AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47798


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47798.t1 MTR_2g101560 95.761 637 26 1 1 636 1 637 0.0 1197
MS.gene47798.t1 MTR_2g101610 84.591 636 98 0 1 636 1 636 0.0 1100
MS.gene47798.t1 MTR_2g101590 83.176 636 106 1 1 636 1 635 0.0 1079
MS.gene47798.t1 MTR_2g101640 79.154 638 120 5 1 636 1 627 0.0 1044
MS.gene47798.t1 MTR_4g011280 66.444 599 188 6 1 592 1 593 0.0 813
MS.gene47798.t1 MTR_1g057460 68.522 575 156 5 1 575 24 573 0.0 806
MS.gene47798.t1 MTR_1g057460 69.098 521 142 3 55 575 1 502 0.0 746
MS.gene47798.t1 MTR_0236s0050 69.098 521 142 3 55 575 1 502 0.0 725
MS.gene47798.t1 MTR_2g101650 55.822 584 247 6 1 580 1 577 0.0 683
MS.gene47798.t1 MTR_8g103233 46.632 579 296 6 16 586 6 579 0.0 534
MS.gene47798.t1 MTR_1g009200 47.804 592 292 8 5 584 1 587 4.57e-179 521
MS.gene47798.t1 MTR_1g026740 46.333 559 286 7 14 568 7 555 1.69e-176 513
MS.gene47798.t1 MTR_1g026750 47.405 578 283 9 14 586 8 569 2.31e-171 500
MS.gene47798.t1 MTR_1g026770 45.660 576 293 9 15 586 6 565 2.69e-165 484
MS.gene47798.t1 MTR_5g038060 36.457 587 348 11 15 585 19 596 4.95e-128 390
MS.gene47798.t1 MTR_4g107580 35.140 609 364 11 9 602 7 599 4.22e-123 377
MS.gene47798.t1 MTR_4g107510 36.637 565 346 7 11 566 20 581 4.87e-122 375
MS.gene47798.t1 MTR_5g055000 34.669 574 355 9 25 589 16 578 2.14e-117 362
MS.gene47798.t1 MTR_8g469480 35.965 570 341 10 30 583 41 602 1.40e-116 360
MS.gene47798.t1 MTR_7g088790 33.895 593 367 12 15 593 17 598 7.75e-116 359
MS.gene47798.t1 MTR_7g088820 32.945 601 378 12 10 598 8 595 1.11e-113 353
MS.gene47798.t1 MTR_4g107530 34.583 587 362 12 14 581 15 598 2.79e-113 352
MS.gene47798.t1 MTR_7g088825 32.776 598 377 13 17 600 12 598 3.61e-113 352
MS.gene47798.t1 MTR_8g469470 34.744 567 351 11 14 566 17 578 3.18e-109 341
MS.gene47798.t1 MTR_5g038190 34.215 567 348 13 14 566 10 565 1.70e-106 333
MS.gene47798.t1 MTR_3g462710 34.601 552 338 12 25 566 22 560 7.07e-102 322
MS.gene47798.t1 MTR_4g107610 31.667 600 385 12 14 601 18 604 1.88e-97 311
MS.gene47798.t1 MTR_1g009170 41.084 443 192 11 154 593 9 385 1.59e-96 301
MS.gene47798.t1 MTR_7g088820 31.868 546 347 12 65 598 1 533 3.64e-96 305
MS.gene47798.t1 MTR_4g015080 33.877 552 340 12 25 566 32 568 6.04e-96 306
MS.gene47798.t1 MTR_7g067010 32.743 565 346 11 15 560 3 552 3.82e-94 301
MS.gene47798.t1 MTR_7g064780 30.537 596 381 12 14 586 3 588 3.75e-92 296
MS.gene47798.t1 MTR_7g064800 31.325 581 370 14 25 589 24 591 5.50e-90 291
MS.gene47798.t1 MTR_5g012270 31.162 568 364 15 25 579 26 579 2.62e-88 286
MS.gene47798.t1 MTR_3g112460 32.297 579 352 12 25 594 21 568 7.41e-88 285
MS.gene47798.t1 MTR_3g112450 33.333 600 353 15 7 594 6 570 1.78e-87 284
MS.gene47798.t1 MTR_3g112470 32.124 579 353 12 25 594 21 568 2.34e-87 283
MS.gene47798.t1 MTR_2g093160 33.735 581 333 16 1 566 1 544 9.36e-86 278
MS.gene47798.t1 MTR_7g088820 31.440 493 313 12 118 598 6 485 5.25e-85 275
MS.gene47798.t1 MTR_2g093180 33.564 578 339 14 1 566 1 545 1.95e-84 275
MS.gene47798.t1 MTR_2g093640 34.242 587 322 17 1 566 1 544 7.48e-84 273
MS.gene47798.t1 MTR_7g006540 32.378 593 353 15 29 592 65 638 1.62e-83 275
MS.gene47798.t1 MTR_3g462710 35.129 464 278 12 113 566 1 451 1.13e-82 268
MS.gene47798.t1 MTR_7g098200 31.389 583 363 13 36 600 38 601 1.79e-82 271
MS.gene47798.t1 MTR_7g098200 31.652 575 362 13 36 600 38 591 2.28e-82 271
MS.gene47798.t1 MTR_5g012290 29.021 572 369 12 14 566 14 567 6.69e-82 270
MS.gene47798.t1 MTR_4g033315 31.469 572 352 14 4 566 10 550 2.13e-81 267
MS.gene47798.t1 MTR_4g033310 31.469 572 352 14 4 566 10 550 2.13e-81 267
MS.gene47798.t1 MTR_7g098220 31.311 610 379 16 11 604 12 597 3.53e-81 268
MS.gene47798.t1 MTR_1g075440 30.676 577 366 13 26 585 26 585 7.40e-81 267
MS.gene47798.t1 MTR_4g033325 31.944 576 342 14 4 566 10 548 2.85e-80 265
MS.gene47798.t1 MTR_4g101380 30.637 581 371 13 25 588 24 589 4.20e-80 265
MS.gene47798.t1 MTR_3g069500 29.519 603 386 13 1 589 1 578 4.85e-80 265
MS.gene47798.t1 MTR_5g085850 30.619 565 358 11 29 584 32 571 1.10e-79 264
MS.gene47798.t1 MTR_7g098040 31.029 593 373 16 26 600 32 606 6.93e-79 262
MS.gene47798.t1 MTR_7g098220 31.359 574 356 14 45 604 4 553 1.01e-78 260
MS.gene47798.t1 MTR_3g005010 31.047 554 339 10 25 570 28 546 2.65e-78 259
MS.gene47798.t1 MTR_1g041815 31.597 576 360 13 36 596 36 592 4.30e-78 259
MS.gene47798.t1 MTR_3g069420 32.092 564 353 14 36 588 43 587 4.78e-78 259
MS.gene47798.t1 MTR_3g069440 29.617 574 381 11 24 589 29 587 4.88e-78 259
MS.gene47798.t1 MTR_1g041835 31.127 559 353 12 36 579 36 577 4.90e-78 259
MS.gene47798.t1 MTR_7g098180 31.005 587 366 14 21 587 23 590 8.21e-78 259
MS.gene47798.t1 MTR_7g098090 30.318 597 372 14 26 598 31 607 1.60e-77 258
MS.gene47798.t1 MTR_4g019580 30.354 537 353 12 36 566 45 566 2.26e-77 258
MS.gene47798.t1 MTR_7g098160 30.156 577 373 12 36 598 42 602 2.41e-77 258
MS.gene47798.t1 MTR_4g114340 29.492 590 398 11 1 586 1 576 2.51e-77 257
MS.gene47798.t1 MTR_3g072300 31.193 545 342 15 36 566 33 558 3.19e-77 257
MS.gene47798.t1 MTR_7g098230 30.944 572 357 14 41 594 40 591 3.28e-77 257
MS.gene47798.t1 MTR_0294s0020 30.890 573 352 14 4 566 10 548 1.65e-76 254
MS.gene47798.t1 MTR_3g014790 31.041 567 331 13 21 563 11 541 3.30e-76 254
MS.gene47798.t1 MTR_4g033330 30.948 559 340 15 4 551 10 533 1.27e-75 251
MS.gene47798.t1 MTR_1g042310 31.250 560 344 16 26 566 24 561 1.77e-75 253
MS.gene47798.t1 MTR_7g065080 29.442 591 367 17 2 577 9 564 2.16e-75 252
MS.gene47798.t1 MTR_1g042310 31.296 540 331 15 45 566 7 524 1.28e-73 247
MS.gene47798.t1 MTR_8g038880 31.304 575 348 10 28 587 21 563 5.28e-73 245
MS.gene47798.t1 MTR_7g005930 29.131 587 386 11 10 586 18 584 9.28e-73 245
MS.gene47798.t1 MTR_2g017750 28.571 602 402 14 1 584 11 602 9.79e-73 246
MS.gene47798.t1 MTR_1g042310 31.169 539 331 15 46 566 1 517 1.52e-72 244
MS.gene47798.t1 MTR_5g014150 29.061 554 380 8 37 582 54 602 3.26e-72 244
MS.gene47798.t1 MTR_3g100980 30.071 562 360 12 16 564 5 546 4.41e-72 243
MS.gene47798.t1 MTR_7g065080 29.944 531 322 16 85 601 2 496 3.67e-70 236
MS.gene47798.t1 MTR_2g005130 28.014 589 387 14 11 586 18 582 8.58e-70 238
MS.gene47798.t1 MTR_4g033375 31.115 511 318 10 11 514 15 498 1.13e-69 235
MS.gene47798.t1 MTR_4g033325 31.692 467 273 12 112 566 18 450 1.32e-69 233
MS.gene47798.t1 MTR_8g087780 29.848 593 380 15 15 579 2 586 1.87e-69 236
MS.gene47798.t1 MTR_1g085090 27.496 611 404 15 11 611 3 584 5.25e-69 236
MS.gene47798.t1 MTR_8g087810 30.626 591 379 16 15 579 2 587 3.55e-68 233
MS.gene47798.t1 MTR_1g041875 30.669 538 335 15 26 549 27 540 5.80e-68 232
MS.gene47798.t1 MTR_4g033325 32.644 435 258 11 144 566 13 424 9.75e-68 228
MS.gene47798.t1 MTR_7g098200 30.754 504 316 11 113 600 1 487 5.38e-67 227
MS.gene47798.t1 MTR_1g116930 29.049 568 366 13 15 566 8 554 8.72e-67 229
MS.gene47798.t1 MTR_4g033385 31.533 463 282 12 112 566 16 451 9.48e-67 226
MS.gene47798.t1 MTR_3g100980 28.644 590 360 13 16 564 5 574 2.13e-66 228
MS.gene47798.t1 MTR_7g111260 29.078 564 365 14 11 565 3 540 3.42e-66 228
MS.gene47798.t1 MTR_4g033395 30.577 520 327 12 2 514 6 498 5.32e-66 225
MS.gene47798.t1 MTR_1g041885 29.175 521 330 16 46 552 1 496 3.58e-64 221
MS.gene47798.t1 MTR_4g098800 28.358 536 363 8 37 563 46 569 9.52e-64 221
MS.gene47798.t1 MTR_7g013270 29.114 553 362 10 26 566 89 623 3.19e-63 221
MS.gene47798.t1 MTR_4g098800 28.358 536 363 8 37 563 111 634 3.58e-63 221
MS.gene47798.t1 MTR_7g010820 29.004 562 364 15 1 544 2 546 5.67e-61 213
MS.gene47798.t1 MTR_4g107670 28.269 566 353 17 28 565 25 565 8.03e-61 213
MS.gene47798.t1 MTR_8g469310 26.998 563 362 14 28 565 27 565 3.40e-58 206
MS.gene47798.t1 MTR_5g038380 24.694 571 382 12 21 565 20 568 1.24e-54 196
MS.gene47798.t1 MTR_4g123537 27.336 578 377 17 9 571 23 572 1.34e-51 188
MS.gene47798.t1 MTR_7g098150 30.856 444 271 13 26 454 31 453 3.26e-51 184
MS.gene47798.t1 MTR_7g098210 28.517 526 274 14 46 561 1 434 1.35e-48 176
MS.gene47798.t1 MTR_6g008690 25.650 577 358 15 18 566 1 534 7.70e-47 174
MS.gene47798.t1 MTR_4g033310 30.462 325 205 6 247 566 178 486 4.54e-45 167
MS.gene47798.t1 MTR_4g033310 34.171 199 114 7 4 200 10 193 3.60e-16 82.0
MS.gene47798.t1 MTR_4g024930 25.818 550 361 15 29 566 38 552 2.53e-39 152
MS.gene47798.t1 MTR_7g052600 25.271 554 359 13 21 566 19 525 1.22e-38 150
MS.gene47798.t1 MTR_7g051880 24.343 571 377 13 4 566 2 525 9.21e-36 142
MS.gene47798.t1 MTR_7g051830 24.343 571 377 14 4 566 2 525 3.35e-34 137
MS.gene47798.t1 MTR_8g091265 39.695 131 71 5 294 420 3 129 3.36e-18 82.0
MS.gene47798.t1 MTR_7g064160 32.432 111 65 1 11 111 3 113 5.81e-14 69.3
MS.gene47798.t1 MTR_3g065350 25.749 167 112 3 336 500 1 157 3.52e-13 68.2
MS.gene47798.t1 MTR_4g033390 34.021 97 59 2 484 575 30 126 4.82e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47798.t1 AT1G52190 54.939 577 253 6 15 585 9 584 0.0 657
MS.gene47798.t1 AT3G16180 53.242 586 267 7 11 591 6 589 0.0 636
MS.gene47798.t1 AT1G69870 34.662 577 360 9 18 585 42 610 1.09e-119 369
MS.gene47798.t1 AT5G62680 37.333 600 352 14 9 593 25 615 5.16e-118 365
MS.gene47798.t1 AT1G68570 35.434 587 364 8 9 586 5 585 1.30e-115 358
MS.gene47798.t1 AT1G18880 34.549 576 355 10 30 594 22 586 9.68e-112 348
MS.gene47798.t1 AT3G47960 36.572 566 340 10 10 566 50 605 1.10e-111 349
MS.gene47798.t1 AT5G11570 38.787 544 249 11 28 567 14 477 6.40e-111 342
MS.gene47798.t1 AT1G27080 33.333 582 361 13 24 595 11 575 4.56e-106 333
MS.gene47798.t1 AT1G62200 35.079 573 345 10 1 562 25 581 1.32e-105 332
MS.gene47798.t1 AT1G68570 34.650 557 349 8 39 586 5 555 7.03e-104 327
MS.gene47798.t1 AT2G02040 33.857 573 356 11 5 566 18 578 4.80e-103 325
MS.gene47798.t1 AT3G54140 35.185 540 329 11 36 566 33 560 7.14e-101 319
MS.gene47798.t1 AT3G54140 35.185 540 329 11 36 566 33 560 7.14e-101 319
MS.gene47798.t1 AT1G62200 33.721 602 343 11 1 562 25 610 1.41e-100 320
MS.gene47798.t1 AT1G62200 33.721 602 343 11 1 562 39 624 2.05e-100 320
MS.gene47798.t1 AT5G01180 35.135 555 328 13 21 560 17 554 1.17e-99 316
MS.gene47798.t1 AT5G01180 35.135 555 328 13 21 560 17 554 1.17e-99 316
MS.gene47798.t1 AT5G01180 35.135 555 328 13 21 560 17 554 1.17e-99 316
MS.gene47798.t1 AT1G27080 33.273 550 340 13 56 595 1 533 2.02e-97 309
MS.gene47798.t1 AT5G28470 33.517 543 342 10 25 559 15 546 6.36e-97 308
MS.gene47798.t1 AT5G28470 33.333 543 341 11 25 559 15 544 4.06e-94 301
MS.gene47798.t1 AT3G45650 32.743 565 345 11 9 566 4 540 1.43e-91 294
MS.gene47798.t1 AT3G45660 32.675 557 346 12 14 566 8 539 3.50e-89 288
MS.gene47798.t1 AT3G45660 32.675 557 346 12 14 566 8 539 3.50e-89 288
MS.gene47798.t1 AT3G45660 32.675 557 346 12 14 566 29 560 6.28e-89 288
MS.gene47798.t1 AT3G54450 31.763 573 347 11 25 580 10 555 1.93e-87 283
MS.gene47798.t1 AT3G45650 31.303 591 345 12 9 566 4 566 4.71e-86 280
MS.gene47798.t1 AT3G45710 31.972 563 348 12 12 566 6 541 7.76e-86 279
MS.gene47798.t1 AT2G02020 31.685 546 324 10 25 566 40 540 7.99e-85 276
MS.gene47798.t1 AT1G69860 32.369 553 341 11 25 566 16 546 9.01e-85 276
MS.gene47798.t1 AT2G26690 30.192 573 383 10 13 581 10 569 1.42e-82 271
MS.gene47798.t1 AT3G45720 31.107 569 350 14 28 588 20 554 2.56e-80 265
MS.gene47798.t1 AT2G26690 30.642 545 361 10 41 581 5 536 1.07e-79 263
MS.gene47798.t1 AT5G46050 30.258 542 349 11 21 549 19 544 2.32e-79 263
MS.gene47798.t1 AT3G21670 29.431 598 392 12 11 599 12 588 7.57e-79 261
MS.gene47798.t1 AT2G26690 30.784 536 354 10 50 581 2 524 1.20e-77 257
MS.gene47798.t1 AT2G37900 29.455 550 355 12 24 563 34 560 2.43e-77 257
MS.gene47798.t1 AT1G12110 31.771 576 361 15 21 579 19 579 5.46e-77 256
MS.gene47798.t1 AT3G45680 30.810 568 356 12 7 566 1 539 1.01e-76 255
MS.gene47798.t1 AT1G22540 31.826 553 345 10 21 566 22 549 2.60e-76 254
MS.gene47798.t1 AT3G45700 30.319 564 346 12 11 566 5 529 1.84e-75 251
MS.gene47798.t1 AT1G72125 30.185 540 344 9 36 566 38 553 2.17e-74 249
MS.gene47798.t1 AT5G46040 30.857 525 336 11 36 549 36 544 2.22e-74 249
MS.gene47798.t1 AT1G33440 28.983 590 372 15 23 589 32 597 3.99e-74 249
MS.gene47798.t1 AT5G13400 31.228 570 361 11 29 582 66 620 9.16e-74 249
MS.gene47798.t1 AT2G40460 29.946 551 353 12 36 575 33 561 1.24e-73 248
MS.gene47798.t1 AT3G53960 27.915 609 400 14 10 594 6 599 4.38e-73 246
MS.gene47798.t1 AT2G37900 29.293 495 318 11 78 563 10 481 3.12e-71 239
MS.gene47798.t1 AT1G59740 28.998 569 368 14 11 563 23 571 2.71e-70 239
MS.gene47798.t1 AT1G72140 28.929 560 340 12 25 566 32 551 5.31e-70 237
MS.gene47798.t1 AT1G32450 28.147 572 388 9 37 592 47 611 2.79e-69 236
MS.gene47798.t1 AT2G02020 29.044 544 320 9 25 566 40 519 2.91e-69 234
MS.gene47798.t1 AT1G22550 29.948 581 362 13 2 566 5 556 6.75e-69 234
MS.gene47798.t1 AT1G72120 29.720 572 348 12 11 566 16 549 1.56e-67 231
MS.gene47798.t1 AT5G46050 30.942 446 285 8 113 549 1 432 6.49e-67 226
MS.gene47798.t1 AT1G22570 29.084 557 361 9 2 547 5 538 7.41e-67 229
MS.gene47798.t1 AT1G27040 28.832 548 358 10 29 565 29 555 3.82e-66 227
MS.gene47798.t1 AT1G27040 28.832 548 358 10 29 565 25 551 5.93e-66 226
MS.gene47798.t1 AT1G72130 28.261 552 342 10 25 566 23 530 2.50e-64 221
MS.gene47798.t1 AT1G22570 29.537 518 331 9 41 547 7 501 3.46e-64 221
MS.gene47798.t1 AT4G21680 27.304 586 383 14 3 566 6 570 5.63e-64 222
MS.gene47798.t1 AT1G27040 28.810 538 351 10 39 565 7 523 4.57e-63 218
MS.gene47798.t1 AT3G45690 28.980 559 322 15 15 566 6 496 9.72e-63 216
MS.gene47798.t1 AT5G19640 27.273 583 374 16 28 593 60 609 3.05e-58 206
MS.gene47798.t1 AT5G14940 26.270 571 367 12 25 572 5 544 1.16e-52 190
MS.gene47798.t1 AT1G69850 26.362 569 365 15 29 565 27 573 4.05e-52 189
MS.gene47798.t1 AT1G72130 28.406 433 266 9 144 566 14 412 1.87e-50 181
MS.gene47798.t1 AT1G72130 28.406 433 266 9 144 566 14 412 1.87e-50 181
MS.gene47798.t1 AT3G01350 25.694 576 374 16 25 572 5 554 3.17e-48 178
MS.gene47798.t1 AT5G62730 24.955 557 381 11 28 572 57 588 3.62e-47 175
MS.gene47798.t1 AT5G62730 24.954 549 375 11 36 572 6 529 9.41e-46 170
MS.gene47798.t1 AT3G25260 26.128 532 332 15 41 565 35 512 4.69e-45 168
MS.gene47798.t1 AT3G25280 25.385 520 335 14 52 565 46 518 6.33e-37 145
MS.gene47798.t1 AT2G38100 24.081 544 353 13 55 586 2 497 6.07e-29 121
MS.gene47798.t1 AT2G38100 24.081 544 353 13 55 586 18 513 1.59e-28 120
MS.gene47798.t1 AT2G38100 24.081 544 353 13 55 586 24 519 2.09e-28 120

Find 125 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAAAGCTCTATTGTTAT+TGG 0.116841 2.1:+3557031 None:intergenic
CTTTGTAATAAAACTCATTT+TGG 0.123205 2.1:+3556003 None:intergenic
GTCATTTCGACAAATATTTA+TGG 0.147038 2.1:-3555827 MS.gene47798:CDS
GATCATCTTGGTTGGAAAAT+TGG 0.157074 2.1:-3556933 MS.gene47798:CDS
AAATAAAGCTTGTGTTATTA+AGG 0.217505 2.1:-3556555 MS.gene47798:CDS
TTATCTTTGTAATACTTATA+TGG 0.221781 2.1:-3556295 MS.gene47798:CDS
GCTGAGGCATTCAATGTTAT+TGG 0.226194 2.1:-3556026 MS.gene47798:CDS
CAATGGAATAACTTTAATAA+TGG 0.287573 2.1:+3556448 None:intergenic
GCTTGCACCTTCACTTTGTT+TGG 0.290635 2.1:-3556057 MS.gene47798:CDS
TTTATTGCAGATTCTTATAT+TGG 0.292916 2.1:-3558164 MS.gene47798:CDS
CTTGGTTGGAAAATTGGTTT+TGG 0.297432 2.1:-3556927 MS.gene47798:CDS
TTCAAGATTAGTGAAGAAAA+TGG 0.297883 2.1:-3555570 MS.gene47798:CDS
CAAGTAGGAGGCTGCGTCGC+TGG 0.300060 2.1:+3557200 None:intergenic
ATTTCATGTTCTTTAGCATT+TGG 0.304538 2.1:-3557083 MS.gene47798:CDS
TTAGTATGCAGTTGGGCTTA+TGG 0.310648 2.1:-3555765 MS.gene47798:CDS
GCTGTCATAGCAGCTCTATT+TGG 0.312595 2.1:-3556972 MS.gene47798:CDS
GATAAGATACCAATGATAAA+AGG 0.324542 2.1:+3558431 None:intergenic
TGAAATGATATGTCTGTCTA+AGG 0.326067 2.1:+3556361 None:intergenic
GTTATTCCATTGTGGTCAAC+AGG 0.337103 2.1:-3556437 MS.gene47798:CDS
AAGGAGAAAGAAAGCAATTC+AGG 0.340505 2.1:-3556129 MS.gene47798:CDS
AGGTTCTATTATCAGTTTCC+TGG 0.349967 2.1:-3558120 MS.gene47798:intron
GCGTTAATTCTGATAGGAAT+TGG 0.359891 2.1:-3557116 MS.gene47798:CDS
TTTGCTGATATACAGCCTTC+AGG 0.359961 2.1:+3557167 None:intergenic
GAAACACTAGACATAGTCTT+TGG 0.360014 2.1:+3555975 None:intergenic
ATTAACATCGGAGGCTCGTT+TGG 0.361174 2.1:-3556401 MS.gene47798:CDS
CAACATGATATTGTATTTGA+TGG 0.361317 2.1:-3558273 MS.gene47798:CDS
GCACCTTCACTTTGTTTGGC+TGG 0.361719 2.1:-3556053 MS.gene47798:CDS
CCTCTTATCTTTGATGCTAA+AGG 0.364995 2.1:+3556245 None:intergenic
TCATTTCGACAAATATTTAT+GGG 0.366923 2.1:-3555826 MS.gene47798:CDS
AAAAGAAGACACCAAGTTTC+CGG 0.373199 2.1:+3555923 None:intergenic
AGTGTTTCTTCAGCACTCTC+TGG 0.375458 2.1:-3555960 MS.gene47798:CDS
CTAACCTTGTCATCAATTTG+TGG 0.379224 2.1:+3555660 None:intergenic
TTCCAATAACAATAGAGCTT+TGG 0.382182 2.1:-3557033 MS.gene47798:CDS
AGACCACCCTTGCTTCTTTG+TGG 0.395960 2.1:+3558464 None:intergenic
TCCAAAGTGAGTGAAGAAAA+TGG 0.396852 2.1:-3555723 MS.gene47798:CDS
CGATTCCTAGGTGTTGGAAT+AGG 0.398985 2.1:-3558140 MS.gene47798:CDS
TCTTATATTGGTCGATTCCT+AGG 0.404111 2.1:-3558152 MS.gene47798:CDS
TTCTTCAGCACTCTCTGGAT+TGG 0.405295 2.1:-3555955 MS.gene47798:CDS
CCTTTAGCATCAAAGATAAG+AGG 0.419532 2.1:-3556245 MS.gene47798:CDS
ATCAAATACAATATCATGTT+GGG 0.422265 2.1:+3558275 None:intergenic
AGGCTGCGTCGCTGGGATCA+TGG 0.429972 2.1:+3557208 None:intergenic
CTTTGGAAATATTCTTCACT+TGG 0.431586 2.1:-3557016 MS.gene47798:CDS
ATCAGCAAAACCAGGTCAAA+TGG 0.449605 2.1:-3557153 MS.gene47798:CDS
CCAAGTCCCATTCTTATCTT+CGG 0.449902 2.1:+3556203 None:intergenic
TGTATTATTTAGTATGCAGT+TGG 0.452225 2.1:-3555773 MS.gene47798:CDS
CTCTCTGCGTTAATTCTGAT+AGG 0.460782 2.1:-3557122 MS.gene47798:CDS
GGCAATGGCTGCCGGAAACT+TGG 0.462855 2.1:-3555934 MS.gene47798:CDS
TGCTGCTGATGAAGAAGAAA+TGG 0.464327 2.1:-3558501 MS.gene47798:CDS
CCGAAGATAAGAATGGGACT+TGG 0.464562 2.1:-3556203 MS.gene47798:CDS
AAGTAGGAGGCTGCGTCGCT+GGG 0.464764 2.1:+3557201 None:intergenic
AAATATTTATGGGTTATAGC+TGG 0.467548 2.1:-3555816 MS.gene47798:CDS
ACTTCAAGTGGAGGAAAAGA+TGG 0.470588 2.1:-3555876 MS.gene47798:CDS
TAGTGAAGAAAATGGCTTGA+AGG 0.470983 2.1:-3555562 MS.gene47798:CDS
GCAATAAAAGCAGCAACAAC+AGG 0.471001 2.1:+3558179 None:intergenic
ATTCTGATAGGAATTGGAAA+TGG 0.478772 2.1:-3557110 MS.gene47798:CDS
CTTGCTAGGATGGCAAGTAC+TGG 0.481516 2.1:-3558305 MS.gene47798:CDS
TCTGGATTGGCAATGGCTGC+CGG 0.481828 2.1:-3555942 MS.gene47798:CDS
TTGTTCCAACTGATAGACTA+AGG 0.483967 2.1:-3556707 MS.gene47798:intron
TGAATTCAAGAATGGTGGTC+AGG 0.484071 2.1:-3555604 MS.gene47798:CDS
ATTGGTCGATTCCTAGGTGT+TGG 0.484458 2.1:-3558146 MS.gene47798:CDS
TAATGAGGCACTTGCTAGGA+TGG 0.505197 2.1:-3558315 MS.gene47798:CDS
GTATTATTTAGTATGCAGTT+GGG 0.508088 2.1:-3555772 MS.gene47798:CDS
ATCAGTCCGAAGATAAGAAT+GGG 0.508597 2.1:-3556209 MS.gene47798:CDS
CTTCTCATATCCTCTGCAGC+TGG 0.510191 2.1:-3558212 MS.gene47798:CDS
AAGTTCAAACTTTGAAGTAC+CGG 0.513148 2.1:-3556339 MS.gene47798:CDS
CATCAAATACAATATCATGT+TGG 0.518744 2.1:+3558274 None:intergenic
GATATAAGCATGAGTGCTGC+TGG 0.520880 2.1:+3556900 None:intergenic
TATCAGTCCGAAGATAAGAA+TGG 0.521040 2.1:-3556210 MS.gene47798:CDS
ATCTTCGGACTGATACTCAC+TGG 0.523009 2.1:+3556218 None:intergenic
AGCACTCTCTGGATTGGCAA+TGG 0.530645 2.1:-3555949 MS.gene47798:CDS
AACATGATATTGTATTTGAT+GGG 0.530924 2.1:-3558272 MS.gene47798:CDS
CAAAGAACCAGCTTGCTCAC+TGG 0.541714 2.1:-3556831 MS.gene47798:CDS
CTTTAGCATCAAAGATAAGA+GGG 0.548696 2.1:-3556244 MS.gene47798:CDS
CTGATAGGAATTGGAAATGG+TGG 0.549275 2.1:-3557107 MS.gene47798:CDS
ATTGAAAACACTACTTCAAG+TGG 0.549303 2.1:-3555888 MS.gene47798:CDS
TTGTTTGGCTGGTATAGCTG+AGG 0.550780 2.1:-3556042 MS.gene47798:CDS
ATTTATTGTTGAACCATCTG+AGG 0.553024 2.1:+3556514 None:intergenic
CAATCCACAAATTGATGACA+AGG 0.554131 2.1:-3555664 MS.gene47798:CDS
AGTAACATTGCCATTTGACC+TGG 0.557875 2.1:+3557143 None:intergenic
ATATAAGTATTACAAAGATA+AGG 0.558130 2.1:+3556297 None:intergenic
ATGGTTCAACAATAAATCGT+TGG 0.560017 2.1:-3556508 MS.gene47798:CDS
CAGCTAATGAGGCACTTGCT+AGG 0.560867 2.1:-3558319 MS.gene47798:CDS
GAGTAGCTGTAGCAAGATGA+AGG 0.565218 2.1:+3558240 None:intergenic
ATATCCAAGATCATCTTGGT+TGG 0.566372 2.1:-3556941 MS.gene47798:CDS
GGTGGATTGCTGCAAGTAGG+AGG 0.569731 2.1:+3557188 None:intergenic
GAGTTAACTGAATTCAAGAA+TGG 0.573785 2.1:-3555612 MS.gene47798:CDS
TCAAACTTTGAAGTACCGGC+AGG 0.576815 2.1:-3556335 MS.gene47798:CDS
TTGGATACTTGATCAGCTGT+AGG 0.577217 2.1:+3555741 None:intergenic
TGCAAAACCAGTGAGCAAGC+TGG 0.577546 2.1:+3556824 None:intergenic
GTATATATCCAAGATCATCT+TGG 0.577864 2.1:-3556945 MS.gene47798:CDS
TGAAGAAAATGGCTTGAAGG+AGG 0.581996 2.1:-3555559 MS.gene47798:CDS
CGAAGATAAGAATGGGACTT+GGG 0.582353 2.1:-3556202 MS.gene47798:CDS
GATTTCTGATAATATTAACA+AGG 0.582713 2.1:-3555850 MS.gene47798:CDS
AGGATGGCAAGTACTGGACT+TGG 0.587802 2.1:-3558299 MS.gene47798:CDS
TAGTGATGAAACTAGTTCAA+AGG 0.587940 2.1:-3555640 MS.gene47798:CDS
TGTGAAATTTCCAGCTGCAG+AGG 0.589353 2.1:+3558202 None:intergenic
AGAAAGAAAGCAATTCAGGC+AGG 0.591725 2.1:-3556125 MS.gene47798:CDS
TTATTAAAGTTATTCCATTG+TGG 0.594692 2.1:-3556445 MS.gene47798:CDS
GAGTGAAGAAAATGGTTCCA+AGG 0.598642 2.1:-3555715 MS.gene47798:CDS
CTTCAAGTGGAGGAAAAGAT+GGG 0.602416 2.1:-3555875 MS.gene47798:CDS
GATACCAATGATAAAAGGCA+TGG 0.603181 2.1:+3558436 None:intergenic
GTATACCTTAGTCTATCAGT+TGG 0.607004 2.1:+3556702 None:intergenic
GGCTGTATATCAGCAAAACC+AGG 0.607418 2.1:-3557161 MS.gene47798:CDS
TGCTATGACAGCTATAGTTG+TGG 0.614444 2.1:+3556983 None:intergenic
GAACAAGATATAGCCTCAGA+TGG 0.621248 2.1:-3556527 MS.gene47798:CDS
GCTGATATACAGCCTTCAGG+TGG 0.623699 2.1:+3557170 None:intergenic
TTAACTGAATTCAAGAATGG+TGG 0.626429 2.1:-3555609 MS.gene47798:CDS
AGCAAGAAAGAATAAGACAG+TGG 0.634801 2.1:+3556878 None:intergenic
ATTATAGTAAAAGATCCTGC+CGG 0.635315 2.1:+3556320 None:intergenic
GAAAACACTACTTCAAGTGG+AGG 0.636406 2.1:-3555885 MS.gene47798:CDS
TTATTCCATTGTGGTCAACA+GGG 0.637429 2.1:-3556436 MS.gene47798:CDS
ACTTGCAGCAATCCACCTGA+AGG 0.637785 2.1:-3557182 MS.gene47798:CDS
ATGATGGTAAAATTCAGGTG+AGG 0.641850 2.1:+3556749 None:intergenic
GCGATCCCTGTTGACCACAA+TGG 0.645059 2.1:+3556431 None:intergenic
ATCGCAATGTCTATTAACAT+CGG 0.651661 2.1:-3556413 MS.gene47798:CDS
ATTTCTGATAATATTAACAA+GGG 0.652732 2.1:-3555849 MS.gene47798:CDS
TCAGGTGGATTGCTGCAAGT+AGG 0.653513 2.1:+3557185 None:intergenic
ATACCAGCCAAACAAAGTGA+AGG 0.655978 2.1:+3556050 None:intergenic
AAACCACAAAGAAGCAAGGG+TGG 0.667497 2.1:-3558467 MS.gene47798:CDS
GCAATGTCTATTAACATCGG+AGG 0.673604 2.1:-3556410 MS.gene47798:CDS
CAAGTGGAGGAAAAGATGGG+TGG 0.675884 2.1:-3555872 MS.gene47798:CDS
TATAGGGAATGTCAATGCTG+TGG 0.699156 2.1:-3557238 MS.gene47798:intron
TGAAGAAAATGGTTCCAAGG+AGG 0.705179 2.1:-3555712 MS.gene47798:CDS
TAGAACCTATTCCAACACCT+AGG 0.705760 2.1:+3558135 None:intergenic
TGTTGAAAATGTCTGCAATG+TGG 0.749104 2.1:-3556079 MS.gene47798:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTTCAAAAAAAAAAAAAA+AGG + chr2.1:3556299-3556318 None:intergenic 10.0%
!! TGATTAATTAAAGATATATT+AGG - chr2.1:3556388-3556407 MS.gene47798:CDS 10.0%
!!! AATTAATATTCTGAAATTAT+TGG - chr2.1:3556769-3556788 MS.gene47798:CDS 10.0%
!! AATGAATATATAATATTACC+AGG + chr2.1:3555988-3556007 None:intergenic 15.0%
!! ATATAAGTATTACAAAGATA+AGG + chr2.1:3557793-3557812 None:intergenic 15.0%
!! ATATTATTAAGTCCAATTAT+GGG - chr2.1:3556070-3556089 MS.gene47798:CDS 15.0%
!! ATTTCTGATAATATTAACAA+GGG - chr2.1:3558238-3558257 MS.gene47798:CDS 15.0%
!! TATGAAAAAGAATCATATAA+AGG - chr2.1:3556713-3556732 MS.gene47798:CDS 15.0%
!! TTATCTTTGTAATACTTATA+TGG - chr2.1:3557792-3557811 MS.gene47798:intron 15.0%
!!! AATTTTCTTTTCTTTTAACT+TGG + chr2.1:3557036-3557055 None:intergenic 15.0%
!! AAACAAACAAACAAAAAAGA+AGG + chr2.1:3556820-3556839 None:intergenic 20.0%
!! AACATGATATTGTATTTGAT+GGG - chr2.1:3555815-3555834 MS.gene47798:CDS 20.0%
!! ATCAAATACAATATCATGTT+GGG + chr2.1:3555815-3555834 None:intergenic 20.0%
!! ATGAAATCAAACGTTTAATA+TGG + chr2.1:3557500-3557519 None:intergenic 20.0%
!! ATTGGTATAATGAAAAAAGT+TGG - chr2.1:3556787-3556806 MS.gene47798:CDS 20.0%
!! CAATGGAATAACTTTAATAA+TGG + chr2.1:3557642-3557661 None:intergenic 20.0%
!! CATATTATTAAGTCCAATTA+TGG - chr2.1:3556069-3556088 MS.gene47798:CDS 20.0%
!! CTCGAATATTTAATTGATAT+AGG + chr2.1:3556603-3556622 None:intergenic 20.0%
!! GATTTCTGATAATATTAACA+AGG - chr2.1:3558237-3558256 MS.gene47798:CDS 20.0%
!! TCATTTCGACAAATATTTAT+GGG - chr2.1:3558261-3558280 MS.gene47798:CDS 20.0%
!! TGAAATCAAACGTTTAATAT+GGG + chr2.1:3557499-3557518 None:intergenic 20.0%
!! TTATTAAAGTTATTCCATTG+TGG - chr2.1:3557642-3557661 MS.gene47798:intron 20.0%
!! TTTATTGCAGATTCTTATAT+TGG - chr2.1:3555923-3555942 MS.gene47798:CDS 20.0%
!!! AAAAGATAAGAAAAGTATCA+TGG + chr2.1:3556037-3556056 None:intergenic 20.0%
!!! AAATAAAGCTTGTGTTATTA+AGG - chr2.1:3557532-3557551 MS.gene47798:intron 20.0%
!!! CTTTATTTTTACTTTGAATG+AGG - chr2.1:3555705-3555724 MS.gene47798:CDS 20.0%
!!! CTTTGTAATAAAACTCATTT+TGG + chr2.1:3558087-3558106 None:intergenic 20.0%
!!! GTTTTTTAATTTTCTTCACT+TGG - chr2.1:3557910-3557929 MS.gene47798:intron 20.0%
!!! TAATTTTAAAAAGGAATCTG+AGG + chr2.1:3556668-3556687 None:intergenic 20.0%
!!! TGAAAGTTTTCTGTTTTTAT+AGG + chr2.1:3557305-3557324 None:intergenic 20.0%
!!! TGTTATTTGAACAAAAATTC+AGG - chr2.1:3557456-3557475 MS.gene47798:intron 20.0%
!!! TTTGTTTGTTTGTTGTTATA+GGG - chr2.1:3556833-3556852 MS.gene47798:CDS 20.0%
!!! TTTTTATGATGGTAAAATTC+AGG + chr2.1:3557346-3557365 None:intergenic 20.0%
! ATACAATTTACTCCCATAAT+TGG + chr2.1:3556085-3556104 None:intergenic 25.0%
! ATATGCAAAAGCTATAAAGA+TGG + chr2.1:3557410-3557429 None:intergenic 25.0%
! ATTTCATGTTCTTTAGCATT+TGG - chr2.1:3557004-3557023 MS.gene47798:CDS 25.0%
! CAACATGATATTGTATTTGA+TGG - chr2.1:3555814-3555833 MS.gene47798:CDS 25.0%
! CATCAAATACAATATCATGT+TGG + chr2.1:3555816-3555835 None:intergenic 25.0%
! GATAAGATACCAATGATAAA+AGG + chr2.1:3555659-3555678 None:intergenic 25.0%
! GTATCATGGAATGAAAAAAA+AGG + chr2.1:3556023-3556042 None:intergenic 25.0%
! GTATTATTTAGTATGCAGTT+GGG - chr2.1:3558315-3558334 MS.gene47798:CDS 25.0%
! GTCATTTCGACAAATATTTA+TGG - chr2.1:3558260-3558279 MS.gene47798:CDS 25.0%
! TCAAAATGTGACAATTCAAA+AGG + chr2.1:3556164-3556183 None:intergenic 25.0%
! TGCAAAAGTGACAATTATAA+AGG - chr2.1:3556203-3556222 MS.gene47798:CDS 25.0%
! TGTATTATTTAGTATGCAGT+TGG - chr2.1:3558314-3558333 MS.gene47798:CDS 25.0%
! TTCAAGATTAGTGAAGAAAA+TGG - chr2.1:3558517-3558536 MS.gene47798:CDS 25.0%
!! AAATATTTATGGGTTATAGC+TGG - chr2.1:3558271-3558290 MS.gene47798:CDS 25.0%
!! GGATTTTTGAATAATACTCA+TGG - chr2.1:3557983-3558002 MS.gene47798:intron 25.0%
!! TGTGTAATTTTCACATAAAG+AGG + chr2.1:3557238-3557257 None:intergenic 25.0%
!!! AAACGTTTGATTTCATTTTC+AGG - chr2.1:3557504-3557523 MS.gene47798:intron 25.0%
!!! GTTTGTTTGTTTGTTGTTAT+AGG - chr2.1:3556832-3556851 MS.gene47798:CDS 25.0%
AATCAATATGTTGTAGATCC+AGG + chr2.1:3556337-3556356 None:intergenic 30.0%
AGAAAGAATCACAAATCAAG+GGG + chr2.1:3556499-3556518 None:intergenic 30.0%
ATCGCAATGTCTATTAACAT+CGG - chr2.1:3557674-3557693 MS.gene47798:intron 30.0%
ATGGTTCAACAATAAATCGT+TGG - chr2.1:3557579-3557598 MS.gene47798:intron 30.0%
ATTATAGTAAAAGATCCTGC+CGG + chr2.1:3557770-3557789 None:intergenic 30.0%
ATTCTGATAGGAATTGGAAA+TGG - chr2.1:3556977-3556996 MS.gene47798:CDS 30.0%
ATTGAAAACACTACTTCAAG+TGG - chr2.1:3558199-3558218 MS.gene47798:CDS 30.0%
ATTTATTGTTGAACCATCTG+AGG + chr2.1:3557576-3557595 None:intergenic 30.0%
CTTTAGCATCAAAGATAAGA+GGG - chr2.1:3557843-3557862 MS.gene47798:intron 30.0%
GAACACTTGAATTGAATCTA+TGG - chr2.1:3556410-3556429 MS.gene47798:CDS 30.0%
GACAATTATAAAGGAACAGA+GGG - chr2.1:3556212-3556231 MS.gene47798:CDS 30.0%
GAGAAAGAATCACAAATCAA+GGG + chr2.1:3556500-3556519 None:intergenic 30.0%
GAGTTAACTGAATTCAAGAA+TGG - chr2.1:3558475-3558494 MS.gene47798:CDS 30.0%
GTATATATCCAAGATCATCT+TGG - chr2.1:3557142-3557161 MS.gene47798:CDS 30.0%
TAATCATACTTCAATGCAGA+AGG - chr2.1:3556244-3556263 MS.gene47798:CDS 30.0%
TAGTGATGAAACTAGTTCAA+AGG - chr2.1:3558447-3558466 MS.gene47798:CDS 30.0%
TGAAATGATATGTCTGTCTA+AGG + chr2.1:3557729-3557748 None:intergenic 30.0%
TGACAATTATAAAGGAACAG+AGG - chr2.1:3556211-3556230 MS.gene47798:CDS 30.0%
TGAGAAAGAATCACAAATCA+AGG + chr2.1:3556501-3556520 None:intergenic 30.0%
TTAACTGAATTCAAGAATGG+TGG - chr2.1:3558478-3558497 MS.gene47798:CDS 30.0%
TTCCAAAGCTCTATTGTTAT+TGG + chr2.1:3557059-3557078 None:intergenic 30.0%
TTCCAATAACAATAGAGCTT+TGG - chr2.1:3557054-3557073 MS.gene47798:CDS 30.0%
TTGAATATACGTACCAAGTT+TGG + chr2.1:3556751-3556770 None:intergenic 30.0%
TTTGTGATTCTTTCTCAACT+AGG - chr2.1:3556504-3556523 MS.gene47798:CDS 30.0%
! AGAAGCATATATGTATAACC+TGG - chr2.1:3556316-3556335 MS.gene47798:CDS 30.0%
! ATCTGAAACATAAAGAGAGA+CGG - chr2.1:3556455-3556474 MS.gene47798:CDS 30.0%
! CTTTGGAAATATTCTTCACT+TGG - chr2.1:3557071-3557090 MS.gene47798:CDS 30.0%
!! AAGTTCAAACTTTGAAGTAC+CGG - chr2.1:3557748-3557767 MS.gene47798:intron 30.0%
!! CAGCAATTTTTGAGAGTATA+AGG - chr2.1:3557939-3557958 MS.gene47798:intron 30.0%
!!! GATCTGAGTCTTTTTTATGA+TGG + chr2.1:3557357-3557376 None:intergenic 30.0%
AAAAGAAGACACCAAGTTTC+CGG + chr2.1:3558167-3558186 None:intergenic 35.0%
AAGGAGAAAGAAAGCAATTC+AGG - chr2.1:3557958-3557977 MS.gene47798:intron 35.0%
AATATACGTACCAAGTTTGG+TGG + chr2.1:3556748-3556767 None:intergenic 35.0%
AATCTATGGCTAAAGTCTGT+GGG - chr2.1:3556424-3556443 MS.gene47798:CDS 35.0%
ACAAAAACCACAAAGAAGCA+AGG - chr2.1:3555616-3555635 MS.gene47798:CDS 35.0%
AGCAAGAAAGAATAAGACAG+TGG + chr2.1:3557212-3557231 None:intergenic 35.0%
AGGTTCTATTATCAGTTTCC+TGG - chr2.1:3555967-3555986 MS.gene47798:CDS 35.0%
ATATCCAAGATCATCTTGGT+TGG - chr2.1:3557146-3557165 MS.gene47798:CDS 35.0%
ATCAGTCCGAAGATAAGAAT+GGG - chr2.1:3557878-3557897 MS.gene47798:intron 35.0%
ATGATGGTAAAATTCAGGTG+AGG + chr2.1:3557341-3557360 None:intergenic 35.0%
ATTGTCTTGCCTAAGACATA+TGG + chr2.1:3556533-3556552 None:intergenic 35.0%
CAAAAACCACAAAGAAGCAA+GGG - chr2.1:3555617-3555636 MS.gene47798:CDS 35.0%
CCTCTTATCTTTGATGCTAA+AGG + chr2.1:3557845-3557864 None:intergenic 35.0%
CCTTTAGCATCAAAGATAAG+AGG - chr2.1:3557842-3557861 MS.gene47798:intron 35.0%
CTAACCTTGTCATCAATTTG+TGG + chr2.1:3558430-3558449 None:intergenic 35.0%
GAAAAAAGTTCCACCAAACT+TGG - chr2.1:3556735-3556754 MS.gene47798:CDS 35.0%
GAAACACTAGACATAGTCTT+TGG + chr2.1:3558115-3558134 None:intergenic 35.0%
GACAATTCAAAAGGAAGAGA+GGG + chr2.1:3556155-3556174 None:intergenic 35.0%
GATACCAATGATAAAAGGCA+TGG + chr2.1:3555654-3555673 None:intergenic 35.0%
GATCATCTTGGTTGGAAAAT+TGG - chr2.1:3557154-3557173 MS.gene47798:CDS 35.0%
GCGTTAATTCTGATAGGAAT+TGG - chr2.1:3556971-3556990 MS.gene47798:CDS 35.0%
GTATACCTTAGTCTATCAGT+TGG + chr2.1:3557388-3557407 None:intergenic 35.0%
TAGTGAAGAAAATGGCTTGA+AGG - chr2.1:3558525-3558544 MS.gene47798:CDS 35.0%
TATCAGTCCGAAGATAAGAA+TGG - chr2.1:3557877-3557896 MS.gene47798:intron 35.0%
TCCAAAGTGAGTGAAGAAAA+TGG - chr2.1:3558364-3558383 MS.gene47798:intron 35.0%
TGACAATTCAAAAGGAAGAG+AGG + chr2.1:3556156-3556175 None:intergenic 35.0%
TGTTGAAAATGTCTGCAATG+TGG - chr2.1:3558008-3558027 MS.gene47798:intron 35.0%
TTATTCCATTGTGGTCAACA+GGG - chr2.1:3557651-3557670 MS.gene47798:intron 35.0%
TTGTTCCAACTGATAGACTA+AGG - chr2.1:3557380-3557399 MS.gene47798:intron 35.0%
! ACCATTTTCTTCACTCACTT+TGG + chr2.1:3558368-3558387 None:intergenic 35.0%
! CAATCCACAAATTGATGACA+AGG - chr2.1:3558423-3558442 MS.gene47798:intron 35.0%
! TCTTATATTGGTCGATTCCT+AGG - chr2.1:3555935-3555954 MS.gene47798:CDS 35.0%
! TTCAGTTGAATTTTCCTCCT+TGG + chr2.1:3558392-3558411 None:intergenic 35.0%
! TTTTCCAACCAAGATGATCT+TGG + chr2.1:3557153-3557172 None:intergenic 35.0%
!! CTTGGTTGGAAAATTGGTTT+TGG - chr2.1:3557160-3557179 MS.gene47798:CDS 35.0%
!!! TTTTGTTGTTGCAGCTAATG+AGG - chr2.1:3555757-3555776 MS.gene47798:CDS 35.0%
ACTAGGACTCCATATGTCTT+AGG - chr2.1:3556521-3556540 MS.gene47798:CDS 40.0%
ACTTCAAGTGGAGGAAAAGA+TGG - chr2.1:3558211-3558230 MS.gene47798:CDS 40.0%
AGAAAGAAAGCAATTCAGGC+AGG - chr2.1:3557962-3557981 MS.gene47798:intron 40.0%
ATACCAGCCAAACAAAGTGA+AGG + chr2.1:3558040-3558059 None:intergenic 40.0%
ATCAGCAAAACCAGGTCAAA+TGG - chr2.1:3556934-3556953 MS.gene47798:CDS 40.0%
CCAAGTCCCATTCTTATCTT+CGG + chr2.1:3557887-3557906 None:intergenic 40.0%
CGAAGATAAGAATGGGACTT+GGG - chr2.1:3557885-3557904 MS.gene47798:intron 40.0%
CTCTCTGCGTTAATTCTGAT+AGG - chr2.1:3556965-3556984 MS.gene47798:CDS 40.0%
CTGATAGGAATTGGAAATGG+TGG - chr2.1:3556980-3556999 MS.gene47798:CDS 40.0%
CTTCAAGTGGAGGAAAAGAT+GGG - chr2.1:3558212-3558231 MS.gene47798:CDS 40.0%
GAAAACACTACTTCAAGTGG+AGG - chr2.1:3558202-3558221 MS.gene47798:CDS 40.0%
GAACAAGATATAGCCTCAGA+TGG - chr2.1:3557560-3557579 MS.gene47798:intron 40.0%
GAATCTATGGCTAAAGTCTG+TGG - chr2.1:3556423-3556442 MS.gene47798:CDS 40.0%
GAGTGAAGAAAATGGTTCCA+AGG - chr2.1:3558372-3558391 MS.gene47798:intron 40.0%
GCAATAAAAGCAGCAACAAC+AGG + chr2.1:3555911-3555930 None:intergenic 40.0%
GCAATGTCTATTAACATCGG+AGG - chr2.1:3557677-3557696 MS.gene47798:intron 40.0%
GTTATTCCATTGTGGTCAAC+AGG - chr2.1:3557650-3557669 MS.gene47798:intron 40.0%
TAGAACCTATTCCAACACCT+AGG + chr2.1:3555955-3555974 None:intergenic 40.0%
TATAGGGAATGTCAATGCTG+TGG - chr2.1:3556849-3556868 MS.gene47798:CDS 40.0%
TGAAGAAAATGGCTTGAAGG+AGG - chr2.1:3558528-3558547 MS.gene47798:CDS 40.0%
TGAAGAAAATGGTTCCAAGG+AGG - chr2.1:3558375-3558394 MS.gene47798:intron 40.0%
TGAATTCAAGAATGGTGGTC+AGG - chr2.1:3558483-3558502 MS.gene47798:CDS 40.0%
TGCTATGACAGCTATAGTTG+TGG + chr2.1:3557107-3557126 None:intergenic 40.0%
TGCTGCTGATGAAGAAGAAA+TGG - chr2.1:3555586-3555605 MS.gene47798:CDS 40.0%
TTAGTATGCAGTTGGGCTTA+TGG - chr2.1:3558322-3558341 MS.gene47798:intron 40.0%
TTGGATACTTGATCAGCTGT+AGG + chr2.1:3558349-3558368 None:intergenic 40.0%
TTTGCTGATATACAGCCTTC+AGG + chr2.1:3556923-3556942 None:intergenic 40.0%
! AATTCAGGTGAGGTTTTCGA+TGG + chr2.1:3557331-3557350 None:intergenic 40.0%
! AGTAACATTGCCATTTGACC+TGG + chr2.1:3556947-3556966 None:intergenic 40.0%
! GCTGAGGCATTCAATGTTAT+TGG - chr2.1:3558061-3558080 MS.gene47798:intron 40.0%
! GTCACCATGCCTTTTATCAT+TGG - chr2.1:3555647-3555666 MS.gene47798:CDS 40.0%
AAACCACAAAGAAGCAAGGG+TGG - chr2.1:3555620-3555639 MS.gene47798:CDS 45.0%
AGTGTTTCTTCAGCACTCTC+TGG - chr2.1:3558127-3558146 MS.gene47798:CDS 45.0%
ATCTTCGGACTGATACTCAC+TGG + chr2.1:3557872-3557891 None:intergenic 45.0%
ATTAACATCGGAGGCTCGTT+TGG - chr2.1:3557686-3557705 MS.gene47798:intron 45.0%
CCGAAGATAAGAATGGGACT+TGG - chr2.1:3557884-3557903 MS.gene47798:intron 45.0%
GAGTAGCTGTAGCAAGATGA+AGG + chr2.1:3555850-3555869 None:intergenic 45.0%
GCTGTCATAGCAGCTCTATT+TGG - chr2.1:3557115-3557134 MS.gene47798:CDS 45.0%
GCTTGCACCTTCACTTTGTT+TGG - chr2.1:3558030-3558049 MS.gene47798:intron 45.0%
GGCTGTATATCAGCAAAACC+AGG - chr2.1:3556926-3556945 MS.gene47798:CDS 45.0%
TGTGAAATTTCCAGCTGCAG+AGG + chr2.1:3555888-3555907 None:intergenic 45.0%
TTCTTCAGCACTCTCTGGAT+TGG - chr2.1:3558132-3558151 MS.gene47798:CDS 45.0%
TTGTTTGGCTGGTATAGCTG+AGG - chr2.1:3558045-3558064 MS.gene47798:intron 45.0%
! ATTGGTCGATTCCTAGGTGT+TGG - chr2.1:3555941-3555960 MS.gene47798:CDS 45.0%
! GATATAAGCATGAGTGCTGC+TGG + chr2.1:3557190-3557209 None:intergenic 45.0%
! TAATGAGGCACTTGCTAGGA+TGG - chr2.1:3555772-3555791 MS.gene47798:CDS 45.0%
!! CGATTCCTAGGTGTTGGAAT+AGG - chr2.1:3555947-3555966 MS.gene47798:CDS 45.0%
!! TCAAACTTTGAAGTACCGGC+AGG - chr2.1:3557752-3557771 MS.gene47798:intron 45.0%
!!! ATCATTTTTTAATTTTAAAA+AGG + chr2.1:3556677-3556696 None:intergenic 5.0%
!!! TAATATTATATATTCATTTT+TGG - chr2.1:3555990-3556009 MS.gene47798:CDS 5.0%
ACTTGCAGCAATCCACCTGA+AGG - chr2.1:3556905-3556924 MS.gene47798:CDS 50.0%
AGACCACCCTTGCTTCTTTG+TGG + chr2.1:3555626-3555645 None:intergenic 50.0%
CAAGTGGAGGAAAAGATGGG+TGG - chr2.1:3558215-3558234 MS.gene47798:CDS 50.0%
CTTCTCATATCCTCTGCAGC+TGG - chr2.1:3555875-3555894 MS.gene47798:CDS 50.0%
CTTGCTAGGATGGCAAGTAC+TGG - chr2.1:3555782-3555801 MS.gene47798:CDS 50.0%
GCTGATATACAGCCTTCAGG+TGG + chr2.1:3556920-3556939 None:intergenic 50.0%
TGCAAAACCAGTGAGCAAGC+TGG + chr2.1:3557266-3557285 None:intergenic 50.0%
! CAAAGAACCAGCTTGCTCAC+TGG - chr2.1:3557256-3557275 MS.gene47798:intron 50.0%
! CAGCTAATGAGGCACTTGCT+AGG - chr2.1:3555768-3555787 MS.gene47798:CDS 50.0%
! GCACCTTCACTTTGTTTGGC+TGG - chr2.1:3558034-3558053 MS.gene47798:intron 50.0%
!! AGCACTCTCTGGATTGGCAA+TGG - chr2.1:3558138-3558157 MS.gene47798:CDS 50.0%
!! AGGATGGCAAGTACTGGACT+TGG - chr2.1:3555788-3555807 MS.gene47798:CDS 50.0%
!! TCAGGTGGATTGCTGCAAGT+AGG + chr2.1:3556905-3556924 None:intergenic 50.0%
GCGATCCCTGTTGACCACAA+TGG + chr2.1:3557659-3557678 None:intergenic 55.0%
!! GGTGGATTGCTGCAAGTAGG+AGG + chr2.1:3556902-3556921 None:intergenic 55.0%
!! TCTGGATTGGCAATGGCTGC+CGG - chr2.1:3558145-3558164 MS.gene47798:CDS 55.0%
AAGTAGGAGGCTGCGTCGCT+GGG + chr2.1:3556889-3556908 None:intergenic 60.0%
GGCAATGGCTGCCGGAAACT+TGG - chr2.1:3558153-3558172 MS.gene47798:CDS 60.0%
AGGCTGCGTCGCTGGGATCA+TGG + chr2.1:3556882-3556901 None:intergenic 65.0%
CAAGTAGGAGGCTGCGTCGC+TGG + chr2.1:3556890-3556909 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 3555554 3558555 3555554 ID=MS.gene47798
chr2.1 mRNA 3555554 3558555 3555554 ID=MS.gene47798.t1;Parent=MS.gene47798
chr2.1 exon 3558441 3558555 3558441 ID=MS.gene47798.t1.exon1;Parent=MS.gene47798.t1
chr2.1 CDS 3558441 3558555 3558441 ID=cds.MS.gene47798.t1;Parent=MS.gene47798.t1
chr2.1 exon 3558121 3558338 3558121 ID=MS.gene47798.t1.exon2;Parent=MS.gene47798.t1
chr2.1 CDS 3558121 3558338 3558121 ID=cds.MS.gene47798.t1;Parent=MS.gene47798.t1
chr2.1 exon 3556708 3557255 3556708 ID=MS.gene47798.t1.exon3;Parent=MS.gene47798.t1
chr2.1 CDS 3556708 3557255 3556708 ID=cds.MS.gene47798.t1;Parent=MS.gene47798.t1
chr2.1 exon 3555554 3556583 3555554 ID=MS.gene47798.t1.exon4;Parent=MS.gene47798.t1
chr2.1 CDS 3555554 3556583 3555554 ID=cds.MS.gene47798.t1;Parent=MS.gene47798.t1
Gene Sequence

>MS.gene47798

ATGGATAAGGAACTTCAACTTTGTTCAGTTGATGCTGCTGATGAAGAAGAAATGGTTTCTCAACAAAAACCACAAAGAAGCAAGGGTGGTCTTGTCACCATGCCTTTTATCATTGGTATCTTATCTATAACTTGCATGCATTTTTATTTTACTTTATTTTTACTTTGAATGAGGTTGAATTTTGATGTATAATATTAATATGATTTTGTTGTTGCAGCTAATGAGGCACTTGCTAGGATGGCAAGTACTGGACTTGGACCCAACATGATATTGTATTTGATGGGATCTTACAACCTTCATCTTGCTACAGCTACTCAGATACTTCTCATATCCTCTGCAGCTGGAAATTTCACACCTGTTGTTGCTGCTTTTATTGCAGATTCTTATATTGGTCGATTCCTAGGTGTTGGAATAGGTTCTATTATCAGTTTCCTGGTAATATTATATATTCATTTTTGGTTTACTTCCTTTTTTTTCATTCCATGATACTTTTCTTATCTTTTGACTTGAATATGCATATTATTAAGTCCAATTATGGGAGTAAATTGTATTTGAATTAATCACATACATAGAAGACATGCTCAATATAAATATTACACCCTCTCTTCCTTTTGAATTGTCACATTTTGACTTAGAAACAAAAATTTTATGCAAAAGTGACAATTATAAAGGAACAGAGGGAGTACACTTTAATCATACTTCAATGCAGAAGGAAAATAAAAAGATAAGCATATATGTATAACCTTTTTTTTTTTTTTTGAAAGAAGCATATATGTATAACCTGGATCTACAACATATTGATTTTTTTGTAATCAACAACAACATACAACATATTGATTAATTAAAGATATATTAGGAACACTTGAATTGAATCTATGGCTAAAGTCTGTGGGCGACAATGATCTGAAACATAAAGAGAGACGGATAATGTCATAACGAATGCCCCTTGATTTGTGATTCTTTCTCAACTAGGACTCCATATGTCTTAGGCAAGACAATACGCAGTGTGTCTGATATATTGAAGATCATTGTCTACATATAGTGAACCTATATCAATTAAATATTCGAGTAGTTAAATAAAATATTCAACTATGATATTCTGATTAATTCTCCTCAGATTCCTTTTTAAAATTAAAAAATGATATATTCACTTGTATTGTATGAAAAAGAATCATATAAAGGAAAAAAGTTCCACCAAACTTGGTACGTATATTCAATTAATATTCTGAAATTATTGGTATAATGAAAAAAGTTGGTAACGATCCTTCTTTTTTGTTTGTTTGTTTGTTTGTTGTTATAGGGAATGTCAATGCTGTGGTTAACAGCCATGATCCCAGCGACGCAGCCTCCTACTTGCAGCAATCCACCTGAAGGCTGTATATCAGCAAAACCAGGTCAAATGGCAATGTTACTCTCTGCGTTAATTCTGATAGGAATTGGAAATGGTGGTATTTCATGTTCTTTAGCATTTGGTGCAGACCAAGTTAAAAGAAAAGAAAATTCCAATAACAATAGAGCTTTGGAAATATTCTTCACTTGGTATTATGCTTCCACAACTATAGCTGTCATAGCAGCTCTATTTGGAATAGTATATATCCAAGATCATCTTGGTTGGAAAATTGGTTTTGGTGTTCCAGCAGCACTCATGCTTATATCCACTGTCTTATTCTTTCTTGCTTCTCCTCTTTATGTGAAAATTACACAAAGAACCAGCTTGCTCACTGGTTTTGCACAAGTATCTGTTGCTGCCTATAAAAACAGAAAACTTTCATTGCCATCGAAAACCTCACCTGAATTTTACCATCATAAAAAAGACTCAGATCTTCTTGTTCCAACTGATAGACTAAGGTATACCATCTTTATAGCTTTTGCATATTTTATACATACAGATTAAATCAGTTGTGTTATTTGAACAAAAATTCAGGTCGTACAAAAATCATTTCCCATATTAAACGTTTGATTTCATTTTCAGGTTTCTAAATAAAGCTTGTGTTATTAAGGATCACGAACAAGATATAGCCTCAGATGGTTCAACAATAAATCGTTGGAGTCTCTGCACAGTAGATCAAGTTGAAGAACTAAAAGCCATTATTAAAGTTATTCCATTGTGGTCAACAGGGATCGCAATGTCTATTAACATCGGAGGCTCGTTTGGATTGCTGCAAGCTAAATCCTTAGACAGACATATCATTTCAAGTTCAAACTTTGAAGTACCGGCAGGATCTTTTACTATAATCCTTATCTTTGTAATACTTATATGGATAGTTATCTATGATCGTGTTCTTATTCCTTTAGCATCAAAGATAAGAGGGAAACCAGTGAGTATCAGTCCGAAGATAAGAATGGGACTTGGGTTGTTTTTTAATTTTCTTCACTTGGTAGTTGCAGCAATTTTTGAGAGTATAAGGAGAAAGAAAGCAATTCAGGCAGGATTTTTGAATAATACTCATGGAGTGTTGAAAATGTCTGCAATGTGGCTTGCACCTTCACTTTGTTTGGCTGGTATAGCTGAGGCATTCAATGTTATTGGCCAAAATGAGTTTTATTACAAAGAGTTTCCAAAGACTATGTCTAGTGTTTCTTCAGCACTCTCTGGATTGGCAATGGCTGCCGGAAACTTGGTGTCTTCTTTTGTATTCAGCACTATTGAAAACACTACTTCAAGTGGAGGAAAAGATGGGTGGATTTCTGATAATATTAACAAGGGTCATTTCGACAAATATTTATGGGTTATAGCTGGAATTAATGTTCTTAATCTACTGTATTATTTAGTATGCAGTTGGGCTTATGGACCTACAGCTGATCAAGTATCCAAAGTGAGTGAAGAAAATGGTTCCAAGGAGGAAAATTCAACTGAATTCAAAAATGTCAATCCACAAATTGATGACAAGGTTAGTGATGAAACTAGTTCAAAGGAGAAAGAGTTAACTGAATTCAAGAATGGTGGTCAGGTTGAGAAAGTATTCAAGATTAGTGAAGAAAATGGCTTGAAGGAGGAATAG

Protein sequence

>MS.gene47798.t1

MDKELQLCSVDAADEEEMVSQQKPQRSKGGLVTMPFIIANEALARMASTGLGPNMILYLMGSYNLHLATATQILLISSAAGNFTPVVAAFIADSYIGRFLGVGIGSIISFLGMSMLWLTAMIPATQPPTCSNPPEGCISAKPGQMAMLLSALILIGIGNGGISCSLAFGADQVKRKENSNNNRALEIFFTWYYASTTIAVIAALFGIVYIQDHLGWKIGFGVPAALMLISTVLFFLASPLYVKITQRTSLLTGFAQVSVAAYKNRKLSLPSKTSPEFYHHKKDSDLLVPTDRLRFLNKACVIKDHEQDIASDGSTINRWSLCTVDQVEELKAIIKVIPLWSTGIAMSINIGGSFGLLQAKSLDRHIISSSNFEVPAGSFTIILIFVILIWIVIYDRVLIPLASKIRGKPVSISPKIRMGLGLFFNFLHLVVAAIFESIRRKKAIQAGFLNNTHGVLKMSAMWLAPSLCLAGIAEAFNVIGQNEFYYKEFPKTMSSVSSALSGLAMAAGNLVSSFVFSTIENTTSSGGKDGWISDNINKGHFDKYLWVIAGINVLNLLYYLVCSWAYGPTADQVSKVSEENGSKEENSTEFKNVNPQIDDKVSDETSSKEKELTEFKNGGQVEKVFKISEENGLKEE