AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072108


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072108.t1 MTR_2g005130 98.649 592 7 1 1 591 1 592 0.0 1197
MS.gene072108.t1 MTR_1g085090 40.109 551 313 9 39 577 18 563 5.59e-143 427
MS.gene072108.t1 MTR_2g017750 38.917 591 325 10 16 572 10 598 1.15e-142 426
MS.gene072108.t1 MTR_7g111260 41.682 535 295 8 39 562 18 546 1.18e-139 418
MS.gene072108.t1 MTR_8g087810 41.136 581 310 7 21 569 2 582 4.64e-139 417
MS.gene072108.t1 MTR_3g100980 39.746 551 300 8 34 562 10 550 8.87e-137 410
MS.gene072108.t1 MTR_8g087780 39.547 574 316 6 21 563 2 575 8.30e-136 408
MS.gene072108.t1 MTR_3g462710 40.000 565 312 11 26 568 10 569 3.36e-135 406
MS.gene072108.t1 MTR_3g100980 37.824 579 300 9 34 562 10 578 2.05e-130 395
MS.gene072108.t1 MTR_5g038380 39.716 564 304 8 29 562 17 574 8.51e-129 390
MS.gene072108.t1 MTR_4g107670 38.811 572 303 11 29 564 13 573 9.46e-129 390
MS.gene072108.t1 MTR_5g012270 37.113 582 329 10 19 572 8 580 1.02e-127 387
MS.gene072108.t1 MTR_7g067010 37.986 566 322 10 20 562 2 561 1.73e-127 386
MS.gene072108.t1 MTR_8g469310 40.105 571 291 9 29 562 15 571 1.70e-126 384
MS.gene072108.t1 MTR_4g015080 37.043 575 333 11 11 562 3 571 3.00e-123 375
MS.gene072108.t1 MTR_5g012290 36.000 600 345 10 11 583 3 590 1.68e-122 374
MS.gene072108.t1 MTR_4g101380 39.405 571 312 11 30 572 17 581 2.07e-121 371
MS.gene072108.t1 MTR_4g123537 37.011 562 332 9 18 566 22 574 2.12e-121 372
MS.gene072108.t1 MTR_3g112470 34.501 571 353 8 24 581 7 569 1.31e-116 358
MS.gene072108.t1 MTR_5g055000 36.412 563 330 9 25 562 1 560 1.55e-116 358
MS.gene072108.t1 MTR_3g112460 33.975 571 356 9 24 581 7 569 3.06e-116 357
MS.gene072108.t1 MTR_7g098200 34.783 598 359 10 17 590 5 595 8.88e-116 357
MS.gene072108.t1 MTR_5g085850 36.234 563 337 8 26 575 16 569 6.58e-114 352
MS.gene072108.t1 MTR_7g098200 34.524 588 364 9 17 590 5 585 1.45e-113 351
MS.gene072108.t1 MTR_1g075440 37.153 576 328 10 14 566 6 570 1.83e-113 351
MS.gene072108.t1 MTR_3g462710 41.901 463 242 11 128 568 3 460 4.53e-113 345
MS.gene072108.t1 MTR_7g098160 34.134 583 356 8 21 581 14 590 1.42e-112 349
MS.gene072108.t1 MTR_3g069500 35.026 571 348 10 16 573 10 570 3.91e-112 347
MS.gene072108.t1 MTR_7g098180 35.201 571 339 9 16 562 7 570 2.39e-111 345
MS.gene072108.t1 MTR_7g098040 34.247 584 346 10 1 562 5 572 9.06e-110 342
MS.gene072108.t1 MTR_7g098230 34.111 557 339 8 47 581 33 583 2.66e-109 340
MS.gene072108.t1 MTR_3g112450 33.640 544 342 7 24 553 7 545 2.26e-108 337
MS.gene072108.t1 MTR_7g065080 33.929 560 349 10 16 562 7 558 1.81e-107 335
MS.gene072108.t1 MTR_7g098090 33.950 595 358 10 16 581 7 595 1.99e-107 336
MS.gene072108.t1 MTR_4g114340 38.616 549 314 11 29 559 13 556 6.92e-107 333
MS.gene072108.t1 MTR_3g069440 35.315 572 334 10 24 571 17 576 1.91e-105 330
MS.gene072108.t1 MTR_7g098220 34.446 569 344 11 16 562 7 568 9.13e-105 328
MS.gene072108.t1 MTR_1g042310 34.622 569 348 10 18 566 4 568 2.13e-104 327
MS.gene072108.t1 MTR_1g041835 35.428 573 345 9 14 566 1 568 4.63e-104 326
MS.gene072108.t1 MTR_4g019580 32.628 567 355 11 16 562 10 569 3.16e-103 324
MS.gene072108.t1 MTR_1g041815 35.428 573 345 9 14 566 1 568 8.69e-103 323
MS.gene072108.t1 MTR_3g072300 34.669 574 348 10 18 570 2 569 9.65e-103 323
MS.gene072108.t1 MTR_1g041875 33.162 582 372 8 12 580 1 578 1.08e-101 320
MS.gene072108.t1 MTR_7g005930 34.549 576 350 12 1 559 1 566 1.66e-101 320
MS.gene072108.t1 MTR_4g098800 34.929 564 340 10 18 559 14 572 1.84e-100 317
MS.gene072108.t1 MTR_7g010820 34.875 562 339 6 25 561 11 570 2.23e-100 317
MS.gene072108.t1 MTR_7g088790 31.788 604 376 8 12 590 1 593 6.06e-100 316
MS.gene072108.t1 MTR_5g014150 34.099 566 345 9 19 559 23 585 9.10e-100 315
MS.gene072108.t1 MTR_3g069420 31.993 572 357 9 16 562 5 569 1.48e-99 315
MS.gene072108.t1 MTR_4g098800 34.929 564 340 10 18 559 79 637 1.56e-99 317
MS.gene072108.t1 MTR_4g033325 36.189 572 320 13 19 570 10 556 1.79e-99 313
MS.gene072108.t1 MTR_7g088825 31.858 565 355 8 34 573 16 575 2.69e-99 314
MS.gene072108.t1 MTR_7g013270 35.348 546 329 9 33 559 83 623 4.48e-99 315
MS.gene072108.t1 MTR_1g041885 35.800 500 304 8 59 545 1 496 7.30e-99 311
MS.gene072108.t1 MTR_7g098220 34.972 529 316 10 56 562 2 524 2.69e-98 310
MS.gene072108.t1 MTR_0294s0020 34.938 561 327 10 19 562 10 549 4.62e-98 310
MS.gene072108.t1 MTR_7g065080 35.849 477 285 10 99 562 3 471 2.07e-97 306
MS.gene072108.t1 MTR_1g042310 35.084 533 320 10 55 566 4 531 2.29e-97 308
MS.gene072108.t1 MTR_7g088820 30.189 583 368 12 29 581 16 589 1.47e-96 307
MS.gene072108.t1 MTR_7g006540 33.445 598 351 14 26 589 48 632 2.04e-96 308
MS.gene072108.t1 MTR_1g042310 34.848 528 320 10 59 566 1 524 3.15e-96 305
MS.gene072108.t1 MTR_5g038060 34.225 561 339 10 42 575 33 590 7.46e-96 305
MS.gene072108.t1 MTR_3g014790 34.331 568 312 10 43 578 20 558 2.47e-95 303
MS.gene072108.t1 MTR_1g116930 31.842 581 361 13 33 591 17 584 4.19e-95 303
MS.gene072108.t1 MTR_3g005010 35.612 556 313 13 25 562 15 543 4.50e-95 301
MS.gene072108.t1 MTR_7g098200 35.391 486 284 9 128 590 3 481 1.52e-91 290
MS.gene072108.t1 MTR_4g033315 34.595 555 331 10 23 562 14 551 3.11e-91 292
MS.gene072108.t1 MTR_4g033310 34.595 555 331 10 23 562 14 551 3.11e-91 292
MS.gene072108.t1 MTR_4g107580 30.100 598 377 11 7 575 1 586 1.22e-89 289
MS.gene072108.t1 MTR_4g107510 32.007 553 344 10 41 564 37 586 1.23e-88 286
MS.gene072108.t1 MTR_4g033330 34.495 545 317 12 19 544 10 533 1.82e-88 284
MS.gene072108.t1 MTR_7g088820 30.451 532 333 11 80 581 3 527 1.40e-87 281
MS.gene072108.t1 MTR_7g052600 32.731 553 330 12 18 559 4 525 2.35e-87 281
MS.gene072108.t1 MTR_8g038880 33.757 551 313 9 42 562 22 550 1.67e-86 280
MS.gene072108.t1 MTR_7g051830 32.775 537 328 10 30 559 15 525 3.97e-86 278
MS.gene072108.t1 MTR_7g051880 32.463 536 331 10 30 559 15 525 5.46e-86 277
MS.gene072108.t1 MTR_4g033395 34.257 505 295 9 18 503 10 496 5.56e-86 276
MS.gene072108.t1 MTR_4g033375 34.343 495 296 7 24 503 16 496 1.74e-85 275
MS.gene072108.t1 MTR_7g098150 35.240 437 262 5 26 446 19 450 9.13e-85 273
MS.gene072108.t1 MTR_8g469480 32.051 546 343 9 43 562 41 584 1.05e-84 276
MS.gene072108.t1 MTR_4g107530 30.151 597 365 15 1 564 6 583 1.19e-83 273
MS.gene072108.t1 MTR_4g107610 31.459 569 359 12 21 559 2 569 2.67e-82 270
MS.gene072108.t1 MTR_4g033325 38.249 434 234 11 157 570 13 432 1.65e-81 263
MS.gene072108.t1 MTR_4g033325 36.961 487 254 14 104 570 5 458 2.54e-81 263
MS.gene072108.t1 MTR_1g009200 31.690 568 346 12 40 581 27 578 1.96e-80 265
MS.gene072108.t1 MTR_7g064780 28.136 590 398 8 16 581 2 589 2.02e-79 262
MS.gene072108.t1 MTR_5g038190 29.982 557 360 9 32 562 16 568 2.34e-79 261
MS.gene072108.t1 MTR_7g088820 30.189 477 296 11 135 581 10 479 6.25e-79 258
MS.gene072108.t1 MTR_4g033385 36.471 425 242 9 157 562 37 452 1.68e-78 256
MS.gene072108.t1 MTR_8g103233 30.282 568 359 15 41 581 18 575 1.98e-78 259
MS.gene072108.t1 MTR_4g011280 29.285 601 378 16 8 580 4 585 5.86e-78 258
MS.gene072108.t1 MTR_8g469470 28.520 561 367 9 36 564 25 583 3.48e-76 253
MS.gene072108.t1 MTR_1g026740 28.571 546 363 8 36 559 13 553 8.16e-74 246
MS.gene072108.t1 MTR_7g064800 28.571 574 379 9 36 583 22 590 1.19e-72 244
MS.gene072108.t1 MTR_2g101590 29.720 572 367 14 39 582 25 589 1.21e-72 245
MS.gene072108.t1 MTR_2g101640 29.371 572 369 14 39 582 22 586 3.53e-72 244
MS.gene072108.t1 MTR_2g101650 29.181 562 362 15 39 573 23 575 1.08e-71 241
MS.gene072108.t1 MTR_1g026770 28.980 559 368 10 39 576 14 564 1.15e-70 238
MS.gene072108.t1 MTR_2g101610 29.174 593 379 16 18 582 11 590 2.16e-70 239
MS.gene072108.t1 MTR_2g093180 30.882 544 341 10 39 562 20 548 1.35e-69 234
MS.gene072108.t1 MTR_1g026750 29.487 546 352 10 39 559 17 554 1.53e-67 229
MS.gene072108.t1 MTR_7g098210 29.924 528 268 13 59 566 1 446 1.12e-66 224
MS.gene072108.t1 MTR_2g101560 28.866 582 374 16 18 573 11 578 1.35e-65 226
MS.gene072108.t1 MTR_2g093160 29.705 542 349 8 39 562 20 547 1.58e-65 224
MS.gene072108.t1 MTR_1g057460 28.741 588 377 17 9 571 4 574 4.61e-65 223
MS.gene072108.t1 MTR_4g024930 29.264 557 361 13 18 559 14 552 3.19e-63 218
MS.gene072108.t1 MTR_0236s0050 30.636 519 329 14 68 571 1 503 1.04e-62 215
MS.gene072108.t1 MTR_6g008690 28.752 553 340 11 44 566 11 539 1.35e-62 216
MS.gene072108.t1 MTR_1g057460 29.615 520 333 14 68 571 1 503 1.96e-62 214
MS.gene072108.t1 MTR_2g093640 27.706 545 362 9 36 562 17 547 8.94e-58 203
MS.gene072108.t1 MTR_4g033310 40.288 278 151 5 294 562 216 487 2.50e-56 197
MS.gene072108.t1 MTR_4g033310 29.730 185 117 3 23 205 14 187 6.72e-16 81.3
MS.gene072108.t1 MTR_3g065350 45.342 161 86 2 335 494 1 160 1.17e-41 148
MS.gene072108.t1 MTR_1g009170 28.822 399 212 11 167 542 9 358 1.17e-39 149
MS.gene072108.t1 MTR_7g111580 48.649 74 29 2 335 400 1 73 1.82e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072108.t1 AT1G59740 71.927 545 139 4 28 558 29 573 0.0 815
MS.gene072108.t1 AT1G33440 66.318 573 179 5 18 579 16 585 0.0 777
MS.gene072108.t1 AT1G69850 40.105 571 302 9 30 564 15 581 1.95e-131 397
MS.gene072108.t1 AT3G54140 36.491 570 335 7 18 565 2 566 8.23e-128 387
MS.gene072108.t1 AT3G54140 36.491 570 335 7 18 565 2 566 8.23e-128 387
MS.gene072108.t1 AT1G27040 39.927 551 305 9 30 561 13 556 4.11e-127 385
MS.gene072108.t1 AT1G27040 39.927 551 305 9 30 561 17 560 4.59e-127 385
MS.gene072108.t1 AT5G01180 36.649 573 327 9 18 564 3 565 1.63e-125 381
MS.gene072108.t1 AT5G01180 36.649 573 327 9 18 564 3 565 1.63e-125 381
MS.gene072108.t1 AT5G01180 36.649 573 327 9 18 564 3 565 1.63e-125 381
MS.gene072108.t1 AT1G27040 40.000 530 289 10 54 561 6 528 7.82e-118 360
MS.gene072108.t1 AT2G26690 37.653 571 334 9 18 571 2 567 1.39e-117 361
MS.gene072108.t1 AT3G25260 35.701 535 309 9 30 559 11 515 6.32e-114 349
MS.gene072108.t1 AT3G21670 36.126 573 339 8 30 582 19 584 1.60e-113 351
MS.gene072108.t1 AT2G02040 36.232 552 324 8 26 554 27 573 5.28e-113 349
MS.gene072108.t1 AT5G62730 36.106 565 312 11 26 562 42 585 3.28e-111 345
MS.gene072108.t1 AT1G62200 35.027 551 333 9 19 552 35 577 3.01e-109 340
MS.gene072108.t1 AT2G26690 37.803 537 312 9 52 571 3 534 1.40e-108 337
MS.gene072108.t1 AT3G25280 35.502 538 312 10 30 559 11 521 1.61e-108 336
MS.gene072108.t1 AT3G53960 33.733 584 358 10 13 573 10 587 1.05e-107 336
MS.gene072108.t1 AT2G26690 38.213 526 303 9 63 571 2 522 9.93e-107 332
MS.gene072108.t1 AT1G68570 35.517 580 343 10 18 571 3 577 2.33e-106 332
MS.gene072108.t1 AT1G12110 34.211 570 345 8 18 562 5 569 5.93e-106 331
MS.gene072108.t1 AT5G46050 34.188 585 356 9 18 580 5 582 5.26e-105 328
MS.gene072108.t1 AT1G62200 33.448 580 332 10 19 552 35 606 3.25e-103 325
MS.gene072108.t1 AT1G62200 33.448 580 332 10 19 552 49 620 3.38e-103 325
MS.gene072108.t1 AT5G46040 34.021 582 354 9 18 578 5 577 3.42e-103 324
MS.gene072108.t1 AT5G62730 35.596 545 302 11 46 562 3 526 6.06e-103 322
MS.gene072108.t1 AT1G68570 36.414 541 315 9 57 571 10 547 6.87e-103 323
MS.gene072108.t1 AT2G40460 33.846 585 353 11 18 580 2 574 6.63e-100 315
MS.gene072108.t1 AT2G02020 32.661 545 328 7 26 561 28 542 1.58e-99 313
MS.gene072108.t1 AT3G54450 34.173 556 314 10 37 562 9 542 1.60e-99 313
MS.gene072108.t1 AT1G69870 34.712 556 320 10 42 565 53 597 2.05e-99 315
MS.gene072108.t1 AT2G37900 32.839 539 340 9 18 542 16 546 1.11e-98 312
MS.gene072108.t1 AT1G32450 33.969 577 350 10 11 559 8 581 2.32e-97 310
MS.gene072108.t1 AT5G13400 33.039 566 347 11 26 562 49 611 2.66e-96 307
MS.gene072108.t1 AT5G19640 33.895 534 326 7 41 559 60 581 2.80e-95 304
MS.gene072108.t1 AT4G21680 34.513 565 341 10 26 564 14 575 1.58e-94 301
MS.gene072108.t1 AT1G72140 35.495 555 314 11 28 562 22 552 2.46e-94 300
MS.gene072108.t1 AT1G72130 34.347 559 324 12 19 564 7 535 7.68e-93 295
MS.gene072108.t1 AT1G22540 33.095 559 340 10 18 559 8 549 1.16e-90 290
MS.gene072108.t1 AT2G37900 34.468 470 286 9 87 542 6 467 1.50e-89 286
MS.gene072108.t1 AT3G16180 30.450 578 364 14 36 584 19 587 1.12e-85 278
MS.gene072108.t1 AT1G52190 31.065 573 358 13 39 581 20 585 3.07e-84 275
MS.gene072108.t1 AT1G18880 30.727 550 350 12 41 562 20 566 2.21e-82 270
MS.gene072108.t1 AT1G27080 32.902 541 335 11 42 562 16 548 2.28e-81 266
MS.gene072108.t1 AT5G62680 28.687 617 383 14 4 589 23 613 5.38e-81 267
MS.gene072108.t1 AT5G46050 34.034 476 285 9 127 580 2 470 8.95e-81 262
MS.gene072108.t1 AT2G02020 30.275 545 320 9 26 561 28 521 1.94e-79 260
MS.gene072108.t1 AT1G69860 31.332 533 349 8 43 562 21 549 4.20e-79 260
MS.gene072108.t1 AT1G72130 34.272 426 250 8 152 564 9 417 7.65e-77 250
MS.gene072108.t1 AT1G72130 34.272 426 250 8 152 564 9 417 7.65e-77 250
MS.gene072108.t1 AT1G22550 30.162 557 364 9 22 562 12 559 1.69e-76 253
MS.gene072108.t1 AT1G72125 31.327 565 351 12 19 562 8 556 1.77e-76 253
MS.gene072108.t1 AT1G72120 32.149 563 345 12 19 562 8 552 3.42e-76 252
MS.gene072108.t1 AT1G27080 32.812 512 316 11 71 562 3 506 5.29e-75 249
MS.gene072108.t1 AT3G47960 29.603 554 351 12 41 562 62 608 5.56e-75 251
MS.gene072108.t1 AT5G28470 28.237 556 366 9 36 562 6 557 8.00e-75 249
MS.gene072108.t1 AT5G28470 28.058 556 365 10 36 562 6 555 5.69e-72 241
MS.gene072108.t1 AT1G22570 30.249 562 335 13 12 540 1 538 5.08e-71 239
MS.gene072108.t1 AT3G45650 29.537 518 338 7 59 562 39 543 4.75e-70 236
MS.gene072108.t1 AT5G14940 28.466 541 347 8 39 553 6 532 1.01e-69 235
MS.gene072108.t1 AT3G45660 28.764 518 342 7 59 562 38 542 5.24e-69 233
MS.gene072108.t1 AT3G45660 28.764 518 342 7 59 562 38 542 5.24e-69 233
MS.gene072108.t1 AT3G45660 28.764 518 342 7 59 562 59 563 1.53e-68 233
MS.gene072108.t1 AT3G45710 28.516 512 339 8 65 562 46 544 5.01e-67 228
MS.gene072108.t1 AT3G45680 30.710 521 332 11 67 573 47 552 7.94e-66 225
MS.gene072108.t1 AT3G45720 28.656 506 333 8 67 559 46 536 9.35e-66 224
MS.gene072108.t1 AT3G45650 28.125 544 338 8 59 562 39 569 2.15e-64 222
MS.gene072108.t1 AT1G22570 29.885 522 310 12 51 540 4 501 1.13e-62 216
MS.gene072108.t1 AT3G01350 25.536 560 361 9 39 559 6 548 1.79e-59 208
MS.gene072108.t1 AT3G45700 26.984 504 346 6 67 562 43 532 3.97e-59 206
MS.gene072108.t1 AT3G45690 27.925 530 313 14 59 573 35 510 1.57e-58 204
MS.gene072108.t1 AT5G11570 27.068 532 309 10 32 557 15 473 1.31e-50 182
MS.gene072108.t1 AT2G38100 24.125 543 341 19 68 579 2 504 1.84e-25 110
MS.gene072108.t1 AT2G38100 24.125 543 341 19 68 579 18 520 3.36e-25 110
MS.gene072108.t1 AT2G38100 24.125 543 341 19 68 579 24 526 4.51e-25 109

Find 0 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACCAAATATTATGAATTG+TGG - 16926:22437-22456 None:intergenic 20.0%
!! ATTAATATTCCAATTCCAAA+GGG + 16926:20690-20709 MS.gene072108:CDS 20.0%
!! ATTCTATATAGCAATATACA+TGG + 16926:21325-21344 MS.gene072108:CDS 20.0%
!! TATTAATATTCCAATTCCAA+AGG + 16926:20689-20708 MS.gene072108:CDS 20.0%
!!! AGGTTTGTTCTTATAATATA+GGG - 16926:21594-21613 None:intergenic 20.0%
! AAAAATAGTTCCTACAAAGT+TGG - 16926:21002-21021 None:intergenic 25.0%
! AATTAATAATACGCATGATC+AGG + 16926:21848-21867 MS.gene072108:intron 25.0%
! ACAAGCAAAGATATTACTTT+CGG + 16926:22049-22068 MS.gene072108:CDS 25.0%
! ACACCACAATTCATAATATT+TGG + 16926:22431-22450 MS.gene072108:CDS 25.0%
! ATTATAGTGCATGCAAAAAT+TGG - 16926:22080-22099 None:intergenic 25.0%
! GAGATAAAATCCAAATGAAT+AGG - 16926:22555-22574 None:intergenic 25.0%
! TTGCTCTAACAATTCTTATT+TGG + 16926:21483-21502 MS.gene072108:CDS 25.0%
! TTGTAGCTGCAATATTAAAA+AGG + 16926:21874-21893 MS.gene072108:CDS 25.0%
!! ACAAATAAAGTATCATAGAG+AGG - 16926:22242-22261 None:intergenic 25.0%
!! ATTTTATCTCAGCTCATTAT+TGG + 16926:22565-22584 MS.gene072108:CDS 25.0%
!! CAAATAAAGTATCATAGAGA+GGG - 16926:22241-22260 None:intergenic 25.0%
!! GAGGTTTGTTCTTATAATAT+AGG - 16926:21595-21614 None:intergenic 25.0%
!! TGCTCTAACAATTCTTATTT+GGG + 16926:21484-21503 MS.gene072108:CDS 25.0%
ACAACGATGAGAAAAATGTA+AGG - 16926:22215-22234 None:intergenic 30.0%
ACATATTGCTCCTATTCATT+TGG + 16926:22542-22561 MS.gene072108:CDS 30.0%
ACCAAATTCTGTTTGAACTT+AGG + 16926:21766-21785 MS.gene072108:intron 30.0%
ATAGTAGTGTTTAGATTCCA+TGG - 16926:22798-22817 None:intergenic 30.0%
CGTTTATGAGATAAGTTATG+AGG - 16926:20940-20959 None:intergenic 30.0%
CTATATAGCAATATACATGG+TGG + 16926:21328-21347 MS.gene072108:CDS 30.0%
CTGATGAATGATATATGTCA+GGG + 16926:20870-20889 MS.gene072108:intron 30.0%
GTTCTAGTAAAGCAAATATG+AGG - 16926:21084-21103 None:intergenic 30.0%
TAAAGCAAATATGAGGATAG+TGG - 16926:21077-21096 None:intergenic 30.0%
TACAACATAGTGATAAGTTG+AGG + 16926:21946-21965 MS.gene072108:CDS 30.0%
TAGAAAATGTAGCCAGAAAA+AGG - 16926:22331-22350 None:intergenic 30.0%
TCTGATGAATGATATATGTC+AGG + 16926:20869-20888 MS.gene072108:intron 30.0%
TGGATTATAAGAATACCATC+TGG - 16926:22738-22757 None:intergenic 30.0%
TGTTATGGAGAAAAAGAGAA+GGG + 16926:22364-22383 MS.gene072108:CDS 30.0%
TTGTGGTGTAATCCAAAATA+TGG - 16926:22420-22439 None:intergenic 30.0%
! ACAAACTTGACCTTTTCTAT+TGG + 16926:22663-22682 MS.gene072108:CDS 30.0%
! AGCATATTTTGCATTCTCAT+TGG + 16926:21451-21470 MS.gene072108:CDS 30.0%
! GCATATTTTGCATTCTCATT+GGG + 16926:21452-21471 MS.gene072108:CDS 30.0%
! GCTACAAGCATTTGAAATAA+TGG + 16926:20892-20911 MS.gene072108:CDS 30.0%
! TATCTATCTGACTCTTTTCT+TGG + 16926:21043-21062 MS.gene072108:CDS 30.0%
!!! ACCTGTTATTTTTCTTGCAA+AGG - 16926:22267-22286 None:intergenic 30.0%
!!! CCTGTTATTTTTCTTGCAAA+GGG - 16926:22266-22285 None:intergenic 30.0%
!!! TTTTCTGGCTACATTTTCTA+TGG + 16926:22331-22350 MS.gene072108:CDS 30.0%
AAAATAACAGGTCATGAGTC+AGG + 16926:22275-22294 MS.gene072108:CDS 35.0%
AAAATCACTTCCACTTCAAG+TGG + 16926:22602-22621 MS.gene072108:CDS 35.0%
AACATAGTCACCAACTTTGT+AGG + 16926:20989-21008 MS.gene072108:CDS 35.0%
ACTTCATCAACTATCTCTTC+TGG + 16926:22711-22730 MS.gene072108:CDS 35.0%
AGCACAACTTCAAACATTCT+CGG + 16926:22115-22134 MS.gene072108:CDS 35.0%
ATGCATATGCATAATTGCAC+AGG + 16926:21196-21215 MS.gene072108:intron 35.0%
CAGCTAGTAACCAATAGAAA+AGG - 16926:22676-22695 None:intergenic 35.0%
CCCTTTGCAAGAAAAATAAC+AGG + 16926:22263-22282 MS.gene072108:CDS 35.0%
CTGTTATGGAGAAAAAGAGA+AGG + 16926:22363-22382 MS.gene072108:CDS 35.0%
GCCTAAGTTCAAACAGAATT+TGG - 16926:21770-21789 None:intergenic 35.0%
GGTTCATAAGCTTCATAAGT+GGG + 16926:21567-21586 MS.gene072108:CDS 35.0%
GTTGATCATACTTGAGCAAT+GGG - 16926:21638-21657 None:intergenic 35.0%
GTTTGTAGAAGAACTCAATG+AGG - 16926:22484-22503 None:intergenic 35.0%
TCATGAATACTACTGTTGAC+TGG + 16926:20733-20752 MS.gene072108:CDS 35.0%
TCCAAAATATGGACAGAGTT+TGG - 16926:22409-22428 None:intergenic 35.0%
TCTACAAACAGTCCTTGAAA+GGG + 16926:22495-22514 MS.gene072108:CDS 35.0%
TGAATAGGAGCAATATGTGA+TGG - 16926:22540-22559 None:intergenic 35.0%
TGCATATGCATAATTGCACA+GGG + 16926:21197-21216 MS.gene072108:intron 35.0%
TGTTGATCATACTTGAGCAA+TGG - 16926:21639-21658 None:intergenic 35.0%
TTCTACAAACAGTCCTTGAA+AGG + 16926:22494-22513 MS.gene072108:CDS 35.0%
TTGATCATACTTGAGCAATG+GGG - 16926:21637-21656 None:intergenic 35.0%
! ACCAAACTCTGTCCATATTT+TGG + 16926:22405-22424 MS.gene072108:CDS 35.0%
! ATTTGGGTTCAAACTCATTC+CGG + 16926:21500-21519 MS.gene072108:CDS 35.0%
! TAGTGATAAGTTGAGGTTCT+TGG + 16926:21953-21972 MS.gene072108:CDS 35.0%
!! AAATATGAGGATAGTGGAGA+AGG - 16926:21071-21090 None:intergenic 35.0%
!! AGAGATAGTTGATGAAGTTG+AGG - 16926:22709-22728 None:intergenic 35.0%
!! CAGCTCATTATTGGTTTCTT+TGG + 16926:22574-22593 MS.gene072108:CDS 35.0%
AAGCCCAACATGATTTCTCA+TGG + 16926:21371-21390 MS.gene072108:CDS 40.0%
AGCTCCATGAGAAATCATGT+TGG - 16926:21378-21397 None:intergenic 40.0%
AGGAGAATGCATAGAAGCAA+AGG + 16926:21286-21305 MS.gene072108:CDS 40.0%
ATAATGGCAATAGCTGCAGT+TGG + 16926:20908-20927 MS.gene072108:CDS 40.0%
ATCTCACCTTTGCAGAGAAT+AGG + 16926:22299-22318 MS.gene072108:CDS 40.0%
GAGAATGCATAGAAGCAAAG+GGG + 16926:21288-21307 MS.gene072108:CDS 40.0%
GCAATATACATGGTGGCATT+AGG + 16926:21335-21354 MS.gene072108:CDS 40.0%
GCTCCATGAGAAATCATGTT+GGG - 16926:21377-21396 None:intergenic 40.0%
GGAGAATGCATAGAAGCAAA+GGG + 16926:21287-21306 MS.gene072108:CDS 40.0%
GGGTTCATAAGCTTCATAAG+TGG + 16926:21566-21585 MS.gene072108:CDS 40.0%
GTGACTATGTTTGCAGAATG+AGG - 16926:20980-20999 None:intergenic 40.0%
TATGGTTTCAGCAGCTGTTA+TGG + 16926:22349-22368 MS.gene072108:CDS 40.0%
TCAGAGATGTTTACTGCAGT+TGG + 16926:22458-22477 MS.gene072108:CDS 40.0%
TCTAGCCTACAAATGCTACA+CGG + 16926:21912-21931 MS.gene072108:CDS 40.0%
TCTCACCTTTGCAGAGAATA+GGG + 16926:22300-22319 MS.gene072108:CDS 40.0%
TCTCCTCCTAATTTACTGCA+TGG - 16926:21272-21291 None:intergenic 40.0%
TGTAGCATTTGTAGGCTAGA+TGG - 16926:21912-21931 None:intergenic 40.0%
TTGAGAGCTTCTTTGATTGC+TGG - 16926:21418-21437 None:intergenic 40.0%
! AATACTACTGTTGACTGGAG+AGG + 16926:20738-20757 MS.gene072108:CDS 40.0%
! ATACTACTGTTGACTGGAGA+GGG + 16926:20739-20758 MS.gene072108:CDS 40.0%
! ATATGGACAGAGTTTGGTTC+AGG - 16926:22403-22422 None:intergenic 40.0%
! ATTTTTCTCATCGCACTCCT+CGG + 16926:21016-21035 MS.gene072108:CDS 40.0%
! TAAGTTGAGGTTCTTGGACA+AGG + 16926:21959-21978 MS.gene072108:CDS 40.0%
! TTTGGGTTCAAACTCATTCC+GGG + 16926:21501-21520 MS.gene072108:CDS 40.0%
! TTTTGTGACATGTGTGTCCA+TGG - 16926:22156-22175 None:intergenic 40.0%
!! ATTGCTGGTCTTGACTGAAT+TGG - 16926:21403-21422 None:intergenic 40.0%
!!! AATAGGGATTGGCCTTTTTC+TGG + 16926:22316-22335 MS.gene072108:CDS 40.0%
AAGGGAGAATCTGCAGATGA+AGG + 16926:20708-20727 MS.gene072108:CDS 45.0%
ACAAGGCTTGTGTCCAAGAT+GGG + 16926:21976-21995 MS.gene072108:CDS 45.0%
ACCGTGGTTGTTAGGATTAG+AGG - 16926:20769-20788 None:intergenic 45.0%
ACTATCTCTTCTGGTCCAGA+TGG + 16926:22720-22739 MS.gene072108:CDS 45.0%
ATCACTTCCACTTCAAGTGG+TGG + 16926:22605-22624 MS.gene072108:CDS 45.0%
ATCATACTTGAGCAATGGGG+AGG - 16926:21634-21653 None:intergenic 45.0%
ATCCCTTTCAACCATATCCC+AGG + 16926:22757-22776 MS.gene072108:CDS 45.0%
ATTGACTGAAGTGATGCTGG+AGG - 16926:22191-22210 None:intergenic 45.0%
CAACACTACACAATCTCCAC+GGG - 16926:22019-22038 None:intergenic 45.0%
CATAGAAGCAAAGGGGTTGA+AGG + 16926:21295-21314 MS.gene072108:CDS 45.0%
CCAAGATGGGAACAACACAA+AGG + 16926:21989-22008 MS.gene072108:CDS 45.0%
CCAATCCCTATTCTCTGCAA+AGG - 16926:22308-22327 None:intergenic 45.0%
CCACCACCATGCAGTAAATT+AGG + 16926:21263-21282 MS.gene072108:CDS 45.0%
CCACCATGCAGTAAATTAGG+AGG + 16926:21266-21285 MS.gene072108:CDS 45.0%
CCCTCTAATCCTAACAACCA+CGG + 16926:20765-20784 MS.gene072108:CDS 45.0%
CCGTGGTTGTTAGGATTAGA+GGG - 16926:20768-20787 None:intergenic 45.0%
CCTAATTTACTGCATGGTGG+TGG - 16926:21266-21285 None:intergenic 45.0%
CCTACAAATGCTACACGGAA+AGG + 16926:21917-21936 MS.gene072108:CDS 45.0%
CCTCCTAATTTACTGCATGG+TGG - 16926:21269-21288 None:intergenic 45.0%
CCTTTCCGTGTAGCATTTGT+AGG - 16926:21920-21939 None:intergenic 45.0%
CCTTTGCAGAGAATAGGGAT+TGG + 16926:22305-22324 MS.gene072108:CDS 45.0%
CTCCTGGGATATGGTTGAAA+GGG - 16926:22762-22781 None:intergenic 45.0%
CTTTCAACCATATCCCAGGA+GGG + 16926:22761-22780 MS.gene072108:CDS 45.0%
GAATGTCTGCATCCCTTTCA+AGG - 16926:22510-22529 None:intergenic 45.0%
GCAACACTACACAATCTCCA+CGG - 16926:22020-22039 None:intergenic 45.0%
GGAATTGACTGAAGTGATGC+TGG - 16926:22194-22213 None:intergenic 45.0%
TACATGGTGGCATTAGGAAG+TGG + 16926:21341-21360 MS.gene072108:CDS 45.0%
TCATCTGCAGATTCTCCCTT+TGG - 16926:20708-20727 None:intergenic 45.0%
TCTAATCCTAACAACCACGG+TGG + 16926:20768-20787 MS.gene072108:CDS 45.0%
TGATGAAGTTGAGGAAGCTG+AGG - 16926:22700-22719 None:intergenic 45.0%
TGGGATATGGTTGAAAGGGA+TGG - 16926:22758-22777 None:intergenic 45.0%
TTGACTGAAGTGATGCTGGA+GGG - 16926:22190-22209 None:intergenic 45.0%
! CCTTTGTGTTGTTCCCATCT+TGG - 16926:21992-22011 None:intergenic 45.0%
!! GCAGATTCTCCCTTTGGAAT+TGG - 16926:20702-20721 None:intergenic 45.0%
!!! AGAGCAGCTGCTTTTGTTCT+TGG + 16926:20795-20814 MS.gene072108:CDS 45.0%
!! TATAATAGTAATTAATAATT+AGG + 16926:21814-21833 MS.gene072108:intron 5.0%
AACTCATTCCGGGATGGATG+CGG + 16926:21511-21530 MS.gene072108:CDS 50.0%
ACAACACAAAGGAAAGCCCG+TGG + 16926:22000-22019 MS.gene072108:CDS 50.0%
ACTTCCACTTCAAGTGGTGG+TGG + 16926:22608-22627 MS.gene072108:CDS 50.0%
AGTCAGATAGATAGCCACCG+AGG - 16926:21036-21055 None:intergenic 50.0%
CAAACATTCTCGGTCCAGCA+AGG + 16926:22125-22144 MS.gene072108:CDS 50.0%
CCTCCTGGGATATGGTTGAA+AGG - 16926:22763-22782 None:intergenic 50.0%
CCTTTCAACCATATCCCAGG+AGG + 16926:22760-22779 MS.gene072108:CDS 50.0%
CTAGTTCCACCGTGGTTGTT+AGG - 16926:20777-20796 None:intergenic 50.0%
GACAAGGCTTGTGTCCAAGA+TGG + 16926:21975-21994 MS.gene072108:CDS 50.0%
GCTTATGAACCCCATTGCCA+TGG - 16926:21558-21577 None:intergenic 50.0%
GGTTCAAACTCATTCCGGGA+TGG + 16926:21505-21524 MS.gene072108:CDS 50.0%
TTGAGCAATGGGGAGGAAGA+TGG - 16926:21627-21646 None:intergenic 50.0%
!! CATGGTGGTGGCTTCAATTC+AGG - 16926:21254-21273 None:intergenic 50.0%
AACCATATCCCAGGAGGGTG+AGG + 16926:22766-22785 MS.gene072108:CDS 55.0%
AACCTCACCCTCCTGGGATA+TGG - 16926:22771-22790 None:intergenic 55.0%
ACCACCACCACCACTTGAAG+TGG - 16926:22615-22634 None:intergenic 55.0%
ACTCATTCCGGGATGGATGC+GGG + 16926:21512-21531 MS.gene072108:CDS 55.0%
ATCAGCTGCTGCCATGGCAA+TGG + 16926:21544-21563 MS.gene072108:CDS 55.0%
GCAATGGGGAGGAAGATGGT+TGG - 16926:21623-21642 None:intergenic 55.0%
TCAGCTGCTGCCATGGCAAT+GGG + 16926:21545-21564 MS.gene072108:CDS 55.0%
TGCTGTATCAGCTGCTGCCA+TGG + 16926:21538-21557 MS.gene072108:CDS 55.0%
TGTCCATGGCACTTCCTTGC+TGG - 16926:22142-22161 None:intergenic 55.0%
TTTCTCATCGCACTCCTCGG+TGG + 16926:21019-21038 MS.gene072108:CDS 55.0%
! AGGAAGATGGTTGGCTGTGG+AGG - 16926:21614-21633 None:intergenic 55.0%
!! CTTCAAGTGGTGGTGGTGGT+TGG + 16926:22615-22634 MS.gene072108:CDS 55.0%
!! TCCACTTCAAGTGGTGGTGG+TGG + 16926:22611-22630 MS.gene072108:CDS 55.0%
AGCAAAGCCCGCATCCATCC+CGG - 16926:21522-21541 None:intergenic 60.0%
CAGCTGCTGCCATGGCAATG+GGG + 16926:21546-21565 MS.gene072108:CDS 60.0%
GGAGGGTGAGGTTCATGCCA+TGG + 16926:22778-22797 MS.gene072108:CDS 60.0%
GGCATGAACCTCACCCTCCT+GGG - 16926:22777-22796 None:intergenic 60.0%
TGGCATGAACCTCACCCTCC+TGG - 16926:22778-22797 None:intergenic 60.0%
! CAGCTGCTCTAGTTCCACCG+TGG - 16926:20785-20804 None:intergenic 60.0%
! GGGAGGAAGATGGTTGGCTG+TGG - 16926:21617-21636 None:intergenic 60.0%
!! GGTCCAGCAAGGAAGTGCCA+TGG + 16926:22136-22155 MS.gene072108:CDS 60.0%


Chromosome Type Strat End Strand Name
16926 gene 20663 22844 20663 ID=MS.gene072108
16926 mRNA 20663 22844 20663 ID=MS.gene072108.t1;Parent=MS.gene072108
16926 exon 20663 20816 20663 ID=MS.gene072108.t1.exon1;Parent=MS.gene072108.t1
16926 CDS 20663 20816 20663 ID=cds.MS.gene072108.t1;Parent=MS.gene072108.t1
16926 exon 20891 21108 20891 ID=MS.gene072108.t1.exon2;Parent=MS.gene072108.t1
16926 CDS 20891 21108 20891 ID=cds.MS.gene072108.t1;Parent=MS.gene072108.t1
16926 exon 21218 21646 21218 ID=MS.gene072108.t1.exon3;Parent=MS.gene072108.t1
16926 CDS 21218 21646 21218 ID=cds.MS.gene072108.t1;Parent=MS.gene072108.t1
16926 exon 21870 22844 21870 ID=MS.gene072108.t1.exon4;Parent=MS.gene072108.t1
16926 CDS 21870 22844 21870 ID=cds.MS.gene072108.t1;Parent=MS.gene072108.t1
Gene Sequence

>MS.gene072108

ATGGATGAGGGAGGAAGTATTAATAATATTAATATTCCAATTCCAAAGGGAGAATCTGCAGATGAAGGCATCATGAATACTACTGTTGACTGGAGAGGGAGACCCTCTAATCCTAACAACCACGGTGGAACTAGAGCAGCTGCTTTTGTTCTTGGTATGTATATATATCTCTCTATTACTTACTTTGTATCTTACAATAACTATGATCTGATGAATGATATATGTCAGGGCTACAAGCATTTGAAATAATGGCAATAGCTGCAGTTGGAAACAACCTCATAACTTATCTCATAAACGAGATGCACTTCTCTTTGCCTCATTCTGCAAACATAGTCACCAACTTTGTAGGAACTATTTTTCTCATCGCACTCCTCGGTGGCTATCTATCTGACTCTTTTCTTGGCACCTTCTCCACTATCCTCATATTTGCTTTACTAGAACTTTCTGTAAGTAGTAGTCATCTCATCATCACATTCACATATGTATTAATTAATTAATTCGACTGAATAATTAATTTGATATATATACTATGCATGCATATGCATAATTGCACAGGGTTTCATTTTGCTGTCAGCACAAGCTCATTTTCCTGAATTGAAGCCACCACCATGCAGTAAATTAGGAGGAGAATGCATAGAAGCAAAGGGGTTGAAGGCGTTGATATTCTATATAGCAATATACATGGTGGCATTAGGAAGTGGTTGTGTTAAGCCCAACATGATTTCTCATGGAGCTCACCAATTCAGTCAAGACCAGCAATCAAAGAAGCTCTCAACTTACTTCAATGCAGCATATTTTGCATTCTCATTGGGTGAACTTGTTGCTCTAACAATTCTTATTTGGGTTCAAACTCATTCCGGGATGGATGCGGGCTTTGCTGTATCAGCTGCTGCCATGGCAATGGGGTTCATAAGCTTCATAAGTGGGACCCTATATTATAAGAACAAACCTCCACAGCCAACCATCTTCCTCCCCATTGCTCAAGTATGATCAACATTTCATATCTAATTTATCTTTTCAAATATAGTATATATCAATGAATTGTCTTCTGTAAAATTAAGCTACTATAGAAATTTCTTATAATCAAGTTAATCTTCATATGTACCAAATTCTGTTTGAACTTAGGCATGAATCGATGTCTATTATGATTATATAATAGTAATTAATAATTAGGATCATTCAGTAAATTAATAATACGCATGATCAGGTTTTTGTAGCTGCAATATTAAAAAGGAAGAAGATTTGTCCATCTAGCCTACAAATGCTACACGGAAAGGAAAACATACAACATAGTGATAAGTTGAGGTTCTTGGACAAGGCTTGTGTCCAAGATGGGAACAACACAAAGGAAAGCCCGTGGAGATTGTGTAGTGTTGCACAAGTTGAACAAGCAAAGATATTACTTTCGGTTATTCCAATTTTTGCATGCACTATAATTTTCAACACTATCTTAGCACAACTTCAAACATTCTCGGTCCAGCAAGGAAGTGCCATGGACACACATGTCACAAAATCATTTCATATCCCTCCAGCATCACTTCAGTCAATTCCTTACATTTTTCTCATCGTTGTAGTCCCTCTCTATGATACTTTATTTGTTCCCTTTGCAAGAAAAATAACAGGTCATGAGTCAGGAATCTCACCTTTGCAGAGAATAGGGATTGGCCTTTTTCTGGCTACATTTTCTATGGTTTCAGCAGCTGTTATGGAGAAAAAGAGAAGGGATGCAGCTGTGAACCTGAACCAAACTCTGTCCATATTTTGGATTACACCACAATTCATAATATTTGGTTTGTCAGAGATGTTTACTGCAGTTGGCCTCATTGAGTTCTTCTACAAACAGTCCTTGAAAGGGATGCAGACATTCTTCACTGCCATCACATATTGCTCCTATTCATTTGGATTTTATCTCAGCTCATTATTGGTTTCTTTGGTTAATAAAATCACTTCCACTTCAAGTGGTGGTGGTGGTTGGCTTCATGACAACAATCTGAACAAAGACAAACTTGACCTTTTCTATTGGTTACTAGCTGTCCTCAGCTTCCTCAACTTCATCAACTATCTCTTCTGGTCCAGATGGTATTCTTATAATCCATCCCTTTCAACCATATCCCAGGAGGGTGAGGTTCATGCCATGGAATCTAAACACTACTATGTATCAGCAGCAGACAATATTCCATAG

Protein sequence

>MS.gene072108.t1

MDEGGSINNINIPIPKGESADEGIMNTTVDWRGRPSNPNNHGGTRAAAFVLGLQAFEIMAIAAVGNNLITYLINEMHFSLPHSANIVTNFVGTIFLIALLGGYLSDSFLGTFSTILIFALLELSGFILLSAQAHFPELKPPPCSKLGGECIEAKGLKALIFYIAIYMVALGSGCVKPNMISHGAHQFSQDQQSKKLSTYFNAAYFAFSLGELVALTILIWVQTHSGMDAGFAVSAAAMAMGFISFISGTLYYKNKPPQPTIFLPIAQVFVAAILKRKKICPSSLQMLHGKENIQHSDKLRFLDKACVQDGNNTKESPWRLCSVAQVEQAKILLSVIPIFACTIIFNTILAQLQTFSVQQGSAMDTHVTKSFHIPPASLQSIPYIFLIVVVPLYDTLFVPFARKITGHESGISPLQRIGIGLFLATFSMVSAAVMEKKRRDAAVNLNQTLSIFWITPQFIIFGLSEMFTAVGLIEFFYKQSLKGMQTFFTAITYCSYSFGFYLSSLLVSLVNKITSTSSGGGGWLHDNNLNKDKLDLFYWLLAVLSFLNFINYLFWSRWYSYNPSLSTISQEGEVHAMESKHYYVSAADNIP