AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85129


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85129.t1 MTR_2g101560 95.290 637 29 1 1 636 1 637 0.0 1192
MS.gene85129.t1 MTR_2g101610 84.277 636 100 0 1 636 1 636 0.0 1097
MS.gene85129.t1 MTR_2g101590 82.862 636 108 1 1 636 1 635 0.0 1075
MS.gene85129.t1 MTR_2g101640 78.840 638 122 5 1 636 1 627 0.0 1041
MS.gene85129.t1 MTR_4g011280 66.110 599 190 6 1 592 1 593 0.0 810
MS.gene85129.t1 MTR_1g057460 68.348 575 157 5 1 575 24 573 0.0 805
MS.gene85129.t1 MTR_1g057460 68.906 521 143 3 55 575 1 502 0.0 744
MS.gene85129.t1 MTR_0236s0050 68.906 521 143 3 55 575 1 502 0.0 723
MS.gene85129.t1 MTR_2g101650 55.479 584 249 6 1 580 1 577 0.0 680
MS.gene85129.t1 MTR_8g103233 46.459 579 297 6 16 586 6 579 0.0 532
MS.gene85129.t1 MTR_1g009200 47.466 592 294 8 5 584 1 587 2.68e-179 521
MS.gene85129.t1 MTR_1g026740 46.154 559 287 7 14 568 7 555 1.55e-176 513
MS.gene85129.t1 MTR_1g026750 47.232 578 284 9 14 586 8 569 2.10e-171 500
MS.gene85129.t1 MTR_1g026770 45.486 576 294 9 15 586 6 565 2.26e-165 485
MS.gene85129.t1 MTR_5g038060 36.457 587 348 11 15 585 19 596 1.07e-128 392
MS.gene85129.t1 MTR_4g107580 35.304 609 363 11 9 602 7 599 1.02e-124 382
MS.gene85129.t1 MTR_4g107510 36.460 565 347 7 11 566 20 581 1.24e-121 374
MS.gene85129.t1 MTR_5g055000 34.669 574 355 9 25 589 16 578 5.86e-118 363
MS.gene85129.t1 MTR_8g469480 35.965 570 341 10 30 583 41 602 2.81e-117 362
MS.gene85129.t1 MTR_7g088790 34.064 593 366 12 15 593 17 598 6.28e-117 362
MS.gene85129.t1 MTR_4g107530 34.753 587 361 12 14 581 15 598 2.13e-114 355
MS.gene85129.t1 MTR_7g088825 32.943 598 376 13 17 600 12 598 2.25e-114 355
MS.gene85129.t1 MTR_7g088820 32.945 601 378 12 10 598 8 595 2.86e-114 354
MS.gene85129.t1 MTR_8g469470 34.568 567 352 11 14 566 17 578 3.35e-109 341
MS.gene85129.t1 MTR_5g038190 34.392 567 347 13 14 566 10 565 4.98e-107 335
MS.gene85129.t1 MTR_3g462710 34.601 552 338 12 25 566 22 560 1.95e-102 323
MS.gene85129.t1 MTR_4g107610 31.553 599 387 11 14 601 18 604 1.66e-98 314
MS.gene85129.t1 MTR_4g015080 34.058 552 339 12 25 566 32 568 1.37e-97 310
MS.gene85129.t1 MTR_7g088820 32.051 546 346 12 65 598 1 533 1.82e-97 309
MS.gene85129.t1 MTR_1g009170 40.632 443 194 11 154 593 9 385 5.81e-96 300
MS.gene85129.t1 MTR_7g067010 32.743 565 346 11 15 560 3 552 8.49e-95 303
MS.gene85129.t1 MTR_7g064780 30.369 596 382 12 14 586 3 588 3.87e-92 296
MS.gene85129.t1 MTR_7g064800 31.153 581 371 14 25 589 24 591 4.80e-90 291
MS.gene85129.t1 MTR_5g012270 31.162 568 364 15 25 579 26 579 5.07e-89 288
MS.gene85129.t1 MTR_3g112460 32.297 579 352 12 25 594 21 568 1.31e-88 287
MS.gene85129.t1 MTR_3g112450 33.333 600 353 15 7 594 6 570 2.69e-88 286
MS.gene85129.t1 MTR_3g112470 32.124 579 353 12 25 594 21 568 6.01e-88 285
MS.gene85129.t1 MTR_7g088820 31.967 488 307 12 118 593 6 480 2.96e-86 278
MS.gene85129.t1 MTR_2g093160 33.735 581 333 17 1 566 1 544 1.78e-85 278
MS.gene85129.t1 MTR_2g093180 33.737 578 338 14 1 566 1 545 1.94e-85 278
MS.gene85129.t1 MTR_7g006540 32.492 594 351 16 29 592 65 638 1.05e-83 276
MS.gene85129.t1 MTR_2g093640 34.072 587 323 17 1 566 1 544 1.55e-83 273
MS.gene85129.t1 MTR_7g098200 31.389 583 363 13 36 600 38 601 2.63e-83 274
MS.gene85129.t1 MTR_7g098200 31.652 575 362 13 36 600 38 591 3.64e-83 273
MS.gene85129.t1 MTR_3g462710 35.129 464 278 12 113 566 1 451 5.07e-83 269
MS.gene85129.t1 MTR_5g012290 29.021 572 369 12 14 566 14 567 1.48e-82 271
MS.gene85129.t1 MTR_7g098220 31.311 610 379 16 11 604 12 597 9.86e-82 270
MS.gene85129.t1 MTR_1g075440 30.676 577 366 13 26 585 26 585 1.71e-81 269
MS.gene85129.t1 MTR_4g033315 31.294 572 353 14 4 566 10 550 2.55e-81 267
MS.gene85129.t1 MTR_4g033310 31.294 572 353 14 4 566 10 550 2.55e-81 267
MS.gene85129.t1 MTR_5g085850 31.139 562 359 10 29 584 32 571 3.77e-81 268
MS.gene85129.t1 MTR_3g069500 29.519 603 386 13 1 589 1 578 6.37e-81 267
MS.gene85129.t1 MTR_4g101380 30.637 581 371 13 25 588 24 589 6.67e-81 267
MS.gene85129.t1 MTR_4g033325 31.771 576 343 14 4 566 10 548 2.91e-80 264
MS.gene85129.t1 MTR_7g098040 31.029 593 373 16 26 600 32 606 1.56e-79 264
MS.gene85129.t1 MTR_7g098220 31.359 574 356 14 45 604 4 553 3.84e-79 261
MS.gene85129.t1 MTR_3g005010 31.227 554 338 10 25 570 28 546 4.81e-79 261
MS.gene85129.t1 MTR_4g019580 30.726 537 351 12 36 566 45 566 5.05e-79 262
MS.gene85129.t1 MTR_1g041815 31.597 576 360 13 36 596 36 592 6.77e-79 262
MS.gene85129.t1 MTR_3g069440 29.617 574 381 11 24 589 29 587 7.70e-79 261
MS.gene85129.t1 MTR_1g041835 31.127 559 353 12 36 579 36 577 7.96e-79 261
MS.gene85129.t1 MTR_3g069420 32.092 564 353 14 36 588 43 587 1.16e-78 261
MS.gene85129.t1 MTR_7g098180 31.005 587 366 14 21 587 23 590 2.37e-78 261
MS.gene85129.t1 MTR_7g098090 30.318 597 372 14 26 598 31 607 2.41e-78 261
MS.gene85129.t1 MTR_7g098160 30.272 588 379 13 26 598 31 602 4.18e-78 260
MS.gene85129.t1 MTR_3g072300 31.009 545 343 15 36 566 33 558 6.88e-78 259
MS.gene85129.t1 MTR_7g098230 31.119 572 356 14 41 594 40 591 8.91e-78 259
MS.gene85129.t1 MTR_4g114340 29.492 590 398 11 1 586 1 576 2.21e-77 257
MS.gene85129.t1 MTR_0294s0020 30.716 573 353 14 4 566 10 548 1.26e-76 254
MS.gene85129.t1 MTR_7g065080 29.655 580 360 16 2 566 9 555 2.12e-76 255
MS.gene85129.t1 MTR_1g042310 31.250 560 344 16 26 566 24 561 2.84e-76 255
MS.gene85129.t1 MTR_3g014790 30.742 566 334 12 21 563 11 541 5.01e-76 253
MS.gene85129.t1 MTR_4g033330 30.769 559 341 15 4 551 10 533 8.82e-76 252
MS.gene85129.t1 MTR_1g042310 31.296 540 331 15 45 566 7 524 2.04e-74 249
MS.gene85129.t1 MTR_8g038880 31.304 575 348 10 28 587 21 563 6.82e-74 248
MS.gene85129.t1 MTR_2g017750 28.571 602 402 14 1 584 11 602 2.07e-73 247
MS.gene85129.t1 MTR_1g042310 31.169 539 331 15 46 566 1 517 2.52e-73 246
MS.gene85129.t1 MTR_7g005930 29.131 587 386 11 10 586 18 584 2.24e-72 244
MS.gene85129.t1 MTR_5g014150 29.061 554 380 8 37 582 54 602 2.34e-72 244
MS.gene85129.t1 MTR_3g100980 29.715 562 362 12 16 564 5 546 3.93e-72 243
MS.gene85129.t1 MTR_2g005130 28.353 589 385 14 11 586 18 582 3.31e-71 241
MS.gene85129.t1 MTR_7g065080 30.132 531 321 16 85 601 2 496 4.52e-71 238
MS.gene85129.t1 MTR_4g033325 31.478 467 274 12 112 566 18 450 1.42e-69 233
MS.gene85129.t1 MTR_4g033375 30.920 511 319 10 11 514 15 498 1.44e-69 234
MS.gene85129.t1 MTR_8g087780 29.680 593 381 15 15 579 2 586 2.77e-69 236
MS.gene85129.t1 MTR_1g041875 30.669 538 335 15 26 549 27 540 7.15e-69 235
MS.gene85129.t1 MTR_1g085090 27.332 611 405 15 11 611 3 584 7.77e-69 235
MS.gene85129.t1 MTR_8g087810 30.457 591 380 16 15 579 2 587 5.76e-68 232
MS.gene85129.t1 MTR_7g098200 30.754 504 316 11 113 600 1 487 1.31e-67 229
MS.gene85129.t1 MTR_4g033325 31.954 435 261 10 144 566 13 424 3.23e-67 226
MS.gene85129.t1 MTR_1g116930 28.873 568 367 13 15 566 8 554 4.16e-67 230
MS.gene85129.t1 MTR_4g033385 31.317 463 283 12 112 566 16 451 1.39e-66 225
MS.gene85129.t1 MTR_3g100980 28.305 590 362 13 16 564 5 574 1.99e-66 228
MS.gene85129.t1 MTR_7g111260 28.901 564 366 14 11 565 3 540 3.02e-66 228
MS.gene85129.t1 MTR_4g033395 30.385 520 328 12 2 514 6 498 8.57e-66 224
MS.gene85129.t1 MTR_1g041885 29.367 521 329 16 46 552 1 496 3.32e-65 224
MS.gene85129.t1 MTR_4g098800 28.358 536 363 8 37 563 46 569 3.46e-64 222
MS.gene85129.t1 MTR_7g013270 29.114 553 362 10 26 566 89 623 7.31e-64 223
MS.gene85129.t1 MTR_4g098800 28.358 536 363 8 37 563 111 634 1.51e-63 222
MS.gene85129.t1 MTR_7g010820 28.826 562 365 15 1 544 2 546 2.29e-61 214
MS.gene85129.t1 MTR_4g107670 28.269 566 353 17 28 565 25 565 6.35e-61 213
MS.gene85129.t1 MTR_8g469310 26.998 563 362 14 28 565 27 565 1.59e-58 206
MS.gene85129.t1 MTR_5g038380 24.694 571 382 12 21 565 20 568 4.69e-55 197
MS.gene85129.t1 MTR_4g123537 27.431 576 379 16 9 571 23 572 2.65e-52 190
MS.gene85129.t1 MTR_7g098150 31.081 444 270 13 26 454 31 453 1.18e-51 186
MS.gene85129.t1 MTR_7g098210 28.517 526 274 14 46 561 1 434 2.34e-49 178
MS.gene85129.t1 MTR_6g008690 25.650 577 358 15 18 566 1 534 2.33e-47 175
MS.gene85129.t1 MTR_4g033310 30.462 325 205 6 247 566 178 486 3.99e-45 168
MS.gene85129.t1 MTR_4g033310 33.668 199 115 7 4 200 10 193 5.08e-16 81.6
MS.gene85129.t1 MTR_4g024930 25.636 550 362 15 29 566 38 552 3.78e-39 152
MS.gene85129.t1 MTR_7g052600 25.271 554 359 13 21 566 19 525 5.02e-39 151
MS.gene85129.t1 MTR_7g051880 24.343 571 377 13 4 566 2 525 7.34e-36 142
MS.gene85129.t1 MTR_7g051830 24.343 571 377 14 4 566 2 525 3.89e-34 137
MS.gene85129.t1 MTR_8g091265 39.695 131 71 5 294 420 3 129 3.33e-18 82.0
MS.gene85129.t1 MTR_7g064160 32.432 111 65 1 11 111 3 113 6.85e-14 68.9
MS.gene85129.t1 MTR_3g065350 25.749 167 112 3 336 500 1 157 3.36e-13 68.6
MS.gene85129.t1 MTR_4g033390 34.021 97 59 2 484 575 30 126 4.87e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85129.t1 AT1G52190 54.593 577 255 6 15 585 9 584 0.0 655
MS.gene85129.t1 AT3G16180 52.901 586 269 7 11 591 6 589 0.0 634
MS.gene85129.t1 AT1G69870 34.489 577 361 9 18 585 42 610 1.66e-119 369
MS.gene85129.t1 AT5G62680 37.167 600 353 14 9 593 25 615 1.66e-117 363
MS.gene85129.t1 AT1G68570 35.264 587 365 8 9 586 5 585 6.55e-116 359
MS.gene85129.t1 AT5G11570 38.971 544 248 11 28 567 14 477 7.81e-112 344
MS.gene85129.t1 AT1G18880 34.375 576 356 10 30 594 22 586 1.65e-111 347
MS.gene85129.t1 AT3G47960 36.396 566 341 10 10 566 50 605 3.61e-111 348
MS.gene85129.t1 AT1G62200 35.079 573 345 10 1 562 25 581 3.74e-106 333
MS.gene85129.t1 AT1G27080 33.333 582 361 13 24 595 11 575 3.76e-106 333
MS.gene85129.t1 AT1G68570 34.470 557 350 8 39 586 5 555 2.70e-104 328
MS.gene85129.t1 AT2G02040 33.857 573 356 11 5 566 18 578 7.94e-104 327
MS.gene85129.t1 AT3G54140 35.065 539 331 10 36 566 33 560 6.66e-102 322
MS.gene85129.t1 AT3G54140 35.065 539 331 10 36 566 33 560 6.66e-102 322
MS.gene85129.t1 AT1G62200 33.721 602 343 11 1 562 25 610 3.62e-101 321
MS.gene85129.t1 AT1G62200 33.721 602 343 11 1 562 39 624 4.31e-101 321
MS.gene85129.t1 AT5G01180 35.091 550 335 12 21 560 17 554 1.23e-100 318
MS.gene85129.t1 AT5G01180 35.091 550 335 12 21 560 17 554 1.23e-100 318
MS.gene85129.t1 AT5G01180 35.091 550 335 12 21 560 17 554 1.23e-100 318
MS.gene85129.t1 AT1G27080 33.636 550 338 13 56 595 1 533 1.20e-97 309
MS.gene85129.t1 AT5G28470 33.517 543 342 10 25 559 15 546 1.94e-97 310
MS.gene85129.t1 AT5G28470 33.333 543 341 11 25 559 15 544 1.11e-94 302
MS.gene85129.t1 AT3G45650 32.920 565 344 11 9 566 4 540 1.73e-92 296
MS.gene85129.t1 AT3G45660 32.316 557 348 11 14 566 8 539 3.84e-90 290
MS.gene85129.t1 AT3G45660 32.316 557 348 11 14 566 8 539 3.84e-90 290
MS.gene85129.t1 AT3G45660 32.316 557 348 11 14 566 29 560 6.63e-90 290
MS.gene85129.t1 AT3G54450 31.763 573 347 11 25 580 10 555 2.62e-87 283
MS.gene85129.t1 AT3G45650 31.472 591 344 12 9 566 4 566 5.98e-87 283
MS.gene85129.t1 AT3G45710 32.149 563 347 12 12 566 6 541 2.41e-86 280
MS.gene85129.t1 AT2G02020 31.685 546 324 10 25 566 40 540 1.24e-85 278
MS.gene85129.t1 AT1G69860 32.369 553 341 11 25 566 16 546 4.18e-85 277
MS.gene85129.t1 AT2G26690 30.017 573 384 10 13 581 10 569 4.71e-83 272
MS.gene85129.t1 AT3G45720 31.283 569 349 15 28 588 20 554 8.52e-81 266
MS.gene85129.t1 AT3G21670 29.766 598 390 12 11 599 12 588 3.47e-80 265
MS.gene85129.t1 AT2G26690 30.459 545 362 10 41 581 5 536 3.66e-80 264
MS.gene85129.t1 AT5G46050 30.258 542 349 11 21 549 19 544 7.35e-80 264
MS.gene85129.t1 AT2G37900 29.455 550 355 12 24 563 34 560 3.87e-78 259
MS.gene85129.t1 AT2G26690 30.597 536 355 10 50 581 2 524 4.24e-78 258
MS.gene85129.t1 AT1G12110 31.771 576 361 15 21 579 19 579 1.48e-77 258
MS.gene85129.t1 AT3G45680 30.810 568 356 12 7 566 1 539 2.62e-77 256
MS.gene85129.t1 AT3G45700 30.496 564 345 13 11 566 5 529 7.11e-76 253
MS.gene85129.t1 AT1G22540 31.646 553 346 10 21 566 22 549 1.50e-75 252
MS.gene85129.t1 AT5G46040 30.857 525 336 11 36 549 36 544 4.62e-75 251
MS.gene85129.t1 AT1G33440 28.983 590 372 15 23 589 32 597 1.62e-74 250
MS.gene85129.t1 AT1G72125 30.129 541 343 10 36 566 38 553 4.27e-74 248
MS.gene85129.t1 AT2G40460 29.764 551 354 12 36 575 33 561 5.18e-74 248
MS.gene85129.t1 AT3G53960 27.796 608 402 13 10 594 6 599 6.11e-74 249
MS.gene85129.t1 AT5G13400 31.349 571 359 12 29 582 66 620 1.59e-73 248
MS.gene85129.t1 AT2G37900 29.293 495 318 11 78 563 10 481 4.16e-72 241
MS.gene85129.t1 AT1G59740 29.350 569 366 14 11 563 23 571 6.88e-72 243
MS.gene85129.t1 AT1G72140 28.929 560 340 12 25 566 32 551 1.53e-70 238
MS.gene85129.t1 AT2G02020 29.044 544 320 9 25 566 40 519 6.46e-70 236
MS.gene85129.t1 AT1G22550 29.617 574 373 11 2 566 5 556 8.97e-70 237
MS.gene85129.t1 AT1G32450 28.147 572 388 9 37 592 47 611 2.41e-69 237
MS.gene85129.t1 AT1G22570 29.264 557 360 9 2 547 5 538 9.81e-68 231
MS.gene85129.t1 AT5G46050 30.942 446 285 8 113 549 1 432 2.18e-67 228
MS.gene85129.t1 AT1G72120 29.494 573 348 13 11 566 16 549 5.67e-67 229
MS.gene85129.t1 AT1G27040 28.832 548 358 10 29 565 29 555 1.03e-66 229
MS.gene85129.t1 AT1G27040 28.832 548 358 10 29 565 25 551 1.72e-66 228
MS.gene85129.t1 AT1G72130 28.442 552 341 10 25 566 23 530 4.12e-65 223
MS.gene85129.t1 AT1G22570 29.730 518 330 9 41 547 7 501 7.22e-65 223
MS.gene85129.t1 AT4G21680 27.304 586 383 14 3 566 6 570 3.14e-64 223
MS.gene85129.t1 AT1G27040 28.810 538 351 10 39 565 7 523 1.05e-63 219
MS.gene85129.t1 AT3G45690 28.980 559 322 15 15 566 6 496 3.77e-63 218
MS.gene85129.t1 AT5G19640 27.444 583 373 16 28 593 60 609 7.18e-59 208
MS.gene85129.t1 AT5G14940 26.270 571 367 12 25 572 5 544 3.69e-53 191
MS.gene85129.t1 AT1G69850 26.362 569 365 15 29 565 27 573 1.30e-52 191
MS.gene85129.t1 AT1G72130 28.637 433 265 9 144 566 14 412 2.73e-51 183
MS.gene85129.t1 AT1G72130 28.637 433 265 9 144 566 14 412 2.73e-51 183
MS.gene85129.t1 AT3G01350 25.784 574 376 15 25 572 5 554 1.45e-48 179
MS.gene85129.t1 AT5G62730 25.135 557 380 11 28 572 57 588 1.07e-46 174
MS.gene85129.t1 AT3G25260 26.316 532 331 15 41 565 35 512 1.63e-45 169
MS.gene85129.t1 AT5G62730 25.137 549 374 11 36 572 6 529 3.97e-45 169
MS.gene85129.t1 AT3G25280 25.577 520 334 14 52 565 46 518 2.86e-37 146
MS.gene85129.t1 AT2G38100 24.081 544 353 13 55 586 2 497 4.16e-29 122
MS.gene85129.t1 AT2G38100 24.081 544 353 13 55 586 18 513 1.01e-28 120
MS.gene85129.t1 AT2G38100 24.081 544 353 13 55 586 24 519 1.25e-28 120

Find 125 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAAAGCTCTATTGTTAT+TGG 0.116841 2.4:+3216058 None:intergenic
CTTTGTAATAAAACTCATTT+TGG 0.123205 2.4:+3215030 None:intergenic
GTCATTTCGACAAATATTTA+TGG 0.147038 2.4:-3214854 MS.gene85129:CDS
GATCATCTTGGTTGGAAAAT+TGG 0.157074 2.4:-3215960 MS.gene85129:CDS
AAATAAAGCTTGTGTTATTA+AGG 0.217505 2.4:-3215582 MS.gene85129:CDS
TTATCTTTGTAATACTTATA+TGG 0.221781 2.4:-3215322 MS.gene85129:CDS
GCTGAGGCATTCAATGTTAT+TGG 0.226194 2.4:-3215053 MS.gene85129:CDS
CAATGGAATAACTTTAATAA+TGG 0.287573 2.4:+3215475 None:intergenic
GCTTGCACCTTCACTTTGTT+TGG 0.290635 2.4:-3215084 MS.gene85129:CDS
TTTATTGCAGATTCTTATAT+TGG 0.292916 2.4:-3217190 MS.gene85129:CDS
CTTGGTTGGAAAATTGGTTT+TGG 0.297432 2.4:-3215954 MS.gene85129:CDS
TTCAAGATTAGTGAAGAAAA+TGG 0.297883 2.4:-3214597 MS.gene85129:CDS
ATTTCATGTTCTTTAGCATT+TGG 0.304538 2.4:-3216110 MS.gene85129:CDS
TTAGTATGCAGTTGGGCTTA+TGG 0.310648 2.4:-3214792 MS.gene85129:CDS
GCTGTCATAGCAGCTCTATT+TGG 0.312595 2.4:-3215999 MS.gene85129:CDS
GATAAGATACCAATGATAAA+AGG 0.324542 2.4:+3217457 None:intergenic
TGAAATGATATGTCTGTCTA+AGG 0.326067 2.4:+3215388 None:intergenic
GTTATTCCATTGTGGTCAAC+AGG 0.337103 2.4:-3215464 MS.gene85129:CDS
CAAGTAGGAGGCTGCATCGC+TGG 0.339819 2.4:+3216227 None:intergenic
AGGTTCTATTATCAGTTTCC+TGG 0.349967 2.4:-3217146 MS.gene85129:intron
GCGTTAATTCTGATAGGAAT+TGG 0.359891 2.4:-3216143 MS.gene85129:CDS
TTTGCTGATATACAGCCTTC+AGG 0.359961 2.4:+3216194 None:intergenic
GAAACACTAGACATAGTCTT+TGG 0.360014 2.4:+3215002 None:intergenic
ATTAACATCGGAGGCTCGTT+TGG 0.361174 2.4:-3215428 MS.gene85129:CDS
CAACATGATATTGTATTTGA+TGG 0.361317 2.4:-3217299 MS.gene85129:CDS
GCACCTTCACTTTGTTTGGC+TGG 0.361719 2.4:-3215080 MS.gene85129:CDS
CCTCTTATCTTTGATGCTAA+AGG 0.364995 2.4:+3215272 None:intergenic
TCATTTCGACAAATATTTAT+GGG 0.366923 2.4:-3214853 MS.gene85129:CDS
AAAAGAAGACACCAAGTTTC+CGG 0.373199 2.4:+3214950 None:intergenic
AGTGTTTCTTCAGCACTCTC+TGG 0.375458 2.4:-3214987 MS.gene85129:CDS
CTAACCTTGTCATCAATTTG+TGG 0.379224 2.4:+3214687 None:intergenic
AAGGAGAAAGAAAGCAGTTC+AGG 0.381512 2.4:-3215156 MS.gene85129:CDS
TTCCAATAACAATAGAGCTT+TGG 0.382182 2.4:-3216060 MS.gene85129:CDS
AGACCACCCTTGCTTCTTTG+TGG 0.395960 2.4:+3217490 None:intergenic
TCCAAAGTGAGTGAAGAAAA+TGG 0.396852 2.4:-3214750 MS.gene85129:CDS
CGATTCCTAGGTGTTGGAAT+AGG 0.398985 2.4:-3217166 MS.gene85129:CDS
TCTTATATTGGTCGATTCCT+AGG 0.404111 2.4:-3217178 MS.gene85129:CDS
TTCTTCAGCACTCTCTGGAT+TGG 0.405295 2.4:-3214982 MS.gene85129:CDS
CCTTTAGCATCAAAGATAAG+AGG 0.419532 2.4:-3215272 MS.gene85129:CDS
ATCAAATACAATATCATGTT+GGG 0.422265 2.4:+3217301 None:intergenic
CTTTGGAAATATTCTTCACT+TGG 0.431586 2.4:-3216043 MS.gene85129:CDS
ATCAGCAAAACCAGGTCAAA+TGG 0.449605 2.4:-3216180 MS.gene85129:CDS
CCAAGTCCCATTCTTATCTT+CGG 0.449902 2.4:+3215230 None:intergenic
TGTATTATTTAGTATGCAGT+TGG 0.452225 2.4:-3214800 MS.gene85129:CDS
CTCTCTGCGTTAATTCTGAT+AGG 0.460782 2.4:-3216149 MS.gene85129:CDS
GGCAATGGCTGCCGGAAACT+TGG 0.462855 2.4:-3214961 MS.gene85129:CDS
TGCTGCTGATGAAGAAGAAA+TGG 0.464327 2.4:-3217527 MS.gene85129:CDS
CCGAAGATAAGAATGGGACT+TGG 0.464562 2.4:-3215230 MS.gene85129:CDS
AAATATTTATGGGTTATAGC+TGG 0.467548 2.4:-3214843 MS.gene85129:CDS
ACTTCAAGTGGAGGAAAAGA+TGG 0.470588 2.4:-3214903 MS.gene85129:CDS
TAGTGAAGAAAATGGCTTGA+AGG 0.470983 2.4:-3214589 MS.gene85129:CDS
GCAATAAAAGCAGCAACAAC+AGG 0.471001 2.4:+3217205 None:intergenic
ATTCTGATAGGAATTGGAAA+TGG 0.478772 2.4:-3216137 MS.gene85129:CDS
TCTGGATTGGCAATGGCTGC+CGG 0.481828 2.4:-3214969 MS.gene85129:CDS
TTGTTCCAACTGATAGACTA+AGG 0.483967 2.4:-3215734 MS.gene85129:intron
TGAATTCAAGAATGGTGGTC+AGG 0.484071 2.4:-3214631 MS.gene85129:CDS
ATTGGTCGATTCCTAGGTGT+TGG 0.484458 2.4:-3217172 MS.gene85129:CDS
AGGATGGCAAGTGCTGGACT+TGG 0.485050 2.4:-3217325 MS.gene85129:CDS
CTTGCTAGGATGGCAAGTGC+TGG 0.493484 2.4:-3217331 MS.gene85129:CDS
AGGCTGCATCGCTGGGATCA+TGG 0.493812 2.4:+3216235 None:intergenic
TAATGAGGCACTTGCTAGGA+TGG 0.505197 2.4:-3217341 MS.gene85129:CDS
GTATTATTTAGTATGCAGTT+GGG 0.508088 2.4:-3214799 MS.gene85129:CDS
ATCAGTCCGAAGATAAGAAT+GGG 0.508597 2.4:-3215236 MS.gene85129:CDS
CTTCTCATATCCTCTGCAGC+TGG 0.510191 2.4:-3217238 MS.gene85129:CDS
AAGTTCAAACTTTGAAGTAC+CGG 0.513148 2.4:-3215366 MS.gene85129:CDS
CATCAAATACAATATCATGT+TGG 0.518744 2.4:+3217300 None:intergenic
TATCAGTCCGAAGATAAGAA+TGG 0.521040 2.4:-3215237 MS.gene85129:CDS
ATCTTCGGACTGATACTCAC+TGG 0.523009 2.4:+3215245 None:intergenic
AGCACTCTCTGGATTGGCAA+TGG 0.530645 2.4:-3214976 MS.gene85129:CDS
AACATGATATTGTATTTGAT+GGG 0.530924 2.4:-3217298 MS.gene85129:CDS
AAGTAGGAGGCTGCATCGCT+GGG 0.535790 2.4:+3216228 None:intergenic
CAAAGAACCAGCTTGCTCAC+TGG 0.541714 2.4:-3215858 MS.gene85129:CDS
CTTTAGCATCAAAGATAAGA+GGG 0.548696 2.4:-3215271 MS.gene85129:CDS
CTGATAGGAATTGGAAATGG+TGG 0.549275 2.4:-3216134 MS.gene85129:CDS
ATTGAAAACACTACTTCAAG+TGG 0.549303 2.4:-3214915 MS.gene85129:CDS
TTGTTTGGCTGGTATAGCTG+AGG 0.550780 2.4:-3215069 MS.gene85129:CDS
ATTTATTGTTGAACCATCTG+AGG 0.553024 2.4:+3215541 None:intergenic
AGAAAGAAAGCAGTTCAGGC+AGG 0.553870 2.4:-3215152 MS.gene85129:CDS
CAATCCACAAATTGATGACA+AGG 0.554131 2.4:-3214691 MS.gene85129:CDS
AGTAACATTGCCATTTGACC+TGG 0.557875 2.4:+3216170 None:intergenic
ATATAAGTATTACAAAGATA+AGG 0.558130 2.4:+3215324 None:intergenic
ATGGTTCAACAATAAATCGT+TGG 0.560017 2.4:-3215535 MS.gene85129:CDS
CAGCTAATGAGGCACTTGCT+AGG 0.560867 2.4:-3217345 MS.gene85129:CDS
GAGTAGCTGTAGCAAGATGA+AGG 0.565218 2.4:+3217266 None:intergenic
ATATCCAAGATCATCTTGGT+TGG 0.566372 2.4:-3215968 MS.gene85129:CDS
GGTGGATTGCTGCAAGTAGG+AGG 0.569731 2.4:+3216215 None:intergenic
GAGTTAACTGAATTCAAGAA+TGG 0.573785 2.4:-3214639 MS.gene85129:CDS
TCAAACTTTGAAGTACCGGC+AGG 0.576815 2.4:-3215362 MS.gene85129:CDS
TTGGATACTTGATCAGCTGT+AGG 0.577217 2.4:+3214768 None:intergenic
TGCAAAACCAGTGAGCAAGC+TGG 0.577546 2.4:+3215851 None:intergenic
GTATATATCCAAGATCATCT+TGG 0.577864 2.4:-3215972 MS.gene85129:CDS
TGAAGAAAATGGCTTGAAGG+AGG 0.581996 2.4:-3214586 MS.gene85129:CDS
CGAAGATAAGAATGGGACTT+GGG 0.582353 2.4:-3215229 MS.gene85129:CDS
GATTTCTGATAATATTAACA+AGG 0.582713 2.4:-3214877 MS.gene85129:CDS
GATATAAGCATGAGTGCTGC+TGG 0.582922 2.4:+3215927 None:intergenic
TAGTGATGAAACTAGTTCAA+AGG 0.587940 2.4:-3214667 MS.gene85129:CDS
TGTGAAATTTCCAGCTGCAG+AGG 0.589353 2.4:+3217228 None:intergenic
TTATTAAAGTTATTCCATTG+TGG 0.594692 2.4:-3215472 MS.gene85129:CDS
GAGTGAAGAAAATGGTTCCA+AGG 0.598642 2.4:-3214742 MS.gene85129:CDS
CTTCAAGTGGAGGAAAAGAT+GGG 0.602416 2.4:-3214902 MS.gene85129:CDS
GATACCAATGATAAAAGGCA+TGG 0.603181 2.4:+3217462 None:intergenic
GTATACCTTAGTCTATCAGT+TGG 0.607004 2.4:+3215729 None:intergenic
GGCTGTATATCAGCAAAACC+AGG 0.607418 2.4:-3216188 MS.gene85129:CDS
TGCTATGACAGCTATAGTTG+TGG 0.614444 2.4:+3216010 None:intergenic
GAACAAGATATAGCCTCAGA+TGG 0.621248 2.4:-3215554 MS.gene85129:CDS
GCTGATATACAGCCTTCAGG+TGG 0.623699 2.4:+3216197 None:intergenic
TTAACTGAATTCAAGAATGG+TGG 0.626429 2.4:-3214636 MS.gene85129:CDS
AGCAAGAAAGAATAAGACAG+TGG 0.634801 2.4:+3215905 None:intergenic
ATTATAGTAAAAGATCCTGC+CGG 0.635315 2.4:+3215347 None:intergenic
GAAAACACTACTTCAAGTGG+AGG 0.636406 2.4:-3214912 MS.gene85129:CDS
TTATTCCATTGTGGTCAACA+GGG 0.637429 2.4:-3215463 MS.gene85129:CDS
ACTTGCAGCAATCCACCTGA+AGG 0.637785 2.4:-3216209 MS.gene85129:CDS
ATGATGGTAAAATTCAGGTG+AGG 0.641850 2.4:+3215776 None:intergenic
GCGATCCCTGTTGACCACAA+TGG 0.645059 2.4:+3215458 None:intergenic
ATCGCAATGTCTATTAACAT+CGG 0.651661 2.4:-3215440 MS.gene85129:CDS
ATTTCTGATAATATTAACAA+GGG 0.652732 2.4:-3214876 MS.gene85129:CDS
TCAGGTGGATTGCTGCAAGT+AGG 0.653513 2.4:+3216212 None:intergenic
ATACCAGCCAAACAAAGTGA+AGG 0.655978 2.4:+3215077 None:intergenic
AAACCACAAAGAAGCAAGGG+TGG 0.667497 2.4:-3217493 MS.gene85129:CDS
GCAATGTCTATTAACATCGG+AGG 0.673604 2.4:-3215437 MS.gene85129:CDS
CAAGTGGAGGAAAAGATGGG+TGG 0.675884 2.4:-3214899 MS.gene85129:CDS
TATAGGGAATGTCAATGCTG+TGG 0.699156 2.4:-3216265 MS.gene85129:intron
TGAAGAAAATGGTTCCAAGG+AGG 0.705179 2.4:-3214739 MS.gene85129:CDS
TAGAACCTATTCCAACACCT+AGG 0.705760 2.4:+3217161 None:intergenic
TGTTGAAAATGTCTGCAATG+TGG 0.749104 2.4:-3215106 MS.gene85129:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAATTAAAGATATATT+AGG - chr2.4:3215414-3215433 MS.gene85129:CDS 10.0%
!! TTCTTTCAAAAAAAAAAAAA+AGG + chr2.4:3215326-3215345 None:intergenic 10.0%
!!! AATTAATATTCTGAAATTAT+TGG - chr2.4:3215795-3215814 MS.gene85129:CDS 10.0%
!! AATGAATATATAATATTACC+AGG + chr2.4:3215015-3215034 None:intergenic 15.0%
!! ATATAAGTATTACAAAGATA+AGG + chr2.4:3216819-3216838 None:intergenic 15.0%
!! ATATTATTAAGTCCAATTAT+GGG - chr2.4:3215097-3215116 MS.gene85129:CDS 15.0%
!! ATTTCTGATAATATTAACAA+GGG - chr2.4:3217264-3217283 MS.gene85129:CDS 15.0%
!! TATGAAAAAGAATCATATAA+AGG - chr2.4:3215739-3215758 MS.gene85129:CDS 15.0%
!! TTATCTTTGTAATACTTATA+TGG - chr2.4:3216818-3216837 MS.gene85129:intron 15.0%
!! AAACAAACAAACAAAAAAGA+AGG + chr2.4:3215846-3215865 None:intergenic 20.0%
!! AACATGATATTGTATTTGAT+GGG - chr2.4:3214842-3214861 MS.gene85129:CDS 20.0%
!! ATCAAATACAATATCATGTT+GGG + chr2.4:3214842-3214861 None:intergenic 20.0%
!! ATGAAATCAAACGTTTAATA+TGG + chr2.4:3216526-3216545 None:intergenic 20.0%
!! ATTGGTATAATGAAAAAAGT+TGG - chr2.4:3215813-3215832 MS.gene85129:CDS 20.0%
!! CAATGGAATAACTTTAATAA+TGG + chr2.4:3216668-3216687 None:intergenic 20.0%
!! CATATTATTAAGTCCAATTA+TGG - chr2.4:3215096-3215115 MS.gene85129:CDS 20.0%
!! CTCGAATATTTAATTGATAT+AGG + chr2.4:3215629-3215648 None:intergenic 20.0%
!! GATTTCTGATAATATTAACA+AGG - chr2.4:3217263-3217282 MS.gene85129:CDS 20.0%
!! TCATTTCGACAAATATTTAT+GGG - chr2.4:3217287-3217306 MS.gene85129:CDS 20.0%
!! TGAAATCAAACGTTTAATAT+GGG + chr2.4:3216525-3216544 None:intergenic 20.0%
!! TTATTAAAGTTATTCCATTG+TGG - chr2.4:3216668-3216687 MS.gene85129:intron 20.0%
!! TTTATTGCAGATTCTTATAT+TGG - chr2.4:3214950-3214969 MS.gene85129:CDS 20.0%
!!! AAAAGATAAGAAAAGTATCA+TGG + chr2.4:3215064-3215083 None:intergenic 20.0%
!!! AAATAAAGCTTGTGTTATTA+AGG - chr2.4:3216558-3216577 MS.gene85129:intron 20.0%
!!! AATTTTCGTTTCTTTTAACT+TGG + chr2.4:3216062-3216081 None:intergenic 20.0%
!!! CTTTATTTTTACTTTGAATG+AGG - chr2.4:3214732-3214751 MS.gene85129:CDS 20.0%
!!! CTTTGTAATAAAACTCATTT+TGG + chr2.4:3217113-3217132 None:intergenic 20.0%
!!! GTTTTTTAATTTTCTTCACT+TGG - chr2.4:3216936-3216955 MS.gene85129:intron 20.0%
!!! TAATTTTAAAAAGGAATCTG+AGG + chr2.4:3215694-3215713 None:intergenic 20.0%
!!! TGAAAGTTTTCTGTTTTTAT+AGG + chr2.4:3216331-3216350 None:intergenic 20.0%
!!! TGTTATTTGAACAAAAATTC+AGG - chr2.4:3216482-3216501 MS.gene85129:intron 20.0%
!!! TTTGTTTGTTTGTTGTTATA+GGG - chr2.4:3215859-3215878 MS.gene85129:CDS 20.0%
!!! TTTTTATGATGGTAAAATTC+AGG + chr2.4:3216372-3216391 None:intergenic 20.0%
! ATACAATTTACTCCCATAAT+TGG + chr2.4:3215112-3215131 None:intergenic 25.0%
! ATATGCAAAAGCTATAAAGA+TGG + chr2.4:3216436-3216455 None:intergenic 25.0%
! ATTTCATGTTCTTTAGCATT+TGG - chr2.4:3216030-3216049 MS.gene85129:CDS 25.0%
! CAACATGATATTGTATTTGA+TGG - chr2.4:3214841-3214860 MS.gene85129:CDS 25.0%
! CATCAAATACAATATCATGT+TGG + chr2.4:3214843-3214862 None:intergenic 25.0%
! GATAAGATACCAATGATAAA+AGG + chr2.4:3214686-3214705 None:intergenic 25.0%
! GTATCATGGAATGAAAAAAA+AGG + chr2.4:3215050-3215069 None:intergenic 25.0%
! GTATTATTTAGTATGCAGTT+GGG - chr2.4:3217341-3217360 MS.gene85129:CDS 25.0%
! GTCATTTCGACAAATATTTA+TGG - chr2.4:3217286-3217305 MS.gene85129:CDS 25.0%
! TCAAAATGTGACAATTCAAA+AGG + chr2.4:3215191-3215210 None:intergenic 25.0%
! TGCAAAAGTGACAATTATAA+AGG - chr2.4:3215230-3215249 MS.gene85129:CDS 25.0%
! TGTATTATTTAGTATGCAGT+TGG - chr2.4:3217340-3217359 MS.gene85129:CDS 25.0%
! TTCAAGATTAGTGAAGAAAA+TGG - chr2.4:3217543-3217562 MS.gene85129:CDS 25.0%
!! AAATATTTATGGGTTATAGC+TGG - chr2.4:3217297-3217316 MS.gene85129:CDS 25.0%
!! GGATTTTTGAATAATACTCA+TGG - chr2.4:3217009-3217028 MS.gene85129:intron 25.0%
!! TGTGTAATTTTCACATAAAG+AGG + chr2.4:3216264-3216283 None:intergenic 25.0%
!!! AAACGTTTGATTTCATTTTC+AGG - chr2.4:3216530-3216549 MS.gene85129:intron 25.0%
!!! GTTTGTTTGTTTGTTGTTAT+AGG - chr2.4:3215858-3215877 MS.gene85129:CDS 25.0%
AATCAATATGTTGTAGATCC+AGG + chr2.4:3215363-3215382 None:intergenic 30.0%
AGAAAGAATCACAAATCAAG+GGG + chr2.4:3215525-3215544 None:intergenic 30.0%
ATCGCAATGTCTATTAACAT+CGG - chr2.4:3216700-3216719 MS.gene85129:intron 30.0%
ATGGTTCAACAATAAATCGT+TGG - chr2.4:3216605-3216624 MS.gene85129:intron 30.0%
ATTATAGTAAAAGATCCTGC+CGG + chr2.4:3216796-3216815 None:intergenic 30.0%
ATTCTGATAGGAATTGGAAA+TGG - chr2.4:3216003-3216022 MS.gene85129:CDS 30.0%
ATTGAAAACACTACTTCAAG+TGG - chr2.4:3217225-3217244 MS.gene85129:CDS 30.0%
ATTTATTGTTGAACCATCTG+AGG + chr2.4:3216602-3216621 None:intergenic 30.0%
CTTTAGCATCAAAGATAAGA+GGG - chr2.4:3216869-3216888 MS.gene85129:intron 30.0%
GAACACTTGAATTGAATCTA+TGG - chr2.4:3215436-3215455 MS.gene85129:CDS 30.0%
GACAATTATAAAGGAACTGA+GGG - chr2.4:3215239-3215258 MS.gene85129:CDS 30.0%
GAGAAAGAATCACAAATCAA+GGG + chr2.4:3215526-3215545 None:intergenic 30.0%
GAGTTAACTGAATTCAAGAA+TGG - chr2.4:3217501-3217520 MS.gene85129:CDS 30.0%
GTATATATCCAAGATCATCT+TGG - chr2.4:3216168-3216187 MS.gene85129:CDS 30.0%
TAATCATACTTCAATGCAGA+AGG - chr2.4:3215271-3215290 MS.gene85129:CDS 30.0%
TAGTGATGAAACTAGTTCAA+AGG - chr2.4:3217473-3217492 MS.gene85129:CDS 30.0%
TGAAATGATATGTCTGTCTA+AGG + chr2.4:3216755-3216774 None:intergenic 30.0%
TGACAATTATAAAGGAACTG+AGG - chr2.4:3215238-3215257 MS.gene85129:CDS 30.0%
TGAGAAAGAATCACAAATCA+AGG + chr2.4:3215527-3215546 None:intergenic 30.0%
TTAACTGAATTCAAGAATGG+TGG - chr2.4:3217504-3217523 MS.gene85129:CDS 30.0%
TTCCAAAGCTCTATTGTTAT+TGG + chr2.4:3216085-3216104 None:intergenic 30.0%
TTCCAATAACAATAGAGCTT+TGG - chr2.4:3216080-3216099 MS.gene85129:CDS 30.0%
TTGAATATACGTACCAAGTT+TGG + chr2.4:3215777-3215796 None:intergenic 30.0%
TTTGTGATTCTTTCTCAACT+AGG - chr2.4:3215530-3215549 MS.gene85129:CDS 30.0%
! AGAAGCATATATGTATAACC+TGG - chr2.4:3215342-3215361 MS.gene85129:CDS 30.0%
! ATCTGAAACATAAAGAGAGA+CGG - chr2.4:3215481-3215500 MS.gene85129:CDS 30.0%
! CTTTGGAAATATTCTTCACT+TGG - chr2.4:3216097-3216116 MS.gene85129:CDS 30.0%
!! AAGTTCAAACTTTGAAGTAC+CGG - chr2.4:3216774-3216793 MS.gene85129:intron 30.0%
!! CAGCAATTTTTGAGAGTATA+AGG - chr2.4:3216965-3216984 MS.gene85129:intron 30.0%
!!! GATCTGAGTCTTTTTTATGA+TGG + chr2.4:3216383-3216402 None:intergenic 30.0%
AAAAGAAGACACCAAGTTTC+CGG + chr2.4:3217193-3217212 None:intergenic 35.0%
AATATACGTACCAAGTTTGG+TGG + chr2.4:3215774-3215793 None:intergenic 35.0%
AATCTATGGCTAAAGTCTGT+GGG - chr2.4:3215450-3215469 MS.gene85129:CDS 35.0%
ACAAAAACCACAAAGAAGCA+AGG - chr2.4:3214643-3214662 MS.gene85129:CDS 35.0%
AGCAAGAAAGAATAAGACAG+TGG + chr2.4:3216238-3216257 None:intergenic 35.0%
AGGTTCTATTATCAGTTTCC+TGG - chr2.4:3214994-3215013 MS.gene85129:CDS 35.0%
ATATCCAAGATCATCTTGGT+TGG - chr2.4:3216172-3216191 MS.gene85129:CDS 35.0%
ATCAGTCCGAAGATAAGAAT+GGG - chr2.4:3216904-3216923 MS.gene85129:intron 35.0%
ATGATGGTAAAATTCAGGTG+AGG + chr2.4:3216367-3216386 None:intergenic 35.0%
ATTGTCTTGCCTAAGACATA+TGG + chr2.4:3215559-3215578 None:intergenic 35.0%
CAAAAACCACAAAGAAGCAA+GGG - chr2.4:3214644-3214663 MS.gene85129:CDS 35.0%
CCTCTTATCTTTGATGCTAA+AGG + chr2.4:3216871-3216890 None:intergenic 35.0%
CCTTTAGCATCAAAGATAAG+AGG - chr2.4:3216868-3216887 MS.gene85129:intron 35.0%
CTAACCTTGTCATCAATTTG+TGG + chr2.4:3217456-3217475 None:intergenic 35.0%
GAAAAAAGTTCCACCAAACT+TGG - chr2.4:3215761-3215780 MS.gene85129:CDS 35.0%
GAAACACTAGACATAGTCTT+TGG + chr2.4:3217141-3217160 None:intergenic 35.0%
GACAATTCAAAAGGAAGAGA+GGG + chr2.4:3215182-3215201 None:intergenic 35.0%
GATACCAATGATAAAAGGCA+TGG + chr2.4:3214681-3214700 None:intergenic 35.0%
GATCATCTTGGTTGGAAAAT+TGG - chr2.4:3216180-3216199 MS.gene85129:CDS 35.0%
GCGTTAATTCTGATAGGAAT+TGG - chr2.4:3215997-3216016 MS.gene85129:CDS 35.0%
GTATACCTTAGTCTATCAGT+TGG + chr2.4:3216414-3216433 None:intergenic 35.0%
TAGTGAAGAAAATGGCTTGA+AGG - chr2.4:3217551-3217570 MS.gene85129:CDS 35.0%
TATCAGTCCGAAGATAAGAA+TGG - chr2.4:3216903-3216922 MS.gene85129:intron 35.0%
TCCAAAGTGAGTGAAGAAAA+TGG - chr2.4:3217390-3217409 MS.gene85129:intron 35.0%
TGACAATTCAAAAGGAAGAG+AGG + chr2.4:3215183-3215202 None:intergenic 35.0%
TGTTGAAAATGTCTGCAATG+TGG - chr2.4:3217034-3217053 MS.gene85129:intron 35.0%
TTATTCCATTGTGGTCAACA+GGG - chr2.4:3216677-3216696 MS.gene85129:intron 35.0%
TTGTTCCAACTGATAGACTA+AGG - chr2.4:3216406-3216425 MS.gene85129:intron 35.0%
! ACCATTTTCTTCACTCACTT+TGG + chr2.4:3217394-3217413 None:intergenic 35.0%
! CAATCCACAAATTGATGACA+AGG - chr2.4:3217449-3217468 MS.gene85129:intron 35.0%
! TCTTATATTGGTCGATTCCT+AGG - chr2.4:3214962-3214981 MS.gene85129:CDS 35.0%
! TTCAGTTGAATTTTCCTCCT+TGG + chr2.4:3217418-3217437 None:intergenic 35.0%
! TTTTCCAACCAAGATGATCT+TGG + chr2.4:3216179-3216198 None:intergenic 35.0%
!! CTTGGTTGGAAAATTGGTTT+TGG - chr2.4:3216186-3216205 MS.gene85129:CDS 35.0%
!!! TTTTGTTGTTGCAGCTAATG+AGG - chr2.4:3214784-3214803 MS.gene85129:CDS 35.0%
AAGGAGAAAGAAAGCAGTTC+AGG - chr2.4:3216984-3217003 MS.gene85129:intron 40.0%
ACTAGGACTCCATATGTCTT+AGG - chr2.4:3215547-3215566 MS.gene85129:CDS 40.0%
ACTTCAAGTGGAGGAAAAGA+TGG - chr2.4:3217237-3217256 MS.gene85129:CDS 40.0%
ATACCAGCCAAACAAAGTGA+AGG + chr2.4:3217066-3217085 None:intergenic 40.0%
ATCAGCAAAACCAGGTCAAA+TGG - chr2.4:3215960-3215979 MS.gene85129:CDS 40.0%
CCAAGTCCCATTCTTATCTT+CGG + chr2.4:3216913-3216932 None:intergenic 40.0%
CGAAGATAAGAATGGGACTT+GGG - chr2.4:3216911-3216930 MS.gene85129:intron 40.0%
CTCTCTGCGTTAATTCTGAT+AGG - chr2.4:3215991-3216010 MS.gene85129:CDS 40.0%
CTGATAGGAATTGGAAATGG+TGG - chr2.4:3216006-3216025 MS.gene85129:CDS 40.0%
CTTCAAGTGGAGGAAAAGAT+GGG - chr2.4:3217238-3217257 MS.gene85129:CDS 40.0%
GAAAACACTACTTCAAGTGG+AGG - chr2.4:3217228-3217247 MS.gene85129:CDS 40.0%
GAACAAGATATAGCCTCAGA+TGG - chr2.4:3216586-3216605 MS.gene85129:intron 40.0%
GAATCTATGGCTAAAGTCTG+TGG - chr2.4:3215449-3215468 MS.gene85129:CDS 40.0%
GAGTGAAGAAAATGGTTCCA+AGG - chr2.4:3217398-3217417 MS.gene85129:intron 40.0%
GCAATAAAAGCAGCAACAAC+AGG + chr2.4:3214938-3214957 None:intergenic 40.0%
GCAATGTCTATTAACATCGG+AGG - chr2.4:3216703-3216722 MS.gene85129:intron 40.0%
GTTATTCCATTGTGGTCAAC+AGG - chr2.4:3216676-3216695 MS.gene85129:intron 40.0%
TAGAACCTATTCCAACACCT+AGG + chr2.4:3214982-3215001 None:intergenic 40.0%
TATAGGGAATGTCAATGCTG+TGG - chr2.4:3215875-3215894 MS.gene85129:CDS 40.0%
TGAAGAAAATGGCTTGAAGG+AGG - chr2.4:3217554-3217573 MS.gene85129:CDS 40.0%
TGAAGAAAATGGTTCCAAGG+AGG - chr2.4:3217401-3217420 MS.gene85129:intron 40.0%
TGAATTCAAGAATGGTGGTC+AGG - chr2.4:3217509-3217528 MS.gene85129:CDS 40.0%
TGCTATGACAGCTATAGTTG+TGG + chr2.4:3216133-3216152 None:intergenic 40.0%
TGCTGCTGATGAAGAAGAAA+TGG - chr2.4:3214613-3214632 MS.gene85129:CDS 40.0%
TTAGTATGCAGTTGGGCTTA+TGG - chr2.4:3217348-3217367 MS.gene85129:intron 40.0%
TTGGATACTTGATCAGCTGT+AGG + chr2.4:3217375-3217394 None:intergenic 40.0%
TTTGCTGATATACAGCCTTC+AGG + chr2.4:3215949-3215968 None:intergenic 40.0%
! AATTCAGGTGAGGTTTTCGA+TGG + chr2.4:3216357-3216376 None:intergenic 40.0%
! AGTAACATTGCCATTTGACC+TGG + chr2.4:3215973-3215992 None:intergenic 40.0%
! GCTGAGGCATTCAATGTTAT+TGG - chr2.4:3217087-3217106 MS.gene85129:intron 40.0%
! GTCACCATGCCTTTTATCAT+TGG - chr2.4:3214674-3214693 MS.gene85129:CDS 40.0%
AAACCACAAAGAAGCAAGGG+TGG - chr2.4:3214647-3214666 MS.gene85129:CDS 45.0%
AGAAAGAAAGCAGTTCAGGC+AGG - chr2.4:3216988-3217007 MS.gene85129:intron 45.0%
AGTGTTTCTTCAGCACTCTC+TGG - chr2.4:3217153-3217172 MS.gene85129:CDS 45.0%
ATCTTCGGACTGATACTCAC+TGG + chr2.4:3216898-3216917 None:intergenic 45.0%
ATTAACATCGGAGGCTCGTT+TGG - chr2.4:3216712-3216731 MS.gene85129:intron 45.0%
CCGAAGATAAGAATGGGACT+TGG - chr2.4:3216910-3216929 MS.gene85129:intron 45.0%
GAGTAGCTGTAGCAAGATGA+AGG + chr2.4:3214877-3214896 None:intergenic 45.0%
GCTGTCATAGCAGCTCTATT+TGG - chr2.4:3216141-3216160 MS.gene85129:CDS 45.0%
GCTTGCACCTTCACTTTGTT+TGG - chr2.4:3217056-3217075 MS.gene85129:intron 45.0%
GGCTGTATATCAGCAAAACC+AGG - chr2.4:3215952-3215971 MS.gene85129:CDS 45.0%
TGTGAAATTTCCAGCTGCAG+AGG + chr2.4:3214915-3214934 None:intergenic 45.0%
TTCTTCAGCACTCTCTGGAT+TGG - chr2.4:3217158-3217177 MS.gene85129:CDS 45.0%
TTGTTTGGCTGGTATAGCTG+AGG - chr2.4:3217071-3217090 MS.gene85129:intron 45.0%
! ATTGGTCGATTCCTAGGTGT+TGG - chr2.4:3214968-3214987 MS.gene85129:CDS 45.0%
! GATATAAGCATGAGTGCTGC+TGG + chr2.4:3216216-3216235 None:intergenic 45.0%
! TAATGAGGCACTTGCTAGGA+TGG - chr2.4:3214799-3214818 MS.gene85129:CDS 45.0%
!! CGATTCCTAGGTGTTGGAAT+AGG - chr2.4:3214974-3214993 MS.gene85129:CDS 45.0%
!! TCAAACTTTGAAGTACCGGC+AGG - chr2.4:3216778-3216797 MS.gene85129:intron 45.0%
!!! ATCATTTTTTAATTTTAAAA+AGG + chr2.4:3215703-3215722 None:intergenic 5.0%
!!! TAATATTATATATTCATTTT+TGG - chr2.4:3215017-3215036 MS.gene85129:CDS 5.0%
ACTTGCAGCAATCCACCTGA+AGG - chr2.4:3215931-3215950 MS.gene85129:CDS 50.0%
AGACCACCCTTGCTTCTTTG+TGG + chr2.4:3214653-3214672 None:intergenic 50.0%
CAAGTGGAGGAAAAGATGGG+TGG - chr2.4:3217241-3217260 MS.gene85129:CDS 50.0%
CTTCTCATATCCTCTGCAGC+TGG - chr2.4:3214902-3214921 MS.gene85129:CDS 50.0%
GCTGATATACAGCCTTCAGG+TGG + chr2.4:3215946-3215965 None:intergenic 50.0%
TGCAAAACCAGTGAGCAAGC+TGG + chr2.4:3216292-3216311 None:intergenic 50.0%
! CAAAGAACCAGCTTGCTCAC+TGG - chr2.4:3216282-3216301 MS.gene85129:intron 50.0%
! CAGCTAATGAGGCACTTGCT+AGG - chr2.4:3214795-3214814 MS.gene85129:CDS 50.0%
! GCACCTTCACTTTGTTTGGC+TGG - chr2.4:3217060-3217079 MS.gene85129:intron 50.0%
!! AGCACTCTCTGGATTGGCAA+TGG - chr2.4:3217164-3217183 MS.gene85129:CDS 50.0%
!! TCAGGTGGATTGCTGCAAGT+AGG + chr2.4:3215931-3215950 None:intergenic 50.0%
AAGTAGGAGGCTGCATCGCT+GGG + chr2.4:3215915-3215934 None:intergenic 55.0%
CTTGCTAGGATGGCAAGTGC+TGG - chr2.4:3214809-3214828 MS.gene85129:CDS 55.0%
GCGATCCCTGTTGACCACAA+TGG + chr2.4:3216685-3216704 None:intergenic 55.0%
!! AGGATGGCAAGTGCTGGACT+TGG - chr2.4:3214815-3214834 MS.gene85129:CDS 55.0%
!! GGTGGATTGCTGCAAGTAGG+AGG + chr2.4:3215928-3215947 None:intergenic 55.0%
!! TCTGGATTGGCAATGGCTGC+CGG - chr2.4:3217171-3217190 MS.gene85129:CDS 55.0%
AGGCTGCATCGCTGGGATCA+TGG + chr2.4:3215908-3215927 None:intergenic 60.0%
CAAGTAGGAGGCTGCATCGC+TGG + chr2.4:3215916-3215935 None:intergenic 60.0%
GGCAATGGCTGCCGGAAACT+TGG - chr2.4:3217179-3217198 MS.gene85129:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 3214581 3217581 3214581 ID=MS.gene85129
chr2.4 mRNA 3214581 3217581 3214581 ID=MS.gene85129.t1;Parent=MS.gene85129
chr2.4 exon 3217467 3217581 3217467 ID=MS.gene85129.t1.exon1;Parent=MS.gene85129.t1
chr2.4 CDS 3217467 3217581 3217467 ID=cds.MS.gene85129.t1;Parent=MS.gene85129.t1
chr2.4 exon 3217147 3217364 3217147 ID=MS.gene85129.t1.exon2;Parent=MS.gene85129.t1
chr2.4 CDS 3217147 3217364 3217147 ID=cds.MS.gene85129.t1;Parent=MS.gene85129.t1
chr2.4 exon 3215735 3216282 3215735 ID=MS.gene85129.t1.exon3;Parent=MS.gene85129.t1
chr2.4 CDS 3215735 3216282 3215735 ID=cds.MS.gene85129.t1;Parent=MS.gene85129.t1
chr2.4 exon 3214581 3215610 3214581 ID=MS.gene85129.t1.exon4;Parent=MS.gene85129.t1
chr2.4 CDS 3214581 3215610 3214581 ID=cds.MS.gene85129.t1;Parent=MS.gene85129.t1
Gene Sequence

>MS.gene85129

ATGGATAAGGAACTTCAACTTTGTTCAGTTGATGCTGCTGATGAAGAAGAAATGGTTTCTCAACAAAAACCACAAAGAAGCAAGGGTGGTCTTGTCACCATGCCTTTTATCATTGGTATCTTATCTATAACTTGCATGCATTTTTATTTTACTTTATTTTTACTTTGAATGAGGTTGAATTTTGATGTATAATATTAATATGATTTTGTTGTTGCAGCTAATGAGGCACTTGCTAGGATGGCAAGTGCTGGACTTGGACCCAACATGATATTGTATTTGATGGGATCTTACAACCTTCATCTTGCTACAGCTACTCAGATACTTCTCATATCCTCTGCAGCTGGAAATTTCACACCTGTTGTTGCTGCTTTTATTGCAGATTCTTATATTGGTCGATTCCTAGGTGTTGGAATAGGTTCTATTATCAGTTTCCTGGTAATATTATATATTCATTTTTGGTTTACTTCCTTTTTTTTCATTCCATGATACTTTTCTTATCTTTTGACTTGAATATGCATATTATTAAGTCCAATTATGGGAGTAAATTGTATTTGAATTAATCACATACATAGAAGACATGCTCAATATAAATATTACACCCTCTCTTCCTTTTGAATTGTCACATTTTGACTTAGAAACAAAAAATTTATGCAAAAGTGACAATTATAAAGGAACTGAGGGAGTACACTTTAATCATACTTCAATGCAGAAGGAAAATAAAAAGATAAGCATATATGTATAACCTTTTTTTTTTTTTTGAAAGAAGCATATATGTATAACCTGGATCTACAACATATTGATTTTTTTGTAATCAACAACAACATACAACATATTGATTAATTAAAGATATATTAGGAACACTTGAATTGAATCTATGGCTAAAGTCTGTGGGCGACAATGATCTGAAACATAAAGAGAGACGGATAATGTCATAACGAATGCCCCTTGATTTGTGATTCTTTCTCAACTAGGACTCCATATGTCTTAGGCAAGACAATACGCAGTGTGTCTGATATATTGAAGATCATTGTCTACATATAGTGAACCTATATCAATTAAATATTCGAGTAGTTAAATAAAATATTCAACTATGATATTCTGATTAATTCTCCTCAGATTCCTTTTTAAAATTAAAAAATGATATATTCACTTGTATTGTATGAAAAAGAATCATATAAAGGAAAAAAGTTCCACCAAACTTGGTACGTATATTCAATTAATATTCTGAAATTATTGGTATAATGAAAAAAGTTGGTAACGATCCTTCTTTTTTGTTTGTTTGTTTGTTTGTTGTTATAGGGAATGTCAATGCTGTGGTTAACAGCCATGATCCCAGCGATGCAGCCTCCTACTTGCAGCAATCCACCTGAAGGCTGTATATCAGCAAAACCAGGTCAAATGGCAATGTTACTCTCTGCGTTAATTCTGATAGGAATTGGAAATGGTGGTATTTCATGTTCTTTAGCATTTGGTGCAGACCAAGTTAAAAGAAACGAAAATTCCAATAACAATAGAGCTTTGGAAATATTCTTCACTTGGTATTATGCTTCCACAACTATAGCTGTCATAGCAGCTCTATTTGGAATAGTATATATCCAAGATCATCTTGGTTGGAAAATTGGTTTTGGTGTACCAGCAGCACTCATGCTTATATCCACTGTCTTATTCTTTCTTGCTTCTCCTCTTTATGTGAAAATTACACAAAGAACCAGCTTGCTCACTGGTTTTGCACAAGTATCTGTTGCTGCCTATAAAAACAGAAAACTTTCATTGCCATCGAAAACCTCACCTGAATTTTACCATCATAAAAAAGACTCAGATCTTCTTGTTCCAACTGATAGACTAAGGTATACCATCTTTATAGCTTTTGCATATTTTATACATACAGATTAAATCAGTTGTGTTATTTGAACAAAAATTCAGGTCGTACAAAAATCATTTCCCATATTAAACGTTTGATTTCATTTTCAGGTTTCTAAATAAAGCTTGTGTTATTAAGGATCACGAACAAGATATAGCCTCAGATGGTTCAACAATAAATCGTTGGAGTCTCTGCACAGTAGATCAAGTTGAAGAACTAAAAGCCATTATTAAAGTTATTCCATTGTGGTCAACAGGGATCGCAATGTCTATTAACATCGGAGGCTCGTTTGGATTGCTGCAAGCTAAATCCTTAGACAGACATATCATTTCAAGTTCAAACTTTGAAGTACCGGCAGGATCTTTTACTATAATCCTTATCTTTGTAATACTTATATGGATAGTTATCTATGATCGTGTTCTTATTCCTTTAGCATCAAAGATAAGAGGGAAACCAGTGAGTATCAGTCCGAAGATAAGAATGGGACTTGGGTTGTTTTTTAATTTTCTTCACTTGGTAGTTGCAGCAATTTTTGAGAGTATAAGGAGAAAGAAAGCAGTTCAGGCAGGATTTTTGAATAATACTCATGGAGTGTTGAAAATGTCTGCAATGTGGCTTGCACCTTCACTTTGTTTGGCTGGTATAGCTGAGGCATTCAATGTTATTGGCCAAAATGAGTTTTATTACAAAGAGTTTCCAAAGACTATGTCTAGTGTTTCTTCAGCACTCTCTGGATTGGCAATGGCTGCCGGAAACTTGGTGTCTTCTTTTGTATTCAGCACTATTGAAAACACTACTTCAAGTGGAGGAAAAGATGGGTGGATTTCTGATAATATTAACAAGGGTCATTTCGACAAATATTTATGGGTTATAGCTGGAATTAATGTTCTTAATCTACTGTATTATTTAGTATGCAGTTGGGCTTATGGACCTACAGCTGATCAAGTATCCAAAGTGAGTGAAGAAAATGGTTCCAAGGAGGAAAATTCAACTGAATTCAAAAATGTCAATCCACAAATTGATGACAAGGTTAGTGATGAAACTAGTTCAAAGGAGAAAGAGTTAACTGAATTCAAGAATGGTGGTCAGGTTGAGAAAGTATTCAAGATTAGTGAAGAAAATGGCTTGAAGGAGGAATAG

Protein sequence

>MS.gene85129.t1

MDKELQLCSVDAADEEEMVSQQKPQRSKGGLVTMPFIIANEALARMASAGLGPNMILYLMGSYNLHLATATQILLISSAAGNFTPVVAAFIADSYIGRFLGVGIGSIISFLGMSMLWLTAMIPAMQPPTCSNPPEGCISAKPGQMAMLLSALILIGIGNGGISCSLAFGADQVKRNENSNNNRALEIFFTWYYASTTIAVIAALFGIVYIQDHLGWKIGFGVPAALMLISTVLFFLASPLYVKITQRTSLLTGFAQVSVAAYKNRKLSLPSKTSPEFYHHKKDSDLLVPTDRLRFLNKACVIKDHEQDIASDGSTINRWSLCTVDQVEELKAIIKVIPLWSTGIAMSINIGGSFGLLQAKSLDRHIISSSNFEVPAGSFTIILIFVILIWIVIYDRVLIPLASKIRGKPVSISPKIRMGLGLFFNFLHLVVAAIFESIRRKKAVQAGFLNNTHGVLKMSAMWLAPSLCLAGIAEAFNVIGQNEFYYKEFPKTMSSVSSALSGLAMAAGNLVSSFVFSTIENTTSSGGKDGWISDNINKGHFDKYLWVIAGINVLNLLYYLVCSWAYGPTADQVSKVSEENGSKEENSTEFKNVNPQIDDKVSDETSSKEKELTEFKNGGQVEKVFKISEENGLKEE