AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24522


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24522.t1 MTR_1g017140 95.254 295 13 1 5 298 47 341 0.0 581
MS.gene24522.t1 MTR_3g103570 50.323 310 111 13 5 297 47 330 1.44e-79 245
MS.gene24522.t1 MTR_5g014990 71.901 121 29 2 5 125 47 162 2.82e-53 176
MS.gene24522.t1 MTR_4g097570 82.828 99 17 0 5 103 47 145 1.29e-44 153
MS.gene24522.t1 MTR_4g097570 82.828 99 17 0 5 103 48 146 1.32e-44 153
MS.gene24522.t1 MTR_4g057635 87.671 73 9 0 5 77 47 119 1.52e-41 146
MS.gene24522.t1 MTR_4g128670 96.923 65 2 0 5 69 47 111 3.99e-40 143
MS.gene24522.t1 MTR_6g090405 54.198 131 46 2 5 135 47 163 9.85e-38 134
MS.gene24522.t1 MTR_1g017000 79.167 72 15 0 5 76 47 118 1.30e-37 134
MS.gene24522.t1 MTR_7g102110 77.778 72 16 0 5 76 47 118 6.21e-37 133
MS.gene24522.t1 MTR_2g095520 87.692 65 8 0 5 69 47 111 2.95e-36 132
MS.gene24522.t1 MTR_3g461490 71.233 73 21 0 5 77 46 118 2.53e-31 119
MS.gene24522.t1 MTR_3g097450 49.558 113 55 1 5 117 46 156 9.38e-31 117
MS.gene24522.t1 MTR_1g112760 54.167 96 43 1 5 100 47 141 1.63e-30 115
MS.gene24522.t1 MTR_0251s0050 63.514 74 27 0 2 75 44 117 3.66e-30 115
MS.gene24522.t1 MTR_1g043080 46.847 111 59 0 5 115 46 156 3.94e-30 114
MS.gene24522.t1 MTR_4g105130 69.444 72 22 0 5 76 46 117 4.51e-30 117
MS.gene24522.t1 MTR_7g110830 46.154 130 58 1 5 122 46 175 4.76e-30 117
MS.gene24522.t1 MTR_4g073420 64.865 74 26 0 5 78 46 119 5.29e-30 115
MS.gene24522.t1 MTR_6g009430 68.056 72 23 0 5 76 46 117 8.19e-30 115
MS.gene24522.t1 MTR_1g085640 68.919 74 23 0 5 78 46 119 9.23e-30 116
MS.gene24522.t1 MTR_3g077110 66.667 72 24 0 5 76 46 117 1.02e-29 115
MS.gene24522.t1 MTR_2g089450 38.125 160 93 2 2 157 43 200 1.40e-29 113
MS.gene24522.t1 MTR_1g085040 69.014 71 22 0 5 75 46 116 1.53e-29 115
MS.gene24522.t1 MTR_4g125520 61.176 85 28 1 5 89 46 125 3.19e-29 113
MS.gene24522.t1 MTR_0008s0390 61.333 75 29 0 2 76 44 118 4.07e-29 112
MS.gene24522.t1 MTR_8g095390 67.606 71 23 0 5 75 46 116 8.56e-29 112
MS.gene24522.t1 MTR_7g117730 61.728 81 26 1 5 85 46 121 1.20e-28 110
MS.gene24522.t1 MTR_1g100653 66.197 71 24 0 5 75 46 116 1.43e-28 111
MS.gene24522.t1 MTR_4g100720 67.143 70 23 0 5 74 47 116 1.72e-28 108
MS.gene24522.t1 MTR_4g485530 60.811 74 29 0 5 78 46 119 1.94e-28 108
MS.gene24522.t1 MTR_5g029840 65.278 72 25 0 5 76 46 117 2.56e-28 111
MS.gene24522.t1 MTR_0197s0010 46.154 130 57 3 1 117 31 160 3.73e-28 108
MS.gene24522.t1 MTR_7g076740 62.162 74 28 0 2 75 44 117 3.95e-28 110
MS.gene24522.t1 MTR_1g076150 49.533 107 49 1 5 111 46 147 4.03e-28 109
MS.gene24522.t1 MTR_5g007370 63.889 72 26 0 5 76 46 117 4.08e-28 110
MS.gene24522.t1 MTR_1g043050 52.000 100 48 0 5 104 46 145 4.28e-28 109
MS.gene24522.t1 MTR_4g478180 65.278 72 25 0 5 76 47 118 4.58e-28 111
MS.gene24522.t1 MTR_8g027345 64.789 71 25 0 5 75 46 116 4.80e-28 110
MS.gene24522.t1 MTR_3g074520 65.278 72 25 0 5 76 46 117 5.81e-28 110
MS.gene24522.t1 MTR_8g042410 63.889 72 26 0 3 74 69 140 5.92e-28 113
MS.gene24522.t1 MTR_7g115650 63.380 71 26 0 5 75 46 116 9.24e-28 107
MS.gene24522.t1 MTR_5g079670 58.333 72 30 0 5 76 45 116 9.84e-28 107
MS.gene24522.t1 MTR_0063s0090 51.648 91 44 0 5 95 46 136 1.35e-27 107
MS.gene24522.t1 MTR_0008s0470 57.333 75 32 0 2 76 44 118 1.41e-27 108
MS.gene24522.t1 MTR_3g052450 65.714 70 24 0 5 74 74 143 1.79e-27 112
MS.gene24522.t1 MTR_3g011610 38.674 181 72 6 5 152 71 245 1.80e-27 111
MS.gene24522.t1 MTR_3g052430 63.889 72 26 0 3 74 73 144 2.14e-27 111
MS.gene24522.t1 MTR_7g096930 63.380 71 26 0 5 75 46 116 2.30e-27 107
MS.gene24522.t1 MTR_4g065017 40.000 145 63 3 5 142 51 178 2.48e-27 108
MS.gene24522.t1 MTR_2g097910 63.380 71 26 0 5 75 54 124 2.55e-27 108
MS.gene24522.t1 MTR_4g082290 67.606 71 23 0 5 75 46 116 2.62e-27 110
MS.gene24522.t1 MTR_2g089420 40.323 124 71 2 2 122 42 165 2.95e-27 110
MS.gene24522.t1 MTR_2g011660 63.889 72 26 0 5 76 47 118 3.15e-27 108
MS.gene24522.t1 MTR_2g064160 58.442 77 32 0 2 78 42 118 3.22e-27 108
MS.gene24522.t1 MTR_2g089620 65.278 72 25 0 5 76 46 117 3.56e-27 108
MS.gene24522.t1 MTR_3g028740 64.789 71 25 0 5 75 56 126 3.78e-27 108
MS.gene24522.t1 MTR_4g091490 63.889 72 26 0 5 76 47 118 4.37e-27 108
MS.gene24522.t1 MTR_4g082230 67.606 71 23 0 5 75 46 116 4.60e-27 109
MS.gene24522.t1 MTR_2g099740 61.644 73 28 0 5 77 46 118 5.09e-27 109
MS.gene24522.t1 MTR_8g031360 62.500 72 27 0 5 76 48 119 5.56e-27 107
MS.gene24522.t1 MTR_8g020490 64.789 71 25 0 5 75 42 112 5.70e-27 106
MS.gene24522.t1 MTR_4g102380 62.500 72 27 0 5 76 46 117 7.15e-27 106
MS.gene24522.t1 MTR_3g083540 61.111 72 28 0 5 76 75 146 8.10e-27 107
MS.gene24522.t1 MTR_8g017340 64.384 73 26 0 5 77 47 119 9.40e-27 109
MS.gene24522.t1 MTR_1g045610 57.303 89 36 1 2 90 52 138 9.59e-27 105
MS.gene24522.t1 MTR_7g111290 71.875 64 18 0 5 68 4 67 1.05e-26 107
MS.gene24522.t1 MTR_8g098860 60.563 71 28 0 5 75 46 116 1.08e-26 107
MS.gene24522.t1 MTR_7g011170 64.789 71 25 0 5 75 46 116 1.91e-26 106
MS.gene24522.t1 MTR_8g017350 63.014 73 27 0 5 77 47 119 2.25e-26 108
MS.gene24522.t1 MTR_5g078140 64.789 71 25 0 5 75 46 116 2.76e-26 105
MS.gene24522.t1 MTR_1g062940 35.789 190 85 5 5 179 40 207 2.80e-26 103
MS.gene24522.t1 MTR_1g073170 56.977 86 35 1 5 90 54 137 3.50e-26 104
MS.gene24522.t1 MTR_7g111290 71.875 64 18 0 5 68 46 109 3.91e-26 106
MS.gene24522.t1 MTR_7g010210 64.384 73 26 0 3 75 44 116 4.65e-26 105
MS.gene24522.t1 MTR_3g065440 64.789 71 25 0 5 75 46 116 4.91e-26 105
MS.gene24522.t1 MTR_8g017540 61.111 72 28 0 5 76 92 163 4.95e-26 106
MS.gene24522.t1 MTR_8g017390 60.274 73 29 0 5 77 47 119 5.39e-26 107
MS.gene24522.t1 MTR_7g010210 64.384 73 26 0 3 75 44 116 5.65e-26 103
MS.gene24522.t1 MTR_8g017440 60.563 71 28 0 5 75 46 116 7.15e-26 105
MS.gene24522.t1 MTR_5g079290 58.108 74 31 0 5 78 51 124 1.68e-25 102
MS.gene24522.t1 MTR_7g035075 39.241 158 90 3 5 161 48 200 1.94e-25 100
MS.gene24522.t1 MTR_6g012690 63.380 71 26 0 5 75 46 116 1.94e-25 104
MS.gene24522.t1 MTR_2g034790 60.563 71 28 0 5 75 46 116 2.03e-25 103
MS.gene24522.t1 MTR_5g042030 58.108 74 31 0 3 76 39 112 3.21e-25 102
MS.gene24522.t1 MTR_7g017260 48.913 92 47 0 5 96 61 152 3.45e-25 102
MS.gene24522.t1 MTR_0140s0030 60.274 73 29 0 3 75 45 117 3.62e-25 103
MS.gene24522.t1 MTR_0489s0020 60.274 73 29 0 3 75 45 117 3.62e-25 103
MS.gene24522.t1 MTR_4g121460 59.155 71 29 0 5 75 46 116 4.18e-25 103
MS.gene24522.t1 MTR_8g017500 59.155 71 29 0 5 75 46 116 5.70e-25 102
MS.gene24522.t1 MTR_3g039990 61.644 73 28 0 3 75 45 117 6.18e-25 102
MS.gene24522.t1 MTR_0008s0280 59.420 69 28 0 5 73 46 114 6.82e-25 100
MS.gene24522.t1 MTR_6g055910 62.857 70 26 0 5 74 19 88 8.36e-25 100
MS.gene24522.t1 MTR_1g100667 53.659 82 38 0 5 86 47 128 9.78e-25 100
MS.gene24522.t1 MTR_5g010020 63.077 65 24 0 5 69 46 110 9.98e-25 102
MS.gene24522.t1 MTR_0001s0360 58.108 74 31 0 5 78 41 114 2.07e-24 99.4
MS.gene24522.t1 MTR_5g079220 58.108 74 31 0 5 78 55 128 2.14e-24 99.8
MS.gene24522.t1 MTR_7g087130 61.644 73 28 0 3 75 44 116 2.14e-24 101
MS.gene24522.t1 MTR_5g078910 58.333 72 30 0 5 76 41 112 2.55e-24 100
MS.gene24522.t1 MTR_6g055910 62.857 70 26 0 5 74 48 117 2.92e-24 99.8
MS.gene24522.t1 MTR_6g006030 59.155 71 29 0 5 75 48 118 6.06e-24 97.1
MS.gene24522.t1 MTR_1g086530 62.857 70 26 0 5 74 67 136 7.13e-24 98.6
MS.gene24522.t1 MTR_5g079120 56.579 76 33 0 3 78 93 168 7.47e-24 99.0
MS.gene24522.t1 MTR_1g021230 58.333 72 30 0 3 74 89 160 1.06e-23 100
MS.gene24522.t1 MTR_2g067420 63.077 65 24 0 5 69 48 112 1.15e-23 99.0
MS.gene24522.t1 MTR_4g063100 53.086 81 31 1 1 74 1 81 2.21e-23 95.9
MS.gene24522.t1 MTR_1g110460 60.000 70 28 0 5 74 60 129 2.32e-23 97.8
MS.gene24522.t1 MTR_5g078950 61.765 68 26 0 5 72 41 108 2.38e-23 96.7
MS.gene24522.t1 MTR_5g078860 55.263 76 34 0 3 78 39 114 2.66e-23 97.4
MS.gene24522.t1 MTR_8g060940 62.687 67 25 0 5 71 41 107 2.73e-23 96.3
MS.gene24522.t1 MTR_6g012180 62.687 67 25 0 3 69 44 110 3.67e-23 97.4
MS.gene24522.t1 MTR_3g045430 60.274 73 29 0 3 75 45 117 3.77e-23 97.1
MS.gene24522.t1 MTR_2g088170 65.714 70 24 0 5 74 63 132 4.46e-23 99.0
MS.gene24522.t1 MTR_4g063100 57.143 70 30 0 5 74 41 110 8.54e-23 95.1
MS.gene24522.t1 MTR_2g096380 53.750 80 37 0 5 84 21 100 1.07e-22 94.0
MS.gene24522.t1 MTR_2g096380 55.263 76 34 0 5 80 40 115 1.33e-22 94.0
MS.gene24522.t1 MTR_5g078800 56.944 72 31 0 5 76 41 112 1.41e-22 94.7
MS.gene24522.t1 MTR_1g086510 60.000 70 28 0 5 74 55 124 1.44e-22 94.7
MS.gene24522.t1 MTR_1g083630 56.944 72 31 0 3 74 44 115 1.70e-22 97.8
MS.gene24522.t1 MTR_5g078930 51.852 81 39 0 5 85 43 123 1.96e-22 93.2
MS.gene24522.t1 MTR_5g088080 58.571 70 28 1 5 73 46 115 3.52e-22 93.6
MS.gene24522.t1 MTR_5g088150 58.571 70 28 1 5 73 46 115 3.52e-22 93.6
MS.gene24522.t1 MTR_5g488210 58.571 70 28 1 5 73 46 115 3.52e-22 93.6
MS.gene24522.t1 MTR_5g088640 58.571 70 28 1 5 73 46 115 4.20e-22 93.6
MS.gene24522.t1 MTR_5g488170 58.571 70 28 1 5 73 46 115 4.36e-22 92.8
MS.gene24522.t1 MTR_0247s0040 57.143 70 30 0 3 72 39 108 5.78e-22 90.9
MS.gene24522.t1 MTR_4g128190 38.519 135 72 4 5 129 32 165 6.59e-22 92.4
MS.gene24522.t1 MTR_0193s0090 45.977 87 47 0 3 89 39 125 1.91e-21 90.5
MS.gene24522.t1 MTR_5g062790 57.143 70 29 1 5 73 43 112 3.17e-21 91.7
MS.gene24522.t1 MTR_7g109320 63.380 71 26 0 5 75 46 116 3.58e-21 92.4
MS.gene24522.t1 MTR_8g006470 57.143 70 29 1 5 73 44 113 7.60e-21 90.5
MS.gene24522.t1 MTR_4g094982 49.425 87 41 1 7 90 38 124 2.73e-20 88.6
MS.gene24522.t1 MTR_4g019370 40.187 107 63 1 7 112 71 177 3.10e-20 89.7
MS.gene24522.t1 MTR_4g029540 40.777 103 59 2 5 106 44 145 1.43e-19 87.0
MS.gene24522.t1 MTR_2g033170 62.319 69 26 0 5 73 58 126 2.10e-19 87.0
MS.gene24522.t1 MTR_5g088610 41.322 121 56 3 3 113 41 156 3.57e-19 86.7
MS.gene24522.t1 MTR_3g101290 52.941 68 32 0 7 74 70 137 5.86e-19 84.0
MS.gene24522.t1 MTR_5g016510 52.941 68 32 0 7 74 38 105 1.48e-18 84.7
MS.gene24522.t1 MTR_5g070020 43.529 85 46 1 7 91 155 237 2.56e-18 84.3
MS.gene24522.t1 MTR_4g123040 58.442 77 30 1 5 81 58 132 2.83e-18 83.6
MS.gene24522.t1 MTR_3g077650 40.860 93 48 1 7 99 214 299 1.08e-17 83.2
MS.gene24522.t1 MTR_7g451170 38.462 91 49 1 7 97 224 307 1.72e-17 82.4
MS.gene24522.t1 MTR_7g035350 42.683 82 46 1 7 88 258 338 7.70e-17 80.9
MS.gene24522.t1 MTR_4g105660 38.710 93 50 1 7 99 213 298 8.07e-17 80.5
MS.gene24522.t1 MTR_7g037260 41.860 86 41 1 7 92 178 254 8.20e-17 80.1
MS.gene24522.t1 MTR_3g463400 44.444 81 43 1 7 87 166 244 1.62e-16 79.7
MS.gene24522.t1 MTR_4g082040 33.333 132 69 3 7 138 138 250 2.13e-16 79.3
MS.gene24522.t1 MTR_5g082910 52.308 65 31 0 7 71 52 116 3.49e-16 77.4
MS.gene24522.t1 MTR_5g049190 50.820 61 30 0 7 67 52 112 8.94e-16 75.5
MS.gene24522.t1 MTR_1g057980 50.794 63 31 0 7 69 113 175 1.15e-15 76.3
MS.gene24522.t1 MTR_6g015455 50.000 68 34 0 7 74 38 105 1.33e-15 77.8
MS.gene24522.t1 MTR_5g041570 37.500 96 56 1 7 102 167 258 1.98e-15 76.6
MS.gene24522.t1 MTR_4g088015 37.363 91 50 1 7 97 254 337 2.04e-15 76.6
MS.gene24522.t1 MTR_6g074860 44.776 67 37 0 7 73 37 103 2.04e-15 74.7
MS.gene24522.t1 MTR_7g061550 33.974 156 82 5 1 147 37 180 6.26e-15 74.7
MS.gene24522.t1 MTR_5g010650 54.839 62 28 0 7 68 143 204 7.81e-15 74.7
MS.gene24522.t1 MTR_7g061330 49.275 69 35 0 7 75 146 214 9.12e-15 74.7
MS.gene24522.t1 MTR_7g461410 49.275 69 35 0 7 75 146 214 9.12e-15 74.7
MS.gene24522.t1 MTR_7g061330 49.275 69 35 0 7 75 110 178 1.10e-14 74.3
MS.gene24522.t1 MTR_7g450950 37.500 88 47 1 7 94 190 269 1.21e-14 73.6
MS.gene24522.t1 MTR_1g085880 52.778 72 33 1 3 73 44 115 2.38e-14 70.5
MS.gene24522.t1 MTR_6g027340 42.466 73 39 1 7 76 49 121 5.30e-14 69.7
MS.gene24522.t1 MTR_1g085770 52.778 72 33 1 3 73 44 115 5.46e-14 71.2
MS.gene24522.t1 MTR_3g110028 44.928 69 38 0 7 75 118 186 1.16e-13 71.6
MS.gene24522.t1 MTR_6g027360 42.466 73 39 1 7 76 111 183 1.80e-13 70.1
MS.gene24522.t1 MTR_1g026870 40.449 89 50 1 7 92 118 206 4.60e-13 70.1
MS.gene24522.t1 MTR_5g038910 33.884 121 70 2 7 127 59 169 1.28e-12 67.8
MS.gene24522.t1 MTR_7g086960 47.059 68 36 0 7 74 122 189 1.33e-12 67.8
MS.gene24522.t1 MTR_5g038910 33.884 121 70 2 7 127 59 169 1.52e-12 67.8
MS.gene24522.t1 MTR_6g027370 44.118 68 38 0 7 74 132 199 2.23e-12 67.0
MS.gene24522.t1 MTR_7g037130 39.535 86 43 2 7 92 178 254 2.29e-12 67.0
MS.gene24522.t1 MTR_3g089045 44.118 68 38 0 7 74 49 116 1.92e-11 63.9
MS.gene24522.t1 MTR_8g468380 41.176 68 40 0 7 74 55 122 3.00e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24522.t1 AT3G49690 53.125 160 63 3 5 163 47 195 2.57e-47 161
MS.gene24522.t1 AT5G65790 87.654 81 10 0 5 85 47 127 8.30e-47 161
MS.gene24522.t1 AT4G37780 85.366 82 12 0 5 86 47 128 7.31e-45 154
MS.gene24522.t1 AT5G57620 84.337 83 13 0 5 87 47 129 8.15e-45 155
MS.gene24522.t1 AT5G23000 84.722 72 11 0 5 76 47 118 5.44e-38 137
MS.gene24522.t1 AT2G36890 80.822 73 14 0 5 77 47 119 1.87e-37 135
MS.gene24522.t1 AT2G36890 80.822 73 14 0 5 77 88 160 2.47e-37 135
MS.gene24522.t1 AT5G56110 73.973 73 19 0 5 77 46 118 4.00e-33 124
MS.gene24522.t1 AT5G14750 48.819 127 58 1 3 129 48 167 1.01e-32 120
MS.gene24522.t1 AT5G61420 40.244 164 87 1 5 168 46 198 9.70e-32 121
MS.gene24522.t1 AT5G14750 47.967 123 57 1 7 129 18 133 2.24e-31 115
MS.gene24522.t1 AT1G22640 47.458 118 58 1 5 122 46 159 5.43e-31 117
MS.gene24522.t1 AT4G01680 70.423 71 21 0 5 75 46 116 3.72e-30 114
MS.gene24522.t1 AT1G57560 67.568 74 24 0 5 78 46 119 4.77e-30 115
MS.gene24522.t1 AT1G57560 67.568 74 24 0 5 78 46 119 4.78e-30 115
MS.gene24522.t1 AT2G16720 66.216 74 25 0 5 78 46 119 5.63e-30 114
MS.gene24522.t1 AT4G38620 57.303 89 32 1 5 87 46 134 5.78e-30 115
MS.gene24522.t1 AT4G09460 66.667 72 24 0 5 76 46 117 9.55e-30 113
MS.gene24522.t1 AT3G27920 61.039 77 30 0 3 79 46 122 1.07e-29 112
MS.gene24522.t1 AT4G01680 70.423 71 21 0 5 75 46 116 1.19e-29 115
MS.gene24522.t1 AT5G62320 58.427 89 31 1 5 87 54 142 1.28e-29 113
MS.gene24522.t1 AT5G26660 64.865 74 26 0 5 78 15 88 1.38e-29 114
MS.gene24522.t1 AT4G01680 70.423 71 21 0 5 75 58 128 1.64e-29 115
MS.gene24522.t1 AT4G34990 66.216 74 25 0 5 78 46 119 2.12e-29 113
MS.gene24522.t1 AT5G26660 64.865 74 26 0 5 78 46 119 5.69e-29 114
MS.gene24522.t1 AT5G65230 65.278 72 25 0 5 76 46 117 6.65e-29 112
MS.gene24522.t1 AT1G09540 67.606 71 23 0 5 75 46 116 8.25e-29 113
MS.gene24522.t1 AT3G13540 63.889 72 26 0 5 76 57 128 1.21e-28 110
MS.gene24522.t1 AT5G16770 66.667 72 24 0 5 76 46 117 1.32e-28 112
MS.gene24522.t1 AT5G16770 66.667 72 24 0 5 76 46 117 1.32e-28 112
MS.gene24522.t1 AT5G40330 61.538 78 29 1 3 79 44 121 1.32e-28 109
MS.gene24522.t1 AT1G35515 63.514 74 27 0 5 78 46 119 1.90e-28 108
MS.gene24522.t1 AT5G16770 66.667 72 24 0 5 76 46 117 2.14e-28 112
MS.gene24522.t1 AT5G16770 66.667 72 24 0 5 76 46 117 2.14e-28 112
MS.gene24522.t1 AT5G06100 65.278 72 25 0 3 74 64 135 2.67e-28 113
MS.gene24522.t1 AT5G07690 66.216 74 25 0 5 78 46 119 4.67e-28 110
MS.gene24522.t1 AT5G06100 65.278 72 25 0 3 74 64 135 5.27e-28 113
MS.gene24522.t1 AT5G06100 65.278 72 25 0 3 74 64 135 5.27e-28 113
MS.gene24522.t1 AT5G06100 65.278 72 25 0 3 74 64 135 5.27e-28 113
MS.gene24522.t1 AT5G06100 65.278 72 25 0 3 74 64 135 5.27e-28 113
MS.gene24522.t1 AT3G61250 63.889 72 26 0 5 76 46 117 6.39e-28 110
MS.gene24522.t1 AT5G07700 65.278 72 25 0 5 76 46 117 6.84e-28 110
MS.gene24522.t1 AT5G07700 65.278 72 25 0 5 76 46 117 6.84e-28 110
MS.gene24522.t1 AT4G21440 65.278 72 25 0 5 76 46 117 7.33e-28 110
MS.gene24522.t1 AT3G23250 64.789 71 25 0 5 75 46 116 7.76e-28 109
MS.gene24522.t1 AT4G05100 65.278 72 25 0 5 76 47 118 8.32e-28 110
MS.gene24522.t1 AT3G62610 61.039 77 30 0 5 81 46 122 8.64e-28 110
MS.gene24522.t1 AT3G13890 61.644 73 28 0 4 76 54 126 8.80e-28 110
MS.gene24522.t1 AT4G12350 65.278 72 25 0 5 76 46 117 8.96e-28 109
MS.gene24522.t1 AT5G10280 65.278 72 25 0 5 76 46 117 9.95e-28 110
MS.gene24522.t1 AT5G54230 66.667 72 24 0 5 76 46 117 1.05e-27 109
MS.gene24522.t1 AT4G26930 64.789 71 25 0 3 73 51 121 1.20e-27 110
MS.gene24522.t1 AT5G12870 63.380 71 26 0 5 75 52 122 1.29e-27 108
MS.gene24522.t1 AT1G63910 57.317 82 35 0 5 86 46 127 1.48e-27 110
MS.gene24522.t1 AT1G16490 49.558 113 54 1 5 117 48 157 1.49e-27 108
MS.gene24522.t1 AT5G55020 64.384 73 26 0 3 75 58 130 1.68e-27 112
MS.gene24522.t1 AT1G06180 59.756 82 31 1 5 86 46 125 2.38e-27 107
MS.gene24522.t1 AT3G12720 59.459 74 30 0 5 78 56 129 2.74e-27 108
MS.gene24522.t1 AT1G18570 64.865 74 26 0 5 78 47 120 2.76e-27 109
MS.gene24522.t1 AT3G11440 61.111 72 28 0 3 74 73 144 3.17e-27 110
MS.gene24522.t1 AT5G60890 66.197 71 24 0 5 75 46 116 3.32e-27 107
MS.gene24522.t1 AT3G02940 62.500 72 27 0 5 76 46 117 4.10e-27 107
MS.gene24522.t1 AT2G31180 64.789 71 25 0 5 75 46 116 4.40e-27 106
MS.gene24522.t1 AT4G28110 62.500 72 27 0 5 76 46 117 4.47e-27 107
MS.gene24522.t1 AT4G22680 62.500 72 27 0 5 76 46 117 5.98e-27 106
MS.gene24522.t1 AT4G17785 62.500 72 27 0 5 76 47 118 6.01e-27 108
MS.gene24522.t1 AT3G02940 62.500 72 27 0 5 76 46 117 6.60e-27 107
MS.gene24522.t1 AT3G02940 62.500 72 27 0 5 76 46 117 6.60e-27 107
MS.gene24522.t1 AT3G11440 61.111 72 28 0 3 74 73 144 6.63e-27 110
MS.gene24522.t1 AT3G11440 61.111 72 28 0 3 74 73 144 6.63e-27 110
MS.gene24522.t1 AT3G11440 61.111 72 28 0 3 74 73 144 6.63e-27 110
MS.gene24522.t1 AT4G17785 62.500 72 27 0 5 76 47 118 7.66e-27 108
MS.gene24522.t1 AT2G32460 62.857 70 26 0 5 74 52 121 8.90e-27 109
MS.gene24522.t1 AT5G35550 42.336 137 64 3 5 139 48 171 1.03e-26 105
MS.gene24522.t1 AT2G32460 62.857 70 26 0 5 74 40 109 1.08e-26 109
MS.gene24522.t1 AT5G35550 49.495 99 48 1 5 101 51 149 1.16e-26 105
MS.gene24522.t1 AT3G13890 61.111 72 28 0 5 76 46 117 1.40e-26 107
MS.gene24522.t1 AT3G47600 50.450 111 50 1 3 113 44 149 1.90e-26 106
MS.gene24522.t1 AT3G12820 61.111 72 28 0 7 78 2 73 2.00e-26 103
MS.gene24522.t1 AT3G28470 51.304 115 47 2 5 110 46 160 2.05e-26 106
MS.gene24522.t1 AT5G62470 64.384 73 26 0 3 75 44 116 2.22e-26 106
MS.gene24522.t1 AT1G79180 64.789 71 25 0 5 75 48 118 2.38e-26 105
MS.gene24522.t1 AT3G01140 62.500 72 27 0 5 76 46 117 2.40e-26 106
MS.gene24522.t1 AT3G27810 58.667 75 31 0 1 75 1 75 2.81e-26 102
MS.gene24522.t1 AT3G08500 64.789 71 25 0 5 75 64 134 3.09e-26 106
MS.gene24522.t1 AT5G15310 62.500 72 27 0 5 76 46 117 3.33e-26 103
MS.gene24522.t1 AT3G12820 60.811 74 29 0 5 78 48 121 3.71e-26 103
MS.gene24522.t1 AT3G47600 50.459 109 49 1 5 113 40 143 3.86e-26 105
MS.gene24522.t1 AT1G79180 64.789 71 25 0 5 75 81 151 4.36e-26 105
MS.gene24522.t1 AT1G34670 63.889 72 26 0 5 76 46 117 4.64e-26 106
MS.gene24522.t1 AT2G47460 61.972 71 27 0 5 75 46 116 4.78e-26 106
MS.gene24522.t1 AT5G15310 62.500 72 27 0 5 76 46 117 5.48e-26 105
MS.gene24522.t1 AT5G15310 62.500 72 27 0 5 76 46 117 5.91e-26 105
MS.gene24522.t1 AT3G01140 62.500 72 27 0 5 76 89 160 5.91e-26 106
MS.gene24522.t1 AT5G16600 50.495 101 38 1 2 90 43 143 6.35e-26 105
MS.gene24522.t1 AT5G52600 62.857 70 26 0 5 74 46 115 9.67e-26 101
MS.gene24522.t1 AT5G14340 61.972 71 27 0 5 75 58 128 1.08e-25 103
MS.gene24522.t1 AT3G28910 64.384 73 26 0 3 75 44 116 1.24e-25 104
MS.gene24522.t1 AT1G08810 45.299 117 63 1 3 119 44 159 1.69e-25 103
MS.gene24522.t1 AT3G01530 57.746 71 30 0 5 75 59 129 1.82e-25 101
MS.gene24522.t1 AT1G56160 61.972 71 27 0 5 75 48 118 1.96e-25 103
MS.gene24522.t1 AT1G74650 62.162 74 28 0 3 76 44 117 1.98e-25 103
MS.gene24522.t1 AT5G62470 65.217 69 24 0 7 75 47 115 3.95e-25 103
MS.gene24522.t1 AT1G66230 63.380 71 26 0 5 75 46 116 4.07e-25 102
MS.gene24522.t1 AT1G74430 59.459 74 30 0 5 78 46 119 5.95e-25 101
MS.gene24522.t1 AT2G26960 59.420 69 28 0 5 73 54 122 5.95e-25 103
MS.gene24522.t1 AT3G27810 60.563 71 28 0 5 75 54 124 1.05e-24 99.8
MS.gene24522.t1 AT1G74080 59.459 74 30 0 5 78 46 119 1.17e-24 101
MS.gene24522.t1 AT5G49330 60.563 71 28 0 5 75 46 116 1.84e-24 101
MS.gene24522.t1 AT5G40350 56.944 72 31 0 5 76 6 77 3.82e-24 96.7
MS.gene24522.t1 AT3G24310 55.814 86 36 1 5 90 52 135 3.95e-24 99.0
MS.gene24522.t1 AT4G13480 61.644 73 28 0 2 74 37 109 4.08e-24 99.0
MS.gene24522.t1 AT3G53200 62.857 70 26 0 5 74 10 79 6.63e-24 97.1
MS.gene24522.t1 AT5G52260 61.842 76 29 0 1 76 42 117 7.71e-24 98.2
MS.gene24522.t1 AT5G40350 56.944 72 31 0 5 76 51 122 7.97e-24 97.1
MS.gene24522.t1 AT1G66380 60.274 73 29 0 2 74 6 78 8.74e-24 93.6
MS.gene24522.t1 AT3G53200 50.495 101 33 2 1 94 39 129 9.04e-24 97.4
MS.gene24522.t1 AT1G66370 56.757 74 32 0 1 74 38 111 1.84e-23 96.7
MS.gene24522.t1 AT4G25560 61.111 72 28 0 5 76 44 115 2.43e-23 97.4
MS.gene24522.t1 AT3G30210 41.525 118 63 1 5 116 61 178 2.95e-23 97.1
MS.gene24522.t1 AT3G46130 55.263 76 34 0 5 80 11 86 3.07e-23 95.5
MS.gene24522.t1 AT5G59780 55.263 76 34 0 5 80 42 117 3.78e-23 95.5
MS.gene24522.t1 AT5G59780 55.263 76 34 0 5 80 21 96 3.92e-23 95.1
MS.gene24522.t1 AT2G47190 58.442 77 30 1 5 81 54 128 5.11e-23 96.3
MS.gene24522.t1 AT1G25340 60.000 70 28 0 5 74 52 121 5.66e-23 96.3
MS.gene24522.t1 AT3G46130 55.263 76 34 0 5 80 21 96 6.07e-23 95.1
MS.gene24522.t1 AT3G46130 55.263 76 34 0 5 80 43 118 6.74e-23 95.5
MS.gene24522.t1 AT3G48920 52.381 84 39 1 5 87 52 135 8.14e-23 95.5
MS.gene24522.t1 AT1G66380 61.429 70 27 0 5 74 42 111 1.20e-22 91.7
MS.gene24522.t1 AT1G48000 62.162 74 26 1 5 76 66 139 1.29e-22 94.4
MS.gene24522.t1 AT1G18710 54.930 71 32 0 5 75 46 116 1.54e-22 94.7
MS.gene24522.t1 AT1G68320 58.571 70 29 0 5 74 53 122 2.47e-22 94.7
MS.gene24522.t1 AT5G14750 43.363 113 57 1 17 129 1 106 2.99e-22 90.9
MS.gene24522.t1 AT5G14750 43.363 113 57 1 17 129 1 106 2.99e-22 90.9
MS.gene24522.t1 AT1G22640 42.453 106 57 1 17 122 1 102 3.50e-22 92.0
MS.gene24522.t1 AT1G56650 60.000 70 28 0 5 74 42 111 2.45e-21 90.9
MS.gene24522.t1 AT1G66390 60.000 70 28 0 5 74 42 111 3.15e-21 90.9
MS.gene24522.t1 AT1G25340 57.971 69 29 0 6 74 48 116 3.17e-21 91.3
MS.gene24522.t1 AT1G25340 57.971 69 29 0 6 74 48 116 4.99e-21 91.3
MS.gene24522.t1 AT2G26950 35.256 156 78 3 3 135 48 203 1.06e-20 91.7
MS.gene24522.t1 AT3G60460 55.714 70 30 1 5 73 45 114 3.15e-20 89.0
MS.gene24522.t1 AT5G49620 62.319 69 26 0 5 73 60 128 1.01e-19 87.8
MS.gene24522.t1 AT3G09230 37.500 128 68 3 7 133 88 204 1.15e-19 88.6
MS.gene24522.t1 AT1G71030 52.239 67 32 0 10 76 5 71 2.14e-19 84.3
MS.gene24522.t1 AT1G71030 52.239 67 32 0 10 76 19 85 2.60e-19 84.3
MS.gene24522.t1 AT2G39880 57.353 68 29 0 7 74 83 150 2.82e-19 87.4
MS.gene24522.t1 AT3G23250 59.322 59 24 0 17 75 1 59 4.94e-19 84.3
MS.gene24522.t1 AT2G23290 47.727 88 46 0 7 94 46 133 5.75e-19 85.5
MS.gene24522.t1 AT2G25230 55.556 63 28 0 7 69 59 121 6.83e-19 84.0
MS.gene24522.t1 AT3G06490 60.870 69 27 0 5 73 53 121 6.85e-19 85.5
MS.gene24522.t1 AT1G18960 46.479 71 36 1 5 75 41 109 2.47e-18 84.0
MS.gene24522.t1 AT3G27785 42.708 96 45 1 7 102 222 307 3.07e-18 84.7
MS.gene24522.t1 AT3G55730 55.882 68 30 0 7 74 89 156 3.35e-18 84.3
MS.gene24522.t1 AT5G40360 36.697 109 69 0 7 115 191 299 4.25e-18 84.0
MS.gene24522.t1 AT3G50060 52.113 71 34 0 7 77 39 109 4.28e-18 83.2
MS.gene24522.t1 AT5G67300 52.000 75 35 1 7 80 39 113 4.41e-18 83.2
MS.gene24522.t1 AT5G58850 45.455 77 41 1 7 82 138 214 4.88e-18 84.3
MS.gene24522.t1 AT4G37260 52.941 68 32 0 7 74 46 113 9.42e-18 82.4
MS.gene24522.t1 AT4G18770 47.826 69 36 0 7 75 250 318 2.40e-17 82.0
MS.gene24522.t1 AT5G49620 51.163 86 22 2 5 73 60 142 1.92e-16 78.6
MS.gene24522.t1 AT5G40430 50.794 63 31 0 7 69 86 148 6.67e-16 76.3
MS.gene24522.t1 AT5G17800 40.000 80 48 0 5 84 124 203 8.76e-16 76.6
MS.gene24522.t1 AT1G17950 38.889 90 51 1 7 96 38 123 1.95e-15 74.7
MS.gene24522.t1 AT3G09370 39.623 106 61 1 7 109 163 268 4.12e-15 75.9
MS.gene24522.t1 AT3G09370 39.623 106 61 1 7 109 168 273 4.19e-15 75.9
MS.gene24522.t1 AT1G69560 43.478 69 39 0 7 75 140 208 4.32e-15 74.7
MS.gene24522.t1 AT3G09370 39.623 106 61 1 7 109 176 281 4.82e-15 75.5
MS.gene24522.t1 AT1G69560 43.478 69 39 0 7 75 156 224 5.49e-15 74.7
MS.gene24522.t1 AT1G26780 44.118 68 38 0 7 74 131 198 6.06e-15 73.9
MS.gene24522.t1 AT1G26780 44.118 68 38 0 7 74 131 198 6.25e-15 74.7
MS.gene24522.t1 AT5G02320 47.826 69 36 0 7 75 160 228 6.66e-15 75.1
MS.gene24522.t1 AT5G02320 47.826 69 36 0 7 75 160 228 6.66e-15 75.1
MS.gene24522.t1 AT5G02320 47.826 69 36 0 7 75 100 168 7.27e-15 75.1
MS.gene24522.t1 AT3G29020 42.029 69 40 0 7 75 100 168 9.51e-15 73.6
MS.gene24522.t1 AT3G29020 42.029 69 40 0 7 75 98 166 1.41e-14 72.0
MS.gene24522.t1 AT5G11050 29.299 157 96 4 7 161 138 281 3.87e-14 72.8
MS.gene24522.t1 AT1G73410 47.059 68 36 0 7 74 39 106 4.74e-13 67.8
MS.gene24522.t1 AT4G33450 44.118 68 38 0 7 74 52 119 4.79e-13 68.2
MS.gene24522.t1 AT4G00540 44.928 69 38 0 7 75 139 207 8.51e-13 68.6
MS.gene24522.t1 AT5G11510 42.029 69 40 0 7 75 114 182 8.71e-13 69.3
MS.gene24522.t1 AT5G11510 42.029 69 40 0 7 75 114 182 8.71e-13 69.3
MS.gene24522.t1 AT5G11510 42.029 69 40 0 7 75 114 182 8.71e-13 69.3
MS.gene24522.t1 AT5G61420 32.558 129 76 1 40 168 2 119 1.04e-12 67.4
MS.gene24522.t1 AT5G11510 42.029 69 40 0 7 75 114 182 1.09e-12 68.9
MS.gene24522.t1 AT1G73410 47.059 68 36 0 7 74 39 106 1.09e-12 66.2
MS.gene24522.t1 AT5G11510 42.029 69 40 0 7 75 114 182 1.14e-12 68.9
MS.gene24522.t1 AT4G00540 44.928 69 38 0 7 75 137 205 1.28e-12 68.2
MS.gene24522.t1 AT2G37630 33.945 109 62 1 1 109 34 132 1.34e-12 67.8
MS.gene24522.t1 AT4G32730 42.029 69 40 0 7 75 120 188 1.47e-12 68.6
MS.gene24522.t1 AT4G32730 42.029 69 40 0 7 75 120 188 1.47e-12 68.6
MS.gene24522.t1 AT4G32730 42.029 69 40 0 7 75 120 188 1.47e-12 68.6
MS.gene24522.t1 AT4G32730 42.029 69 40 0 7 75 120 188 1.47e-12 68.6
MS.gene24522.t1 AT2G02820 42.466 73 40 1 7 79 63 133 1.54e-12 68.2
MS.gene24522.t1 AT4G32730 42.029 69 40 0 7 75 120 188 1.64e-12 68.2
MS.gene24522.t1 AT2G02820 42.466 73 40 1 7 79 63 133 1.75e-12 67.8
MS.gene24522.t1 AT2G02820 42.466 73 40 1 7 79 63 133 1.97e-12 67.0
MS.gene24522.t1 AT1G14350 42.466 73 40 1 7 79 58 128 2.91e-12 67.0
MS.gene24522.t1 AT1G14350 42.466 73 40 1 7 79 58 128 2.91e-12 67.0
MS.gene24522.t1 AT4G25560 56.250 48 21 0 29 76 2 49 5.52e-11 61.6

Find 56 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATTTAACCTTGGTATT+TGG 0.131923 1.3:+5380317 None:intergenic
TACAAGGTTCTAGTATTAAT+TGG 0.175164 1.3:-5380380 MS.gene24522:CDS
CTTGATCATTGAAGCCTTGT+TGG 0.313961 1.3:+5380757 None:intergenic
AACCACCATGTTTGAGATTA+GGG 0.322373 1.3:+5381413 None:intergenic
CAACCATCAAAAGTAGTATT+AGG 0.326180 1.3:+5380678 None:intergenic
CTTGTTGCTGCTGATCTTTA+CGG 0.335855 1.3:+5380961 None:intergenic
ACAAGGTTCTAGTATTAATT+GGG 0.336603 1.3:-5380379 MS.gene24522:CDS
AAACCACCATGTTTGAGATT+AGG 0.366318 1.3:+5381412 None:intergenic
AATTATCCACCAAGATTTGA+TGG 0.368986 1.3:-5380453 MS.gene24522:CDS
CATTCCAGAGATTGATCATA+TGG 0.369915 1.3:-5380484 MS.gene24522:CDS
ATAATGACATAAAGAACTAT+TGG 0.370430 1.3:-5381019 MS.gene24522:CDS
TTGGTTGTGGTTGTTATCAT+TGG 0.385791 1.3:+5380566 None:intergenic
GATAATGTTATCTTCTTCTT+CGG 0.391795 1.3:+5381387 None:intergenic
ATGTCATTATCAGTTCTTCC+TGG 0.397545 1.3:+5381032 None:intergenic
TTCTTGAACCAAATTTGATA+AGG 0.407035 1.3:+5380860 None:intergenic
TGCATGACATGTGGTAAATA+TGG 0.407502 1.3:+5380834 None:intergenic
AGAAAACTTCTTATGAAGCT+TGG 0.411643 1.3:-5380726 MS.gene24522:CDS
TGCAGCCTTTACATTAGTAT+TGG 0.421799 1.3:-5381364 MS.gene24522:CDS
GCTCGTAATAGAGGCAATAA+TGG 0.432154 1.3:-5380939 MS.gene24522:CDS
CAGCAACAAGCTCGTAATAG+AGG 0.461617 1.3:-5380948 MS.gene24522:CDS
AATTCCAACCCATCAAATCT+TGG 0.462721 1.3:+5380444 None:intergenic
TCCACCAAGATTTGATGGGT+TGG 0.464644 1.3:-5380448 MS.gene24522:CDS
CATTTGTTGCGAATTGTACT+TGG 0.466808 1.3:+5380547 None:intergenic
AACATTGATGGTAGTGGAGG+TGG 0.467582 1.3:+5380792 None:intergenic
CAAGTACAATTCGCAACAAA+TGG 0.468082 1.3:-5380546 MS.gene24522:CDS
TTGCGAATTGTACTTGGTTG+TGG 0.482944 1.3:+5380553 None:intergenic
AAACTTCTTATGAAGCTTGG+AGG 0.489488 1.3:-5380723 MS.gene24522:CDS
TTTACATTAGTATTGGAAGC+AGG 0.496580 1.3:-5381357 MS.gene24522:intron
GATACCATATGATCAATCTC+TGG 0.503391 1.3:+5380480 None:intergenic
TTTGTGTATGACAACATTGA+TGG 0.508144 1.3:+5380780 None:intergenic
TGCTTCCAATACTAATGTAA+AGG 0.512738 1.3:+5381359 None:intergenic
GTGGAAAGAGTTGTCGTCTC+CGG 0.522056 1.3:-5381453 MS.gene24522:CDS
CACAAATCACAATTTAACCT+TGG 0.527729 1.3:+5380310 None:intergenic
CATTGATGGTAGTGGAGGTG+GGG 0.533607 1.3:+5380794 None:intergenic
ACATTGATGGTAGTGGAGGT+GGG 0.534119 1.3:+5380793 None:intergenic
ATAATTGCAGCTCAATTGCC+AGG 0.552173 1.3:-5381050 MS.gene24522:CDS
ATTATCCACCAAGATTTGAT+GGG 0.556403 1.3:-5380452 MS.gene24522:CDS
TATGACAACATTGATGGTAG+TGG 0.558740 1.3:+5380786 None:intergenic
ATTGATGGTAGTGGAGGTGG+GGG 0.560501 1.3:+5380795 None:intergenic
GGCGAAGATAGTTTAGCCAC+CGG 0.569935 1.3:+5381434 None:intergenic
TAAAGAACTATTGGAATACA+AGG 0.580554 1.3:-5381010 MS.gene24522:CDS
AAGATGATGATAACTTGAAG+TGG 0.584448 1.3:+5380347 None:intergenic
CTTCTTGATTCCAAATACCA+AGG 0.584605 1.3:-5380327 MS.gene24522:CDS
TCCAACCCATCAAATCTTGG+TGG 0.591459 1.3:+5380447 None:intergenic
ATTGATAATAATAAGATACA+AGG 0.601954 1.3:-5380396 MS.gene24522:CDS
AGTTTATGATCAAGAACATG+TGG 0.602665 1.3:-5380613 MS.gene24522:CDS
GAAAGAGTTGTCGTCTCCGG+TGG 0.603936 1.3:-5381450 MS.gene24522:CDS
CTTCGCCCTAATCTCAAACA+TGG 0.609085 1.3:-5381418 MS.gene24522:CDS
GACTCGGTGCAAGAAGAGCA+AGG 0.613143 1.3:-5380513 MS.gene24522:CDS
CAAGGTTCTAGTATTAATTG+GGG 0.621220 1.3:-5380378 MS.gene24522:CDS
CGCCCTAATCTCAAACATGG+TGG 0.637157 1.3:-5381415 MS.gene24522:CDS
TTGTCATACACAAACCAACA+AGG 0.660089 1.3:-5380771 MS.gene24522:CDS
GTTTATGATCAAGAACATGT+GGG 0.665568 1.3:-5380612 MS.gene24522:CDS
AAATGGTCAATACTTTGACT+CGG 0.679619 1.3:-5380529 MS.gene24522:CDS
GACAACATTGATGGTAGTGG+AGG 0.681316 1.3:+5380789 None:intergenic
AGCAAAGGTTGCATGACATG+TGG 0.714384 1.3:+5380825 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAATTCAAACTAT+TGG + chr1.3:5380787-5380806 None:intergenic 10.0%
!!! AGATTAACCTAATTTTTTTT+TGG - chr1.3:5380448-5380467 MS.gene24522:CDS 15.0%
!!! ATTGATAATAATAAGATACA+AGG - chr1.3:5381550-5381569 MS.gene24522:intron 15.0%
!!! GATTAACCTAATTTTTTTTT+GGG - chr1.3:5380449-5380468 MS.gene24522:CDS 15.0%
!! ACAAAAAGTAACATATCATA+TGG + chr1.3:5380754-5380773 None:intergenic 20.0%
!! ATAATGACATAAAGAACTAT+TGG - chr1.3:5380927-5380946 MS.gene24522:CDS 20.0%
!! ATCTATAAAATCAAGACATA+AGG + chr1.3:5380710-5380729 None:intergenic 20.0%
!! GATGAATAACAAATTTATCA+AGG + chr1.3:5380357-5380376 None:intergenic 20.0%
!! TTTATCAAGGAAAAAAAGAA+AGG + chr1.3:5380344-5380363 None:intergenic 20.0%
!!! TGAATTTTCCTTATCAAATT+TGG - chr1.3:5381078-5381097 MS.gene24522:intron 20.0%
!!! TGATATGTTACTTTTTGTTT+TGG - chr1.3:5380756-5380775 MS.gene24522:CDS 20.0%
! AAACCACCCAAAAAAAAATT+AGG + chr1.3:5380458-5380477 None:intergenic 25.0%
! GATAATGTTATCTTCTTCTT+CGG + chr1.3:5380562-5380581 None:intergenic 25.0%
! TAAAGAACTATTGGAATACA+AGG - chr1.3:5380936-5380955 MS.gene24522:CDS 25.0%
! TTCTTGAACCAAATTTGATA+AGG + chr1.3:5381089-5381108 None:intergenic 25.0%
!! ACAAGGTTCTAGTATTAATT+GGG - chr1.3:5381567-5381586 MS.gene24522:intron 25.0%
!! TACAAGGTTCTAGTATTAAT+TGG - chr1.3:5381566-5381585 MS.gene24522:intron 25.0%
!!! ATTTTTTTTTGGGTGGTTTT+AGG - chr1.3:5380459-5380478 MS.gene24522:CDS 25.0%
!!! TAACCTAATTTTTTTTTGGG+TGG - chr1.3:5380452-5380471 MS.gene24522:CDS 25.0%
AAATGGTCAATACTTTGACT+CGG - chr1.3:5381417-5381436 MS.gene24522:CDS 30.0%
AAGATGATGATAACTTGAAG+TGG + chr1.3:5381602-5381621 None:intergenic 30.0%
AATTATCCACCAAGATTTGA+TGG - chr1.3:5381493-5381512 MS.gene24522:intron 30.0%
AGAAAACTTCTTATGAAGCT+TGG - chr1.3:5381220-5381239 MS.gene24522:intron 30.0%
AGTTTATGATCAAGAACATG+TGG - chr1.3:5381333-5381352 MS.gene24522:intron 30.0%
ATTATCCACCAAGATTTGAT+GGG - chr1.3:5381494-5381513 MS.gene24522:intron 30.0%
CAAATGAAGTGAAGATATAG+TGG + chr1.3:5380379-5380398 None:intergenic 30.0%
CAACCATCAAAAGTAGTATT+AGG + chr1.3:5381271-5381290 None:intergenic 30.0%
CTTTCATACCAAACCAAAAA+GGG + chr1.3:5380866-5380885 None:intergenic 30.0%
GTTTATGATCAAGAACATGT+GGG - chr1.3:5381334-5381353 MS.gene24522:intron 30.0%
TGCTTCCAATACTAATGTAA+AGG + chr1.3:5380590-5380609 None:intergenic 30.0%
TTTGTGTATGACAACATTGA+TGG + chr1.3:5381169-5381188 None:intergenic 30.0%
! AAGGTTGAAAAAGAAGCTTT+TGG - chr1.3:5380955-5380974 MS.gene24522:CDS 30.0%
! AGGTTGAAAAAGAAGCTTTT+GGG - chr1.3:5380956-5380975 MS.gene24522:CDS 30.0%
! CAAGGTTCTAGTATTAATTG+GGG - chr1.3:5381568-5381587 MS.gene24522:intron 30.0%
! TTTACATTAGTATTGGAAGC+AGG - chr1.3:5380589-5380608 MS.gene24522:CDS 30.0%
!! CATCCTAATACTACTTTTGA+TGG - chr1.3:5381265-5381284 MS.gene24522:intron 30.0%
AAACTTCTTATGAAGCTTGG+AGG - chr1.3:5381223-5381242 MS.gene24522:intron 35.0%
AATTCCAACCCATCAAATCT+TGG + chr1.3:5381505-5381524 None:intergenic 35.0%
ATGTCATTATCAGTTCTTCC+TGG + chr1.3:5380917-5380936 None:intergenic 35.0%
CAAGTACAATTCGCAACAAA+TGG - chr1.3:5381400-5381419 MS.gene24522:CDS 35.0%
CATTCCAGAGATTGATCATA+TGG - chr1.3:5381462-5381481 MS.gene24522:CDS 35.0%
CTTCTTGATTCCAAATACCA+AGG - chr1.3:5381619-5381638 MS.gene24522:intron 35.0%
GATACCATATGATCAATCTC+TGG + chr1.3:5381469-5381488 None:intergenic 35.0%
GCTTTCATACCAAACCAAAA+AGG + chr1.3:5380867-5380886 None:intergenic 35.0%
TGCAGCCTTTACATTAGTAT+TGG - chr1.3:5380582-5380601 MS.gene24522:CDS 35.0%
TGCATGACATGTGGTAAATA+TGG + chr1.3:5381115-5381134 None:intergenic 35.0%
TTGGTTGTGGTTGTTATCAT+TGG + chr1.3:5381383-5381402 None:intergenic 35.0%
TTGTCATACACAAACCAACA+AGG - chr1.3:5381175-5381194 MS.gene24522:intron 35.0%
! AAACCACCATGTTTGAGATT+AGG + chr1.3:5380537-5380556 None:intergenic 35.0%
! AACCACCATGTTTGAGATTA+GGG + chr1.3:5380536-5380555 None:intergenic 35.0%
! CATTTGTTGCGAATTGTACT+TGG + chr1.3:5381402-5381421 None:intergenic 35.0%
! GGTTGAAAAAGAAGCTTTTG+GGG - chr1.3:5380957-5380976 MS.gene24522:CDS 35.0%
! TATGACAACATTGATGGTAG+TGG + chr1.3:5381163-5381182 None:intergenic 35.0%
! TGAAAAGTGAAGACCCTTTT+TGG - chr1.3:5380850-5380869 MS.gene24522:CDS 35.0%
!!! GATGGGTTGGAATTCTTTTA+TGG - chr1.3:5381511-5381530 MS.gene24522:intron 35.0%
!!! TTTTGGTTTGGTATGAAAGC+AGG - chr1.3:5380867-5380886 MS.gene24522:CDS 35.0%
ATAATTGCAGCTCAATTGCC+AGG - chr1.3:5380896-5380915 MS.gene24522:CDS 40.0%
CTTGTTGCTGCTGATCTTTA+CGG + chr1.3:5380988-5381007 None:intergenic 40.0%
GCTCGTAATAGAGGCAATAA+TGG - chr1.3:5381007-5381026 MS.gene24522:CDS 40.0%
TTGCGAATTGTACTTGGTTG+TGG + chr1.3:5381396-5381415 None:intergenic 40.0%
! AAGCTTGGAGGAAGATTTTC+AGG - chr1.3:5381235-5381254 MS.gene24522:intron 40.0%
! CTTGATCATTGAAGCCTTGT+TGG + chr1.3:5381192-5381211 None:intergenic 40.0%
!!! AGTGAAGACCCTTTTTGGTT+TGG - chr1.3:5380855-5380874 MS.gene24522:CDS 40.0%
AGCAAAGGTTGCATGACATG+TGG + chr1.3:5381124-5381143 None:intergenic 45.0%
CAGCAACAAGCTCGTAATAG+AGG - chr1.3:5380998-5381017 MS.gene24522:CDS 45.0%
CTTCGCCCTAATCTCAAACA+TGG - chr1.3:5380528-5380547 MS.gene24522:CDS 45.0%
TCCAACCCATCAAATCTTGG+TGG + chr1.3:5381502-5381521 None:intergenic 45.0%
! TCCACCAAGATTTGATGGGT+TGG - chr1.3:5381498-5381517 MS.gene24522:intron 45.0%
!! AACATTGATGGTAGTGGAGG+TGG + chr1.3:5381157-5381176 None:intergenic 45.0%
!! ACATTGATGGTAGTGGAGGT+GGG + chr1.3:5381156-5381175 None:intergenic 45.0%
!! GACAACATTGATGGTAGTGG+AGG + chr1.3:5381160-5381179 None:intergenic 45.0%
!! TGGTTTGGTATGAAAGCAGG+TGG - chr1.3:5380870-5380889 MS.gene24522:CDS 45.0%
!!! GTTTTAGGCTTGAAGCGTTG+TGG - chr1.3:5380474-5380493 MS.gene24522:CDS 45.0%
CGCCCTAATCTCAAACATGG+TGG - chr1.3:5380531-5380550 MS.gene24522:CDS 50.0%
GGCGAAGATAGTTTAGCCAC+CGG + chr1.3:5380515-5380534 None:intergenic 50.0%
GTGGAAAGAGTTGTCGTCTC+CGG - chr1.3:5380493-5380512 MS.gene24522:CDS 50.0%
!! ATTGATGGTAGTGGAGGTGG+GGG + chr1.3:5381154-5381173 None:intergenic 50.0%
!! CATTGATGGTAGTGGAGGTG+GGG + chr1.3:5381155-5381174 None:intergenic 50.0%
GAAAGAGTTGTCGTCTCCGG+TGG - chr1.3:5380496-5380515 MS.gene24522:CDS 55.0%
!! GACTCGGTGCAAGAAGAGCA+AGG - chr1.3:5381433-5381452 MS.gene24522:CDS 55.0%
!! GGTGGGGGTGTTGATAGCAA+AGG + chr1.3:5381139-5381158 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 5380323 5381645 5380323 ID=MS.gene24522
chr1.3 mRNA 5380323 5381645 5380323 ID=MS.gene24522.t1;Parent=MS.gene24522
chr1.3 exon 5381636 5381645 5381636 ID=MS.gene24522.t1.exon1;Parent=MS.gene24522.t1
chr1.3 CDS 5381636 5381645 5381636 ID=cds.MS.gene24522.t1;Parent=MS.gene24522.t1
chr1.3 exon 5381358 5381487 5381358 ID=MS.gene24522.t1.exon2;Parent=MS.gene24522.t1
chr1.3 CDS 5381358 5381487 5381358 ID=cds.MS.gene24522.t1;Parent=MS.gene24522.t1
chr1.3 exon 5380323 5381079 5380323 ID=MS.gene24522.t1.exon3;Parent=MS.gene24522.t1
chr1.3 CDS 5380323 5381079 5380323 ID=cds.MS.gene24522.t1;Parent=MS.gene24522.t1
Gene Sequence

>MS.gene24522

ATGTTTACATGTATGTATCCTTTCTTTTTTTCCTTGATAAATTTGTTATTCATCCACTATATCTTCACTTCATTTGATATAATAGCTATAAAGCTTATGATTCATCTAACTTTTTTTTTTTTTTAAGATTAACCTAATTTTTTTTTGGGTGGTTTTAGGCTTGAAGCGTTGTGGAAAGAGTTGTCGTCTCCGGTGGCTAAACTATCTTCGCCCTAATCTCAAACATGGTGGTTTTTCCGAAGAAGAAGATAACATTATCTGCAGCCTTTACATTAGTATTGGAAGCAGGTACATATACATATGCTTAGTTTCTTGCATAACATAATTGATCATTTGCAACTGCAATTCAAGCTGCATAGATTAAGAATCAAGATGTAATTGTAACCTTATGTCTTGATTTTATAGATACACTACAATTTATATTATAACCATATGATATGTTACTTTTTGTTTTGGTGCAACCAATAGTTTGAATTTTTTTTAACTATCTATATATATAATTATTATATATATAGTATATATAGATGTGAAAAGTGAAGACCCTTTTTGGTTTGGTATGAAAGCAGGTGGTCGATAATTGCAGCTCAATTGCCAGGAAGAACTGATAATGACATAAAGAACTATTGGAATACAAGGTTGAAAAAGAAGCTTTTGGGGAAACACCGTAAAGATCAGCAGCAACAAGCTCGTAATAGAGGCAATAATGGTGTTATTATTAAGCAAGAAAGCAATAACAATAGAGTGATGAGTAGTAGTGAATTTTCCTTATCAAATTTGGTTCAAGAACAACCATATTTACCACATGTCATGCAACCTTTGCTATCAACACCCCCACCTCCACTACCATCAATGTTGTCATACACAAACCAACAAGGCTTCAATGATCAAGATTCTATTAGAAAACTTCTTATGAAGCTTGGAGGAAGATTTTCAGGTGATTATCATCCTAATACTACTTTTGATGGTTGTAATCTTCAATTTTCAAATGCTACTTCTTCAACTCATGAACAAGTTTATGATCAAGAACATGTGGGTTCTTCTACTTGTGTTAATTCTTCCAATGATAACAACCACAACCAAGTACAATTCGCAACAAATGGTCAATACTTTGACTCGGTGCAAGAAGAGCAAGGTAAATTCATTCCAGAGATTGATCATATGGTATCTACTAATTATCCACCAAGATTTGATGGGTTGGAATTCTTTTATGGTGAAGAAGACTTGAATATTGATAATAATAAGATACAAGGTTCTAGTATTAATTGGGGTGAAGCTACCACTTCAAGTTATCATCATCTTCTTGATTCCAAATACCAAGGTTAA

Protein sequence

>MS.gene24522.t1

MFTCLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKDQQQQARNRGNNGVIIKQESNNNRVMSSSEFSLSNLVQEQPYLPHVMQPLLSTPPPPLPSMLSYTNQQGFNDQDSIRKLLMKLGGRFSGDYHPNTTFDGCNLQFSNATSSTHEQVYDQEHVGSSTCVNSSNDNNHNQVQFATNGQYFDSVQEEQGKFIPEIDHMVSTNYPPRFDGLEFFYGEEDLNIDNNKIQGSSINWGEATTSSYHHLLDSKYQG