AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41062


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41062.t1 MTR_1g057460 94.251 574 32 1 1 573 1 574 0.0 1111
MS.gene41062.t1 MTR_1g057460 94.235 503 29 0 71 573 1 503 0.0 975
MS.gene41062.t1 MTR_0236s0050 93.241 503 34 0 71 573 1 503 0.0 938
MS.gene41062.t1 MTR_2g101640 73.205 571 132 6 23 572 1 571 0.0 845
MS.gene41062.t1 MTR_2g101610 69.739 575 149 6 23 572 1 575 0.0 809
MS.gene41062.t1 MTR_2g101590 69.686 574 150 6 23 572 1 574 0.0 808
MS.gene41062.t1 MTR_2g101560 66.609 575 167 5 23 572 1 575 0.0 755
MS.gene41062.t1 MTR_4g011280 66.373 568 168 6 19 568 12 574 0.0 753
MS.gene41062.t1 MTR_2g101650 56.786 560 222 5 34 573 14 573 0.0 637
MS.gene41062.t1 MTR_8g103233 45.826 563 284 9 28 572 2 561 1.00e-170 497
MS.gene41062.t1 MTR_1g026740 44.834 542 277 6 44 566 18 556 1.25e-167 488
MS.gene41062.t1 MTR_1g009200 49.094 552 260 7 41 573 25 574 2.90e-167 488
MS.gene41062.t1 MTR_1g026750 45.961 557 279 7 32 569 7 560 2.90e-162 474
MS.gene41062.t1 MTR_1g026770 44.771 545 278 7 44 569 16 556 5.76e-156 458
MS.gene41062.t1 MTR_5g038060 34.380 573 340 10 17 563 12 574 1.71e-116 358
MS.gene41062.t1 MTR_4g107510 36.250 560 326 11 32 563 25 581 3.21e-114 352
MS.gene41062.t1 MTR_4g107580 34.321 574 333 13 23 563 8 570 2.96e-111 345
MS.gene41062.t1 MTR_5g055000 35.584 548 322 10 41 563 16 557 2.48e-110 342
MS.gene41062.t1 MTR_4g107530 35.935 551 324 10 40 563 30 578 4.22e-110 342
MS.gene41062.t1 MTR_8g469480 34.191 544 329 9 46 563 41 581 1.28e-105 330
MS.gene41062.t1 MTR_7g088790 32.456 570 346 14 21 563 12 569 3.10e-104 327
MS.gene41062.t1 MTR_3g462710 35.398 565 336 12 23 563 1 560 1.62e-102 321
MS.gene41062.t1 MTR_7g088825 31.497 581 360 15 23 573 1 573 2.11e-101 319
MS.gene41062.t1 MTR_5g038190 30.948 559 356 10 32 563 10 565 7.29e-98 309
MS.gene41062.t1 MTR_4g015080 35.175 543 326 11 41 563 32 568 1.14e-95 303
MS.gene41062.t1 MTR_7g088820 31.103 553 347 11 38 563 20 565 2.02e-95 303
MS.gene41062.t1 MTR_8g469470 32.668 551 341 11 41 563 30 578 3.06e-95 303
MS.gene41062.t1 MTR_7g067010 34.650 557 333 13 25 557 3 552 5.64e-94 299
MS.gene41062.t1 MTR_3g112460 31.786 560 341 14 20 560 9 546 1.03e-87 283
MS.gene41062.t1 MTR_4g107610 31.227 538 342 12 42 556 30 562 2.48e-86 280
MS.gene41062.t1 MTR_1g009170 38.810 420 185 10 157 565 5 363 4.63e-85 270
MS.gene41062.t1 MTR_3g112470 32.143 560 339 15 20 560 9 546 5.80e-85 275
MS.gene41062.t1 MTR_3g462710 36.404 456 264 10 129 563 1 451 8.92e-85 271
MS.gene41062.t1 MTR_7g088820 30.693 505 315 12 86 563 7 503 1.77e-83 270
MS.gene41062.t1 MTR_5g012270 31.729 561 328 16 41 563 26 569 2.01e-82 269
MS.gene41062.t1 MTR_4g019580 31.746 567 350 15 22 563 12 566 2.03e-81 266
MS.gene41062.t1 MTR_3g005010 30.970 536 334 10 41 563 28 540 3.32e-81 265
MS.gene41062.t1 MTR_4g033315 32.182 550 339 14 31 563 18 550 6.89e-81 264
MS.gene41062.t1 MTR_4g033310 32.182 550 339 14 31 563 18 550 6.89e-81 264
MS.gene41062.t1 MTR_3g069500 29.585 578 384 10 9 573 1 568 2.07e-80 264
MS.gene41062.t1 MTR_7g065080 30.919 566 360 13 17 563 2 555 3.68e-80 263
MS.gene41062.t1 MTR_7g064800 29.908 545 355 11 38 557 21 563 6.67e-80 263
MS.gene41062.t1 MTR_3g112450 30.998 571 353 14 13 563 2 551 1.76e-79 261
MS.gene41062.t1 MTR_7g064780 29.021 572 372 13 9 557 1 561 1.77e-79 261
MS.gene41062.t1 MTR_4g033325 31.720 558 339 12 23 563 16 548 2.41e-79 260
MS.gene41062.t1 MTR_2g093160 32.793 555 333 14 30 563 9 544 2.71e-79 260
MS.gene41062.t1 MTR_3g014790 32.136 557 323 13 35 560 9 541 1.07e-78 258
MS.gene41062.t1 MTR_0294s0020 30.991 555 345 11 23 563 16 546 1.81e-77 255
MS.gene41062.t1 MTR_3g069440 30.986 568 360 13 29 573 18 576 1.71e-76 253
MS.gene41062.t1 MTR_4g033330 31.836 512 316 12 52 548 40 533 8.03e-76 250
MS.gene41062.t1 MTR_7g088820 31.306 444 278 10 140 563 19 455 1.29e-75 248
MS.gene41062.t1 MTR_7g065080 31.667 480 300 11 100 563 1 468 2.31e-75 248
MS.gene41062.t1 MTR_7g005930 30.939 543 344 12 42 563 34 566 4.29e-75 249
MS.gene41062.t1 MTR_2g093180 33.514 555 330 13 30 563 9 545 6.02e-75 248
MS.gene41062.t1 MTR_7g006540 31.598 557 331 15 45 563 65 609 8.80e-75 250
MS.gene41062.t1 MTR_2g093640 33.094 556 330 15 30 563 9 544 2.61e-74 246
MS.gene41062.t1 MTR_2g017750 29.078 564 363 12 45 573 36 597 4.85e-74 247
MS.gene41062.t1 MTR_3g069420 30.329 577 365 12 12 563 2 566 1.07e-73 246
MS.gene41062.t1 MTR_1g116930 29.573 585 371 13 13 573 2 569 1.52e-73 246
MS.gene41062.t1 MTR_4g114340 31.826 553 355 11 31 565 10 558 5.46e-73 244
MS.gene41062.t1 MTR_5g014150 28.028 578 384 12 10 563 16 585 1.27e-72 244
MS.gene41062.t1 MTR_7g098200 30.451 532 329 12 52 560 38 551 1.72e-72 243
MS.gene41062.t1 MTR_7g098200 30.018 553 342 13 52 573 38 576 4.52e-72 242
MS.gene41062.t1 MTR_8g038880 31.752 548 335 10 33 557 10 541 3.74e-71 239
MS.gene41062.t1 MTR_4g101380 30.175 570 353 16 26 560 8 567 1.43e-70 238
MS.gene41062.t1 MTR_5g085850 29.228 544 358 9 41 569 28 559 1.64e-70 238
MS.gene41062.t1 MTR_1g085090 28.901 564 374 13 24 573 3 553 1.70e-70 238
MS.gene41062.t1 MTR_8g087810 31.507 584 357 18 25 568 2 582 3.05e-70 237
MS.gene41062.t1 MTR_5g012290 30.123 571 343 17 32 563 14 567 6.96e-70 236
MS.gene41062.t1 MTR_4g033375 31.434 509 320 11 16 509 2 496 7.34e-70 234
MS.gene41062.t1 MTR_8g087780 31.010 574 357 16 25 563 2 571 1.86e-69 235
MS.gene41062.t1 MTR_7g111260 29.496 556 368 12 28 569 4 549 2.46e-69 234
MS.gene41062.t1 MTR_7g098230 30.263 532 326 14 57 558 40 556 4.65e-69 234
MS.gene41062.t1 MTR_3g100980 30.877 570 346 14 31 569 2 554 1.88e-68 231
MS.gene41062.t1 MTR_1g075440 30.261 575 352 17 22 563 5 563 2.05e-68 232
MS.gene41062.t1 MTR_7g098040 29.947 561 349 15 42 572 32 578 2.72e-68 232
MS.gene41062.t1 MTR_3g072300 29.554 538 341 15 52 563 33 558 3.23e-68 231
MS.gene41062.t1 MTR_7g013270 29.670 546 349 13 42 563 89 623 1.21e-67 231
MS.gene41062.t1 MTR_7g098160 29.745 548 343 13 42 560 31 565 1.45e-67 230
MS.gene41062.t1 MTR_7g098090 28.866 582 359 15 21 560 2 570 5.00e-67 229
MS.gene41062.t1 MTR_4g033325 30.719 459 285 9 120 563 10 450 5.69e-67 225
MS.gene41062.t1 MTR_4g098800 28.272 573 369 17 22 560 5 569 9.37e-67 228
MS.gene41062.t1 MTR_1g042310 29.494 573 358 17 23 563 3 561 1.15e-65 225
MS.gene41062.t1 MTR_4g098800 29.323 532 344 15 53 560 111 634 1.38e-65 226
MS.gene41062.t1 MTR_4g033395 30.512 508 312 11 26 511 10 498 2.40e-65 221
MS.gene41062.t1 MTR_1g041875 30.403 546 339 16 26 546 11 540 5.13e-65 223
MS.gene41062.t1 MTR_3g100980 29.766 598 344 16 31 569 2 582 1.93e-64 221
MS.gene41062.t1 MTR_2g005130 28.741 588 377 14 4 573 9 572 2.42e-64 221
MS.gene41062.t1 MTR_7g098220 29.946 551 344 10 42 563 28 565 2.57e-64 221
MS.gene41062.t1 MTR_7g098180 29.983 577 357 15 17 560 2 564 2.83e-64 221
MS.gene41062.t1 MTR_4g033385 29.801 453 282 8 128 563 16 449 4.05e-64 217
MS.gene41062.t1 MTR_1g042310 30.451 532 323 16 63 563 2 517 7.35e-64 219
MS.gene41062.t1 MTR_1g042310 30.451 532 323 16 63 563 9 524 9.16e-64 219
MS.gene41062.t1 MTR_4g033325 30.296 439 274 8 140 563 3 424 1.08e-63 215
MS.gene41062.t1 MTR_1g041885 29.528 508 318 15 63 546 2 493 2.61e-62 214
MS.gene41062.t1 MTR_7g098220 29.868 529 330 9 63 563 6 521 2.65e-62 215
MS.gene41062.t1 MTR_1g041815 28.947 570 364 13 22 563 5 561 1.40e-60 211
MS.gene41062.t1 MTR_4g107670 28.007 557 347 15 44 562 25 565 3.35e-60 210
MS.gene41062.t1 MTR_1g041835 28.947 570 364 14 22 563 5 561 4.46e-60 209
MS.gene41062.t1 MTR_7g010820 29.175 521 327 15 53 541 36 546 2.72e-58 205
MS.gene41062.t1 MTR_5g038380 27.116 579 368 13 22 562 6 568 3.53e-58 204
MS.gene41062.t1 MTR_4g123537 28.947 570 362 17 13 563 22 567 4.06e-58 205
MS.gene41062.t1 MTR_7g098200 29.688 448 283 10 145 573 28 462 2.51e-56 197
MS.gene41062.t1 MTR_8g469310 27.419 558 347 15 44 562 27 565 1.74e-53 191
MS.gene41062.t1 MTR_6g008690 27.820 532 329 14 66 566 30 537 9.84e-53 189
MS.gene41062.t1 MTR_4g033310 29.321 324 204 7 252 563 176 486 3.81e-43 161
MS.gene41062.t1 MTR_4g033310 37.989 179 107 4 31 208 18 193 2.94e-18 88.2
MS.gene41062.t1 MTR_7g098150 28.472 432 272 12 42 450 31 448 6.07e-43 160
MS.gene41062.t1 MTR_7g098210 26.448 518 270 14 65 558 4 434 1.18e-40 153
MS.gene41062.t1 MTR_7g052600 23.929 560 379 14 15 563 2 525 5.36e-37 144
MS.gene41062.t1 MTR_7g051880 24.361 509 335 13 70 563 52 525 2.19e-34 137
MS.gene41062.t1 MTR_4g024930 24.584 541 360 15 45 563 38 552 4.38e-33 134
MS.gene41062.t1 MTR_7g051830 23.393 560 382 14 15 563 2 525 1.59e-32 131
MS.gene41062.t1 MTR_8g091265 41.284 109 58 4 301 405 3 109 2.14e-17 79.7
MS.gene41062.t1 MTR_3g065350 30.380 158 106 3 343 497 1 157 3.07e-15 73.9
MS.gene41062.t1 MTR_4g033390 31.915 94 59 2 481 569 30 123 5.92e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41062.t1 AT1G52190 49.488 586 259 9 12 572 2 575 0.0 591
MS.gene41062.t1 AT3G16180 51.761 568 247 11 32 573 9 575 0.0 588
MS.gene41062.t1 AT5G11570 38.139 548 252 12 32 564 2 477 3.67e-111 340
MS.gene41062.t1 AT1G69870 34.501 571 336 14 32 573 44 605 8.22e-111 344
MS.gene41062.t1 AT1G62200 36.475 573 331 14 9 559 20 581 1.22e-107 335
MS.gene41062.t1 AT1G68570 35.294 578 337 11 15 565 2 569 3.10e-107 334
MS.gene41062.t1 AT2G02040 35.677 569 331 16 21 563 19 578 5.96e-104 325
MS.gene41062.t1 AT1G27080 32.734 556 345 12 40 573 11 559 1.29e-102 322
MS.gene41062.t1 AT1G62200 35.333 600 330 15 9 559 20 610 1.73e-102 323
MS.gene41062.t1 AT5G62680 33.833 600 358 13 8 572 5 600 3.44e-102 322
MS.gene41062.t1 AT1G62200 35.333 600 330 15 9 559 34 624 3.54e-102 322
MS.gene41062.t1 AT1G18880 33.088 544 336 8 46 563 22 563 1.28e-99 314
MS.gene41062.t1 AT3G54140 34.735 547 325 14 41 563 22 560 3.55e-97 307
MS.gene41062.t1 AT3G54140 34.735 547 325 14 41 563 22 560 3.55e-97 307
MS.gene41062.t1 AT1G68570 34.944 538 320 10 55 565 5 539 1.72e-96 305
MS.gene41062.t1 AT3G47960 32.705 584 357 12 11 563 27 605 1.87e-96 307
MS.gene41062.t1 AT1G27080 32.634 524 324 12 72 573 1 517 1.65e-94 299
MS.gene41062.t1 AT5G01180 33.524 525 326 8 52 557 34 554 2.98e-92 294
MS.gene41062.t1 AT5G01180 33.524 525 326 8 52 557 34 554 2.98e-92 294
MS.gene41062.t1 AT5G01180 33.524 525 326 8 52 557 34 554 2.98e-92 294
MS.gene41062.t1 AT5G28470 31.844 537 340 12 41 556 15 546 1.79e-89 287
MS.gene41062.t1 AT2G02020 32.902 541 305 13 41 563 40 540 3.54e-87 280
MS.gene41062.t1 AT3G45650 33.094 556 329 12 30 563 6 540 4.27e-87 281
MS.gene41062.t1 AT5G28470 31.657 537 339 13 41 556 15 544 1.66e-86 279
MS.gene41062.t1 AT3G45650 31.615 582 329 13 30 563 6 566 1.39e-81 267
MS.gene41062.t1 AT3G45660 31.250 560 337 13 24 563 8 539 3.95e-80 262
MS.gene41062.t1 AT3G45660 31.250 560 337 13 24 563 8 539 3.95e-80 262
MS.gene41062.t1 AT3G45660 31.250 560 337 13 24 563 29 560 8.02e-80 262
MS.gene41062.t1 AT3G45710 30.741 553 347 12 30 563 6 541 5.60e-79 259
MS.gene41062.t1 AT3G54450 30.855 538 337 9 41 557 10 533 1.06e-78 258
MS.gene41062.t1 AT3G45680 32.734 556 334 13 24 563 8 539 1.75e-78 258
MS.gene41062.t1 AT2G26690 32.305 551 352 12 32 565 11 557 1.85e-78 258
MS.gene41062.t1 AT3G45720 31.115 556 340 13 24 563 9 537 3.66e-78 257
MS.gene41062.t1 AT1G72125 31.327 565 352 12 20 563 4 553 1.90e-76 253
MS.gene41062.t1 AT1G69860 31.588 554 345 13 31 563 6 546 2.69e-76 252
MS.gene41062.t1 AT2G26690 32.061 524 337 10 57 565 5 524 1.19e-75 250
MS.gene41062.t1 AT2G26690 32.171 516 331 10 65 565 1 512 5.79e-75 248
MS.gene41062.t1 AT3G53960 29.514 576 367 16 13 563 9 570 2.30e-74 248
MS.gene41062.t1 AT3G45700 30.660 561 343 14 30 573 6 537 9.48e-74 245
MS.gene41062.t1 AT5G13400 30.939 543 339 9 45 557 66 602 3.81e-73 246
MS.gene41062.t1 AT2G37900 28.421 570 380 15 9 560 1 560 5.52e-73 244
MS.gene41062.t1 AT1G22540 31.250 544 331 11 41 563 28 549 2.05e-71 239
MS.gene41062.t1 AT1G72130 30.741 540 325 14 41 563 23 530 1.07e-70 237
MS.gene41062.t1 AT1G32450 28.049 574 382 12 20 565 13 583 1.50e-70 238
MS.gene41062.t1 AT2G37900 29.876 482 313 13 94 560 10 481 4.09e-70 234
MS.gene41062.t1 AT1G22570 30.325 554 339 12 19 544 4 538 7.04e-70 235
MS.gene41062.t1 AT2G02020 30.556 540 298 15 41 563 40 519 1.27e-69 234
MS.gene41062.t1 AT1G22550 29.562 548 342 10 41 563 28 556 4.53e-69 233
MS.gene41062.t1 AT1G12110 30.796 565 346 15 32 563 14 566 2.41e-68 232
MS.gene41062.t1 AT5G46050 29.369 555 349 13 21 546 4 544 2.64e-68 231
MS.gene41062.t1 AT1G59740 29.965 574 365 15 10 560 12 571 3.46e-68 231
MS.gene41062.t1 AT1G72140 29.361 579 331 16 20 563 16 551 4.58e-67 228
MS.gene41062.t1 AT1G22570 30.545 514 312 11 57 544 7 501 1.72e-66 225
MS.gene41062.t1 AT5G46040 29.496 556 347 13 21 546 4 544 1.88e-66 227
MS.gene41062.t1 AT3G21670 28.972 535 355 9 40 558 25 550 2.88e-66 226
MS.gene41062.t1 AT4G21680 28.102 548 358 13 45 563 30 570 3.43e-66 226
MS.gene41062.t1 AT1G72120 29.806 567 354 13 20 563 4 549 7.63e-66 224
MS.gene41062.t1 AT1G33440 29.562 548 351 11 39 563 32 567 1.19e-65 225
MS.gene41062.t1 AT1G27040 29.735 565 349 13 27 562 10 555 1.69e-65 224
MS.gene41062.t1 AT1G27040 29.735 565 349 13 27 562 6 551 2.52e-65 223
MS.gene41062.t1 AT2G40460 28.205 546 349 13 52 573 33 559 2.19e-62 216
MS.gene41062.t1 AT5G19640 29.151 542 344 15 45 565 61 583 2.93e-62 216
MS.gene41062.t1 AT5G14940 29.650 543 343 13 41 558 5 533 3.18e-62 214
MS.gene41062.t1 AT1G27040 30.037 536 328 12 55 562 7 523 6.18e-62 213
MS.gene41062.t1 AT5G46050 30.641 421 264 9 142 546 24 432 6.82e-57 198
MS.gene41062.t1 AT3G01350 27.748 555 355 14 41 561 5 547 1.23e-56 200
MS.gene41062.t1 AT3G45690 28.623 559 318 17 21 563 3 496 7.72e-56 196
MS.gene41062.t1 AT5G62730 27.923 573 354 16 22 562 34 579 1.34e-55 197
MS.gene41062.t1 AT1G72130 31.336 434 256 11 145 563 6 412 3.60e-54 189
MS.gene41062.t1 AT1G72130 31.336 434 256 11 145 563 6 412 3.60e-54 189
MS.gene41062.t1 AT5G62730 28.336 547 334 15 47 562 1 520 4.14e-54 192
MS.gene41062.t1 AT1G69850 28.061 588 360 20 22 562 2 573 2.52e-52 188
MS.gene41062.t1 AT3G25260 26.087 529 344 13 44 562 21 512 2.77e-51 184
MS.gene41062.t1 AT3G25280 24.851 503 336 12 70 562 48 518 2.82e-40 154
MS.gene41062.t1 AT2G38100 24.046 524 326 21 71 563 2 484 1.38e-22 101
MS.gene41062.t1 AT2G38100 24.046 524 326 21 71 563 24 506 1.75e-22 101
MS.gene41062.t1 AT2G38100 24.046 524 326 21 71 563 18 500 1.88e-22 101

Find 114 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGTTGCTGCTTCGCTTTC+TGG 0.093260 1.3:-42050466 MS.gene41062:CDS
CTGTGTAATAAAACTCATTT+TGG 0.134879 1.3:+42050509 None:intergenic
GAACAAAGCTTGTGTTATTA+AGG 0.192435 1.3:-42051031 MS.gene41062:CDS
TCCAAGACCCTATTGTTATT+AGG 0.209799 1.3:+42051459 None:intergenic
CCAAGACCCTATTGTTATTA+GGG 0.240592 1.3:+42051460 None:intergenic
GCTGCTTCGCTTTCTGGATT+AGG 0.245582 1.3:-42050460 MS.gene41062:CDS
TTTGGTTGGGAAATTGGTTT+TGG 0.246649 1.3:-42051354 MS.gene41062:CDS
CTAGTTTGCAGTTGGGCTTA+TGG 0.253488 1.3:-42050271 MS.gene41062:CDS
TTCTTTGCACTGATCGTAAC+TGG 0.278436 1.3:+42050700 None:intergenic
AGGTTCTGCTGTCAGTTTCC+TGG 0.294557 1.3:-42052481 MS.gene41062:intron
GTATATATCCAAGATCATTT+TGG 0.295506 1.3:-42051372 MS.gene41062:CDS
AAATGCGAACGATGGTGTTT+TGG 0.307442 1.3:-42050602 MS.gene41062:CDS
TTGTGAGAGTTATTCCATTA+TGG 0.321111 1.3:-42050921 MS.gene41062:CDS
ATCACTATGCCTTTCATCAT+TGG 0.325217 1.3:-42055491 MS.gene41062:intron
AAGATAACCCTAATAACAAT+AGG 0.342050 1.3:-42051467 MS.gene41062:CDS
ATATAGGTACGGTAATTATA+TGG 0.342184 1.3:-42050777 MS.gene41062:CDS
ATCTACTGTGCATAGATTCC+AGG 0.353747 1.3:+42050966 None:intergenic
GACAAGGAAGCTCAATATTC+AGG 0.363454 1.3:-42055563 MS.gene41062:CDS
TTTAGTCTCATGTCAATTGC+AGG 0.365344 1.3:-42051540 MS.gene41062:CDS
TGATTGGGATATTCATCATC+TGG 0.366154 1.3:+42055593 None:intergenic
TTTCCCAACCAAAATGATCT+TGG 0.368253 1.3:+42051364 None:intergenic
GCTTGCACCTCAACTTTGTC+TGG 0.381207 1.3:-42050563 MS.gene41062:CDS
CCTTTAGCATCGAAGATAAG+AGG 0.383147 1.3:-42050727 MS.gene41062:CDS
AACCACAGGCATGAACTTGC+TGG 0.394025 1.3:+42052554 None:intergenic
AGACCACCCTTGCTTCTTTG+TGG 0.396099 1.3:+42055515 None:intergenic
CGATTCTTAAGTGTTGGATT+AGG 0.396315 1.3:-42052501 MS.gene41062:CDS
GTTTCATGTTCCATGGCATT+TGG 0.404377 1.3:-42051510 MS.gene41062:CDS
ATCAAATACAATATCATGTT+GGG 0.404738 1.3:+42052636 None:intergenic
GCAAAGAAAAGAATGGGAAT+TGG 0.406768 1.3:-42050685 MS.gene41062:CDS
TTTGTTGCAGATTCTTATCT+CGG 0.407995 1.3:-42052525 MS.gene41062:CDS
CTCGGTCGATTCTTAAGTGT+TGG 0.411486 1.3:-42052507 MS.gene41062:CDS
CCTCTTATCTTCGATGCTAA+AGG 0.412800 1.3:+42050727 None:intergenic
GGACCTTTCAAGCTTCATCT+TGG 0.414516 1.3:-42052612 MS.gene41062:CDS
CCCTAATAACAATAGGGTCT+TGG 0.418911 1.3:-42051460 MS.gene41062:CDS
CTATTATCTAGTTTGCAGTT+GGG 0.424374 1.3:-42050278 MS.gene41062:CDS
CAACATGATATTGTATTTGA+TGG 0.424400 1.3:-42052634 MS.gene41062:CDS
TCTTTGAGCGTTATCAATAT+AGG 0.428181 1.3:-42050793 MS.gene41062:CDS
TCTGAAGCAGTCAATTTCAT+AGG 0.436089 1.3:-42050532 MS.gene41062:CDS
GCACCTCAACTTTGTCTGGC+TGG 0.437194 1.3:-42050559 MS.gene41062:CDS
TCTATTATCTAGTTTGCAGT+TGG 0.444992 1.3:-42050279 MS.gene41062:CDS
ATGATCCCACTAGACCATAA+TGG 0.450318 1.3:+42050907 None:intergenic
TGCTGGCTGCAGCAGATAAG+AGG 0.457100 1.3:+42052571 None:intergenic
ATCACCAACATCATGGGAAA+TGG 0.460646 1.3:-42051580 MS.gene41062:CDS
GGAGGTGATATGTCTGTTCA+AGG 0.462389 1.3:+42050837 None:intergenic
ATCAGTGCAAAGAAAAGAAT+GGG 0.469148 1.3:-42050691 MS.gene41062:CDS
AGATAACCCTAATAACAATA+GGG 0.471415 1.3:-42051466 MS.gene41062:CDS
CGCTGGAACTTCAAAGTTGG+AGG 0.472600 1.3:+42050819 None:intergenic
TTCAGGTGATGCTGATGAAA+TGG 0.473624 1.3:-42055546 MS.gene41062:CDS
GATCAGTGCAAAGAAAAGAA+TGG 0.478546 1.3:-42050692 MS.gene41062:CDS
ACCTACCTTAGTTTATCAGT+TGG 0.486210 1.3:+42051129 None:intergenic
TCTGGATCTTCTTGTTGCAA+TGG 0.487003 1.3:+42055611 None:intergenic
ACTTCAAGAGGAGGAAATGA+TGG 0.487305 1.3:-42050382 MS.gene41062:CDS
GCGATCAATCACCAACATCA+TGG 0.496498 1.3:-42051587 MS.gene41062:CDS
TTCGCTTTCTGGATTAGGAA+TGG 0.499406 1.3:-42050455 MS.gene41062:CDS
CTCATGTCAATTGCAGGTGC+TGG 0.499541 1.3:-42051534 MS.gene41062:CDS
TGCTGGTGTTTCATGTTCCA+TGG 0.501696 1.3:-42051517 MS.gene41062:CDS
AGGAATGGCTGCAGGAAGCT+TGG 0.503502 1.3:-42050440 MS.gene41062:CDS
AAGTACTCTTGGCTTATAGC+TGG 0.504830 1.3:-42050322 MS.gene41062:CDS
TTAGTTAACTCTTCAACTGC+AGG 0.507601 1.3:+42050247 None:intergenic
CTTGGCAATACTGCAAGCTT+AGG 0.510734 1.3:-42052666 MS.gene41062:CDS
ATGATGACCCTTAGCATTGG+AGG 0.512129 1.3:-42050886 MS.gene41062:CDS
TCCCGCTGGAACTTCAAAGT+TGG 0.516812 1.3:+42050816 None:intergenic
CATCAAATACAATATCATGT+TGG 0.523970 1.3:+42052635 None:intergenic
GCAACACTAGACATAGTACT+TGG 0.530889 1.3:+42050481 None:intergenic
AACATGATATTGTATTTGAT+GGG 0.530924 1.3:-42052633 MS.gene41062:CDS
TCTCCAAGATGAAGCTTGAA+AGG 0.532522 1.3:+42052609 None:intergenic
GTTATTCCATTATGGTCTAG+TGG 0.537272 1.3:-42050913 MS.gene41062:CDS
CGCAAAACTAGCGAACAAGT+TGG 0.540410 1.3:+42051251 None:intergenic
CGATCAATCACCAACATCAT+GGG 0.540764 1.3:-42051586 MS.gene41062:CDS
AAAATGAGCCTCCAATGCTA+AGG 0.543292 1.3:+42050878 None:intergenic
ATGGTTCAAGAATAAACCCC+TGG 0.543754 1.3:-42050984 MS.gene41062:CDS
GTGATTGTTTGCAGCAAATG+AGG 0.544320 1.3:-42052691 MS.gene41062:intron
TGCAATTGACATGAGACTAA+AGG 0.550395 1.3:+42051542 None:intergenic
TGGTTCCAACTGATAAACTA+AGG 0.551260 1.3:-42051134 MS.gene41062:intron
CTTTAGCATCGAAGATAAGA+GGG 0.558229 1.3:-42050726 MS.gene41062:CDS
TCTGGATTAGGAATGGCTGC+AGG 0.559407 1.3:-42050448 MS.gene41062:CDS
TTTGCAGCAAATGAGGCACT+TGG 0.561736 1.3:-42052684 MS.gene41062:intron
ATCATGATGACCCTTAGCAT+TGG 0.562857 1.3:-42050889 MS.gene41062:CDS
TTCTCAACCACAAAGAAGCA+AGG 0.563827 1.3:-42055522 MS.gene41062:CDS
TTATTCCATTATGGTCTAGT+GGG 0.564458 1.3:-42050912 MS.gene41062:CDS
TCTACTGTGCATAGATTCCA+GGG 0.566589 1.3:+42050967 None:intergenic
GGTGATTGATCGCCTTCCGT+TGG 0.568053 1.3:+42051597 None:intergenic
TTGTTGTGATGGTAAAATTG+AGG 0.569745 1.3:+42051171 None:intergenic
AGCAAGTTCATGCCTGTGGT+TGG 0.578750 1.3:-42052552 MS.gene41062:CDS
GAGCGTTATCAATATAGGTA+CGG 0.578923 1.3:-42050788 MS.gene41062:CDS
TCCAACTTTGAAGTTCCAGC+GGG 0.578991 1.3:-42050817 MS.gene41062:CDS
GAACAAGATATTGCATGTGA+TGG 0.582640 1.3:-42051003 MS.gene41062:CDS
GATTTCTGATGATATTAACA+AGG 0.586027 1.3:-42050356 MS.gene41062:CDS
TTGGTCTGCACCAAATGCCA+TGG 0.588107 1.3:+42051500 None:intergenic
ATTGCCATTTCCCATGATGT+TGG 0.593954 1.3:+42051576 None:intergenic
GATTTGAGTCCTTGTTGTGA+TGG 0.596972 1.3:+42051160 None:intergenic
TACAGGGAATGGCATTGTTG+TGG 0.598433 1.3:-42051638 MS.gene41062:intron
GTAGAAAACACTACTTCAAG+AGG 0.601842 1.3:-42050394 MS.gene41062:CDS
GATAACATACCAATGATGAA+AGG 0.603026 1.3:+42055482 None:intergenic
ATAACGCTCAAAGATCCCGC+TGG 0.608804 1.3:+42050802 None:intergenic
GCAACAAAAGCACCAACCAC+AGG 0.611443 1.3:+42052540 None:intergenic
CTCCAACTTTGAAGTTCCAG+CGG 0.612248 1.3:-42050818 MS.gene41062:CDS
AAATGAGCCTCCAATGCTAA+GGG 0.618035 1.3:+42050879 None:intergenic
CTTCAAGAGGAGGAAATGAT+GGG 0.622650 1.3:-42050381 MS.gene41062:CDS
AGCCAGCAAGTTCATGCCTG+TGG 0.625089 1.3:-42052556 MS.gene41062:CDS
GAAAACACTACTTCAAGAGG+AGG 0.636406 1.3:-42050391 MS.gene41062:CDS
TCTCAACCACAAAGAAGCAA+GGG 0.640730 1.3:-42055521 MS.gene41062:CDS
CAACCACAAAGAAGCAAGGG+TGG 0.643561 1.3:-42055518 MS.gene41062:CDS
AACAGCAATGATCAAACCAA+CGG 0.645820 1.3:-42051613 MS.gene41062:CDS
AGGAGAAGAAATGCGAACGA+TGG 0.652012 1.3:-42050610 MS.gene41062:CDS
GCAATGATCAAACCAACGGA+AGG 0.652956 1.3:-42051609 MS.gene41062:CDS
ATTTCTGATGATATTAACAA+GGG 0.659432 1.3:-42050355 MS.gene41062:CDS
CAACAAGGACTCAAATCTCG+TGG 0.669262 1.3:-42051154 MS.gene41062:CDS
CAAGAGGAGGAAATGATGGG+TGG 0.673473 1.3:-42050378 MS.gene41062:CDS
TAATGGAATAACTCTCACAA+TGG 0.677324 1.3:+42050924 None:intergenic
CTACTGTGCATAGATTCCAG+GGG 0.694955 1.3:+42050968 None:intergenic
ATACCAGCCAGACAAAGTTG+AGG 0.700204 1.3:+42050556 None:intergenic
AGCAAGAAAGAATAACAGTG+TGG 0.706784 1.3:+42051305 None:intergenic
ATGCTAAAGGAATAAGAACG+CGG 0.758334 1.3:+42050740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTTAGTTTTTATTTTT+GGG - chr1.3:42053940-42053959 MS.gene41062:intron 10.0%
!!! AATTAACTATTGAAATTTTT+CGG - chr1.3:42050586-42050605 MS.gene41062:CDS 10.0%
!!! AATTTTGTTGTATAATAATA+AGG - chr1.3:42053148-42053167 MS.gene41062:intron 10.0%
!!! CTTTTAATGAAAAATAAAAA+TGG + chr1.3:42051555-42051574 None:intergenic 10.0%
!!! TTATTGTTTACTTTTTTTTT+TGG - chr1.3:42050928-42050947 MS.gene41062:CDS 10.0%
!!! TTTTTATTTTTCATTAAAAG+TGG - chr1.3:42051555-42051574 MS.gene41062:CDS 10.0%
!! AAGAAAATATAAAACAAAGT+GGG - chr1.3:42052468-42052487 MS.gene41062:intron 15.0%
!! ATATCTTATTCAAAATAAGT+TGG + chr1.3:42051693-42051712 None:intergenic 15.0%
!! CATTAACTTATCATATTATT+GGG + chr1.3:42052937-42052956 None:intergenic 15.0%
!! TATTAATTATCAATAGTGTA+TGG + chr1.3:42052383-42052402 None:intergenic 15.0%
!! TCATTAACTTATCATATTAT+TGG + chr1.3:42052938-42052957 None:intergenic 15.0%
!!! AAAAACATAGAATATTTTGT+CGG + chr1.3:42050458-42050477 None:intergenic 15.0%
!!! ATAAATTTTGGTGAAATATT+CGG - chr1.3:42054792-42054811 MS.gene41062:intron 15.0%
!!! ATATAAATTCTCTATTTTGA+CGG - chr1.3:42052040-42052059 MS.gene41062:intron 15.0%
!!! GAAGTTTTAGTTTTTATTTT+TGG - chr1.3:42053939-42053958 MS.gene41062:intron 15.0%
!!! TTTTAGTTATTTGTTGTAAT+TGG + chr1.3:42050768-42050787 None:intergenic 15.0%
!!! TTTTTTTTTCTTTTTTTGAG+AGG - chr1.3:42050473-42050492 MS.gene41062:CDS 15.0%
!!! TTTTTTTTTTTTTGCTAAAG+AGG + chr1.3:42050849-42050868 None:intergenic 15.0%
!! AACATGATATTGTATTTGAT+GGG - chr1.3:42053239-42053258 MS.gene41062:intron 20.0%
!! AGAAAATATAAAACAAAGTG+GGG - chr1.3:42052469-42052488 MS.gene41062:intron 20.0%
!! ATAGAGAAAAGTTCAAAATT+AGG - chr1.3:42051897-42051916 MS.gene41062:intron 20.0%
!! ATATATAAGCCTATAATTGT+TGG - chr1.3:42052409-42052428 MS.gene41062:intron 20.0%
!! ATCAAATACAATATCATGTT+GGG + chr1.3:42053239-42053258 None:intergenic 20.0%
!! ATTTCTGATGATATTAACAA+GGG - chr1.3:42055517-42055536 MS.gene41062:CDS 20.0%
!! CAAGAAAATATAAAACAAAG+TGG - chr1.3:42052467-42052486 MS.gene41062:intron 20.0%
!! CATTAACTAAATCAGAAAAA+GGG - chr1.3:42051049-42051068 MS.gene41062:intron 20.0%
!! GAATATTTCACCAAAATTTA+TGG + chr1.3:42054793-42054812 None:intergenic 20.0%
!! GTATATAAAGGATATATCAA+TGG + chr1.3:42051427-42051446 None:intergenic 20.0%
!! TATAATTCTCAATCAAAAAG+AGG + chr1.3:42050882-42050901 None:intergenic 20.0%
!! TATATTGTTAAATCATGGAT+GGG - chr1.3:42050707-42050726 MS.gene41062:CDS 20.0%
!! TCATTAACTAAATCAGAAAA+AGG - chr1.3:42051048-42051067 MS.gene41062:intron 20.0%
!! TTATCCAATGAAAAAACTTA+TGG + chr1.3:42053895-42053914 None:intergenic 20.0%
!! TTCATAGGTAAATAGTTTAT+TGG + chr1.3:42053611-42053630 None:intergenic 20.0%
!! TTTGATAAATGAAATCACTT+GGG - chr1.3:42052088-42052107 MS.gene41062:intron 20.0%
!!! ATAATTATGGTTGATGTTAA+CGG - chr1.3:42053510-42053529 MS.gene41062:intron 20.0%
!!! CACTTTGTTTTATATTTTCT+TGG + chr1.3:42052469-42052488 None:intergenic 20.0%
!!! GGTTATCTTTTATATTTACT+TGG + chr1.3:42054394-42054413 None:intergenic 20.0%
!!! TAAAATTGAGGTGAATTTTT+AGG + chr1.3:42054692-42054711 None:intergenic 20.0%
!!! TTTGCATATTCCATAAATTT+TGG - chr1.3:42054780-42054799 MS.gene41062:intron 20.0%
!!! TTTTGAATCTTTACATAAAG+AGG + chr1.3:42054596-42054615 None:intergenic 20.0%
!!! TTTTGATAAATGAAATCACT+TGG - chr1.3:42052087-42052106 MS.gene41062:intron 20.0%
! AAGATAACCCTAATAACAAT+AGG - chr1.3:42054405-42054424 MS.gene41062:intron 25.0%
! AATCATCAATCTCATTAGAT+TGG + chr1.3:42052611-42052630 None:intergenic 25.0%
! AGAGTAAAATATTCATGATG+AGG + chr1.3:42053032-42053051 None:intergenic 25.0%
! AGATAACCCTAATAACAATA+GGG - chr1.3:42054406-42054425 MS.gene41062:intron 25.0%
! ATATAGGTACGGTAATTATA+TGG - chr1.3:42055095-42055114 MS.gene41062:intron 25.0%
! ATCTTTAACCAACTTGTAAA+TGG - chr1.3:42051146-42051165 MS.gene41062:CDS 25.0%
! CAACATGATATTGTATTTGA+TGG - chr1.3:42053238-42053257 MS.gene41062:intron 25.0%
! CATCAAATACAATATCATGT+TGG + chr1.3:42053240-42053259 None:intergenic 25.0%
! CATGATGAAATAAGAAAAGT+TGG - chr1.3:42054181-42054200 MS.gene41062:intron 25.0%
! CTATATTGTTAAATCATGGA+TGG - chr1.3:42050706-42050725 MS.gene41062:CDS 25.0%
! CTTAGTTTACCTTGTAAATA+GGG - chr1.3:42053828-42053847 MS.gene41062:intron 25.0%
! GAAAATATAAAACAAAGTGG+GGG - chr1.3:42052470-42052489 MS.gene41062:intron 25.0%
! GATTTCTGATGATATTAACA+AGG - chr1.3:42055516-42055535 MS.gene41062:CDS 25.0%
! TATCATTGTTTAATTCTCCA+AGG + chr1.3:42053007-42053026 None:intergenic 25.0%
! TATTCTTATTCGTTGTTACA+GGG - chr1.3:42054218-42054237 MS.gene41062:intron 25.0%
! TCTTAGTTTACCTTGTAAAT+AGG - chr1.3:42053827-42053846 MS.gene41062:intron 25.0%
! TCTTTAACCAACTTGTAAAT+GGG - chr1.3:42051147-42051166 MS.gene41062:CDS 25.0%
! TGAATACAAAACACAAACAT+TGG - chr1.3:42053634-42053653 MS.gene41062:intron 25.0%
! TGAGCTATATTGTTAAATCA+TGG - chr1.3:42050702-42050721 MS.gene41062:CDS 25.0%
! TGTAACAACGAATAAGAATA+AGG + chr1.3:42054218-42054237 None:intergenic 25.0%
! TTATTCTTATTCGTTGTTAC+AGG - chr1.3:42054217-42054236 MS.gene41062:intron 25.0%
! TTGAATCTAAACCGTTAATT+TGG - chr1.3:42051341-42051360 MS.gene41062:CDS 25.0%
! TTTCAATATATAGACATACC+AGG + chr1.3:42053412-42053431 None:intergenic 25.0%
!! AATCTAATGAGATTGATGAT+TGG - chr1.3:42052610-42052629 MS.gene41062:CDS 25.0%
!! CTGTGTAATAAAACTCATTT+TGG + chr1.3:42055366-42055385 None:intergenic 25.0%
!! GTATATATCCAAGATCATTT+TGG - chr1.3:42054500-42054519 MS.gene41062:intron 25.0%
!! GTTTTTATCTTTTCTCTACT+CGG - chr1.3:42055213-42055232 MS.gene41062:intron 25.0%
!! TTTTTCCAATCATGATATCA+AGG - chr1.3:42052557-42052576 MS.gene41062:CDS 25.0%
!!! AACTATTGAAATTTTTCGGT+TGG - chr1.3:42050590-42050609 MS.gene41062:CDS 25.0%
!!! ACTTTTCTTATTTCATCATG+AGG + chr1.3:42054181-42054200 None:intergenic 25.0%
!!! CAAACCATAAGTTTTTTCAT+TGG - chr1.3:42053888-42053907 MS.gene41062:intron 25.0%
!!! TTCGTTTTGATCGTATATAA+AGG + chr1.3:42051439-42051458 None:intergenic 25.0%
!!! TTGGTTTTAAATTACAGTTG+CGG - chr1.3:42053473-42053492 MS.gene41062:intron 25.0%
!!! TTTTTTTTTTGCTAAAGAGG+AGG + chr1.3:42050846-42050865 None:intergenic 25.0%
AAACTGATCAGAAACTACAT+GGG - chr1.3:42051103-42051122 MS.gene41062:intron 30.0%
AAATTTATTGTTGCCCAATC+CGG - chr1.3:42051214-42051233 MS.gene41062:CDS 30.0%
AACCCTTCAATCCAAATTAA+CGG + chr1.3:42051355-42051374 None:intergenic 30.0%
AAGGTAAACTAAGATTGCTA+TGG + chr1.3:42053821-42053840 None:intergenic 30.0%
AAGTAGATGTAATTTATCCC+TGG + chr1.3:42051779-42051798 None:intergenic 30.0%
ACAAACTATATAGTGTGACA+TGG - chr1.3:42053582-42053601 MS.gene41062:intron 30.0%
AGCAACAATTATGACATGAA+TGG + chr1.3:42051745-42051764 None:intergenic 30.0%
ATCAGTGCAAAGAAAAGAAT+GGG - chr1.3:42055181-42055200 MS.gene41062:intron 30.0%
CAAACTATATAGTGTGACAT+GGG - chr1.3:42053583-42053602 MS.gene41062:intron 30.0%
CGATCGAAAATCATTGATAA+AGG + chr1.3:42050652-42050671 None:intergenic 30.0%
GAATATAGCGAAAGAGATAA+AGG - chr1.3:42052707-42052726 MS.gene41062:intron 30.0%
GACTCTTTAATATGAGATGA+CGG - chr1.3:42051251-42051270 MS.gene41062:CDS 30.0%
GATAACATACCAATGATGAA+AGG + chr1.3:42050393-42050412 None:intergenic 30.0%
TAAACTAAGATTGCTATGGT+GGG + chr1.3:42053817-42053836 None:intergenic 30.0%
TAAACTGATCAGAAACTACA+TGG - chr1.3:42051102-42051121 MS.gene41062:intron 30.0%
TAATGGAATAACTCTCACAA+TGG + chr1.3:42054951-42054970 None:intergenic 30.0%
TCAATCAATACTTTGAACCT+TGG - chr1.3:42053454-42053473 MS.gene41062:intron 30.0%
TCTTTGAGCGTTATCAATAT+AGG - chr1.3:42055079-42055098 MS.gene41062:intron 30.0%
TGAATAAAGTCATAGTGAGA+AGG + chr1.3:42052870-42052889 None:intergenic 30.0%
TGAATATCCCAATCAAAAAG+TGG - chr1.3:42050287-42050306 MS.gene41062:CDS 30.0%
TGGTATTTGATGGAATACAT+GGG - chr1.3:42052253-42052272 MS.gene41062:intron 30.0%
TTAAATAGTAAAGAGGTGGA+GGG - chr1.3:42052278-42052297 MS.gene41062:intron 30.0%
TTATTCCATTATGGTCTAGT+GGG - chr1.3:42054960-42054979 MS.gene41062:intron 30.0%
TTGGTATTTGATGGAATACA+TGG - chr1.3:42052252-42052271 MS.gene41062:intron 30.0%
TTGTGAGAGTTATTCCATTA+TGG - chr1.3:42054951-42054970 MS.gene41062:intron 30.0%
TTGTTGTGATGGTAAAATTG+AGG + chr1.3:42054704-42054723 None:intergenic 30.0%
TTTGTTGCAGATTCTTATCT+CGG - chr1.3:42053347-42053366 MS.gene41062:intron 30.0%
! AAACCGTTAATTTGGATTGA+AGG - chr1.3:42051349-42051368 MS.gene41062:CDS 30.0%
! AACCGTTAATTTGGATTGAA+GGG - chr1.3:42051350-42051369 MS.gene41062:CDS 30.0%
! AACTTTTCTCTATTGCCAAA+TGG + chr1.3:42051890-42051909 None:intergenic 30.0%
! CTATTATCTAGTTTGCAGTT+GGG - chr1.3:42055594-42055613 MS.gene41062:CDS 30.0%
! GAACAAAGCTTGTGTTATTA+AGG - chr1.3:42054841-42054860 MS.gene41062:intron 30.0%
! GCAACTGTAATTTAAAACCA+AGG + chr1.3:42053474-42053493 None:intergenic 30.0%
! GGAACTAACTTTTATATCTC+AGG - chr1.3:42054813-42054832 MS.gene41062:intron 30.0%
! GTGACTAATCCAGAAATTTT+CGG - chr1.3:42051937-42051956 MS.gene41062:intron 30.0%
! GTTTTGTATTCATGCTTCAT+AGG + chr1.3:42053626-42053645 None:intergenic 30.0%
! TATACGTGTTCTTTTATGTC+TGG - chr1.3:42050561-42050580 MS.gene41062:CDS 30.0%
! TCAATTTTACCATCACAACA+AGG - chr1.3:42054703-42054722 MS.gene41062:intron 30.0%
! TCTATTATCTAGTTTGCAGT+TGG - chr1.3:42055593-42055612 MS.gene41062:CDS 30.0%
! TCTGGTTGGAAAATTCTTTT+TGG + chr1.3:42050435-42050454 None:intergenic 30.0%
! TGGAAGTTTTCTGTTGTTAT+AGG + chr1.3:42054663-42054682 None:intergenic 30.0%
! TTTTGTGTAATTACATGTGC+CGG - chr1.3:42053713-42053732 MS.gene41062:intron 30.0%
!! AATTGAGGTGAATTTTTAGG+CGG + chr1.3:42054689-42054708 None:intergenic 30.0%
!! ATATCCAAGATCATTTTGGT+TGG - chr1.3:42054504-42054523 MS.gene41062:intron 30.0%
!! CAATTGACTTTTGATCCATT+TGG - chr1.3:42051872-42051891 MS.gene41062:intron 30.0%
!! GTTTTGATCGTGTAAAACTT+AGG + chr1.3:42051488-42051507 None:intergenic 30.0%
!! TCTCATGTAGTTTTTCAGAT+CGG + chr1.3:42051079-42051098 None:intergenic 30.0%
!! TCTTGGAAATGTTTTTCAAC+TGG - chr1.3:42054429-42054448 MS.gene41062:intron 30.0%
!!! GTGAAATGTTAGTTTTAGTG+AGG - chr1.3:42052163-42052182 MS.gene41062:intron 30.0%
!!! TATCCAAGATCATTTTGGTT+GGG - chr1.3:42054505-42054524 MS.gene41062:intron 30.0%
AACAGCAATGATCAAACCAA+CGG - chr1.3:42054259-42054278 MS.gene41062:intron 35.0%
ACCAACAGTCCAACAATTAT+AGG + chr1.3:42052421-42052440 None:intergenic 35.0%
ACCTACCTTAGTTTATCAGT+TGG + chr1.3:42054746-42054765 None:intergenic 35.0%
ACCTTGTAAATAGGGATTGA+GGG - chr1.3:42053836-42053855 MS.gene41062:intron 35.0%
ACTCAAACCCATTTACAAGT+TGG + chr1.3:42051157-42051176 None:intergenic 35.0%
AGCAAGAAAGAATAACAGTG+TGG + chr1.3:42054570-42054589 None:intergenic 35.0%
ATCACTATGCCTTTCATCAT+TGG - chr1.3:42050381-42050400 MS.gene41062:CDS 35.0%
ATCTTATAGTGAGAGATGAG+AGG + chr1.3:42051388-42051407 None:intergenic 35.0%
ATGCTAAAGGAATAAGAACG+CGG + chr1.3:42055135-42055154 None:intergenic 35.0%
ATGGGGGTTAAATAGTAAAG+AGG - chr1.3:42052271-42052290 MS.gene41062:intron 35.0%
CAATATTTCAACCGCAATTG+CGG - chr1.3:42054116-42054135 MS.gene41062:intron 35.0%
CCAACTCAAAATTAGCATGT+AGG - chr1.3:42051801-42051820 MS.gene41062:intron 35.0%
CCATCAAATACCAAATCCAA+CGG + chr1.3:42052246-42052265 None:intergenic 35.0%
CCTTAAGATTCTGATTTCTG+GGG + chr1.3:42050994-42051013 None:intergenic 35.0%
CGTTGCGATTGTGATAATTA+TGG - chr1.3:42053497-42053516 MS.gene41062:intron 35.0%
GAACAAGATATTGCATGTGA+TGG - chr1.3:42054869-42054888 MS.gene41062:intron 35.0%
GAGCGTTATCAATATAGGTA+CGG - chr1.3:42055084-42055103 MS.gene41062:intron 35.0%
GATCAGTGCAAAGAAAAGAA+TGG - chr1.3:42055180-42055199 MS.gene41062:intron 35.0%
GCAAAGAAAAGAATGGGAAT+TGG - chr1.3:42055187-42055206 MS.gene41062:intron 35.0%
GCCTTAAGATTCTGATTTCT+GGG + chr1.3:42050995-42051014 None:intergenic 35.0%
GGATAAGCATCACACAATTT+CGG + chr1.3:42053985-42054004 None:intergenic 35.0%
GGGCATATGATTTCAAATTG+TGG + chr1.3:42054149-42054168 None:intergenic 35.0%
GGTATTTGATGGAATACATG+GGG - chr1.3:42052254-42052273 MS.gene41062:intron 35.0%
GTAAACTAAGATTGCTATGG+TGG + chr1.3:42053818-42053837 None:intergenic 35.0%
GTAGAAAACACTACTTCAAG+AGG - chr1.3:42055478-42055497 MS.gene41062:intron 35.0%
GTATTTGATGGAATACATGG+GGG - chr1.3:42052255-42052274 MS.gene41062:intron 35.0%
GTCGGGATAAAAAAATTTGC+TGG - chr1.3:42052331-42052350 MS.gene41062:intron 35.0%
GTGTATGGTATCTCACTAAA+CGG + chr1.3:42052368-42052387 None:intergenic 35.0%
GTTAAATAGTAAAGAGGTGG+AGG - chr1.3:42052277-42052296 MS.gene41062:intron 35.0%
GTTATTCCATTATGGTCTAG+TGG - chr1.3:42054959-42054978 MS.gene41062:intron 35.0%
TAAATAGTAAAGAGGTGGAG+GGG - chr1.3:42052279-42052298 MS.gene41062:intron 35.0%
TACCTTGTAAATAGGGATTG+AGG - chr1.3:42053835-42053854 MS.gene41062:intron 35.0%
TATAATTGTTGGACTGTTGG+TGG - chr1.3:42052420-42052439 MS.gene41062:intron 35.0%
TCCAACTGATAAACTAAGGT+AGG - chr1.3:42054742-42054761 MS.gene41062:intron 35.0%
TGATTGGGATATTCATCATC+TGG + chr1.3:42050282-42050301 None:intergenic 35.0%
TGCAATTGACATGAGACTAA+AGG + chr1.3:42054333-42054352 None:intergenic 35.0%
TGCCTTAAGATTCTGATTTC+TGG + chr1.3:42050996-42051015 None:intergenic 35.0%
TGGTTCCAACTGATAAACTA+AGG - chr1.3:42054738-42054757 MS.gene41062:intron 35.0%
TTAGTTAACTCTTCAACTGC+AGG + chr1.3:42055628-42055647 None:intergenic 35.0%
TTATTCGTTGTTACAGGGAA+TGG - chr1.3:42054223-42054242 MS.gene41062:intron 35.0%
TTCCAATCATGATATCAAGG+TGG - chr1.3:42052560-42052579 MS.gene41062:CDS 35.0%
TTGATCGTGTAAAACTTAGG+TGG + chr1.3:42051485-42051504 None:intergenic 35.0%
TTTAGTCTCATGTCAATTGC+AGG - chr1.3:42054332-42054351 MS.gene41062:intron 35.0%
TTTCCCAACCAAAATGATCT+TGG + chr1.3:42054511-42054530 None:intergenic 35.0%
! AAAGATCCCTTTTTCTGATC+AGG + chr1.3:42051132-42051151 None:intergenic 35.0%
! AATCCAGAAATTTTCGGTAG+TGG - chr1.3:42051943-42051962 MS.gene41062:intron 35.0%
! ATCCAGAAATTTTCGGTAGT+GGG - chr1.3:42051944-42051963 MS.gene41062:intron 35.0%
! CACCTAAAAGCTTTTTACCT+TGG - chr1.3:42052987-42053006 MS.gene41062:intron 35.0%
! CATAGAATATTTTGTCGGTC+TGG + chr1.3:42050453-42050472 None:intergenic 35.0%
! CCAAGACCCTATTGTTATTA+GGG + chr1.3:42054415-42054434 None:intergenic 35.0%
! CTCCAAGGTAAAAAGCTTTT+AGG + chr1.3:42052992-42053011 None:intergenic 35.0%
! CTTTAGCATCGAAGATAAGA+GGG - chr1.3:42055146-42055165 MS.gene41062:intron 35.0%
! GATAAAAACATGAGTGCTGT+TGG + chr1.3:42054548-42054567 None:intergenic 35.0%
! GTGGACATTACTCTTTTTGA+AGG - chr1.3:42052579-42052598 MS.gene41062:CDS 35.0%
! TCCAAGACCCTATTGTTATT+AGG + chr1.3:42054416-42054435 None:intergenic 35.0%
! TCTGAAGCAGTCAATTTCAT+AGG - chr1.3:42055340-42055359 MS.gene41062:intron 35.0%
! TCTTTAATATGAGATGACGG+AGG - chr1.3:42051254-42051273 MS.gene41062:CDS 35.0%
! TTGAGACGTTTGTTGAAACA+TGG + chr1.3:42050816-42050835 None:intergenic 35.0%
!! CCTACATGCTAATTTTGAGT+TGG + chr1.3:42051804-42051823 None:intergenic 35.0%
!! CGATTCTTAAGTGTTGGATT+AGG - chr1.3:42053371-42053390 MS.gene41062:intron 35.0%
!! CTCATGTAGTTTTTCAGATC+GGG + chr1.3:42051078-42051097 None:intergenic 35.0%
!! CTTTAATATGAGATGACGGA+GGG - chr1.3:42051255-42051274 MS.gene41062:CDS 35.0%
!! GAGGAGTTATGCTATTTCAA+GGG - chr1.3:42052182-42052201 MS.gene41062:intron 35.0%
!! GTCATTTTGACAAGTACTCT+TGG - chr1.3:42055539-42055558 MS.gene41062:CDS 35.0%
!! TGAGGAGTTATGCTATTTCA+AGG - chr1.3:42052181-42052200 MS.gene41062:intron 35.0%
!! TGGTGTTGTATCATGAATAC+TGG - chr1.3:42050741-42050760 MS.gene41062:CDS 35.0%
!!! CAGCGATTTTTGAGACTATA+AGG - chr1.3:42055242-42055261 MS.gene41062:intron 35.0%
!!! GATCATTTTGGTTGGGAAAT+TGG - chr1.3:42054512-42054531 MS.gene41062:intron 35.0%
!!! TCCTTGTCCACTTTTTGATT+GGG + chr1.3:42050297-42050316 None:intergenic 35.0%
!!! TTCCTTGTCCACTTTTTGAT+TGG + chr1.3:42050298-42050317 None:intergenic 35.0%
AAAATGAGCCTCCAATGCTA+AGG + chr1.3:42054997-42055016 None:intergenic 40.0%
AAATGAGCCTCCAATGCTAA+GGG + chr1.3:42054996-42055015 None:intergenic 40.0%
AAGTACTCTTGGCTTATAGC+TGG - chr1.3:42055550-42055569 MS.gene41062:CDS 40.0%
ACGATCAAAACGCTGAAAAG+TGG - chr1.3:42051497-42051516 MS.gene41062:CDS 40.0%
ACTTCAAGAGGAGGAAATGA+TGG - chr1.3:42055490-42055509 MS.gene41062:intron 40.0%
ATACCAAATCCAACGGTTCA+AGG + chr1.3:42052239-42052258 None:intergenic 40.0%
ATATCAATGGAGACTGTGAG+AGG + chr1.3:42051414-42051433 None:intergenic 40.0%
ATCACCAACATCATGGGAAA+TGG - chr1.3:42054292-42054311 MS.gene41062:intron 40.0%
ATCATGATGACCCTTAGCAT+TGG - chr1.3:42054983-42055002 MS.gene41062:intron 40.0%
ATCTACTGTGCATAGATTCC+AGG + chr1.3:42054909-42054928 None:intergenic 40.0%
ATGATCCCACTAGACCATAA+TGG + chr1.3:42054968-42054987 None:intergenic 40.0%
ATGGTTCAAGAATAAACCCC+TGG - chr1.3:42054888-42054907 MS.gene41062:intron 40.0%
CACCCTAACATGCTAGATTA+GGG - chr1.3:42051653-42051672 MS.gene41062:intron 40.0%
CACCCTAATCTAGCATGTTA+GGG + chr1.3:42051658-42051677 None:intergenic 40.0%
CATGAATTTCCTTGAACCGT+TGG - chr1.3:42052227-42052246 MS.gene41062:intron 40.0%
CCCCAGAAATCAGAATCTTA+AGG - chr1.3:42050991-42051010 MS.gene41062:CDS 40.0%
CCCTAATAACAATAGGGTCT+TGG - chr1.3:42054412-42054431 MS.gene41062:intron 40.0%
CCTCTTATCTTCGATGCTAA+AGG + chr1.3:42055148-42055167 None:intergenic 40.0%
CCTTGTAAATAGGGATTGAG+GGG - chr1.3:42053837-42053856 MS.gene41062:intron 40.0%
CGATCAATCACCAACATCAT+GGG - chr1.3:42054286-42054305 MS.gene41062:intron 40.0%
CTTCAAGAGGAGGAAATGAT+GGG - chr1.3:42055491-42055510 MS.gene41062:intron 40.0%
CTTGTAAATAGGGATTGAGG+GGG - chr1.3:42053838-42053857 MS.gene41062:intron 40.0%
GAAAACACTACTTCAAGAGG+AGG - chr1.3:42055481-42055500 MS.gene41062:intron 40.0%
GACAAGGAAGCTCAATATTC+AGG - chr1.3:42050309-42050328 MS.gene41062:CDS 40.0%
GATTCTCTCACTCAAACTCA+GGG + chr1.3:42052529-42052548 None:intergenic 40.0%
GCAACACTAGACATAGTACT+TGG + chr1.3:42055394-42055413 None:intergenic 40.0%
GCCTATAATTGTTGGACTGT+TGG - chr1.3:42052417-42052436 MS.gene41062:intron 40.0%
GGGGTTAAATAGTAAAGAGG+TGG - chr1.3:42052274-42052293 MS.gene41062:intron 40.0%
GTCCACCTTGATATCATGAT+TGG + chr1.3:42052565-42052584 None:intergenic 40.0%
GTGATTGTTTGCAGCAAATG+AGG - chr1.3:42053181-42053200 MS.gene41062:intron 40.0%
GTTGCTACTATTTCAGACCA+GGG - chr1.3:42051759-42051778 MS.gene41062:intron 40.0%
GTTTCATGTTCCATGGCATT+TGG - chr1.3:42054362-42054381 MS.gene41062:intron 40.0%
TCACCCTAATCTAGCATGTT+AGG + chr1.3:42051659-42051678 None:intergenic 40.0%
TCCCAATCAAAAAGTGGACA+AGG - chr1.3:42050293-42050312 MS.gene41062:CDS 40.0%
TCTACTGTGCATAGATTCCA+GGG + chr1.3:42054908-42054927 None:intergenic 40.0%
TCTCAACCACAAAGAAGCAA+GGG - chr1.3:42050351-42050370 MS.gene41062:CDS 40.0%
TCTCCAAGATGAAGCTTGAA+AGG + chr1.3:42053266-42053285 None:intergenic 40.0%
TCTGGATCTTCTTGTTGCAA+TGG + chr1.3:42050264-42050283 None:intergenic 40.0%
TGCTTGCTTGTGTAGAGAAA+GGG - chr1.3:42051295-42051314 MS.gene41062:CDS 40.0%
TGGGAAGATTTGAACGAACA+TGG - chr1.3:42053959-42053978 MS.gene41062:intron 40.0%
TGTTGCTACTATTTCAGACC+AGG - chr1.3:42051758-42051777 MS.gene41062:intron 40.0%
TGTTTCTTCTACTCCGGATT+GGG + chr1.3:42051230-42051249 None:intergenic 40.0%
TTAGGGTGGTGACAATTAAG+AGG + chr1.3:42051641-42051660 None:intergenic 40.0%
TTCAGGTGATGCTGATGAAA+TGG - chr1.3:42050326-42050345 MS.gene41062:CDS 40.0%
TTCTCAACCACAAAGAAGCA+AGG - chr1.3:42050350-42050369 MS.gene41062:CDS 40.0%
TTTCCTTGAACCGTTGGATT+TGG - chr1.3:42052233-42052252 MS.gene41062:intron 40.0%
! AAATGCGAACGATGGTGTTT+TGG - chr1.3:42055270-42055289 MS.gene41062:intron 40.0%
! ATTGCCATTTCCCATGATGT+TGG + chr1.3:42054299-42054318 None:intergenic 40.0%
! CCGTTGGATTTGGTATTTGA+TGG - chr1.3:42052243-42052262 MS.gene41062:intron 40.0%
! CCTTTAGCATCGAAGATAAG+AGG - chr1.3:42055145-42055164 MS.gene41062:intron 40.0%
! GAATATTTTGTCGGTCTGGT+TGG + chr1.3:42050449-42050468 None:intergenic 40.0%
! GATTTGAGTCCTTGTTGTGA+TGG + chr1.3:42054715-42054734 None:intergenic 40.0%
! TAAGAAGCACATACACTCCT+CGG + chr1.3:42053786-42053805 None:intergenic 40.0%
! TTCGCTTTCTGGATTAGGAA+TGG - chr1.3:42055417-42055436 MS.gene41062:intron 40.0%
! TTCTTTGCACTGATCGTAAC+TGG + chr1.3:42055175-42055194 None:intergenic 40.0%
! TTGTTTCTTCTACTCCGGAT+TGG + chr1.3:42051231-42051250 None:intergenic 40.0%
!! GAGTCTTGTTTCTTCTACTC+CGG + chr1.3:42051236-42051255 None:intergenic 40.0%
!! GGTGAATTTTTAGGCGGTAA+TGG + chr1.3:42054683-42054702 None:intergenic 40.0%
!! TTTTGGAAATGTCGGCATTG+TGG - chr1.3:42055287-42055306 MS.gene41062:intron 40.0%
!!! CGATGGTGTTTTGGAAATGT+CGG - chr1.3:42055279-42055298 MS.gene41062:intron 40.0%
AAAAAGATGCGAGCACGTGA+AGG - chr1.3:42052786-42052805 MS.gene41062:intron 45.0%
AACCACACTGTAACTGCATC+AGG + chr1.3:42054006-42054025 None:intergenic 45.0%
AGAGGCTAGCAGTTACAATG+TGG - chr1.3:42054038-42054057 MS.gene41062:intron 45.0%
AGGAGAAGAAATGCGAACGA+TGG - chr1.3:42055262-42055281 MS.gene41062:intron 45.0%
ATACCAGCCAGACAAAGTTG+AGG + chr1.3:42055319-42055338 None:intergenic 45.0%
ATCCTGATGCAGTTACAGTG+TGG - chr1.3:42054001-42054020 MS.gene41062:intron 45.0%
ATGGATGGGTAGTGTATGTG+TGG - chr1.3:42050721-42050740 MS.gene41062:CDS 45.0%
CAACAAGGACTCAAATCTCG+TGG - chr1.3:42054718-42054737 MS.gene41062:intron 45.0%
CCACCCTAACATGCTAGATT+AGG - chr1.3:42051652-42051671 MS.gene41062:intron 45.0%
CCCCTCAATCCCTATTTACA+AGG + chr1.3:42053840-42053859 None:intergenic 45.0%
CCTAATCTAGCATGTTAGGG+TGG + chr1.3:42051655-42051674 None:intergenic 45.0%
CGATTCTCTCACTCAAACTC+AGG + chr1.3:42052530-42052549 None:intergenic 45.0%
CGCAAAACTAGCGAACAAGT+TGG + chr1.3:42054624-42054643 None:intergenic 45.0%
CTACTGTGCATAGATTCCAG+GGG + chr1.3:42054907-42054926 None:intergenic 45.0%
CTCCCACTACCGAAAATTTC+TGG + chr1.3:42051949-42051968 None:intergenic 45.0%
CTTGGCAATACTGCAAGCTT+AGG - chr1.3:42053206-42053225 MS.gene41062:intron 45.0%
GCAATGATCAAACCAACGGA+AGG - chr1.3:42054263-42054282 MS.gene41062:intron 45.0%
GCGATCAATCACCAACATCA+TGG - chr1.3:42054285-42054304 MS.gene41062:intron 45.0%
GGACCTTTCAAGCTTCATCT+TGG - chr1.3:42053260-42053279 MS.gene41062:intron 45.0%
GGAGAACCACTGAATAGGAA+GGG - chr1.3:42052441-42052460 MS.gene41062:intron 45.0%
GGAGGTGATATGTCTGTTCA+AGG + chr1.3:42055038-42055057 None:intergenic 45.0%
GGGATGCCTGATCAGAAAAA+GGG - chr1.3:42051123-42051142 MS.gene41062:intron 45.0%
GTGCTTGCTTGTGTAGAGAA+AGG - chr1.3:42051294-42051313 MS.gene41062:CDS 45.0%
GTGGTTATACACGTACGTAG+AGG - chr1.3:42054020-42054039 MS.gene41062:intron 45.0%
TACAGGGAATGGCATTGTTG+TGG - chr1.3:42054234-42054253 MS.gene41062:intron 45.0%
TCATCATGAGGTTCAGCTCA+GGG + chr1.3:42054169-42054188 None:intergenic 45.0%
TGCTGGTGTTTCATGTTCCA+TGG - chr1.3:42054355-42054374 MS.gene41062:intron 45.0%
TGGAGAACCACTGAATAGGA+AGG - chr1.3:42052440-42052459 MS.gene41062:intron 45.0%
TGGGATGCCTGATCAGAAAA+AGG - chr1.3:42051122-42051141 MS.gene41062:intron 45.0%
TTCATCATGAGGTTCAGCTC+AGG + chr1.3:42054170-42054189 None:intergenic 45.0%
TTGGTACCCTTCCTATTCAG+TGG + chr1.3:42052450-42052469 None:intergenic 45.0%
TTGGTGGAGAACCACTGAAT+AGG - chr1.3:42052436-42052455 MS.gene41062:intron 45.0%
! AAGAAGCACATACACTCCTC+GGG + chr1.3:42053785-42053804 None:intergenic 45.0%
! AGGCAAGCATCGTGATTTGT+CGG - chr1.3:42052313-42052332 MS.gene41062:intron 45.0%
! ATGATGACCCTTAGCATTGG+AGG - chr1.3:42054986-42055005 MS.gene41062:intron 45.0%
! CACGTGCTCGCATCTTTTTA+AGG + chr1.3:42052785-42052804 None:intergenic 45.0%
! CTAGTTTGCAGTTGGGCTTA+TGG - chr1.3:42055601-42055620 MS.gene41062:CDS 45.0%
! CTCGGTCGATTCTTAAGTGT+TGG - chr1.3:42053365-42053384 MS.gene41062:intron 45.0%
! TAAAACAAAGTGGGGGCACA+AGG - chr1.3:42052477-42052496 MS.gene41062:intron 45.0%
! TTTGCAGCAAATGAGGCACT+TGG - chr1.3:42053188-42053207 MS.gene41062:intron 45.0%
!! CTCCAACTTTGAAGTTCCAG+CGG - chr1.3:42055054-42055073 MS.gene41062:intron 45.0%
!! TCCAACTTTGAAGTTCCAGC+GGG - chr1.3:42055055-42055074 MS.gene41062:intron 45.0%
!!! ATTTTTTTTTTAATTTTTTC+TGG - chr1.3:42052652-42052671 MS.gene41062:CDS 5.0%
AACCACAGGCATGAACTTGC+TGG + chr1.3:42053321-42053340 None:intergenic 50.0%
ACTCAGGGACGGATAAACGT+TGG + chr1.3:42052514-42052533 None:intergenic 50.0%
AGACCACCCTTGCTTCTTTG+TGG + chr1.3:42050360-42050379 None:intergenic 50.0%
AGCAAGTTCATGCCTGTGGT+TGG - chr1.3:42053320-42053339 MS.gene41062:intron 50.0%
AGGTTCTGCTGTCAGTTTCC+TGG - chr1.3:42053391-42053410 MS.gene41062:intron 50.0%
ATAACGCTCAAAGATCCCGC+TGG + chr1.3:42055073-42055092 None:intergenic 50.0%
CAACCACAAAGAAGCAAGGG+TGG - chr1.3:42050354-42050373 MS.gene41062:CDS 50.0%
CGCTGGAACTTCAAAGTTGG+AGG + chr1.3:42055056-42055075 None:intergenic 50.0%
CTCATGTCAATTGCAGGTGC+TGG - chr1.3:42054338-42054357 MS.gene41062:intron 50.0%
CTCTCACTCAAACTCAGGGA+CGG + chr1.3:42052525-42052544 None:intergenic 50.0%
GCTGCTTCGCTTTCTGGATT+AGG - chr1.3:42055412-42055431 MS.gene41062:intron 50.0%
GCTTGCACCTCAACTTTGTC+TGG - chr1.3:42055309-42055328 MS.gene41062:intron 50.0%
GTGGAGGGGAGATAAGTAAC+AGG - chr1.3:42052293-42052312 MS.gene41062:intron 50.0%
GTGGTCTGTATCCGCAATTG+CGG + chr1.3:42054130-42054149 None:intergenic 50.0%
GTTAACGGCATTGCAACTGC+TGG - chr1.3:42053525-42053544 MS.gene41062:intron 50.0%
TCCCGCTGGAACTTCAAAGT+TGG + chr1.3:42055059-42055078 None:intergenic 50.0%
TTGGTCTGCACCAAATGCCA+TGG + chr1.3:42054375-42054394 None:intergenic 50.0%
! AGTGTTGCTGCTTCGCTTTC+TGG - chr1.3:42055406-42055425 MS.gene41062:intron 50.0%
! CAAGAGGAGGAAATGATGGG+TGG - chr1.3:42055494-42055513 MS.gene41062:CDS 50.0%
! GGCAAGCATCGTGATTTGTC+GGG - chr1.3:42052314-42052333 MS.gene41062:intron 50.0%
! TCTGGATTAGGAATGGCTGC+AGG - chr1.3:42055424-42055443 MS.gene41062:intron 50.0%
! TGATGCGCTAGCCTCTATGA+TGG + chr1.3:42054095-42054114 None:intergenic 50.0%
!! GCAACAAAAGCACCAACCAC+AGG + chr1.3:42053335-42053354 None:intergenic 50.0%
!! TATGAGATGACGGAGGGACT+TGG - chr1.3:42051261-42051280 MS.gene41062:CDS 50.0%
AGCCAGCAAGTTCATGCCTG+TGG - chr1.3:42053316-42053335 MS.gene41062:intron 55.0%
AGGAATGGCTGCAGGAAGCT+TGG - chr1.3:42055432-42055451 MS.gene41062:intron 55.0%
ATGGCATCACACCGCAACTG+CGG + chr1.3:42054076-42054095 None:intergenic 55.0%
CGAAGTTCACACCGCAGTTG+CGG - chr1.3:42054062-42054081 MS.gene41062:intron 55.0%
CGCAACTGCGGTGTGAACTT+CGG + chr1.3:42054064-42054083 None:intergenic 55.0%
GCACATACACTCCTCGGGTT+AGG + chr1.3:42053780-42053799 None:intergenic 55.0%
GCACCTCAACTTTGTCTGGC+TGG - chr1.3:42055313-42055332 MS.gene41062:intron 55.0%
GCGGTGTGATGCCATCATAG+AGG - chr1.3:42054081-42054100 MS.gene41062:intron 55.0%
GGAGGGACTTGGAGACATGA+GGG - chr1.3:42051272-42051291 MS.gene41062:CDS 55.0%
GGTGATTGATCGCCTTCCGT+TGG + chr1.3:42054278-42054297 None:intergenic 55.0%
GTCAGACACGTGTCCAACAC+CGG - chr1.3:42053748-42053767 MS.gene41062:intron 55.0%
TCAGACACGTGTCCAACACC+GGG - chr1.3:42053749-42053768 MS.gene41062:intron 55.0%
! TGCTGGCTGCAGCAGATAAG+AGG + chr1.3:42053304-42053323 None:intergenic 55.0%
CGGAGGGACTTGGAGACATG+AGG - chr1.3:42051271-42051290 MS.gene41062:CDS 60.0%
GCAACTGCTGGCAACTGCTG+TGG - chr1.3:42053537-42053556 MS.gene41062:intron 60.0%
GTCTGACACTGACACGACGC+CGG + chr1.3:42053735-42053754 None:intergenic 60.0%
GGTTAGGCGTGTCCCGGTGT+TGG + chr1.3:42053764-42053783 None:intergenic 65.0%
! TCCTCGGGTTAGGCGTGTCC+CGG + chr1.3:42053770-42053789 None:intergenic 65.0%
ACCGGGACACGCCTAACCCG+AGG - chr1.3:42053766-42053785 MS.gene41062:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 42050240 42055654 42050240 ID=MS.gene41062
chr1.3 mRNA 42050240 42055654 42050240 ID=MS.gene41062.t1;Parent=MS.gene41062
chr1.3 exon 42055492 42055654 42055492 ID=MS.gene41062.t1.exon1;Parent=MS.gene41062.t1
chr1.3 CDS 42055492 42055654 42055492 ID=cds.MS.gene41062.t1;Parent=MS.gene41062.t1
chr1.3 exon 42052482 42052699 42052482 ID=MS.gene41062.t1.exon2;Parent=MS.gene41062.t1
chr1.3 CDS 42052482 42052699 42052482 ID=cds.MS.gene41062.t1;Parent=MS.gene41062.t1
chr1.3 exon 42051135 42051655 42051135 ID=MS.gene41062.t1.exon3;Parent=MS.gene41062.t1
chr1.3 CDS 42051135 42051655 42051135 ID=cds.MS.gene41062.t1;Parent=MS.gene41062.t1
chr1.3 exon 42050240 42051059 42050240 ID=MS.gene41062.t1.exon4;Parent=MS.gene41062.t1
chr1.3 CDS 42050240 42051059 42050240 ID=cds.MS.gene41062.t1;Parent=MS.gene41062.t1
Gene Sequence

>MS.gene41062

ATGACTATGTCTATATATGTTCCATTGCAACAAGAAGATCCAGATGATGAATATCCCAATCAAAAAGTGGACAAGGAAGCTCAATATTCAGGTGATGCTGATGAAATGGTTTCTCAACCACAAAGAAGCAAGGGTGGTCTTATCACTATGCCTTTCATCATTGGTATGTTATCTATCTATCTATCTATTCTGCCAAAAAGAATTTTCCAACCAGACCGACAAAATATTCTATGTTTTTTTTTCTTTTTTTGAGAGGAAATATTCTATGTTTTATTTCATGTTTATTTTAAAGTTATAATAACATTTTTATTAATTGTTTGATATACGTGTTCTTTTATGTCTGGTTAATTAACTATTGAAATTTTTCGGTTGGTATATATCTTTATCAATGATTTTTTTTTTTGACAAACCTTTATCAATGATTTTCGATCGTTGAATGCTTGAGAGAGAGTGAGAGTAGAGTGAGCTATATTGTTAAATCATGGATGGGTAGTGTATGTGTGGTGTTGTATCATGAATACTGGACCAATTACAACAAATAACTAAAACTAAACGTGTCAAAATACTAAATTGCCATGTTTCAACAAACGTCTCAAGTTTACACCTCCTCTTTAGCAAAAAAAAAAAAAGTTCACATCTCCTCTTTTTGATTGAGAATTATATTTATTTGATGCAAATATTTTTTTTATTATTGTTTACTTTTTTTTTTGGTACATATTATTGTTTACTTTAATTAACTAAATCTTAATTTCCCCAGAAATCAGAATCTTAAGGCAATTTATTGCTAGAGAGTTATTGTTATAACTTTTCATTAACTAAATCAGAAAAAGGGATGCCCGATCTGAAAAACTACATGAGATCTTAAACTGATCAGAAACTACATGGGATGCCTGATCAGAAAAAGGGATCTTTAACCAACTTGTAAATGGGTTTGAGTTTTAGTCTTGACTTCTTGTAGTTTCAACTTGATTAGAAAATTTATTGTTGCCCAATCCGGAGTAGAAGAAACAAGACTCTTTAATATGAGATGACGGAGGGACTTGGAGACATGAGGGTGCTTGCTTGTGTAGAGAAAGGGCATGCGAAGAGTTAAGATTTCAATTGAATCTAAACCGTTAATTTGGATTGAAGGGTTATGATTTGATCCTCTCATCTCTCACTATAAGATAATCCTCTCACAGTCTCCATTGATATATCCTTTATATACGATCAAAACGAAGCAAGTGTGAAAATTATTCTGAGCCACCTAAGTTTTACACGATCAAAACGCTGAAAAGTGGTCTTAATATTTTTAGTAAATTTTGATAAAATACCATTTTTATTTTTCATTAAAAGTGGTAAAGATACATGATACAGATTAATATATCATTGTTCATAATAACACATCAAAATTGCAAACCTCTTAATTGTCACCACCCTAACATGCTAGATTAGGGTGATTTATCACTTGCCAACTTATTTTGAATAAGATATAAATTCTCTACTTTTAGTAGATTATGTTTCCATTCATGTCATAATTGTTGCTACTATTTCAGACCAGGGATAAATTACATCTACTTTTCCAACTCAAAATTAGCATGTAGGATTTATAAAAATTAAGTGTTCTCGTTTGAGAGTTAGAAAGTGAATACTCAATTGACTTTTGATCCATTTGGCAATAGAGAAAAGTTCAAAATTAGGTATGAGTTTGAGCAGTAGTGACTAATCCAGAAATTTTCGGTAGTGGGAGCAGTATGTACATATAAATTTCAAACAATACATATTTACAATTTTTTGTGAGTTCTCTTATTTCTAAATAAGATATAAATTCTCTATTTTGACGGTTATTGATGAAATCTCTTCTTTGCTTTTGATAAATGAAATCACTTGGGAAGAAAATGTCTTTAATATAACGTGTATATATTATCAGTAATTTAATTCTTAGTGAAATGTTAGTTTTAGTGAGGAGTTATGCTATTTCAAGGGAAAGAATTGATCACGAGCTGTTCATGAATTTCCTTGAACCGTTGGATTTGGTATTTGATGGAATACATGGGGGTTAAATAGTAAAGAGGTGGAGGGGAGATAAGTAACAGGCAAGCATCGTGATTTGTCGGGATAAAAAAATTTGCTGGAAGTAGCAATTCCGTTTAGTGAGATACCATACACTATTGATAATTAATACTACACATATATAAGCCTATAATTGTTGGACTGTTGGTGGAGAACCACTGAATAGGAAGGGTACCAAGAAAATATAAAACAAAGTGGGGGCACAAGGTTGCACAAGTGCCAACGTTTATCCGTCCCTGAGTTTGAGTGAGAGAATCGACAAATGTTTTTCCAATCATGATATCAAGGTGGACATTACTCTTTTTGAAGGAAAACTCCAATCTAATGAGATTGATGATTGGTTGCAATTTTTGAAAGAATATTTTTTTTTTAATTTTTTCTGGTTACAACTGTTGAAAAAAATATTTGAGTACAAGAATATAGCGAAAGAGATAAAGGTGAAAGTCGTTGTTGTGAAATTAAAGAAGCATGTTTCTATTTAGTGAGAGAACCTTAAAAAGATGCGAGCACGTGAAGGTAAGAGCAAGATCAAGAATTAGAAGAAAATGCGTCTAGAACTAACTAGCATGTTCTTGCCTTCTCACTATGACTTTATTCAACTTCGAATTCTTTATCAAAAGAACTTGCTTGTAGAAGAATACACCCAATAATATGATAAGTTAATGATGAAGTGTGACATTCATGTAACATACAATCACCTAAAAGCTTTTTACCTTGGAGAATTAAACAATGATATTCCTCATCATGAATATTTTACTCTTTGTTGATTATTGCACAAGATCTTCACTAGTTATACTTATTTTTCTCGTTCACATCAAAGATAATACTTGAATTTTTGTTTACATTTAATGAGCTGAATTTTGTTGTATAATAATAAGGTTTTGTTGATGTGATTGTTTGCAGCAAATGAGGCACTTGGCAATACTGCAAGCTTAGGAATTTTGCCCAACATGATATTGTATTTGATGGGACCTTTCAAGCTTCATCTTGGAGAAGCTAATCAAATACTCCTCTTATCTGCTGCAGCCAGCAAGTTCATGCCTGTGGTTGGTGCTTTTGTTGCAGATTCTTATCTCGGTCGATTCTTAAGTGTTGGATTAGGTTCTGCTGTCAGTTTCCTGGTATGTCTATATATTGAAATTCAATCAAATTTGTTATATATTCAATCAATACTTTGAACCTTGGTTTTAAATTACAGTTGCGGTCGTTGCGATTGTGATAATTATGGTTGATGTTAACGGCATTGCAACTGCTGGCAACTGCTGTGGCGTAAAATAATTTAAAATTTTCACAAACTATATAGTGTGACATGGGTGCCAATAAACTATTTACCTATGAAGCATGAATACAAAACACAAACATTGGACACGACACAAACACTGACACGTTGACATTGCTAATAATTTAAGAAAATCACATAATTTTGTGTAATTACATGTGCCGGCGTCGTGTCAGTGTCAGACACGTGTCCAACACCGGGACACGCCTAACCCGAGGAGTGTATGTGCTTCTTAGCTATTTACCCACCATAGCAATCTTAGTTTACCTTGTAAATAGGGATTGAGGGGGTGCTTTAGATACACAATTGAAAGACTACAAACCATAAGTTTTTTCATTGGATAATAAGTAGATTGAGATTTGATGTCTGAAGTTTTAGTTTTTATTTTTGGGAAGATTTGAACGAACATGGCCGAAATTGTGTGATGCTTATCCTGATGCAGTTACAGTGTGGTTATACACGTACGTAGAGGCTAGCAGTTACAATGTGGCCGAAGTTCACACCGCAGTTGCGGTGTGATGCCATCATAGAGGCTAGCGCATCAGCAATATTTCAACCGCAATTGCGGATACAGACCACAATTTGAAATCATATGCCCTGAGCTGAACCTCATGATGAAATAAGAAAAGTTGGTAACAAATTATCCTTATTCTTATTCGTTGTTACAGGGAATGGCATTGTTGTGGTTAACAGCAATGATCAAACCAACGGAAGGCGATCAATCACCAACATCATGGGAAATGGCAATGTTAATATCTGCCTTTAGTCTCATGTCAATTGCAGGTGCTGGTGTTTCATGTTCCATGGCATTTGGTGCAGACCAAGTAAATATAAAAGATAACCCTAATAACAATAGGGTCTTGGAAATGTTTTTCAACTGGTATTATGCTTTTGCAAGTATCTCTGCGATAATAGCTCTCACTGTAATAGTATATATCCAAGATCATTTTGGTTGGGAAATTGGTTTTGGAGTTCCAACAGCACTCATGTTTTTATCCACACTGTTATTCTTTCTTGCTTCTCCTCTTTATGTAAAGATTCAAAAAAGAACCAACTTGTTCGCTAGTTTTGCGCAAGTAATCGTTGCTTCCTATAACAACAGAAAACTTCCATTACCGCCTAAAAATTCACCTCAATTTTACCATCACAACAAGGACTCAAATCTCGTGGTTCCAACTGATAAACTAAGGTAGGTTTTTCTTTTTATCATTTGCATATTCCATAAATTTTGGTGAAATATTCGGAACTAACTTTTATATCTCAGGTTTCTGAACAAAGCTTGTGTTATTAAGGAATTTGAACAAGATATTGCATGTGATGGTTCAAGAATAAACCCCTGGAATCTATGCACAGTAGATCAAGTAGAAGAATTAAAAGCCATTGTGAGAGTTATTCCATTATGGTCTAGTGGGATCATGATGACCCTTAGCATTGGAGGCTCATTTTCATTGCTTCAAGCTAAAACCTTGAACAGACATATCACCTCCAACTTTGAAGTTCCAGCGGGATCTTTGAGCGTTATCAATATAGGTACGGTAATTATATGGATAGTTTTCTATGACCGCGTTCTTATTCCTTTAGCATCGAAGATAAGAGGGAAACCAGTTACGATCAGTGCAAAGAAAAGAATGGGAATTGGTTTGTTTTTATCTTTTCTCTACTCGGTAAATGCAGCGATTTTTGAGACTATAAGGAGAAGAAATGCGAACGATGGTGTTTTGGAAATGTCGGCATTGTGGCTTGCACCTCAACTTTGTCTGGCTGGTATATCTGAAGCAGTCAATTTCATAGGCCAAAATGAGTTTTATTACACAGAGTTTCCAAGTACTATGTCTAGTGTTGCTGCTTCGCTTTCTGGATTAGGAATGGCTGCAGGAAGCTTGGTGTCTTCTTTGTTGTTCAGCATTGTAGAAAACACTACTTCAAGAGGAGGAAATGATGGGTGGATTTCTGATGATATTAACAAGGGTCATTTTGACAAGTACTCTTGGCTTATAGCTGGAGTTAGTGCTCTTAATATACTCTATTATCTAGTTTGCAGTTGGGCTTATGGACCTGCAGTTGAAGAGTTAACTAATGATTAA

Protein sequence

>MS.gene41062.t1

MTMSIYVPLQQEDPDDEYPNQKVDKEAQYSGDADEMVSQPQRSKGGLITMPFIIANEALGNTASLGILPNMILYLMGPFKLHLGEANQILLLSAAASKFMPVVGAFVADSYLGRFLSVGLGSAVSFLGMALLWLTAMIKPTEGDQSPTSWEMAMLISAFSLMSIAGAGVSCSMAFGADQVNIKDNPNNNRVLEMFFNWYYAFASISAIIALTVIVYIQDHFGWEIGFGVPTALMFLSTLLFFLASPLYVKIQKRTNLFASFAQVIVASYNNRKLPLPPKNSPQFYHHNKDSNLVVPTDKLRFLNKACVIKEFEQDIACDGSRINPWNLCTVDQVEELKAIVRVIPLWSSGIMMTLSIGGSFSLLQAKTLNRHITSNFEVPAGSLSVINIGTVIIWIVFYDRVLIPLASKIRGKPVTISAKKRMGIGLFLSFLYSVNAAIFETIRRRNANDGVLEMSALWLAPQLCLAGISEAVNFIGQNEFYYTEFPSTMSSVAASLSGLGMAAGSLVSSLLFSIVENTTSRGGNDGWISDDINKGHFDKYSWLIAGVSALNILYYLVCSWAYGPAVEELTND