGG + chr5.4:6357588-6357607 None:intergenic 40.0%
CAACTCCAGTATGCTGTAAA+GGG + chr5.4:6358483-6358502 None:intergenic 40.0%
CAGATAATCTTAACCAAGGG+AGG - chr5.4:6358833-6358852 MS.gene015450:intron 40.0%
CATAGTATGCTTTATCCACC+AGG - chr5.4:6357120-6357139 MS.gene015450:CDS 40.0%
GATCCCACGATGAAAAATTG+CGG + chr5.4:6358637-6358656 None:intergenic 40.0%
GGGATGAAAACTATGAGCAT+GGG - chr5.4:6358715-6358734 MS.gene015450:CDS 40.0%
GTTGTATGTTCCTTGCATGT+TGG + chr5.4:6357475-6357494 None:intergenic 40.0%
TAACAGGTCCAAGTAAACCA+TGG - chr5.4:6358806-6358825 MS.gene015450:intron 40.0%
TACCACACAGCAAACAGTTT+CGG - chr5.4:6357968-6357987 MS.gene015450:intron 40.0%
TATCGTTACAAGAAACCGGT+AGG - chr5.4:6357808-6357827 MS.gene015450:CDS 40.0%
TCTGCAATCCATGGTTTACT+TGG + chr5.4:6358817-6358836 None:intergenic 40.0%
TGCAAAGTGGTATGTGTACA+AGG - chr5.4:6358921-6358940 MS.gene015450:CDS 40.0%
TGGAAAACCCTTACAGTCAT+AGG + chr5.4:6356446-6356465 None:intergenic 40.0%
TGGGATGAAAACTATGAGCA+TGG - chr5.4:6358714-6358733 MS.gene015450:CDS 40.0%
TTAAGCACTTTCCTTGCAAC+TGG + chr5.4:6358442-6358461 None:intergenic 40.0%
TTCTCAGAGAATGTCCAGAT+GGG - chr5.4:6358695-6358714 MS.gene015450:CDS 40.0%
TTGAACAGTCCAAAACACGA+TGG + chr5.4:6358272-6358291 None:intergenic 40.0%
TTGCAACTGGACTAATGACA+CGG + chr5.4:6358429-6358448 None:intergenic 40.0%
TTTATCAGGAGGAGAAGTGA+TGG - chr5.4:6356592-6356611 MS.gene015450:CDS 40.0%
TTTCTAGGCGACACTTACAT+TGG - chr5.4:6356752-6356771 MS.gene015450:CDS 40.0%
TTTCTCAGAGAATGTCCAGA+TGG - chr5.4:6358694-6358713 MS.gene015450:CDS 40.0%
! ATGCCGCAATTTTTCATCGT+GGG - chr5.4:6358631-6358650 MS.gene015450:CDS 40.0%
! ATTGAGGTATCTGTCACAGA+AGG + chr5.4:6356961-6356980 None:intergenic 40.0%
! CAATTTTTCATCGTGGGATC+AGG - chr5.4:6358637-6358656 MS.gene015450:CDS 40.0%
! CACTTCTTCTACATCGGTTA+AGG + chr5.4:6358212-6358231 None:intergenic 40.0%
! CCAGCAGAAAGATCTAAAAC+TGG - chr5.4:6356463-6356482 MS.gene015450:CDS 40.0%
! CTCATAGTTTTCATCCCATC+TGG + chr5.4:6358712-6358731 None:intergenic 40.0%
! CTGGTGGATAAAGCATACTA+TGG + chr5.4:6357122-6357141 None:intergenic 40.0%
! GAACAGCTTTTTGGACAAAG+CGG - chr5.4:6358126-6358145 MS.gene015450:intron 40.0%
! GCAGAAAGATCTAAAACTGG+TGG - chr5.4:6356466-6356485 MS.gene015450:CDS 40.0%
!! AAGGACTATGAAAGTGTTGG+TGG - chr5.4:6358154-6358173 MS.gene015450:intron 40.0%
!! TATACTTGGCTTGTGCAAAG+TGG - chr5.4:6358908-6358927 MS.gene015450:CDS 40.0%
!! TGGTTTGGTGAATGATCCAA+CGG - chr5.4:6358579-6358598 MS.gene015450:intron 40.0%
!!! CCAGTTTTAGATCTTTCTGC+TGG + chr5.4:6356466-6356485 None:intergenic 40.0%
!!! GGGAATATGAGATTTTTGGC+TGG - chr5.4:6357254-6357273 MS.gene015450:intron 40.0%
AACCTCTGCTTCTTGATCCT+CGG + chr5.4:6357949-6357968 None:intergenic 45.0%
ACAACCGCAATCTGAGTCAA+CGG + chr5.4:6357838-6357857 None:intergenic 45.0%
ACAACTATGGATCGCCACAT+TGG - chr5.4:6358325-6358344 MS.gene015450:intron 45.0%
CAAGGATAAGAAGGTTGCTG+AGG - chr5.4:6358939-6358958 MS.gene015450:CDS 45.0%
CACGATGTTAACCGTGATTC+TGG - chr5.4:6356836-6356855 MS.gene015450:CDS 45.0%
CCAACTCCAGTATGCTGTAA+AGG + chr5.4:6358484-6358503 None:intergenic 45.0%
CCTGATGCCTATGACTGTAA+GGG - chr5.4:6356436-6356455 MS.gene015450:CDS 45.0%
CCTTACAGTCATAGGCATCA+GGG + chr5.4:6356438-6356457 None:intergenic 45.0%
CCTTTACAGCATACTGGAGT+TGG - chr5.4:6358481-6358500 MS.gene015450:intron 45.0%
CTGCAAAGACAGCGATATTG+AGG + chr5.4:6356977-6356996 None:intergenic 45.0%
CTTAATGGGATCTTTGCCGT+TGG + chr5.4:6358598-6358617 None:intergenic 45.0%
CTTACCCCTTTACAGCATAC+TGG - chr5.4:6358475-6358494 MS.gene015450:intron 45.0%
GATAAGAAGGTTGCTGAGGA+AGG - chr5.4:6358943-6358962 MS.gene015450:CDS 45.0%
GATCATCAGGGTAGAGATTG+GGG - chr5.4:6357721-6357740 MS.gene015450:CDS 45.0%
GCTAAGAATGCTCCCCATAT+GGG - chr5.4:6358240-6358259 MS.gene015450:intron 45.0%
GGTATCACAGGCAACAACTA+TGG - chr5.4:6358312-6358331 MS.gene015450:intron 45.0%
GTATGTTCCTTGCATGTTGG+AGG + chr5.4:6357472-6357491 None:intergenic 45.0%
TAGGCGACACTTACATTGGA+AGG - chr5.4:6356756-6356775 MS.gene015450:CDS 45.0%
TCACTGCCATAAGAGATCCT+AGG + chr5.4:6357681-6357700 None:intergenic 45.0%
TCAGATTGCGGTTGTGTTTG+TGG - chr5.4:6357843-6357862 MS.gene015450:CDS 45.0%
TGCTAAGAATGCTCCCCATA+TGG - chr5.4:6358239-6358258 MS.gene015450:intron 45.0%
TTGAGTGTTTGGTATCACCG+CGG + chr5.4:6356866-6356885 None:intergenic 45.0%
! ACGATGGTTGATGCCCATAT+GGG + chr5.4:6358256-6358275 None:intergenic 45.0%
! GATGCCGCAATTTTTCATCG+TGG - chr5.4:6358630-6358649 MS.gene015450:CDS 45.0%
! GGTTTAAAATCCAGTGTCCC+TGG - chr5.4:6357568-6357587 MS.gene015450:CDS 45.0%
! GTGTCATTAGTCCAGTTGCA+AGG - chr5.4:6358428-6358447 MS.gene015450:intron 45.0%
! TGTTTGTTCGGTGGCTTTCT+AGG - chr5.4:6356737-6356756 MS.gene015450:CDS 45.0%
!! ATCGTCGTTAAAGAGCATCG+CGG + chr5.4:6357908-6357927 None:intergenic 45.0%
!! TACCGAAACTGTTTGCTGTG+TGG + chr5.4:6357973-6357992 None:intergenic 45.0%
!! TAGTCCGTTGACTCAGATTG+CGG - chr5.4:6357831-6357850 MS.gene015450:CDS 45.0%
AAATCCAGTGTCCCTGGCTT+TGG - chr5.4:6357574-6357593 MS.gene015450:CDS 50.0%
AAGGATGTCATCGATGCTGC+TGG + chr5.4:6358367-6358386 None:intergenic 50.0%
ACCGTGATTCTGGTAATCCG+CGG - chr5.4:6356846-6356865 MS.gene015450:CDS 50.0%
AGGATGTCATCGATGCTGCT+GGG + chr5.4:6358366-6358385 None:intergenic 50.0%
ATGTCACTGCACTTGGCACA+GGG - chr5.4:6357545-6357564 MS.gene015450:CDS 50.0%
CAGCCGTTCAAGCAACAGTA+AGG - chr5.4:6356994-6357013 MS.gene015450:CDS 50.0%
CAGGGTAGAGATTGGGGTTA+TGG - chr5.4:6357727-6357746 MS.gene015450:CDS 50.0%
CATGTTGGAGGACTTAGGCT+TGG + chr5.4:6357460-6357479 None:intergenic 50.0%
CCATCTTACATGAACCACCG+AGG - chr5.4:6357929-6357948 MS.gene015450:CDS 50.0%
CCCTGATGCCTATGACTGTA+AGG - chr5.4:6356435-6356454 MS.gene015450:CDS 50.0%
CCCTTACAGTCATAGGCATC+AGG + chr5.4:6356439-6356458 None:intergenic 50.0%
CCTAAGTCCTCCAACATGCA+AGG - chr5.4:6357462-6357481 MS.gene015450:CDS 50.0%
CCTCGGTGGTTCATGTAAGA+TGG + chr5.4:6357932-6357951 None:intergenic 50.0%
CCTTGCATGTTGGAGGACTT+AGG + chr5.4:6357465-6357484 None:intergenic 50.0%
GATGACACTCTCGGTATCAC+AGG - chr5.4:6358300-6358319 MS.gene015450:intron 50.0%
GCGCTTTATGTCACTGCACT+TGG - chr5.4:6357538-6357557 MS.gene015450:CDS 50.0%
TATGTCACTGCACTTGGCAC+AGG - chr5.4:6357544-6357563 MS.gene015450:CDS 50.0%
TGTAAAGGGGTAAGCCCTTG+TGG + chr5.4:6358469-6358488 None:intergenic 50.0%
TTGTGTTTGTGGCTGCTTGG+AGG - chr5.4:6357854-6357873 MS.gene015450:CDS 50.0%
TTTGGACAAAGCGGCCATCA+AGG - chr5.4:6358135-6358154 MS.gene015450:intron 50.0%
! AAGGTTGCTGAGGAAGGCAT+GGG - chr5.4:6358949-6358968 MS.gene015450:CDS 50.0%
! ACCGCGGATTACCAGAATCA+CGG + chr5.4:6356850-6356869 None:intergenic 50.0%
! CACGATGGTTGATGCCCATA+TGG + chr5.4:6358257-6358276 None:intergenic 50.0%
! CAGGAGGAGAAGTGATGGAA+AGG - chr5.4:6356597-6356616 MS.gene015450:CDS 50.0%
! CGATGGTTGATGCCCATATG+GGG + chr5.4:6358255-6358274 None:intergenic 50.0%
! GGGCATCAACCATCGTGTTT+TGG - chr5.4:6358260-6358279 MS.gene015450:intron 50.0%
!! AAGAGCATCGCGGAATCAGA+AGG + chr5.4:6357898-6357917 None:intergenic 50.0%
!! TGAGTCAACGGACTACCTAC+CGG + chr5.4:6357826-6357845 None:intergenic 50.0%
ATAGCAAGTTGCGGCGATCC+TGG + chr5.4:6357141-6357160 None:intergenic 55.0%
CACCGAGGATCAAGAAGCAG+AGG - chr5.4:6357944-6357963 MS.gene015450:intron 55.0%
CGGTTGTGTTTGTGGCTGCT+TGG - chr5.4:6357851-6357870 MS.gene015450:CDS 55.0%
CTCTGCTTCTTGATCCTCGG+TGG + chr5.4:6357946-6357965 None:intergenic 55.0%
GAAGGTTGCTGAGGAAGGCA+TGG - chr5.4:6358948-6358967 MS.gene015450:CDS 55.0%
TGAACCAAAGCCAGGGACAC+TGG + chr5.4:6357581-6357600 None:intergenic 55.0%
TGTCACTGCACTTGGCACAG+GGG - chr5.4:6357546-6357565 MS.gene015450:CDS 55.0%
TTGTGGCTGCTTGGAGGAAG+AGG - chr5.4:6357860-6357879 MS.gene015450:CDS 55.0%
GTCACTGCACTTGGCACAGG+GGG - chr5.4:6357547-6357566 MS.gene015450:CDS 60.0%
GCAAGTTGCGGCGATCCTGG+TGG + chr5.4:6357138-6357157 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 6356400 6358978 6356400 ID=MS.gene015450
chr5.4 mRNA 6356400 6358978 6356400 ID=MS.gene015450.t1;Parent=MS.gene015450
chr5.4 exon 6358864 6358978 6358864 ID=MS.gene015450.t1.exon1;Parent=MS.gene015450.t1
chr5.4 CDS 6358864 6358978 6358864 ID=cds.MS.gene015450.t1;Parent=MS.gene015450.t1
chr5.4 exon 6358601 6358778 6358601 ID=MS.gene015450.t1.exon2;Parent=MS.gene015450.t1
chr5.4 CDS 6358601 6358778 6358601 ID=cds.MS.gene015450.t1;Parent=MS.gene015450.t1
chr5.4 exon 6358368 6358407 6358368 ID=MS.gene015450.t1.exon3;Parent=MS.gene015450.t1
chr5.4 CDS 6358368 6358407 6358368 ID=cds.MS.gene015450.t1;Parent=MS.gene015450.t1
chr5.4 exon 6357389 6357954 6357389 ID=MS.gene015450.t1.exon4;Parent=MS.gene015450.t1
chr5.4 CDS 6357389 6357954 6357389 ID=cds.MS.gene015450.t1;Parent=MS.gene015450.t1
chr5.4 exon 6356400 6357246 6356400 ID=MS.gene015450.t1.exon5;Parent=MS.gene015450.t1
chr5.4 CDS 6356400 6357246 6356400 ID=cds.MS.gene015450.t1;Parent=MS.gene015450.t1
Gene Sequence

>MS.gene015450

ATGGGCACTCTCCCCATAACACAAGACAAAATTGTCCCTGATGCCTATGACTGTAAGGGTTTTCCAGCAGAAAGATCTAAAACTGGTGGTTGGACTTCAGCTTCCATGATATTAGGTCTCACAAATTAATCAATCACTCTCTTCTACTGCATGCATGCCGTTTCTTTTGTATTGATTTTATGTGTCTTTTTGTTTATCAGGAGGAGAAGTGATGGAAAGGTTGACAACACTAGGCATAACCGTGAATTTGGTCACATATTTAACAGGTACAATGCATTTGGGTAACGCTGCCTCTGCCAACATAGTTACAAATTTTGTTGGAACTTCATTTATGCTTTGTTTGTTCGGTGGCTTTCTAGGCGACACTTACATTGGAAGGTTCGTATACTAGTTAATTAGTGCGTGGATGTTTGTTATCACGTGAGTTTGTCATAATCACGATGTTAACCGTGATTCTGGTAATCCGCGGTGATACCAAACACTCAATTAGTCCTAACAGTATCAATCAAATTTCTTTTTAGTTTCATTTCATTCAAGTGATATTTCGTTATTTTTGTTCCTTCTGTGACAGATACCTCAATATCGCTGTCTTTGCAGCCGTTCAAGCAACAGTAAGGAATCAAAACATGTTACTATTCATATTTGTTGCTAGCTACTAGTTTTGCTTTTACACCCAATTTAATAATCAACATTTCATTTTCATCTAAATATCTACACAACCATAGTATGCTTTATCCACCAGGATCGCCGCAACTTGCTATAAATTTATTATTATCTTTATACTTGTTCGATATTAGTAAGGTTTATTGTCTACCCCTTTGATTTTGTCTTTTGTATCTATAACACTATCTAAAGGGAATATGAGATTTTTGGCTGGATTTTCCTATAAAACAAATTTTCCTATAAAATAATTCATCATAATTTACACTACAGTAAAAAAAAAGCGGAGAAATTGAACGCTAGTTTCTAATAATAATGATAATTTAAGAGTTTAATTTTGATAGTTTTATTCATAATTTAATAGGGTGTTGCTCTCTTGATGATATCAACTATAATTCCAAGCCTAAGTCCTCCAACATGCAAGGAACATACAACTTGTGTAAAAGCAAACAATAAACAGTTAACGGTTCTGTTTTTAGCGCTTTATGTCACTGCACTTGGCACAGGGGGTTTAAAATCCAGTGTCCCTGGCTTTGGTTCAGATCAATTTGATGCTACTGATAAAGAAGAGAAGAAACATATGGTTAAATTTCTCAATTGGTATTACTTCATTGTAAACCTAGGATCTCTTATGGCAGTGACAGTCCTTGTTTACATACAAGATCATCAGGGTAGAGATTGGGGTTATGGTATCTGTGCTTGTGCTATTGTGCTAGCACTTGTTGTGTTTTTATGCGGAACATGTAAGTATCGTTACAAGAAACCGGTAGGTAGTCCGTTGACTCAGATTGCGGTTGTGTTTGTGGCTGCTTGGAGGAAGAGGAACTTGCAATTGCCTTCTGATTCCGCGATGCTCTTTAACGACGATGCCATCTTACATGAACCACCGAGGATCAAGAAGCAGAGGTTACCACACAGCAAACAGTTTCGGTAACACTTTTTACCCTTGTATCTTATCGTAGATATTTGTAGATATATTTTATAAAGTGTCGGAATACTATAATAGTGTGAGATGTAGTTAGTTGGATGCATGTGTAAAGTTAACTGATAGTGTAAATATATTTTCGAACAGCTTTTTGGACAAAGCGGCCATCAAGGACTATGAAAGTGTTGGTGGAATCATGAAGATAAGTAAGTGGCATCTATCTACCTTAACCGATGTAGAAGAAGTGAAATTGGTGCTAAGAATGCTCCCCATATGGGCATCAACCATCGTGTTTTGGACTGTTCAAGTTCAAATGATGACACTCTCGGTATCACAGGCAACAACTATGGATCGCCACATTGGAAAATCATTTCAAATCCCAGCAGCATCGATGACATCCTTCTTAATTGGAACTATTCTCCTAAATGTCCCTTTTTATGACCGTGTCATTAGTCCAGTTGCAAGGAAAGTGCTTAAAAATCCACAAGGGCTTACCCCTTTACAGCATACTGGAGTTGGTTTAGTTCTTTCAATCTTATCTATGGTTGCAGCAGCTCTTGTCGAACAAAAGCGATTAACATTTGCACAATCACATGGTTTGGTGAATGATCCAACGGCAAAGATCCCATTAAGTGTTTTCTGGTTGATGCCGCAATTTTTCATCGTGGGATCAGGAGAGTCCTTTATGTATATGGGACAACTAGACTTTTTTCTCAGAGAATGTCCAGATGGGATGAAAACTATGAGCATGGGACTATTCTTGAGCTCAAGATCTTTGGGATTTTTCTTCAGCTCTTTATTAGTGTCCACAGTGAATAAAATAACAGGTCCAAGTAAACCATGGATTGCAGATAATCTTAACCAAGGGAGGCTTTATGATTATTACTGGCTTTTGGCTATGTTGAGTGCTATAAATTTGATGATATACTTGGCTTGTGCAAAGTGGTATGTGTACAAGGATAAGAAGGTTGCTGAGGAAGGCATGGGAGAGTAA

Protein sequence

>MS.gene015450.t1

MGTLPITQDKIVPDAYDCKGFPAERSKTGGWTSASMILGGEVMERLTTLGITVNLVTYLTGTMHLGNAASANIVTNFVGTSFMLCLFGGFLGDTYIGRYLNIAVFAAVQATGVALLMISTIIPSLSPPTCKEHTTCVKANNKQLTVLFLALYVTALGTGGLKSSVPGFGSDQFDATDKEEKKHMVKFLNWYYFIVNLGSLMAVTVLVYIQDHQGRDWGYGICACAIVLALVVFLCGTCKYRYKKPVGSPLTQIAVVFVAAWRKRNLQLPSDSAMLFNDDAILHEPPRIKKQRLPHSKQFRFLDKAAIKDYESVGGIMKISKWHLSTLTDVEEVKLVLRMLPIWASTIVFWTVQVQMMTLSVSQATTMDRHIGKSFQIPAASMTSFLIGTILLNVPFYDRVISPVARKVLKNPQGLTPLQHTGVGLVLSILSMVAAALVEQKRLTFAQSHGLVNDPTAKIPLSVFWLMPQFFIVGSGESFMYMGQLDFFLRECPDGMKTMSMGLFLSSRSLGFFFSSLLVSTVNKITGPSKPWIADNLNQGRLYDYYWLLAMLSAINLMIYLACAKWYVYKDKKVAEEGMGE