AlfalfaGEDB | MS.gene95596

M. sativa cultivar XinJiangDaYe / MS.gene95596

KEGG: K23978
GO: -
PFAM: PF13472.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95596.t1	XP_013449138.1	86.1	280	39	0	1	280	1	280	1.10E-141	512.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95596.t1	Q9SRM5	59.0	251	101	2	31	279	5	255	5.9e-88	325.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95596.t1	A0A072UBE2	86.1	280	39	0	1	280	1	280	7.8e-142	512.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene95596	-0.831802	1.36E-55	-1.69E-46
MS.gene049222	MS.gene95596	-0.806061	9.88E-50	-1.69E-46
MS.gene049285	MS.gene95596	-0.805677	1.19E-49	-1.69E-46
MS.gene04932	MS.gene95596	0.828389	9.24E-55	-1.69E-46
MS.gene049320	MS.gene95596	-0.821803	3.32E-53	-1.69E-46
MS.gene049549	MS.gene95596	0.812939	3.29E-51	-1.69E-46
MS.gene049611	MS.gene95596	0.828111	1.08E-54	-1.69E-46
MS.gene049633	MS.gene95596	-0.808738	2.67E-50	-1.69E-46
MS.gene049634	MS.gene95596	0.811588	6.49E-51	-1.69E-46
MS.gene050170	MS.gene95596	-0.82572	4.02E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95596.t1	MTR_7g068500	86.071	280	39	0	1	280	1	280	0.0	509
MS.gene95596.t1	MTR_7g068460	85.393	267	39	0	14	280	15	281	2.05e-174	483
MS.gene95596.t1	MTR_7g068470	87.149	249	31	1	32	280	2	249	1.27e-163	454
MS.gene95596.t1	MTR_7g068470	85.944	249	30	2	32	280	2	245	1.80e-159	443
MS.gene95596.t1	MTR_4g016510	67.600	250	79	2	32	279	6	255	6.40e-125	357
MS.gene95596.t1	MTR_7g068530	68.400	250	76	3	31	279	5	252	1.10e-123	353
MS.gene95596.t1	MTR_7g068450	66.008	253	81	3	32	279	2	254	5.87e-120	344
MS.gene95596.t1	MTR_3g070460	58.893	253	102	2	29	279	3	255	6.84e-111	321
MS.gene95596.t1	MTR_7g068550	61.506	239	90	2	32	269	6	243	5.96e-106	308
MS.gene95596.t1	MTR_7g068520	52.610	249	21	2	32	280	3	154	1.02e-77	233

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95596.t1	AT3G11210	58.964	251	101	2	31	279	5	255	1.52e-111	322
MS.gene95596.t1	AT2G38180	60.262	229	81	4	32	257	6	227	3.50e-99	293
MS.gene95596.t1	AT5G45920	39.713	209	119	4	32	233	3	211	1.02e-46	157
MS.gene95596.t1	AT5G45920	39.713	209	119	4	32	233	3	211	1.02e-46	157
MS.gene95596.t1	AT5G62930	34.914	232	140	4	32	256	2	229	4.05e-46	155
MS.gene95596.t1	AT5G62930	34.599	237	144	4	27	256	23	255	7.03e-46	155
MS.gene95596.t1	AT5G45920	40.000	185	104	4	32	209	3	187	5.57e-40	138
MS.gene95596.t1	AT5G45920	40.000	185	104	4	32	209	3	187	5.57e-40	138
MS.gene95596.t1	AT5G62930	30.682	176	107	5	94	263	7	173	4.34e-25	99.0

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Find 61 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAAGGCCATTGATATG+TGG	0.571676	7.4:+35123541	MS.gene95596:CDS
AAGGCGTGCTGTGCAAGTTT+TGG	0.302736	7.4:+35122570	MS.gene95596:CDS
AAGGTTGGGGAGCAATTAAG+AGG	0.474474	7.4:+35122252	MS.gene95596:intron
AAGTACACAATGACCAATGA+TGG	0.528971	7.4:-35122855	None:intergenic
AAGTTAATGCCAGCTGAATT+TGG	0.274855	7.4:+35123798	MS.gene95596:CDS
AATACAGTTGCTATGAAGGT+TGG	0.465220	7.4:+35122345	MS.gene95596:CDS
AATATATTCAGAAGCGTGTT+TGG	0.360952	7.4:+35123500	MS.gene95596:CDS
AATGAGCTCAGTGATGAATT+TGG	0.285385	7.4:+35123447	MS.gene95596:intron
AATTGCAGACCACATATCAA+TGG	0.566695	7.4:-35123550	None:intergenic
ACATGAGGACCAAGGCCACT+TGG	0.533170	7.4:-35122906	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAAGGCCATTGATATG+TGG	+	chr7.4:35123541-35123560	MS.gene95596:CDS	30.0%
AATCATATTATGGTGAAGGT+TGG	+	chr7.4:35122237-35122256	MS.gene95596:intron	30.0%
ACTTATGTATATGCTGCAAA+TGG	-	chr7.4:35122698-35122717	None:intergenic	30.0%
AGAAGATTCACCTTATGATA+TGG	+	chr7.4:35123821-35123840	MS.gene95596:CDS	30.0%
ATCATATTATGGTGAAGGTT+GGG	+	chr7.4:35122238-35122257	MS.gene95596:intron	30.0%
ATGATATGGTTTCTCTTGAT+GGG	+	chr7.4:35123835-35123854	MS.gene95596:CDS	30.0%
GAAGATTGCTACTCATATAA+TGG	+	chr7.4:35122959-35122978	MS.gene95596:CDS	30.0%
TATGATATGGTTTCTCTTGA+TGG	+	chr7.4:35123834-35123853	MS.gene95596:CDS	30.0%
TCAAGAGAAACCATATCATA+AGG	-	chr7.4:35123834-35123853	None:intergenic	30.0%
AAGTACACAATGACCAATGA+TGG	-	chr7.4:35122858-35122877	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	35122144	35123914	35122144	ID=MS.gene95596
chr7.4	mRNA	35122144	35123914	35122144	ID=MS.gene95596.t1;Parent=MS.gene95596
chr7.4	exon	35122144	35122183	35122144	ID=MS.gene95596.t1.exon1;Parent=MS.gene95596.t1
chr7.4	CDS	35122144	35122183	35122144	ID=cds.MS.gene95596.t1;Parent=MS.gene95596.t1
chr7.4	exon	35122255	35122400	35122255	ID=MS.gene95596.t1.exon2;Parent=MS.gene95596.t1
chr7.4	CDS	35122255	35122400	35122255	ID=cds.MS.gene95596.t1;Parent=MS.gene95596.t1
chr7.4	exon	35122532	35122609	35122532	ID=MS.gene95596.t1.exon3;Parent=MS.gene95596.t1
chr7.4	CDS	35122532	35122609	35122532	ID=cds.MS.gene95596.t1;Parent=MS.gene95596.t1
chr7.4	exon	35122840	35122980	35122840	ID=MS.gene95596.t1.exon4;Parent=MS.gene95596.t1
chr7.4	CDS	35122840	35122980	35122840	ID=cds.MS.gene95596.t1;Parent=MS.gene95596.t1
chr7.4	exon	35123281	35123354	35123281	ID=MS.gene95596.t1.exon5;Parent=MS.gene95596.t1
chr7.4	CDS	35123281	35123354	35123281	ID=cds.MS.gene95596.t1;Parent=MS.gene95596.t1
chr7.4	exon	35123458	35123607	35123458	ID=MS.gene95596.t1.exon6;Parent=MS.gene95596.t1
chr7.4	CDS	35123458	35123607	35123458	ID=cds.MS.gene95596.t1;Parent=MS.gene95596.t1
chr7.4	exon	35123701	35123914	35123701	ID=MS.gene95596.t1.exon7;Parent=MS.gene95596.t1
chr7.4	CDS	35123701	35123914	35123701	ID=cds.MS.gene95596.t1;Parent=MS.gene95596.t1

Gene Sequence

>MS.gene95596

ATGGGATGCATATTATCTACCTTTCAATCCTCTCTCTCTGGTAACTTTCTCTCTATCTATCTTGAACAATCATTCTCTTCCATTTTTCAATACAATCATATTATGGTGAAGGTTGGGGAGCAATTAAGAGGGTTCTTCCATTGCACAGTGGGGGAGCTATATCGAGGCCTAAAATTGTGTTGTTTGGTTCTTCAATTGTTCAATACAGTTGCTATGAAGGTTGGGGAGCTACTCTTTCTCACTTGTACGCTCGTAAGGTATTATTATTTCTTCCTCTAATTATTAATACCGTAATGTTTTATTGGTTCTGTACCTGGCATATATTATGCATTGTCCATACCAACTAAGTTAAGCTCACGAGGACAGACCTAACATTGATTTCATGTAGGCTGATATAGTTTTGCGGGGATATGCTGCTTGGAATTCAAGGCGTGCTGTGCAAGTTTTGGATAAAATTTTTCCTAAGGTATTGAATATAATGACTGATGAAGGCATCTTTTGATCCAAAAAATTTCCTAAGGCATATTTTACCCTCAACTTAAGTAATACCACCATTTGCAGCATATACATAAGTTTTTATGTTGACAAATACATTATGTTGCAGCATTTACATTTAGTTGTCCATGATGTGATTATTTTGATTTTGTTGACAAATACTCACCTCTGATACTCTTATACTGGTCATCTCTAATACAGAATGCCATTGAGCAACCATCATTGGTCATTGTGTACTTTGGTGGTAATGATTGTATTCGTCCATATCCAAGTGGCCTTGGTCCTCATGTACCATTGCAGGAATACATACAAAATATGAGGAAGATTGCTACTCATATAATGGTAAAAGAGTATTGTTATTTTGATTTCAAATTTCGGTCATATATGTAAAGTTTAACACAATTGAAATACGTGGTTAACTATGTTCATTTAATAATTAAGTTTCATACTAAAGAGCCTGAATTATTAAGTTTCATACTTCATGAAATTCTTGTGTTCTTTGTGTATAAAATTTAGTTTTCATCTCATATTTATGAATGTTAATTTAATTATTTCCATTTATTATCAATAATTACTTTTTGTTTTTGCTGTTCAAAAAAATTTATGAATGTTAATTTTGACATAATTCTTAATGATTGACAGAGCCTGTCACATAAGACTCGGATTATATTTCTCAGTAGTCCTCCGATCAACGAGGCACAAATTAGGATCAACATGTAATAACCTTTGTTCCCTTAACAAATGTATAATCTTTGACATTCTCGTTTCCTAATTATTCTATGATATATCTATAATAACAAATTGTTTGAATGAGCTCAGTGATGAATTTGGGCAACAAATAAGAACAAATGAAATAAGTCGAATATATTCAGAAGCGTGTTTGGATATGTGTCGTGAGATGAAAATAAAGGCCATTGATATGTGGTCTGCAATTCAGAAGAGAGATGATTGGAGAGATGTTTGTTTCATGTAAGTATGGTCTCATATGTATGCACCTAAACTAAAATGTTTTAAATTTGTTTATCAATAATAATTTAATTACGTGGTTTGATTATTTCTTAGTGATGGAGTTCATCTATCAACTGAGGGGAGTGAAATATTAACAAAGGAGATATTGAATGTCATAAAAGAAGCAGAGTGGGAACCAAGTCTATATTGGAAGTTAATGCCAGCTGAATTTGGAGAAGATTCACCTTATGATATGGTTTCTCTTGATGGGAAGACAAATATTAATTACTCCAATGTGCCTTTTCCTCAAGATGTAGAGTGGCCTTGA

Protein sequence

>MS.gene95596.t1

MGCILSTFQSSLSGWGAIKRVLPLHSGGAISRPKIVLFGSSIVQYSCYEGWGATLSHLYARKADIVLRGYAAWNSRRAVQVLDKIFPKNAIEQPSLVIVYFGGNDCIRPYPSGLGPHVPLQEYIQNMRKIATHIMSLSHKTRIIFLSSPPINEAQIRINIDEFGQQIRTNEISRIYSEACLDMCREMKIKAIDMWSAIQKRDDWRDVCFIDGVHLSTEGSEILTKEILNVIKEAEWEPSLYWKLMPAEFGEDSPYDMVSLDGKTNINYSNVPFPQDVEWP