AlfalfaGEDB | MS.gene68946

M. sativa cultivar XinJiangDaYe / MS.gene68946

KEGG: -
GO: GO:0005575 GO:0006810 GO:0008150 GO:0016021 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF03595.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68946.t1	XP_003610460.1	95.6	295	7	1	1	295	1	289	4.20E-153	550.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68946.t1	Q5E930	51.0	302	129	5	27	320	12	302	6.4e-70	265.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68946.t1	G7JJA0	95.6	295	7	1	1	295	1	289	3.0e-153	550.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene68946	-0.873005	2.05E-67	-1.69E-46
MS.gene049217	MS.gene68946	-0.831098	2.02E-55	-1.69E-46
MS.gene049222	MS.gene68946	-0.84706	1.47E-59	-1.69E-46
MS.gene049285	MS.gene68946	-0.847101	1.43E-59	-1.69E-46
MS.gene049320	MS.gene68946	-0.841112	5.79E-58	-1.69E-46
MS.gene04939	MS.gene68946	-0.809478	1.86E-50	-1.69E-46
MS.gene049611	MS.gene68946	0.816618	5.04E-52	-1.69E-46
MS.gene049633	MS.gene68946	-0.873126	1.87E-67	-1.69E-46
MS.gene049634	MS.gene68946	0.82343	1.39E-53	-1.69E-46
MS.gene049805	MS.gene68946	-0.811371	7.24E-51	-1.69E-46

Showing 1 to 10 of 170 entries

Previous1 2 3 4 5…17Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68946.t1	MTR_4g132400	92.508	307	17	1	1	307	1	301	0.0	571
MS.gene68946.t1	MTR_4g049640	50.709	282	138	1	1	282	1	281	3.93e-84	258
MS.gene68946.t1	MTR_3g112530	52.941	238	110	2	45	281	43	279	1.28e-77	242
MS.gene68946.t1	MTR_4g101880	39.844	256	146	4	39	293	177	425	3.37e-54	186
MS.gene68946.t1	MTR_6g034030	37.838	259	153	4	38	296	227	477	2.63e-53	182
MS.gene68946.t1	MTR_6g034030	37.984	258	152	4	38	295	227	476	1.46e-52	182
MS.gene68946.t1	MTR_0549s0020	36.364	275	166	6	25	299	143	408	1.82e-51	178
MS.gene68946.t1	MTR_6g045200	37.209	258	154	5	38	295	218	467	2.21e-50	176

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68946.t1	AT1G62280	50.825	303	130	5	26	320	11	302	6.80e-91	276
MS.gene68946.t1	AT1G62262	49.186	307	126	5	19	320	13	294	2.11e-87	267
MS.gene68946.t1	AT5G24030	39.130	253	146	3	43	295	253	497	1.78e-53	183
MS.gene68946.t1	AT5G24030	39.130	253	146	3	43	295	253	497	1.50e-52	183
MS.gene68946.t1	AT4G27970	37.008	254	146	4	43	293	138	380	1.10e-48	167
MS.gene68946.t1	AT4G27970	37.008	254	146	4	43	293	138	380	1.10e-48	167
MS.gene68946.t1	AT1G12480	36.803	269	162	3	26	293	167	428	1.60e-48	171
MS.gene68946.t1	AT4G27970	37.008	254	146	4	43	293	138	380	1.42e-47	167
MS.gene68946.t1	AT4G27970	37.008	254	146	4	43	293	138	380	1.42e-47	167
MS.gene68946.t1	AT4G27970	37.603	242	137	4	55	293	1	231	6.58e-47	162

Showing 1 to 10 of 11 entries

Previous1 2Next

Find 53 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCTAAACGTTACATGG+TGG	0.692493	8.2:+1703827	MS.gene68946:CDS
AAGTTATGACAGAAATCGGT+TGG	0.554540	8.2:+1703448	MS.gene68946:CDS
AATGGTTCACTACTGAAAAG+AGG	0.541292	8.2:+1703361	MS.gene68946:CDS
AATGTGATGGCTTGGTGATT+GGG	0.406822	8.2:-1702918	None:intergenic
ACAATGAATCACAAACTCTT+TGG	0.388818	8.2:+1703043	MS.gene68946:CDS
ACTATAGAATAGAATGGGTG+AGG	0.549206	8.2:+1702813	None:intergenic
AGCACTAGTAGTATTGTTCG+TGG	0.515674	8.2:-1702875	None:intergenic
AGTAATAGATAAGCAACAGA+AGG	0.591520	8.2:-1703084	None:intergenic
AGTAGCAAACCCTGTCAACC+TGG	0.530614	8.2:+1703395	MS.gene68946:CDS
AGTTCCCTATAACAGAAACC+AGG	0.725065	8.2:-1703413	None:intergenic

Showing 1 to 10 of 53 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAATGAATCACAAACTCTT+TGG	+	chr8.2:1703043-1703062	MS.gene68946:CDS	30.0%
AGTAATAGATAAGCAACAGA+AGG	-	chr8.2:1703087-1703106	None:intergenic	30.0%
ATGAGAAGATATGAAATCCA+AGG	-	chr8.2:1703234-1703253	None:intergenic	30.0%
CACACAATTATGTCAATTGT+TGG	-	chr8.2:1702850-1702869	None:intergenic	30.0%
CATATAAAGAAAGGATAAGG+TGG	-	chr8.2:1703136-1703155	None:intergenic	30.0%
CCATTTCATTGTAATGATCA+AGG	+	chr8.2:1703756-1703775	MS.gene68946:intron	30.0%
CCTTGATCATTACAATGAAA+TGG	-	chr8.2:1703759-1703778	None:intergenic	30.0%
GAGCATATAAAGAAAGGATA+AGG	-	chr8.2:1703139-1703158	None:intergenic	30.0%
GATGAATTTGCACATCATAT+TGG	+	chr8.2:1703189-1703208	MS.gene68946:CDS	30.0%
GCAAAAAACAAGAAATAAGC+TGG	-	chr8.2:1703585-1703604	None:intergenic	30.0%

Showing 1 to 10 of 67 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	1702826	1703893	1702826	ID=MS.gene68946
chr8.2	mRNA	1702826	1703893	1702826	ID=MS.gene68946.t1;Parent=MS.gene68946
chr8.2	exon	1702826	1703707	1702826	ID=MS.gene68946.t1.exon1;Parent=MS.gene68946.t1
chr8.2	CDS	1702826	1703707	1702826	ID=cds.MS.gene68946.t1;Parent=MS.gene68946.t1
chr8.2	exon	1703801	1703893	1703801	ID=MS.gene68946.t1.exon2;Parent=MS.gene68946.t1
chr8.2	CDS	1703801	1703893	1703801	ID=cds.MS.gene68946.t1;Parent=MS.gene68946.t1

Gene Sequence

>MS.gene68946

ATGGGTGAGGTTGCAATCAAGCCAACAATTGACATAATTGTGTGTGCTTCCACGAACAATACTACTAGTGCTAAAAACATTGATAATTCCCACCCAATCACCAAGCCATCACATTCAGAGTCACAACCATTCTTAACTAAGATCCATGCAGGCTACTTTTTCATTTGTGTTTCCTTTGGTGCTCAAGCTTTGCTATGGAAGAGTTTAAGTGAACATAACAATGAATCACAAACTCTTTGGCATGGATTTAATTTCATGCCTTCTGTTGCTTATCTATTACTTTGGTGTCTTGCAGTACTCATTGCAGCCACCTTATCCTTTCTTTATATGCTCAAGTGCATCTTGCACTTTAATGCAGTGAAGGATGAATTTGCACATCATATTGGAGTTAACTACATGTATACTCCTTGGATTTCATATCTTCTCATGCTTCAAGCATCACCGCCTTGGATTGTTTCGAGAACTTGTTACTACGAGTTTCTTTGTCTAGCATTTTCTTTTGTAATATTTCTGCTTGATGTAAAACTTTTTGGACAATGGTTCACTACTGAAAAGAGGTTTCTGTCAGTAGTAGCAAACCCTGTCAACCTGGTTTCTGTTATAGGGAACTTGGTGGCTGCTCAAGTTATGACAGAAATCGGTTGGAACGAGATTGCAATTTCAATGTATTCATTAGGAATGGTACATTATTTGATTCTATTTGTGACGCTGTATCAGCGTCTAACAAGTAGTAATCAGTTTCCTGTAGTGCTAAGACCAGCTTATTTCTTGTTTTTTGCTGCACCAAGTATGGCAAGTCTAGCTTGGAAATCCATCTCAGGTGCTTTTCTCGTCTCATCAAAGATGCTGTTCTTTCTCTCTTTGTTCCTTTTTATTTCTCAGGTAGGTCCAAAATTACCCTATATATATTTAGTTGCTTATTTTGATCATCCATTTCATTGTAATGATCAAGGCTTATATAATGCAGGCTTGCAGGCCAGCACTGTTCAAGAAAACTATGAAAAGGCTAAACGTTACATGGTGGATTTACTCATTCCCTTTAACATTCCTTGGCTTAGCTTGTGCTGA

Protein sequence

>MS.gene68946.t1

MGEVAIKPTIDIIVCASTNNTTSAKNIDNSHPITKPSHSESQPFLTKIHAGYFFICVSFGAQALLWKSLSEHNNESQTLWHGFNFMPSVAYLLLWCLAVLIAATLSFLYMLKCILHFNAVKDEFAHHIGVNYMYTPWISYLLMLQASPPWIVSRTCYYEFLCLAFSFVIFLLDVKLFGQWFTTEKRFLSVVANPVNLVSVIGNLVAAQVMTEIGWNEIAISMYSLGMVHYLILFVTLYQRLTSSNQFPVVLRPAYFLFFAAPSMASLAWKSISGAFLVSSKMLFFLSLFLFISQASTVQENYEKAKRYMVDLLIPFNIPWLSLC