AlfalfaGEDB | MS.gene38127

M. sativa cultivar XinJiangDaYe / MS.gene38127

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38127.t1	XP_003618057.1	92.7	96	7	0	1	96	1	96	1.00E-39	172.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38127.t1	G7K0N1	92.7	96	7	0	1	96	1	96	7.4e-40	172.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene38127	0.836757	7.76E-57	-1.69E-46
MS.gene049171	MS.gene38127	0.914051	3.01E-84	-1.69E-46
MS.gene049173	MS.gene38127	0.8626	4.52E-64	-1.69E-46
MS.gene049217	MS.gene38127	0.866542	2.64E-65	-1.69E-46
MS.gene049222	MS.gene38127	0.882948	6.79E-71	-1.69E-46
MS.gene049285	MS.gene38127	0.907524	4.62E-81	-1.69E-46
MS.gene049320	MS.gene38127	0.893245	7.52E-75	-1.69E-46
MS.gene04939	MS.gene38127	0.842154	3.08E-58	-1.69E-46
MS.gene049427	MS.gene38127	0.822181	2.72E-53	-1.69E-46
MS.gene049609	MS.gene38127	0.863464	2.44E-64	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38127.t1	MTR_5g098530	92.708	96	7	0	1	96	1	96	1.26e-52	162

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38127.t1	AT4G13500	73.214	56	15	0	41	96	48	103	2.46e-24	91.3
MS.gene38127.t1	AT2G05310	71.429	56	16	0	41	96	48	103	3.48e-24	90.9

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Find 24 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGTTACTTTGGCTATGG+TGG	0.517669	5.1:+79173708	None:intergenic
AATAAGATAATATAAGGAAG+TGG	0.555321	5.1:+79173237	None:intergenic
AGAAGATAGAAGAGTTACTT+TGG	0.480230	5.1:+79173699	None:intergenic
AGCACAAACTTTGATACCAA+GGG	0.547969	5.1:+79173600	None:intergenic
AGCGACTAAGGTGTAGATCA+AGG	0.555002	5.1:+79171997	None:intergenic
ATACCAAATAAGATAATATA+AGG	0.355873	5.1:+79173231	None:intergenic
ATCAAAGTTTGTGCTCAATT+AGG	0.317774	5.1:-79173592	MS.gene38127:intron
ATCTACACCTTAGTCGCTTG+CGG	0.523454	5.1:-79171992	MS.gene38127:CDS
CAGTCAGCAGGAGAGAGAGA+AGG	0.609827	5.1:-79173279	MS.gene38127:CDS
CGAGATGAAGAAACCAAGAA+AGG	0.593391	5.1:-79173434	MS.gene38127:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGATAGAAGAGTTACTT+TGG	+	chr5.1:79171908-79171927	None:intergenic	30.0%
ATCAAAGTTTGTGCTCAATT+AGG	-	chr5.1:79172012-79172031	MS.gene38127:intron	30.0%
ATTTGTGATGCTACAGATAT+TGG	-	chr5.1:79172302-79172321	MS.gene38127:intron	30.0%
GCGAAGAAGAATATGTAATA+AGG	+	chr5.1:79173470-79173489	None:intergenic	30.0%
TAGATGGATAACTAACAAGT+GGG	+	chr5.1:79172837-79172856	None:intergenic	30.0%
TCTCAATCCTAAAGAAATCA+GGG	-	chr5.1:79173137-79173156	MS.gene38127:intron	30.0%
TGAGAAAGTGAAGATGATTT+AGG	+	chr5.1:79171958-79171977	None:intergenic	30.0%
TTCTCAATCCTAAAGAAATC+AGG	-	chr5.1:79173136-79173155	MS.gene38127:intron	30.0%
AAAATCCATGGATGCAGAAT+TGG	+	chr5.1:79172940-79172959	None:intergenic	35.0%
AAATCCATGGATGCAGAATT+GGG	+	chr5.1:79172939-79172958	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	79171892	79173734	79171892	ID=MS.gene38127
chr5.1	mRNA	79171892	79173734	79171892	ID=MS.gene38127.t1;Parent=MS.gene38127
chr5.1	exon	79173593	79173734	79173593	ID=MS.gene38127.t1.exon1;Parent=MS.gene38127.t1
chr5.1	CDS	79173593	79173734	79173593	ID=cds.MS.gene38127.t1;Parent=MS.gene38127.t1
chr5.1	exon	79173392	79173461	79173392	ID=MS.gene38127.t1.exon2;Parent=MS.gene38127.t1
chr5.1	CDS	79173392	79173461	79173392	ID=cds.MS.gene38127.t1;Parent=MS.gene38127.t1
chr5.1	exon	79173235	79173308	79173235	ID=MS.gene38127.t1.exon3;Parent=MS.gene38127.t1
chr5.1	CDS	79173235	79173308	79173235	ID=cds.MS.gene38127.t1;Parent=MS.gene38127.t1
chr5.1	exon	79171892	79172028	79171892	ID=MS.gene38127.t1.exon4;Parent=MS.gene38127.t1
chr5.1	CDS	79171892	79172028	79171892	ID=cds.MS.gene38127.t1;Parent=MS.gene38127.t1

Gene Sequence

>MS.gene38127

ATGGCCACCATAGCCAAAGTAACTCTTCTATCTTCTCCCCTTACCTTCAAAACTTCATTTCTTCCTAAATCATCTTCACTTTCTCACACCATTGCCTCTCCAAAAACTACTTCCCTTGGTATCAAAGTTTGTGCTCAATTAGGTAACATTAAAACTCTAGCTTCTAATTATTTAATTTTCATGCAAACATTTTGATTCATTATTTAATTTTTTTTAATTTATTTAGTTATACTATATGATTAATATGGTTGTGTTGGTATATATTTGTATTAGGTGGTCGAGATGAAGAAACCAAGAAAGGAGAAAAAAAGAAATTTATAACTAGAGAACAAGAACCAGAACAGTATGTAATAACAAATTAATAACAATTAATTAATTTAATTCCATGTTTTTACTAATCAAAGTGTAATATTTGTGATGCTACAGATATTGGCAGTCAGCAGGAGAGAGAGAAGGAGAGAATCCAATGATGACGCCACTTCCTTATATTATCTTATTTGGTATGTCAACTCCTTTTGTAATCTTAGCCATTGCTTTTGTAAATGGTTGGATTAAGGTACCAATTAGATAGATGAGGTCACACACCAAACCAAACACTTCCTTGTAATGTGTTCATTCTCACCAATTTTATTGTAAGCACTTCTCACTACTCATTAGTAGTAGTTCTCAAGCTTGAGTAAATAATTTATTTACTTTTTCACATATGTAACGGTACAAATATTATGTCATCAATATTCAATTCCAGCATGTATCATATCCAGTTCCGGTAGAGGACGAGTAAGAATATACTCTATCCAGTCATATTTATAAACAATTTTTGTTTTTCATGTCAAAACATATACATATCGTTTGGTAAAGTAATTTAAATGTACGTGCAGTGTGTAATAGTATAGAACAACGACCTCATGAACAAAATTACGTGACTTAAATTGCACAATGCAGCCCACTTGTTAGTTATCCATCTACAAAATTGAACATTTATATGTACTTAGTATGATGAAAACACGACTAGTTGATGGTATTACTTGCATTTTTTTGTTCTCTCCCAATTCTGCATCCATGGATTTTGGGGCTTTTACAAATTATTCATAGAATATCAAACTCAGCTTAACTCTTCAGCAGGGTAGGAATCAGTTCAATGATTGAATAATTTTGTTTTGAACATCATCGGTTTCACTTGCATCACATTGATCAATAGGTCAGAGTAGAACTACTATTAGTGAAATTGTTAAGGACATAGAAAATTCTCAATCCTAAAGAAATCAGGGGATTCTTTTCTAAATGTTAATAATATAGAAATTTTATTGCCTGCATAACTTCATATGAATCCTCTCAAAAAAAAAAAAAACTAGATATGGAGGTCTACCAGTAGTTGACTATTTGTGTAGCCGTTGTGCAATAGTTTACAAAATGCAATAGATTTAGTGTACTTATATTAGACAATATTTTTTTATAAGGATAGACAAATGTGAGTAGGTTACTGGTTATGTTAACACTTTCTGTTACTACAAACAAACAAAAGAAAGTAATCACACAAAAAGAAAAAAAAAAAAACACAAGAACGAAACAAACCCTCCTTATTACATATTCTTCTTCGCCACTCTCTCTCTCTCTCTCTCTCAAACTATCTCTCTGACTCTCGCTCTCTACAATCTGGATCACCATTCTTTGAATGGAACTTGTCGTTTTTGTTGTTCCAACGATAGGACATCAATCCTTGATCTACACCTTAGTCGCTTGCGGCAGTGTAATTTTGGCAGAATACAATGAATTCACCGGTAGCTTGACTAACATTCAGCAAGCAGTGCCTCCCTACGCAGTGAAAGTTAGTGAATACCAATAA

Protein sequence

>MS.gene38127.t1

MATIAKVTLLSSPLTFKTSFLPKSSSLSHTIASPKTTSLGIKVCAQLGGRDEETKKGEKKKFITREQEPEQYWQSAGEREGENPMMTPLPYIILFGHQSLIYTLVACGSVILAEYNEFTGSLTNIQQAVPPYAVKVSEYQ