AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09962


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09962.t1 MTR_5g012270 96.741 583 17 1 1 581 1 583 0.0 1163
MS.gene09962.t1 MTR_5g012290 76.248 581 136 2 1 580 1 580 0.0 909
MS.gene09962.t1 MTR_4g101380 70.840 583 167 2 1 580 1 583 0.0 835
MS.gene09962.t1 MTR_4g114340 52.014 571 248 7 12 573 9 562 0.0 540
MS.gene09962.t1 MTR_5g085850 48.393 560 264 6 15 570 18 556 1.92e-177 514
MS.gene09962.t1 MTR_4g015080 43.525 556 304 6 17 570 24 571 1.41e-155 458
MS.gene09962.t1 MTR_7g067010 42.933 566 309 8 7 570 8 561 3.66e-153 452
MS.gene09962.t1 MTR_5g055000 41.652 557 318 5 25 578 16 568 1.13e-150 446
MS.gene09962.t1 MTR_3g462710 43.907 558 301 8 17 570 14 563 2.62e-150 444
MS.gene09962.t1 MTR_7g098200 41.637 562 309 6 17 571 19 568 1.85e-147 438
MS.gene09962.t1 MTR_7g098200 41.637 562 299 8 17 571 19 558 1.89e-143 427
MS.gene09962.t1 MTR_3g112460 39.719 569 321 7 17 581 13 563 2.38e-143 427
MS.gene09962.t1 MTR_7g088825 38.830 564 333 4 23 580 18 575 5.95e-143 427
MS.gene09962.t1 MTR_3g112470 39.192 569 324 8 17 581 13 563 9.91e-139 415
MS.gene09962.t1 MTR_7g098040 39.825 570 322 7 7 570 18 572 1.61e-138 416
MS.gene09962.t1 MTR_7g098160 40.070 569 322 6 7 570 17 571 1.43e-137 413
MS.gene09962.t1 MTR_7g098230 39.411 543 314 5 34 571 33 565 2.24e-135 407
MS.gene09962.t1 MTR_1g041835 40.105 571 322 7 17 577 17 577 6.47e-135 405
MS.gene09962.t1 MTR_1g075440 38.220 573 335 6 8 570 3 566 1.24e-134 405
MS.gene09962.t1 MTR_7g098180 37.973 582 345 5 5 580 9 580 3.18e-134 404
MS.gene09962.t1 MTR_3g112450 39.130 575 324 10 14 581 10 565 3.42e-134 403
MS.gene09962.t1 MTR_7g088790 39.146 562 329 5 27 581 29 584 7.92e-134 404
MS.gene09962.t1 MTR_7g098090 39.896 579 314 8 7 570 17 576 2.06e-133 402
MS.gene09962.t1 MTR_7g098220 39.138 580 334 6 7 581 14 579 2.71e-133 402
MS.gene09962.t1 MTR_4g019580 37.611 561 332 8 15 571 24 570 7.22e-131 395
MS.gene09962.t1 MTR_1g041815 38.803 585 334 8 7 581 11 581 2.41e-130 394
MS.gene09962.t1 MTR_7g010820 40.248 564 317 8 17 569 16 570 6.63e-130 393
MS.gene09962.t1 MTR_7g065080 38.011 563 326 8 17 575 21 564 4.78e-129 390
MS.gene09962.t1 MTR_5g014150 37.479 587 352 9 2 581 19 597 1.41e-128 390
MS.gene09962.t1 MTR_4g098800 38.732 568 330 9 7 567 16 572 5.93e-128 388
MS.gene09962.t1 MTR_2g005130 38.103 580 327 11 6 578 19 573 8.19e-128 387
MS.gene09962.t1 MTR_5g038060 38.407 565 327 7 25 577 29 584 1.36e-127 387
MS.gene09962.t1 MTR_3g069500 39.415 581 318 12 6 577 13 568 1.59e-127 386
MS.gene09962.t1 MTR_4g098800 38.732 568 330 9 7 567 81 637 3.68e-127 388
MS.gene09962.t1 MTR_1g042310 36.126 573 349 7 2 570 5 564 4.83e-125 380
MS.gene09962.t1 MTR_7g088820 34.859 568 363 5 17 581 17 580 8.22e-125 380
MS.gene09962.t1 MTR_3g069420 36.602 571 343 11 6 570 12 569 1.61e-124 379
MS.gene09962.t1 MTR_7g098220 38.716 545 319 5 42 581 1 535 2.59e-124 377
MS.gene09962.t1 MTR_7g005930 38.061 557 320 10 19 567 27 566 2.82e-124 378
MS.gene09962.t1 MTR_3g072300 37.925 559 335 8 17 572 14 563 1.24e-123 377
MS.gene09962.t1 MTR_7g013270 37.258 569 332 10 8 567 71 623 3.62e-123 377
MS.gene09962.t1 MTR_3g069440 38.908 568 326 9 17 577 23 576 3.92e-123 375
MS.gene09962.t1 MTR_4g033325 37.349 581 331 7 2 578 6 557 7.63e-123 374
MS.gene09962.t1 MTR_3g462710 45.414 447 233 7 128 570 15 454 4.36e-122 368
MS.gene09962.t1 MTR_1g041875 36.201 558 336 6 17 570 19 560 5.87e-122 372
MS.gene09962.t1 MTR_0294s0020 37.279 566 322 8 17 578 21 557 5.23e-121 369
MS.gene09962.t1 MTR_3g100980 36.926 566 331 9 22 577 11 560 7.26e-121 369
MS.gene09962.t1 MTR_4g033315 36.661 581 337 6 2 578 6 559 1.13e-120 368
MS.gene09962.t1 MTR_4g033310 36.661 581 337 6 2 578 6 559 1.13e-120 368
MS.gene09962.t1 MTR_8g087810 37.585 588 348 10 8 580 2 585 1.01e-119 366
MS.gene09962.t1 MTR_1g116930 37.168 565 330 9 23 581 19 564 2.75e-119 365
MS.gene09962.t1 MTR_4g107670 37.108 574 327 9 17 571 14 572 9.37e-119 363
MS.gene09962.t1 MTR_2g017750 36.897 580 349 10 17 581 24 601 2.88e-118 363
MS.gene09962.t1 MTR_8g087780 37.201 586 352 9 8 580 2 584 9.80e-118 361
MS.gene09962.t1 MTR_8g038880 38.095 567 316 7 26 579 19 563 1.28e-117 360
MS.gene09962.t1 MTR_3g005010 37.011 562 308 8 17 570 20 543 1.87e-116 357
MS.gene09962.t1 MTR_8g469310 38.287 572 319 8 17 570 16 571 3.03e-116 357
MS.gene09962.t1 MTR_8g469480 36.347 553 331 7 30 570 41 584 4.65e-116 357
MS.gene09962.t1 MTR_1g042310 35.649 547 334 7 44 581 6 543 4.71e-116 356
MS.gene09962.t1 MTR_4g107530 35.957 559 333 10 30 573 36 584 7.60e-116 357
MS.gene09962.t1 MTR_7g088820 35.078 516 330 4 69 581 5 518 1.34e-115 354
MS.gene09962.t1 MTR_7g098200 40.733 464 256 6 115 571 3 454 2.86e-115 352
MS.gene09962.t1 MTR_7g065080 38.462 494 281 8 86 575 3 477 3.90e-115 352
MS.gene09962.t1 MTR_3g100980 35.126 595 332 10 22 578 11 589 9.98e-115 354
MS.gene09962.t1 MTR_1g042310 35.675 541 330 7 50 581 5 536 1.15e-114 352
MS.gene09962.t1 MTR_1g041885 36.614 508 302 6 50 553 5 496 1.98e-113 348
MS.gene09962.t1 MTR_5g038380 36.458 576 339 7 17 577 18 581 1.39e-112 348
MS.gene09962.t1 MTR_4g033375 38.264 507 285 6 11 515 16 496 3.03e-112 344
MS.gene09962.t1 MTR_7g006540 35.035 568 341 9 26 576 62 618 3.13e-112 348
MS.gene09962.t1 MTR_4g033330 37.343 557 314 8 2 552 6 533 1.17e-111 344
MS.gene09962.t1 MTR_4g107510 35.209 551 344 7 30 571 39 585 1.51e-110 343
MS.gene09962.t1 MTR_1g085090 35.866 566 327 14 25 580 17 556 1.55e-110 343
MS.gene09962.t1 MTR_4g107580 32.881 590 378 9 1 581 1 581 1.07e-109 341
MS.gene09962.t1 MTR_7g088820 36.247 469 294 4 116 581 4 470 1.08e-108 335
MS.gene09962.t1 MTR_3g014790 35.689 566 335 8 24 581 14 558 1.75e-108 337
MS.gene09962.t1 MTR_7g111260 36.625 557 319 13 25 572 17 548 4.27e-108 336
MS.gene09962.t1 MTR_4g033395 37.328 509 291 6 11 517 16 498 2.02e-106 329
MS.gene09962.t1 MTR_7g098150 40.179 448 252 4 7 451 17 451 9.79e-106 327
MS.gene09962.t1 MTR_8g469470 33.219 584 366 9 3 570 6 581 2.55e-105 329
MS.gene09962.t1 MTR_4g123537 34.495 574 344 11 7 571 21 571 1.86e-100 317
MS.gene09962.t1 MTR_5g038190 32.292 576 373 7 4 570 1 568 2.59e-100 316
MS.gene09962.t1 MTR_4g033325 36.943 471 264 7 112 578 18 459 2.51e-98 307
MS.gene09962.t1 MTR_8g103233 34.296 554 339 9 24 567 15 553 5.82e-98 310
MS.gene09962.t1 MTR_2g101650 30.648 571 369 10 24 581 21 577 7.60e-98 310
MS.gene09962.t1 MTR_4g033325 37.194 449 257 6 134 578 6 433 7.91e-96 300
MS.gene09962.t1 MTR_4g033385 35.524 487 280 8 96 578 4 460 2.32e-94 296
MS.gene09962.t1 MTR_2g101640 31.239 573 364 10 25 581 21 579 4.92e-93 298
MS.gene09962.t1 MTR_4g011280 31.227 554 348 10 29 567 34 569 9.87e-93 297
MS.gene09962.t1 MTR_2g101590 31.826 553 356 11 25 567 24 565 1.25e-91 295
MS.gene09962.t1 MTR_7g064780 31.404 570 370 11 23 581 22 581 5.72e-90 289
MS.gene09962.t1 MTR_2g101610 31.769 554 356 12 24 567 25 566 1.98e-89 289
MS.gene09962.t1 MTR_1g026740 30.769 546 360 11 29 567 19 553 4.83e-88 283
MS.gene09962.t1 MTR_4g107610 31.317 562 368 8 23 576 27 578 3.27e-86 280
MS.gene09962.t1 MTR_7g064800 30.928 582 382 10 14 581 12 587 1.80e-85 278
MS.gene09962.t1 MTR_2g093180 32.796 558 335 11 26 571 20 549 2.09e-85 276
MS.gene09962.t1 MTR_2g093640 32.374 556 339 10 26 571 20 548 8.47e-85 275
MS.gene09962.t1 MTR_4g024930 32.168 572 342 13 5 567 18 552 7.96e-84 273
MS.gene09962.t1 MTR_1g026750 31.327 565 368 12 25 581 16 568 1.53e-83 272
MS.gene09962.t1 MTR_2g093160 31.949 554 344 9 26 571 20 548 1.76e-83 271
MS.gene09962.t1 MTR_2g101560 31.478 575 358 15 24 581 25 580 4.61e-82 270
MS.gene09962.t1 MTR_1g026770 30.347 547 360 11 29 567 17 550 5.38e-81 265
MS.gene09962.t1 MTR_1g057460 31.016 561 332 14 24 567 42 564 3.42e-80 263
MS.gene09962.t1 MTR_1g009200 29.799 547 361 7 25 561 25 558 2.26e-78 259
MS.gene09962.t1 MTR_7g098210 31.520 533 268 11 46 571 1 443 4.04e-76 249
MS.gene09962.t1 MTR_1g057460 30.755 530 313 13 55 567 1 493 6.92e-75 247
MS.gene09962.t1 MTR_6g008690 32.246 552 316 13 43 572 23 538 1.16e-74 248
MS.gene09962.t1 MTR_0236s0050 32.264 530 305 15 55 567 1 493 3.45e-73 243
MS.gene09962.t1 MTR_7g051880 31.777 557 335 11 14 567 11 525 6.54e-70 234
MS.gene09962.t1 MTR_7g052600 32.504 563 335 13 8 567 5 525 1.74e-69 233
MS.gene09962.t1 MTR_7g051830 31.139 562 342 10 9 567 6 525 4.89e-65 221
MS.gene09962.t1 MTR_4g033310 37.895 285 168 2 296 578 218 495 6.52e-62 213
MS.gene09962.t1 MTR_4g033310 39.062 192 107 2 2 193 6 187 1.21e-32 131
MS.gene09962.t1 MTR_1g009170 27.114 402 234 9 153 549 9 356 7.36e-37 141
MS.gene09962.t1 MTR_3g065350 39.752 161 89 4 339 499 1 153 4.62e-26 105
MS.gene09962.t1 MTR_2g093650 26.702 191 83 4 358 548 45 178 8.61e-14 71.2
MS.gene09962.t1 MTR_4g033390 34.737 95 60 1 487 579 30 124 2.89e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09962.t1 AT1G12110 60.549 583 220 6 3 580 2 579 0.0 697
MS.gene09962.t1 AT2G26690 53.203 562 242 8 12 567 9 555 0.0 571
MS.gene09962.t1 AT2G26690 52.710 535 232 8 39 567 3 522 0.0 535
MS.gene09962.t1 AT2G26690 52.381 525 229 8 49 567 1 510 0.0 523
MS.gene09962.t1 AT3G21670 48.936 564 260 7 14 570 16 558 9.70e-180 520
MS.gene09962.t1 AT5G01180 43.627 557 303 6 17 570 15 563 9.99e-164 479
MS.gene09962.t1 AT5G01180 43.627 557 303 6 17 570 15 563 9.99e-164 479
MS.gene09962.t1 AT5G01180 43.627 557 303 6 17 570 15 563 9.99e-164 479
MS.gene09962.t1 AT3G54140 42.328 567 313 7 7 570 8 563 1.41e-157 463
MS.gene09962.t1 AT3G54140 42.328 567 313 7 7 570 8 563 1.41e-157 463
MS.gene09962.t1 AT2G02040 40.998 561 322 6 17 575 31 584 7.71e-147 436
MS.gene09962.t1 AT1G68570 41.638 574 323 7 7 574 5 572 1.70e-139 417
MS.gene09962.t1 AT1G59740 38.869 566 327 6 14 573 28 580 4.30e-137 411
MS.gene09962.t1 AT1G68570 42.435 542 302 5 39 574 5 542 5.56e-137 410
MS.gene09962.t1 AT5G46050 39.146 562 320 5 17 570 17 564 2.35e-136 409
MS.gene09962.t1 AT1G62200 39.820 555 315 8 17 565 42 583 1.40e-134 405
MS.gene09962.t1 AT5G46040 38.462 572 332 7 17 581 17 575 5.54e-132 398
MS.gene09962.t1 AT1G62200 38.660 582 313 10 17 565 56 626 5.30e-131 397
MS.gene09962.t1 AT1G62200 38.660 582 313 10 17 565 42 612 5.52e-131 397
MS.gene09962.t1 AT1G33440 38.850 574 316 10 6 567 17 567 4.34e-125 381
MS.gene09962.t1 AT2G02020 37.912 546 295 7 17 561 32 534 4.56e-125 379
MS.gene09962.t1 AT2G40460 39.199 574 327 8 7 577 8 562 6.51e-124 377
MS.gene09962.t1 AT4G21680 39.860 572 324 8 7 569 12 572 2.04e-122 374
MS.gene09962.t1 AT1G32450 36.824 573 346 9 17 581 27 591 3.33e-122 374
MS.gene09962.t1 AT3G53960 36.870 575 344 9 2 570 12 573 9.93e-122 372
MS.gene09962.t1 AT3G54450 35.739 568 343 5 17 580 3 552 1.98e-120 367
MS.gene09962.t1 AT2G37900 35.052 582 349 9 2 576 13 572 2.77e-120 367
MS.gene09962.t1 AT1G69870 36.684 567 339 8 25 581 49 605 4.17e-120 369
MS.gene09962.t1 AT1G72140 36.457 587 318 9 2 573 9 555 3.31e-115 354
MS.gene09962.t1 AT5G19640 36.996 546 314 10 28 567 60 581 4.13e-113 350
MS.gene09962.t1 AT5G13400 35.149 569 345 8 23 577 60 618 1.97e-112 349
MS.gene09962.t1 AT1G27040 37.500 560 327 8 17 569 13 556 7.98e-110 340
MS.gene09962.t1 AT1G22570 37.368 570 328 9 9 570 12 560 8.10e-110 340
MS.gene09962.t1 AT1G27040 37.500 560 327 8 17 569 17 560 8.76e-110 340
MS.gene09962.t1 AT1G22540 39.572 561 304 9 17 570 20 552 2.38e-109 338
MS.gene09962.t1 AT1G69850 36.760 574 336 9 17 571 15 580 6.11e-109 338
MS.gene09962.t1 AT5G46050 39.440 464 259 5 115 570 3 452 6.32e-109 335
MS.gene09962.t1 AT1G22550 35.802 567 334 8 12 570 15 559 2.45e-108 336
MS.gene09962.t1 AT2G37900 35.686 510 299 9 74 576 6 493 8.74e-107 330
MS.gene09962.t1 AT1G72120 34.974 569 338 7 8 570 10 552 2.25e-105 328
MS.gene09962.t1 AT1G27040 38.274 533 312 8 41 569 9 528 2.80e-105 327
MS.gene09962.t1 AT1G72125 33.854 576 347 8 8 574 10 560 8.59e-105 327
MS.gene09962.t1 AT2G02020 34.799 546 291 8 17 561 32 513 4.21e-104 324
MS.gene09962.t1 AT1G72130 36.607 560 305 10 19 570 16 533 8.34e-102 318
MS.gene09962.t1 AT1G18880 33.333 552 352 7 30 571 22 567 1.32e-100 317
MS.gene09962.t1 AT5G62680 32.686 566 361 9 30 581 46 605 2.20e-100 317
MS.gene09962.t1 AT3G47960 34.103 563 351 10 21 570 53 608 8.38e-100 316
MS.gene09962.t1 AT5G62730 34.386 570 334 11 17 573 46 588 9.35e-100 315
MS.gene09962.t1 AT3G25260 34.901 553 310 9 17 567 11 515 1.16e-99 312
MS.gene09962.t1 AT1G22570 36.784 541 313 9 38 570 4 523 2.40e-98 309
MS.gene09962.t1 AT5G62730 34.296 554 324 11 33 573 3 529 2.08e-96 304
MS.gene09962.t1 AT1G27080 34.446 569 340 11 25 581 12 559 2.69e-96 305
MS.gene09962.t1 AT1G52190 30.404 569 375 9 13 567 5 566 1.18e-92 297
MS.gene09962.t1 AT3G25280 34.712 556 313 14 17 567 11 521 1.77e-92 294
MS.gene09962.t1 AT3G16180 31.419 592 372 13 13 581 5 585 2.98e-92 295
MS.gene09962.t1 AT1G27080 34.328 536 319 11 58 581 3 517 1.69e-85 276
MS.gene09962.t1 AT3G45710 29.338 559 359 10 22 573 18 547 4.83e-84 273
MS.gene09962.t1 AT3G45660 30.404 569 364 10 14 577 8 549 1.02e-83 272
MS.gene09962.t1 AT3G45660 30.404 569 364 10 14 577 8 549 1.02e-83 272
MS.gene09962.t1 AT3G45660 30.404 569 364 10 14 577 29 570 2.34e-83 271
MS.gene09962.t1 AT3G45650 29.730 555 360 9 23 573 18 546 5.86e-81 265
MS.gene09962.t1 AT5G14940 31.250 544 327 9 43 567 23 538 8.38e-81 264
MS.gene09962.t1 AT3G45680 30.142 564 355 12 26 581 19 551 2.05e-80 263
MS.gene09962.t1 AT1G72130 36.301 438 239 7 139 569 10 414 6.92e-80 258
MS.gene09962.t1 AT1G72130 36.301 438 239 7 139 569 10 414 6.92e-80 258
MS.gene09962.t1 AT3G45700 28.571 553 358 9 26 573 15 535 5.18e-78 257
MS.gene09962.t1 AT5G28470 28.623 559 375 10 25 573 15 559 3.32e-77 255
MS.gene09962.t1 AT3G45720 28.520 561 365 11 27 581 19 549 2.01e-76 253
MS.gene09962.t1 AT3G45650 28.399 581 360 10 23 573 18 572 7.11e-76 252
MS.gene09962.t1 AT3G01350 30.703 583 351 12 24 581 4 558 1.55e-75 251
MS.gene09962.t1 AT5G28470 28.801 559 372 12 25 573 15 557 1.99e-75 250
MS.gene09962.t1 AT1G69860 28.725 557 367 8 24 571 15 550 1.17e-73 245
MS.gene09962.t1 AT3G45690 28.419 563 327 15 26 581 17 510 3.57e-67 227
MS.gene09962.t1 AT5G11570 26.257 537 307 10 37 567 23 476 8.52e-48 174
MS.gene09962.t1 AT2G38100 28.544 529 328 15 55 573 2 490 1.84e-46 171
MS.gene09962.t1 AT2G38100 28.492 537 332 16 55 581 18 512 2.84e-46 171
MS.gene09962.t1 AT2G38100 28.492 537 332 16 55 581 24 518 3.50e-46 171

Find 141 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTGTTCGGTGGCTTTCT+AGG 0.219772 5.2:-4686056 MS.gene09962:CDS
TTATGATTATTACTGGCTTT+TGG 0.247074 5.2:-4683934 MS.gene09962:CDS
CAAATGACACGGTCATAAAA+AGG 0.247824 5.2:+4684377 None:intergenic
ATCAACCAGAAAACACTTAA+TGG 0.249004 5.2:+4684182 None:intergenic
AGGAGAGTCCTTTATGTATA+TGG 0.250618 5.2:-4684135 MS.gene09962:CDS
TGCTAAGAATGCTCCCTATA+TGG 0.255287 5.2:-4684553 MS.gene09962:CDS
ATTCTTGAGCTCAAGATCTT+TGG 0.255372 5.2:-4684051 MS.gene09962:CDS
GGAGGCTTTATGATTATTAC+TGG 0.269804 5.2:-4683941 MS.gene09962:CDS
ACTTCAGCTTCCATGATATT+AGG 0.285256 5.2:-4686300 MS.gene09962:intron
TTTAACAGGTACAATGCATT+TGG 0.293906 5.2:-4686135 MS.gene09962:CDS
GAGAATAGTTCCAATTAAAA+AGG 0.305994 5.2:+4684409 None:intergenic
ACTAGGCATAACCGTGAATT+TGG 0.307350 5.2:-4686165 MS.gene09962:CDS
AATTTGGTCACATATTTAAC+AGG 0.308170 5.2:-4686149 MS.gene09962:CDS
AGTTCTTTCAATCTTATCTA+TGG 0.319020 5.2:-4684285 MS.gene09962:CDS
TTCTTGAGCTCAAGATCTTT+GGG 0.322864 5.2:-4684050 MS.gene09962:CDS
AAATCCAGTGTCCCTGGCTT+TGG 0.323797 5.2:-4685218 MS.gene09962:CDS
GGGCATCAACCATCGTGTTT+TGG 0.330504 5.2:-4684532 MS.gene09962:CDS
CAGGGTAGAGATTGGGGTTA+TGG 0.343473 5.2:-4685065 MS.gene09962:CDS
CACTTCTTCTACATCGGTTA+AGG 0.362617 5.2:+4684583 None:intergenic
CGATGTAGAAGAAGTGAAAT+TGG 0.367647 5.2:-4684576 MS.gene09962:CDS
ATATGGTTAAATTTCTCAAT+TGG 0.370598 5.2:-4685154 MS.gene09962:CDS
TCTGCAATCCATGGTTTACT+TGG 0.374332 5.2:+4683978 None:intergenic
CAACTCCAGTATGCTGTAAA+GGG 0.380330 5.2:+4684312 None:intergenic
ATTTGCACAATCACATGGTT+TGG 0.380470 5.2:-4684228 MS.gene09962:CDS
CGATGGTTGATGCCCATATA+GGG 0.392623 5.2:+4684540 None:intergenic
CCCTGATGCCTATGACTGTA+AGG 0.397338 5.2:-4686358 MS.gene09962:CDS
TTAAGCACTTTCCTTGCAAC+TGG 0.398521 5.2:+4684353 None:intergenic
TGTTTACATACAAGATCATC+AGG 0.401362 5.2:-4685084 MS.gene09962:CDS
CTTACCCCTTTACAGCATAC+TGG 0.401457 5.2:-4684317 MS.gene09962:CDS
TCATTTATGCTATGTTTGTT+CGG 0.402554 5.2:-4686068 MS.gene09962:CDS
GGTATCACAGGCAACCACTA+TGG 0.403279 5.2:-4684480 MS.gene09962:CDS
ACGATGGTTGATGCCCATAT+AGG 0.404133 5.2:+4684539 None:intergenic
AGCAAACAATACACAGTTAA+CGG 0.404699 5.2:-4685288 MS.gene09962:CDS
CGTAAACCTAGGATCTCTTA+TGG 0.404734 5.2:-4685120 MS.gene09962:CDS
TACCGCACAGCAAACAGTTT+CGG 0.411818 5.2:-4684824 MS.gene09962:intron
AGATCATCAGGGTAGAGATT+GGG 0.416744 5.2:-4685072 MS.gene09962:CDS
TCCACAGTGAATAAAATAAC+AGG 0.418647 5.2:-4684002 MS.gene09962:CDS
TATGTCACTGCACTTGGCAC+AGG 0.420682 5.2:-4685248 MS.gene09962:CDS
CCAACTCCAGTATGCTGTAA+AGG 0.422699 5.2:+4684311 None:intergenic
TATAAATTTGATGATATACT+TGG 0.422701 5.2:-4683898 MS.gene09962:CDS
AGCACTTTCATAGTCCTTGA+TGG 0.425990 5.2:+4684643 None:intergenic
TCAACCAGAAAACACTTAAT+GGG 0.427591 5.2:+4684183 None:intergenic
TGGAAAACCCTTACAGTCAT+AGG 0.432523 5.2:+4686350 None:intergenic
CCTTGCATGTTGGAGGACTT+AGG 0.434447 5.2:+4685330 None:intergenic
CCCTTACAGTCATAGGCATC+AGG 0.435507 5.2:+4686357 None:intergenic
TTAACAGGTACAATGCATTT+GGG 0.437090 5.2:-4686134 MS.gene09962:CDS
CCAGCAGAAAGATCTAAAAC+TGG 0.438694 5.2:-4686330 MS.gene09962:CDS
AAGATCATCAGGGTAGAGAT+TGG 0.456867 5.2:-4685073 MS.gene09962:CDS
CAATTTCACTTCTTCTACAT+CGG 0.458029 5.2:+4684577 None:intergenic
AACCTCTGCTTCTTGATCCT+CGG 0.458174 5.2:+4684846 None:intergenic
CATGTTGGAGGACTTAGGCT+TGG 0.462061 5.2:+4685335 None:intergenic
GCGCTTTATGTCACTGCACT+TGG 0.467474 5.2:-4685254 MS.gene09962:CDS
AACAAAATTTGTAACTATGT+TGG 0.470158 5.2:+4686097 None:intergenic
TAAATATGTGACCAAATTCA+CGG 0.470251 5.2:+4686154 None:intergenic
TCGTGTTTGTGGCCGCTTGG+AGG 0.471555 5.2:-4684938 MS.gene09962:CDS
ATTCCTTACTGTTGCTTGAA+CGG 0.473367 5.2:+4685794 None:intergenic
CCTTTACAGCATACTGGAGT+TGG 0.477525 5.2:-4684311 MS.gene09962:CDS
TAGTTGTCCCATATACATAA+AGG 0.480422 5.2:+4684127 None:intergenic
GGAGAGTCCTTTATGTATAT+GGG 0.481210 5.2:-4684134 MS.gene09962:CDS
GTATGTTCCTTGCATGTTGG+AGG 0.481231 5.2:+4685323 None:intergenic
TTTATCAGGAGGAGAAGTGA+TGG 0.484364 5.2:-4686201 MS.gene09962:intron
ATGTCACTGCACTTGGCACA+GGG 0.486739 5.2:-4685247 MS.gene09962:CDS
ACCACTATGGATCGCCGCAT+TGG 0.488826 5.2:-4684467 MS.gene09962:CDS
AATTGATCTGAACCAAAGCC+AGG 0.490669 5.2:+4685206 None:intergenic
TTGTGGCCGCTTGGAGGAAG+AGG 0.491260 5.2:-4684932 MS.gene09962:CDS
ATTTGTGAGACCTAATATCA+TGG 0.491709 5.2:+4686290 None:intergenic
TCAGATTGCGGTCGTGTTTG+TGG 0.492490 5.2:-4684949 MS.gene09962:CDS
ACGACCGCAATCTGAGTCAA+TGG 0.494754 5.2:+4684957 None:intergenic
AAGGATGTCATTGATGCTGC+TGG 0.496784 5.2:+4684428 None:intergenic
GCTAAGAATGCTCCCTATAT+GGG 0.497028 5.2:-4684552 MS.gene09962:CDS
TAAAGAAGAGAAGAAACATA+TGG 0.498104 5.2:-4685171 MS.gene09962:CDS
CGGTCGTGTTTGTGGCCGCT+TGG 0.498598 5.2:-4684941 MS.gene09962:CDS
TGAACCAAAGCCAGGGACAC+TGG 0.499870 5.2:+4685214 None:intergenic
TAAGTATCGGTACAAGAAAC+CGG 0.503825 5.2:-4684988 MS.gene09962:CDS
GTCACTGCACTTGGCACAGG+GGG 0.504363 5.2:-4685245 MS.gene09962:CDS
TCCAATGCGGCGATCCATAG+TGG 0.504898 5.2:+4684466 None:intergenic
TAGGCGACACTTACATTGGA+AGG 0.509164 5.2:-4686037 MS.gene09962:intron
CTTAATGGGATCTTTGCCGT+TGG 0.512854 5.2:+4684197 None:intergenic
TTTGGACAAAGCGGCCATCA+AGG 0.514200 5.2:-4684657 MS.gene09962:CDS
GGTTTAAAATCCAGTGTCCC+TGG 0.528879 5.2:-4685224 MS.gene09962:CDS
CAGGAGGAGAAGTGATGGAG+AGG 0.532787 5.2:-4686196 MS.gene09962:CDS
CCTCGGTGGTTCATGTAAGA+TGG 0.536385 5.2:+4684863 None:intergenic
CTGCAAAGACAGCGATATTG+AGG 0.538484 5.2:+4685817 None:intergenic
GTGTCATTTGTCCAGTTGCA+AGG 0.542614 5.2:-4684364 MS.gene09962:CDS
GATGACACTCTCGGTATCAC+AGG 0.543941 5.2:-4684492 MS.gene09962:CDS
ATTTGTAACTATGTTGGCAG+AGG 0.544121 5.2:+4686103 None:intergenic
TTAAGATTATCTGCAATCCA+TGG 0.549313 5.2:+4683969 None:intergenic
TATGTGGAACATGTAAGTAT+CGG 0.552487 5.2:-4685001 MS.gene09962:CDS
AATAATCATAAAGCCTCCCT+TGG 0.555546 5.2:+4683946 None:intergenic
AAAGATCTAAAACTGGTGGT+TGG 0.556347 5.2:-4686323 MS.gene09962:CDS
TTCTCAGAGAATGTCCAGAT+GGG 0.558361 5.2:-4684097 MS.gene09962:CDS
ATCAAGGACTATGAAAGTGC+TGG 0.558831 5.2:-4684641 MS.gene09962:CDS
TTTCTCAGAGAATGTCCAGA+TGG 0.560013 5.2:-4684098 MS.gene09962:CDS
GTATGTGTACAAGGATAAGA+AGG 0.564955 5.2:-4683862 MS.gene09962:CDS
TGGGATGAAAACTATGAGCA+TGG 0.566517 5.2:-4684078 MS.gene09962:CDS
GATCATCAGGGTAGAGATTG+GGG 0.567129 5.2:-4685071 MS.gene09962:CDS
TCACTGCCATAAGAGATCCT+AGG 0.569563 5.2:+4685114 None:intergenic
CAGATAATCTTAACCAAGGG+AGG 0.574651 5.2:-4683959 MS.gene09962:CDS
GTTGTATGTTCCTTGCATGT+TGG 0.576661 5.2:+4685320 None:intergenic
TTTATGCTATGTTTGTTCGG+TGG 0.579483 5.2:-4686065 MS.gene09962:CDS
TGCAAAGTGGTATGTGTACA+AGG 0.585233 5.2:-4683871 MS.gene09962:CDS
CCTGATGCCTATGACTGTAA+GGG 0.586443 5.2:-4686357 MS.gene09962:CDS
GAATCATGAAGATAAGTAAG+TGG 0.587811 5.2:-4684616 MS.gene09962:CDS
TTTCTAGGCGACACTTACAT+TGG 0.589042 5.2:-4686041 MS.gene09962:CDS
TATTACTTCATCGTAAACCT+AGG 0.589827 5.2:-4685131 MS.gene09962:CDS
GAACAAACATAGCATAAATG+AGG 0.591138 5.2:+4686070 None:intergenic
TGAGTCAATGGACTACCTAC+CGG 0.592200 5.2:+4684969 None:intergenic
CCTAAGTCCTCCAACATGCA+AGG 0.595704 5.2:-4685330 MS.gene09962:CDS
GATAAGAAGGTTGCTGAGGA+AGG 0.597576 5.2:-4683849 MS.gene09962:CDS
CTCTGCTTCTTGATCCTCGG+TGG 0.598843 5.2:+4684849 None:intergenic
AAGAGCAACGTGGAATCAGA+AGG 0.599054 5.2:+4684897 None:intergenic
GATGATCTTGTATGTAAACA+AGG 0.604754 5.2:+4685087 None:intergenic
GAAGGTTGCTGAGGAAGGCA+CGG 0.607222 5.2:-4683844 MS.gene09962:CDS
TTAACATTTGCACAATCACA+TGG 0.609665 5.2:-4684233 MS.gene09962:CDS
GGGATGAAAACTATGAGCAT+GGG 0.611383 5.2:-4684077 MS.gene09962:CDS
AGTTCAAATGATGACACTCT+CGG 0.615015 5.2:-4684501 MS.gene09962:CDS
CAAGGATAAGAAGGTTGCTG+AGG 0.616944 5.2:-4683853 MS.gene09962:CDS
AAGGACTATGAAAGTGCTGG+TGG 0.625211 5.2:-4684638 MS.gene09962:CDS
ATGGAGAGGTTGACAACACT+AGG 0.626970 5.2:-4686182 MS.gene09962:CDS
TTGCAGATAATCTTAACCAA+GGG 0.627914 5.2:-4683962 MS.gene09962:CDS
TGGTTTGGTGAATGATCCAA+CGG 0.633408 5.2:-4684213 MS.gene09962:CDS
ATTGCAGATAATCTTAACCA+AGG 0.634000 5.2:-4683963 MS.gene09962:CDS
CACCGAGGATCAAGAAGCAG+AGG 0.635285 5.2:-4684848 MS.gene09962:CDS
CCTTACAGTCATAGGCATCA+GGG 0.637502 5.2:+4686358 None:intergenic
ATTGATCTGAACCAAAGCCA+GGG 0.638982 5.2:+4685207 None:intergenic
TAACAGGTCCAAGTAAACCA+TGG 0.640549 5.2:-4683986 MS.gene09962:CDS
AGGATGTCATTGATGCTGCT+GGG 0.641365 5.2:+4684429 None:intergenic
TGTAAAGGGGTAAGCCCTTG+TGG 0.646381 5.2:+4684326 None:intergenic
AACTCCAGTATGCTGTAAAG+GGG 0.649597 5.2:+4684313 None:intergenic
GCAGAAAGATCTAAAACTGG+TGG 0.653653 5.2:-4686327 MS.gene09962:CDS
TAGTCCATTGACTCAGATTG+CGG 0.654481 5.2:-4684961 MS.gene09962:CDS
TATCGGTACAAGAAACCGGT+AGG 0.659573 5.2:-4684984 MS.gene09962:CDS
TACCGAAACTGTTTGCTGTG+CGG 0.669157 5.2:+4684822 None:intergenic
TGTCACTGCACTTGGCACAG+GGG 0.685312 5.2:-4685246 MS.gene09962:CDS
GTTTACATACAAGATCATCA+GGG 0.688578 5.2:-4685083 MS.gene09962:CDS
TTGCAACTGGACAAATGACA+CGG 0.695191 5.2:+4684366 None:intergenic
CAAGTGCCTCTTCCTCCAAG+CGG 0.708297 5.2:+4684926 None:intergenic
TATACTTGGCTTGTGCAAAG+TGG 0.710999 5.2:-4683884 MS.gene09962:CDS
TTGAACAGTCCAAAACACGA+TGG 0.740184 5.2:+4684523 None:intergenic
CCATCTTACATGAACCACCG+AGG 0.777518 5.2:-4684863 MS.gene09962:CDS
ATCGTCGTTAAAGAGCAACG+TGG 0.836130 5.2:+4684887 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTATTCATAATTTAAT+AGG - chr5.2:4684839-4684858 MS.gene09962:CDS 10.0%
!!! ATTATGATGAATTTTTTTAT+AGG + chr5.2:4684740-4684759 None:intergenic 10.0%
!!! GTTTTATTCATAATTTAATA+GGG - chr5.2:4684840-4684859 MS.gene09962:CDS 10.0%
!! TAAAATCAATACAAAAGAAA+CGG + chr5.2:4683996-4684015 None:intergenic 15.0%
!!! AGATATATTTTATAAAGTGT+CGG - chr5.2:4685467-4685486 MS.gene09962:intron 15.0%
!!! GAAATGTTGATTATTAAATT+GGG + chr5.2:4684513-4684532 None:intergenic 15.0%
!!! TATAAATTTGATGATATACT+TGG - chr5.2:4686331-4686350 MS.gene09962:CDS 15.0%
!!! TATAGGAAAATTTGTTTTAT+AGG + chr5.2:4684723-4684742 None:intergenic 15.0%
!!! TGAAATGTTGATTATTAAAT+TGG + chr5.2:4684514-4684533 None:intergenic 15.0%
!! AACAAAATTTGTAACTATGT+TGG + chr5.2:4684135-4684154 None:intergenic 20.0%
!! AATAAATTTATAGCAAGTTG+CGG + chr5.2:4684588-4684607 None:intergenic 20.0%
!! ATACAAAAGACAAAATCAAA+GGG + chr5.2:4684655-4684674 None:intergenic 20.0%
!! ATATGGTTAAATTTCTCAAT+TGG - chr5.2:4685075-4685094 MS.gene09962:CDS 20.0%
!! TATCTATAACACTATCTAAA+GGG - chr5.2:4684672-4684691 MS.gene09962:intron 20.0%
!!! AACATAGTTACAAATTTTGT+TGG - chr5.2:4684134-4684153 MS.gene09962:CDS 20.0%
! AATATCTACGATAAGATACA+AGG + chr5.2:4685444-4685463 None:intergenic 25.0%
! AATTTGGTCACATATTTAAC+AGG - chr5.2:4684080-4684099 MS.gene09962:CDS 25.0%
! AGTTCTTTCAATCTTATCTA+TGG - chr5.2:4685944-4685963 MS.gene09962:intron 25.0%
! ATACTTGTTCGATATTAGTA+AGG - chr5.2:4684617-4684636 MS.gene09962:CDS 25.0%
! ATATCTACGATAAGATACAA+GGG + chr5.2:4685443-4685462 None:intergenic 25.0%
! GAAATTTGATTGATACTGTT+AGG + chr5.2:4684332-4684351 None:intergenic 25.0%
! GAGAATAGTTCCAATTAAAA+AGG + chr5.2:4685823-4685842 None:intergenic 25.0%
! GATACAAAAGACAAAATCAA+AGG + chr5.2:4684656-4684675 None:intergenic 25.0%
! GTATCTATAACACTATCTAA+AGG - chr5.2:4684671-4684690 MS.gene09962:intron 25.0%
! TAAAGAAGAGAAGAAACATA+TGG - chr5.2:4685058-4685077 MS.gene09962:CDS 25.0%
! TAAATATGTGACCAAATTCA+CGG + chr5.2:4684078-4684097 None:intergenic 25.0%
! TACAAAAGACAAAATCAAAG+GGG + chr5.2:4684654-4684673 None:intergenic 25.0%
! TACACTACAGTAAAAAAAAG+CGG - chr5.2:4684761-4684780 MS.gene09962:intron 25.0%
! TCATTTATGCTATGTTTGTT+CGG - chr5.2:4684161-4684180 MS.gene09962:CDS 25.0%
!! TAAAGGGAATATGAGATTTT+TGG - chr5.2:4684688-4684707 MS.gene09962:intron 25.0%
!! TATATTTTCGAACAGCTTTT+TGG - chr5.2:4685554-4685573 MS.gene09962:intron 25.0%
!! TCAATGACATCCTTTTTAAT+TGG - chr5.2:4685810-4685829 MS.gene09962:CDS 25.0%
!!! TATGTGTCTTTTTGTTTATC+AGG - chr5.2:4684014-4684033 MS.gene09962:CDS 25.0%
!!! TTATGATTATTACTGGCTTT+TGG - chr5.2:4686295-4686314 MS.gene09962:intron 25.0%
!!! TTTGAAATGATTTTCCAATG+CGG + chr5.2:4685779-4685798 None:intergenic 25.0%
AAATGACACGGTCATAAAAA+GGG + chr5.2:4685854-4685873 None:intergenic 30.0%
AAGTGCTTAAAAATCCACAA+GGG - chr5.2:4685889-4685908 MS.gene09962:intron 30.0%
AGCAAACAATACACAGTTAA+CGG - chr5.2:4684941-4684960 MS.gene09962:CDS 30.0%
ATCAACCAGAAAACACTTAA+TGG + chr5.2:4686050-4686069 None:intergenic 30.0%
ATTGCAGATAATCTTAACCA+AGG - chr5.2:4686266-4686285 MS.gene09962:intron 30.0%
ATTTGTGAGACCTAATATCA+TGG + chr5.2:4683942-4683961 None:intergenic 30.0%
CAATTTCACTTCTTCTACAT+CGG + chr5.2:4685655-4685674 None:intergenic 30.0%
GAACAAACATAGCATAAATG+AGG + chr5.2:4684162-4684181 None:intergenic 30.0%
GAATCATGAAGATAAGTAAG+TGG - chr5.2:4685613-4685632 MS.gene09962:intron 30.0%
GATGATCTTGTATGTAAACA+AGG + chr5.2:4685145-4685164 None:intergenic 30.0%
GTTTACATACAAGATCATCA+GGG - chr5.2:4685146-4685165 MS.gene09962:CDS 30.0%
TAGTTGTCCCATATACATAA+AGG + chr5.2:4686105-4686124 None:intergenic 30.0%
TATGTGGAACATGTAAGTAT+CGG - chr5.2:4685228-4685247 MS.gene09962:CDS 30.0%
TATTACTTCATCGTAAACCT+AGG - chr5.2:4685098-4685117 MS.gene09962:CDS 30.0%
TCAACCAGAAAACACTTAAT+GGG + chr5.2:4686049-4686068 None:intergenic 30.0%
TCCACAGTGAATAAAATAAC+AGG - chr5.2:4686227-4686246 MS.gene09962:intron 30.0%
TGTTTACATACAAGATCATC+AGG - chr5.2:4685145-4685164 MS.gene09962:CDS 30.0%
TTAACAGGTACAATGCATTT+GGG - chr5.2:4684095-4684114 MS.gene09962:CDS 30.0%
TTAACATTTGCACAATCACA+TGG - chr5.2:4685996-4686015 MS.gene09962:intron 30.0%
TTAAGATTATCTGCAATCCA+TGG + chr5.2:4686263-4686282 None:intergenic 30.0%
TTGCAGATAATCTTAACCAA+GGG - chr5.2:4686267-4686286 MS.gene09962:intron 30.0%
TTTAACAGGTACAATGCATT+TGG - chr5.2:4684094-4684113 MS.gene09962:CDS 30.0%
! AAAGTGCTTAAAAATCCACA+AGG - chr5.2:4685888-4685907 MS.gene09962:intron 30.0%
! ACAATTTTGTCTTGTGTTGT+GGG + chr5.2:4683851-4683870 None:intergenic 30.0%
! AGTGTCGGAATACTATAATA+GGG - chr5.2:4685482-4685501 MS.gene09962:intron 30.0%
!! AAGTGTCGGAATACTATAAT+AGG - chr5.2:4685481-4685500 MS.gene09962:intron 30.0%
!!! ACCTGTTATTTTATTCACTG+TGG + chr5.2:4686231-4686250 None:intergenic 30.0%
AATAATCATAAAGCCTCCCT+TGG + chr5.2:4686286-4686305 None:intergenic 35.0%
ACTTCAGCTTCCATGATATT+AGG - chr5.2:4683929-4683948 MS.gene09962:CDS 35.0%
AGGAGAGTCCTTTATGTATA+TGG - chr5.2:4686094-4686113 MS.gene09962:CDS 35.0%
AGTTCAAATGATGACACTCT+CGG - chr5.2:4685728-4685747 MS.gene09962:intron 35.0%
ATTCTTGAGCTCAAGATCTT+TGG - chr5.2:4686178-4686197 MS.gene09962:CDS 35.0%
ATTTGCACAATCACATGGTT+TGG - chr5.2:4686001-4686020 MS.gene09962:intron 35.0%
ATTTGTAACTATGTTGGCAG+AGG + chr5.2:4684129-4684148 None:intergenic 35.0%
CAAATGACACGGTCATAAAA+AGG + chr5.2:4685855-4685874 None:intergenic 35.0%
CGATGTAGAAGAAGTGAAAT+TGG - chr5.2:4685653-4685672 MS.gene09962:intron 35.0%
GGAGAGTCCTTTATGTATAT+GGG - chr5.2:4686095-4686114 MS.gene09962:CDS 35.0%
GTATGTGTACAAGGATAAGA+AGG - chr5.2:4686367-4686386 MS.gene09962:CDS 35.0%
TTCTTGAGCTCAAGATCTTT+GGG - chr5.2:4686179-4686198 MS.gene09962:CDS 35.0%
TTTATGCTATGTTTGTTCGG+TGG - chr5.2:4684164-4684183 MS.gene09962:CDS 35.0%
! AAAGATCTAAAACTGGTGGT+TGG - chr5.2:4683906-4683925 MS.gene09962:CDS 35.0%
! AGATCCCATTAAGTGTTTTC+TGG - chr5.2:4686042-4686061 MS.gene09962:CDS 35.0%
! ATTCCTTACTGTTGCTTGAA+CGG + chr5.2:4684438-4684457 None:intergenic 35.0%
! CAATTTTGTCTTGTGTTGTG+GGG + chr5.2:4683850-4683869 None:intergenic 35.0%
! GACAATTTTGTCTTGTGTTG+TGG + chr5.2:4683852-4683871 None:intergenic 35.0%
! GGAGGCTTTATGATTATTAC+TGG - chr5.2:4686288-4686307 MS.gene09962:intron 35.0%
!! GTGTCTTTTTGTTTATCAGG+AGG - chr5.2:4684017-4684036 MS.gene09962:CDS 35.0%
!! TAAGTATCGGTACAAGAAAC+CGG - chr5.2:4685241-4685260 MS.gene09962:CDS 35.0%
!!! GCACTTGTTGTGTTTTTATG+TGG - chr5.2:4685212-4685231 MS.gene09962:CDS 35.0%
AACTCCAGTATGCTGTAAAG+GGG + chr5.2:4685919-4685938 None:intergenic 40.0%
AAGATCATCAGGGTAGAGAT+TGG - chr5.2:4685156-4685175 MS.gene09962:CDS 40.0%
AATTGATCTGAACCAAAGCC+AGG + chr5.2:4685026-4685045 None:intergenic 40.0%
ACTAGGCATAACCGTGAATT+TGG - chr5.2:4684064-4684083 MS.gene09962:CDS 40.0%
AGATCATCAGGGTAGAGATT+GGG - chr5.2:4685157-4685176 MS.gene09962:CDS 40.0%
AGCACTTTCATAGTCCTTGA+TGG + chr5.2:4685589-4685608 None:intergenic 40.0%
ATTGATCTGAACCAAAGCCA+GGG + chr5.2:4685025-4685044 None:intergenic 40.0%
CAACTCCAGTATGCTGTAAA+GGG + chr5.2:4685920-4685939 None:intergenic 40.0%
CAGATAATCTTAACCAAGGG+AGG - chr5.2:4686270-4686289 MS.gene09962:intron 40.0%
CATAGTATGCTTTATCCACC+AGG - chr5.2:4684558-4684577 MS.gene09962:CDS 40.0%
CGTAAACCTAGGATCTCTTA+TGG - chr5.2:4685109-4685128 MS.gene09962:CDS 40.0%
GATCCCACGATGAAAAATTG+CGG + chr5.2:4686074-4686093 None:intergenic 40.0%
GCTAAGAATGCTCCCTATAT+GGG - chr5.2:4685677-4685696 MS.gene09962:intron 40.0%
GGGATGAAAACTATGAGCAT+GGG - chr5.2:4686152-4686171 MS.gene09962:CDS 40.0%
GTTGTATGTTCCTTGCATGT+TGG + chr5.2:4684912-4684931 None:intergenic 40.0%
TAACAGGTCCAAGTAAACCA+TGG - chr5.2:4686243-4686262 MS.gene09962:intron 40.0%
TAGGGTGAGATGTAGTTAGT+TGG - chr5.2:4685500-4685519 MS.gene09962:intron 40.0%
TCTGCAATCCATGGTTTACT+TGG + chr5.2:4686254-4686273 None:intergenic 40.0%
TGCAAAGTGGTATGTGTACA+AGG - chr5.2:4686358-4686377 MS.gene09962:CDS 40.0%
TGCTAAGAATGCTCCCTATA+TGG - chr5.2:4685676-4685695 MS.gene09962:intron 40.0%
TGGAAAACCCTTACAGTCAT+AGG + chr5.2:4683882-4683901 None:intergenic 40.0%
TGGGATGAAAACTATGAGCA+TGG - chr5.2:4686151-4686170 MS.gene09962:CDS 40.0%
TTAAGCACTTTCCTTGCAAC+TGG + chr5.2:4685879-4685898 None:intergenic 40.0%
TTCAGTGTTTGATATCACCG+TGG + chr5.2:4684304-4684323 None:intergenic 40.0%
TTCTCAGAGAATGTCCAGAT+GGG - chr5.2:4686132-4686151 MS.gene09962:CDS 40.0%
TTGAACAGTCCAAAACACGA+TGG + chr5.2:4685709-4685728 None:intergenic 40.0%
TTGCAACTGGACAAATGACA+CGG + chr5.2:4685866-4685885 None:intergenic 40.0%
TTTATCAGGAGGAGAAGTGA+TGG - chr5.2:4684028-4684047 MS.gene09962:CDS 40.0%
TTTCTAGGCGACACTTACAT+TGG - chr5.2:4684188-4684207 MS.gene09962:CDS 40.0%
TTTCTCAGAGAATGTCCAGA+TGG - chr5.2:4686131-4686150 MS.gene09962:CDS 40.0%
! ATCAAGGACTATGAAAGTGC+TGG - chr5.2:4685588-4685607 MS.gene09962:intron 40.0%
! ATGCCGCAATTTTTCATCGT+GGG - chr5.2:4686068-4686087 MS.gene09962:CDS 40.0%
! ATTGAGGTATCTGTCACAGA+AGG + chr5.2:4684399-4684418 None:intergenic 40.0%
! CAATTTTTCATCGTGGGATC+AGG - chr5.2:4686074-4686093 MS.gene09962:CDS 40.0%
! CACTTCTTCTACATCGGTTA+AGG + chr5.2:4685649-4685668 None:intergenic 40.0%
! CCAGCAGAAAGATCTAAAAC+TGG - chr5.2:4683899-4683918 MS.gene09962:CDS 40.0%
! CTCATAGTTTTCATCCCATC+TGG + chr5.2:4686149-4686168 None:intergenic 40.0%
! CTGGTGGATAAAGCATACTA+TGG + chr5.2:4684560-4684579 None:intergenic 40.0%
! GAACAGCTTTTTGGACAAAG+CGG - chr5.2:4685563-4685582 MS.gene09962:intron 40.0%
! GCAGAAAGATCTAAAACTGG+TGG - chr5.2:4683902-4683921 MS.gene09962:CDS 40.0%
!! TAGTCCATTGACTCAGATTG+CGG - chr5.2:4685268-4685287 MS.gene09962:CDS 40.0%
!! TATACTTGGCTTGTGCAAAG+TGG - chr5.2:4686345-4686364 MS.gene09962:CDS 40.0%
!! TGGTTTGGTGAATGATCCAA+CGG - chr5.2:4686016-4686035 MS.gene09962:intron 40.0%
!!! CCAGTTTTAGATCTTTCTGC+TGG + chr5.2:4683902-4683921 None:intergenic 40.0%
!!! GGGAATATGAGATTTTTGGC+TGG - chr5.2:4684692-4684711 MS.gene09962:intron 40.0%
AACCTCTGCTTCTTGATCCT+CGG + chr5.2:4685386-4685405 None:intergenic 45.0%
AAGAGCAACGTGGAATCAGA+AGG + chr5.2:4685335-4685354 None:intergenic 45.0%
AAGGATGTCATTGATGCTGC+TGG + chr5.2:4685804-4685823 None:intergenic 45.0%
ACCGTGATTCTGGTAATCCA+CGG - chr5.2:4684284-4684303 MS.gene09962:CDS 45.0%
AGGATGTCATTGATGCTGCT+GGG + chr5.2:4685803-4685822 None:intergenic 45.0%
ATCGTCGTTAAAGAGCAACG+TGG + chr5.2:4685345-4685364 None:intergenic 45.0%
ATGGAGAGGTTGACAACACT+AGG - chr5.2:4684047-4684066 MS.gene09962:CDS 45.0%
CAAGGATAAGAAGGTTGCTG+AGG - chr5.2:4686376-4686395 MS.gene09962:CDS 45.0%
CACGATGTTAACCGTGATTC+TGG - chr5.2:4684274-4684293 MS.gene09962:CDS 45.0%
CCAACTCCAGTATGCTGTAA+AGG + chr5.2:4685921-4685940 None:intergenic 45.0%
CCTGATGCCTATGACTGTAA+GGG - chr5.2:4683872-4683891 MS.gene09962:CDS 45.0%
CCTTACAGTCATAGGCATCA+GGG + chr5.2:4683874-4683893 None:intergenic 45.0%
CCTTTACAGCATACTGGAGT+TGG - chr5.2:4685918-4685937 MS.gene09962:intron 45.0%
CTGCAAAGACAGCGATATTG+AGG + chr5.2:4684415-4684434 None:intergenic 45.0%
CTTAATGGGATCTTTGCCGT+TGG + chr5.2:4686035-4686054 None:intergenic 45.0%
CTTACCCCTTTACAGCATAC+TGG - chr5.2:4685912-4685931 MS.gene09962:intron 45.0%
GATAAGAAGGTTGCTGAGGA+AGG - chr5.2:4686380-4686399 MS.gene09962:CDS 45.0%
GATCATCAGGGTAGAGATTG+GGG - chr5.2:4685158-4685177 MS.gene09962:CDS 45.0%
GTATGTTCCTTGCATGTTGG+AGG + chr5.2:4684909-4684928 None:intergenic 45.0%
TACCGCACAGCAAACAGTTT+CGG - chr5.2:4685405-4685424 MS.gene09962:intron 45.0%
TAGGCGACACTTACATTGGA+AGG - chr5.2:4684192-4684211 MS.gene09962:CDS 45.0%
TATCGGTACAAGAAACCGGT+AGG - chr5.2:4685245-4685264 MS.gene09962:CDS 45.0%
TCACTGCCATAAGAGATCCT+AGG + chr5.2:4685118-4685137 None:intergenic 45.0%
! ACCGTGGATTACCAGAATCA+CGG + chr5.2:4684288-4684307 None:intergenic 45.0%
! ACGATGGTTGATGCCCATAT+AGG + chr5.2:4685693-4685712 None:intergenic 45.0%
! CGATGGTTGATGCCCATATA+GGG + chr5.2:4685692-4685711 None:intergenic 45.0%
! GATGCCGCAATTTTTCATCG+TGG - chr5.2:4686067-4686086 MS.gene09962:CDS 45.0%
! GGTTTAAAATCCAGTGTCCC+TGG - chr5.2:4685005-4685024 MS.gene09962:CDS 45.0%
! TGTTTGTTCGGTGGCTTTCT+AGG - chr5.2:4684173-4684192 MS.gene09962:CDS 45.0%
!! AAGGACTATGAAAGTGCTGG+TGG - chr5.2:4685591-4685610 MS.gene09962:intron 45.0%
!! GTGTCATTTGTCCAGTTGCA+AGG - chr5.2:4685865-4685884 MS.gene09962:intron 45.0%
!! TACCGAAACTGTTTGCTGTG+CGG + chr5.2:4685410-4685429 None:intergenic 45.0%
!! TGAGTCAATGGACTACCTAC+CGG + chr5.2:4685263-4685282 None:intergenic 45.0%
AAATCCAGTGTCCCTGGCTT+TGG - chr5.2:4685011-4685030 MS.gene09962:CDS 50.0%
ACGACCGCAATCTGAGTCAA+TGG + chr5.2:4685275-4685294 None:intergenic 50.0%
ATGTCACTGCACTTGGCACA+GGG - chr5.2:4684982-4685001 MS.gene09962:CDS 50.0%
CAGCCGTTCAAGCAACAGTA+AGG - chr5.2:4684432-4684451 MS.gene09962:CDS 50.0%
CAGGGTAGAGATTGGGGTTA+TGG - chr5.2:4685164-4685183 MS.gene09962:CDS 50.0%
CATGTTGGAGGACTTAGGCT+TGG + chr5.2:4684897-4684916 None:intergenic 50.0%
CCATCTTACATGAACCACCG+AGG - chr5.2:4685366-4685385 MS.gene09962:CDS 50.0%
CCCTGATGCCTATGACTGTA+AGG - chr5.2:4683871-4683890 MS.gene09962:CDS 50.0%
CCCTTACAGTCATAGGCATC+AGG + chr5.2:4683875-4683894 None:intergenic 50.0%
CCTAAGTCCTCCAACATGCA+AGG - chr5.2:4684899-4684918 MS.gene09962:CDS 50.0%
CCTCGGTGGTTCATGTAAGA+TGG + chr5.2:4685369-4685388 None:intergenic 50.0%
CCTTGCATGTTGGAGGACTT+AGG + chr5.2:4684902-4684921 None:intergenic 50.0%
GATGACACTCTCGGTATCAC+AGG - chr5.2:4685737-4685756 MS.gene09962:intron 50.0%
GCGCTTTATGTCACTGCACT+TGG - chr5.2:4684975-4684994 MS.gene09962:CDS 50.0%
GGTATCACAGGCAACCACTA+TGG - chr5.2:4685749-4685768 MS.gene09962:intron 50.0%
TATGTCACTGCACTTGGCAC+AGG - chr5.2:4684981-4685000 MS.gene09962:CDS 50.0%
TCAGATTGCGGTCGTGTTTG+TGG - chr5.2:4685280-4685299 MS.gene09962:CDS 50.0%
TGTAAAGGGGTAAGCCCTTG+TGG + chr5.2:4685906-4685925 None:intergenic 50.0%
TTTGGACAAAGCGGCCATCA+AGG - chr5.2:4685572-4685591 MS.gene09962:intron 50.0%
! GGGCATCAACCATCGTGTTT+TGG - chr5.2:4685697-4685716 MS.gene09962:intron 50.0%
ACCACTATGGATCGCCGCAT+TGG - chr5.2:4685762-4685781 MS.gene09962:intron 55.0%
ATAGCAAGTTGCGGCGATCC+TGG + chr5.2:4684579-4684598 None:intergenic 55.0%
CAAGTGCCTCTTCCTCCAAG+CGG + chr5.2:4685306-4685325 None:intergenic 55.0%
CACCGAGGATCAAGAAGCAG+AGG - chr5.2:4685381-4685400 MS.gene09962:intron 55.0%
CTCTGCTTCTTGATCCTCGG+TGG + chr5.2:4685383-4685402 None:intergenic 55.0%
GAAGGTTGCTGAGGAAGGCA+CGG - chr5.2:4686385-4686404 MS.gene09962:CDS 55.0%
TCCAATGCGGCGATCCATAG+TGG + chr5.2:4685766-4685785 None:intergenic 55.0%
TGAACCAAAGCCAGGGACAC+TGG + chr5.2:4685018-4685037 None:intergenic 55.0%
TGTCACTGCACTTGGCACAG+GGG - chr5.2:4684983-4685002 MS.gene09962:CDS 55.0%
! CAGGAGGAGAAGTGATGGAG+AGG - chr5.2:4684033-4684052 MS.gene09962:CDS 55.0%
GTCACTGCACTTGGCACAGG+GGG - chr5.2:4684984-4685003 MS.gene09962:CDS 60.0%
TCGTGTTTGTGGCCGCTTGG+AGG - chr5.2:4685291-4685310 MS.gene09962:CDS 60.0%
TTGTGGCCGCTTGGAGGAAG+AGG - chr5.2:4685297-4685316 MS.gene09962:CDS 60.0%
CGGTCGTGTTTGTGGCCGCT+TGG - chr5.2:4685288-4685307 MS.gene09962:CDS 65.0%
GCAAGTTGCGGCGATCCTGG+TGG + chr5.2:4684576-4684595 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 4683836 4686415 4683836 ID=MS.gene09962
chr5.2 mRNA 4683836 4686415 4683836 ID=MS.gene09962.t1;Parent=MS.gene09962
chr5.2 exon 4686301 4686415 4686301 ID=MS.gene09962.t1.exon1;Parent=MS.gene09962.t1
chr5.2 CDS 4686301 4686415 4686301 ID=cds.MS.gene09962.t1;Parent=MS.gene09962.t1
chr5.2 exon 4686038 4686215 4686038 ID=MS.gene09962.t1.exon2;Parent=MS.gene09962.t1
chr5.2 CDS 4686038 4686215 4686038 ID=cds.MS.gene09962.t1;Parent=MS.gene09962.t1
chr5.2 exon 4685803 4685842 4685803 ID=MS.gene09962.t1.exon3;Parent=MS.gene09962.t1
chr5.2 CDS 4685803 4685842 4685803 ID=cds.MS.gene09962.t1;Parent=MS.gene09962.t1
chr5.2 exon 4684825 4685390 4684825 ID=MS.gene09962.t1.exon4;Parent=MS.gene09962.t1
chr5.2 CDS 4684825 4685390 4684825 ID=cds.MS.gene09962.t1;Parent=MS.gene09962.t1
chr5.2 exon 4683836 4684682 4683836 ID=MS.gene09962.t1.exon5;Parent=MS.gene09962.t1
chr5.2 CDS 4683836 4684682 4683836 ID=cds.MS.gene09962.t1;Parent=MS.gene09962.t1
Gene Sequence

>MS.gene09962

ATGGACACTCTCCCCACAACACAAGACAAAATTGTCCCTGATGCCTATGACTGTAAGGGTTTTCCAGCAGAAAGATCTAAAACTGGTGGTTGGACTTCAGCTTCCATGATATTAGGTCTCACAAATTAATCAATCACTCTCTTCTACTGCATGCATGCCGTTTCTTTTGTATTGATTTTATGTGTCTTTTTGTTTATCAGGAGGAGAAGTGATGGAGAGGTTGACAACACTAGGCATAACCGTGAATTTGGTCACATATTTAACAGGTACAATGCATTTGGGTAACGCTGCCTCTGCCAACATAGTTACAAATTTTGTTGGAACCTCATTTATGCTATGTTTGTTCGGTGGCTTTCTAGGCGACACTTACATTGGAAGGTTCGTATACTAGTTAATTAGTGCGTCGATGTTTTATTATCACGATGAGTTTGTCATAATCACGATGTTAACCGTGATTCTGGTAATCCACGGTGATATCAAACACTGAATTAGTCCTAACAGTATCAATCAAATTTCTTTTTAGTTTCATTTCATTCAAGTGATATTTCATTATTTTTGTTCCTTCTGTGACAGATACCTCAATATCGCTGTCTTTGCAGCCGTTCAAGCAACAGTAAGGAATCAAAACATGTTACTATTCATATTTGTTGCTAGCTACTAGTTTTGCTTTTACACCCAATTTAATAATCAACATTTCATTTTCATCTAAATATCTACACAACCATAGTATGCTTTATCCACCAGGATCGCCGCAACTTGCTATAAATTTATTATTATCTTTATACTTGTTCGATATTAGTAAGGTTTATTGTCTACCCCTTTGATTTTGTCTTTTGTATCTATAACACTATCTAAAGGGAATATGAGATTTTTGGCTGGATTTTCCTATAAAACAAATTTTCCTATAAAAAAATTCATCATAATTTACACTACAGTAAAAAAAAGCGGAGAAATTGAACGCTAGTTTCAAATAATAATGATAATTTAAGAGTTTAATTTTGATAGTTTTATTCATAATTTAATAGGGTGTTGCTCTCTTGATGATATCAACTATAATTCCAAGCCTAAGTCCTCCAACATGCAAGGAACATACAACTTGTGTAAAAGCAAACAATACACAGTTAACGGTTCTGTTTTTAGCGCTTTATGTCACTGCACTTGGCACAGGGGGTTTAAAATCCAGTGTCCCTGGCTTTGGTTCAGATCAATTTGATGCTACTGATAAAGAAGAGAAGAAACATATGGTTAAATTTCTCAATTGGTATTACTTCATCGTAAACCTAGGATCTCTTATGGCAGTGACAGTCCTTGTTTACATACAAGATCATCAGGGTAGAGATTGGGGTTATGGTATCTGTGCTTGTGCTATTGTGCTAGCACTTGTTGTGTTTTTATGTGGAACATGTAAGTATCGGTACAAGAAACCGGTAGGTAGTCCATTGACTCAGATTGCGGTCGTGTTTGTGGCCGCTTGGAGGAAGAGGCACTTGCAATTGCCTTCTGATTCCACGTTGCTCTTTAACGACGATGCCATCTTACATGAACCACCGAGGATCAAGAAGCAGAGGTTACCGCACAGCAAACAGTTTCGGTAACACTTTTTACCCTTGTATCTTATCGTAGATATTTGTAGATATATTTTATAAAGTGTCGGAATACTATAATAGGGTGAGATGTAGTTAGTTGGATGCATGTGTAAAGTTAACTGATAGTGTAAATATATTTTCGAACAGCTTTTTGGACAAAGCGGCCATCAAGGACTATGAAAGTGCTGGTGGAATCATGAAGATAAGTAAGTGGCATCTATCTACCTTAACCGATGTAGAAGAAGTGAAATTGGTGCTAAGAATGCTCCCTATATGGGCATCAACCATCGTGTTTTGGACTGTTCAAGTTCAAATGATGACACTCTCGGTATCACAGGCAACCACTATGGATCGCCGCATTGGAAAATCATTTCAAATCCCAGCAGCATCAATGACATCCTTTTTAATTGGAACTATTCTCTTGAATGTCCCTTTTTATGACCGTGTCATTTGTCCAGTTGCAAGGAAAGTGCTTAAAAATCCACAAGGGCTTACCCCTTTACAGCATACTGGAGTTGGTTTAGTTCTTTCAATCTTATCTATGGTTGCAGCAGCTCTTGTCGAACAAAAGCGATTAACATTTGCACAATCACATGGTTTGGTGAATGATCCAACGGCAAAGATCCCATTAAGTGTTTTCTGGTTGATGCCGCAATTTTTCATCGTGGGATCAGGAGAGTCCTTTATGTATATGGGACAACTAGACTTTTTTCTCAGAGAATGTCCAGATGGGATGAAAACTATGAGCATGGGACTATTCTTGAGCTCAAGATCTTTGGGATTTTTCTTCAGCTCTTTATTAGTGTCCACAGTGAATAAAATAACAGGTCCAAGTAAACCATGGATTGCAGATAATCTTAACCAAGGGAGGCTTTATGATTATTACTGGCTTTTGGCTATGTTGAGTGCTATAAATTTGATGATATACTTGGCTTGTGCAAAGTGGTATGTGTACAAGGATAAGAAGGTTGCTGAGGAAGGCACGGAAGAGTAA

Protein sequence

>MS.gene09962.t1

MDTLPTTQDKIVPDAYDCKGFPAERSKTGGWTSASMILGGEVMERLTTLGITVNLVTYLTGTMHLGNAASANIVTNFVGTSFMLCLFGGFLGDTYIGRYLNIAVFAAVQATGVALLMISTIIPSLSPPTCKEHTTCVKANNTQLTVLFLALYVTALGTGGLKSSVPGFGSDQFDATDKEEKKHMVKFLNWYYFIVNLGSLMAVTVLVYIQDHQGRDWGYGICACAIVLALVVFLCGTCKYRYKKPVGSPLTQIAVVFVAAWRKRHLQLPSDSTLLFNDDAILHEPPRIKKQRLPHSKQFRFLDKAAIKDYESAGGIMKISKWHLSTLTDVEEVKLVLRMLPIWASTIVFWTVQVQMMTLSVSQATTMDRRIGKSFQIPAASMTSFLIGTILLNVPFYDRVICPVARKVLKNPQGLTPLQHTGVGLVLSILSMVAAALVEQKRLTFAQSHGLVNDPTAKIPLSVFWLMPQFFIVGSGESFMYMGQLDFFLRECPDGMKTMSMGLFLSSRSLGFFFSSLLVSTVNKITGPSKPWIADNLNQGRLYDYYWLLAMLSAINLMIYLACAKWYVYKDKKVAEEGTEE