Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80631.t1 | XP_003616538.1 | 98.3 | 422 | 7 | 0 | 1 | 422 | 1 | 422 | 3.40E-240 | 840.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80631.t1 | G7KBU0 | 98.3 | 422 | 7 | 0 | 1 | 422 | 1 | 422 | 2.5e-240 | 840.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene80631 | 0.823925 | 1.06E-53 | -1.69E-46 |
| MS.gene04918 | MS.gene80631 | 0.83414 | 3.56E-56 | -1.69E-46 |
| MS.gene04919 | MS.gene80631 | 0.803717 | 3.05E-49 | -1.69E-46 |
| MS.gene04920 | MS.gene80631 | 0.830455 | 2.91E-55 | -1.69E-46 |
| MS.gene049254 | MS.gene80631 | 0.865288 | 6.58E-65 | -1.69E-46 |
| MS.gene049283 | MS.gene80631 | 0.829812 | 4.18E-55 | -1.69E-46 |
| MS.gene049343 | MS.gene80631 | 0.804026 | 2.63E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene80631 | 0.83929 | 1.73E-57 | -1.69E-46 |
| MS.gene049368 | MS.gene80631 | 0.807112 | 5.92E-50 | -1.69E-46 |
| MS.gene049419 | MS.gene80631 | -0.802848 | 4.62E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene80631 | 0.85535 | 6.69E-62 | -1.69E-46 |
| MS.gene049652 | MS.gene80631 | 0.829751 | 4.32E-55 | -1.69E-46 |
| MS.gene049711 | MS.gene80631 | 0.844092 | 9.36E-59 | -1.69E-46 |
| MS.gene049807 | MS.gene80631 | 0.809544 | 1.80E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene80631 | 0.804235 | 2.38E-49 | -1.69E-46 |
| MS.gene050300 | MS.gene80631 | -0.809474 | 1.86E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene80631 | 0.815541 | 8.77E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene80631 | 0.807881 | 4.07E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene80631 | 0.809586 | 1.76E-50 | -1.69E-46 |
| MS.gene051019 | MS.gene80631 | 0.817624 | 2.99E-52 | -1.69E-46 |
| MS.gene051181 | MS.gene80631 | 0.819708 | 1.01E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene80631 | 0.812818 | 3.50E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene80631 | 0.82205 | 2.91E-53 | -1.69E-46 |
| MS.gene051332 | MS.gene80631 | 0.846516 | 2.07E-59 | -1.69E-46 |
| MS.gene051699 | MS.gene80631 | 0.813588 | 2.37E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene80631 | 0.849056 | 4.13E-60 | -1.69E-46 |
| MS.gene051832 | MS.gene80631 | 0.839169 | 1.86E-57 | -1.69E-46 |
| MS.gene05191 | MS.gene80631 | 0.805005 | 1.64E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene80631 | 0.808916 | 2.45E-50 | -1.69E-46 |
| MS.gene052016 | MS.gene80631 | 0.804471 | 2.13E-49 | -1.69E-46 |
| MS.gene052037 | MS.gene80631 | 0.832509 | 9.08E-56 | -1.69E-46 |
| MS.gene052118 | MS.gene80631 | 0.812738 | 3.65E-51 | -1.69E-46 |
| MS.gene052239 | MS.gene80631 | -0.801119 | 1.05E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene80631 | 0.820134 | 8.05E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene80631 | 0.830544 | 2.77E-55 | -1.69E-46 |
| MS.gene052519 | MS.gene80631 | 0.814028 | 1.90E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene80631 | 0.817417 | 3.33E-52 | -1.69E-46 |
| MS.gene052534 | MS.gene80631 | 0.842392 | 2.66E-58 | -1.69E-46 |
| MS.gene052582 | MS.gene80631 | 0.815985 | 6.98E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene80631 | 0.818552 | 1.85E-52 | -1.69E-46 |
| MS.gene052717 | MS.gene80631 | 0.834301 | 3.24E-56 | -1.69E-46 |
| MS.gene052855 | MS.gene80631 | 0.829588 | 4.73E-55 | -1.69E-46 |
| MS.gene052889 | MS.gene80631 | 0.816902 | 4.35E-52 | -1.69E-46 |
| MS.gene05308 | MS.gene80631 | 0.827443 | 1.56E-54 | -1.69E-46 |
| MS.gene053094 | MS.gene80631 | 0.801716 | 7.90E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene80631 | 0.821394 | 4.13E-53 | -1.69E-46 |
| MS.gene053272 | MS.gene80631 | -0.854464 | 1.21E-61 | -1.69E-46 |
| MS.gene053963 | MS.gene80631 | 0.806562 | 7.74E-50 | -1.69E-46 |
| MS.gene054142 | MS.gene80631 | 0.842652 | 2.27E-58 | -1.69E-46 |
| MS.gene054222 | MS.gene80631 | 0.819114 | 1.38E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene80631 | 0.82777 | 1.30E-54 | -1.69E-46 |
| MS.gene054479 | MS.gene80631 | 0.80117 | 1.02E-48 | -1.69E-46 |
| MS.gene054576 | MS.gene80631 | 0.847459 | 1.14E-59 | -1.69E-46 |
| MS.gene05458 | MS.gene80631 | 0.824446 | 8.04E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene80631 | 0.837179 | 6.06E-57 | -1.69E-46 |
| MS.gene054775 | MS.gene80631 | 0.809497 | 1.84E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene80631 | 0.825661 | 4.15E-54 | -1.69E-46 |
| MS.gene054893 | MS.gene80631 | 0.822829 | 1.92E-53 | -1.69E-46 |
| MS.gene054991 | MS.gene80631 | 0.825043 | 5.81E-54 | -1.69E-46 |
| MS.gene055228 | MS.gene80631 | 0.816296 | 5.95E-52 | -1.69E-46 |
| MS.gene055229 | MS.gene80631 | 0.807709 | 4.43E-50 | -1.69E-46 |
| MS.gene05539 | MS.gene80631 | 0.800768 | 1.23E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene80631 | 0.830269 | 3.23E-55 | -1.69E-46 |
| MS.gene055586 | MS.gene80631 | 0.808042 | 3.76E-50 | -1.69E-46 |
| MS.gene055724 | MS.gene80631 | 0.826022 | 3.41E-54 | -1.69E-46 |
| MS.gene055841 | MS.gene80631 | 0.802583 | 5.24E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene80631 | 0.833214 | 6.07E-56 | -1.69E-46 |
| MS.gene056174 | MS.gene80631 | 0.810179 | 1.31E-50 | -1.69E-46 |
| MS.gene056272 | MS.gene80631 | 0.806205 | 9.21E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene80631 | 0.80575 | 1.15E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene80631 | 0.809228 | 2.10E-50 | -1.69E-46 |
| MS.gene056677 | MS.gene80631 | 0.811973 | 5.35E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene80631 | 0.823302 | 1.49E-53 | -1.69E-46 |
| MS.gene056776 | MS.gene80631 | 0.806365 | 8.52E-50 | -1.69E-46 |
| MS.gene056854 | MS.gene80631 | 0.811864 | 5.66E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene80631 | 0.849266 | 3.61E-60 | -1.69E-46 |
| MS.gene05689 | MS.gene80631 | 0.81354 | 2.43E-51 | -1.69E-46 |
| MS.gene05690 | MS.gene80631 | 0.815467 | 9.11E-52 | -1.69E-46 |
| MS.gene056973 | MS.gene80631 | 0.81166 | 6.26E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene80631 | 0.809564 | 1.78E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene80631 | 0.863685 | 2.09E-64 | -1.69E-46 |
| MS.gene057132 | MS.gene80631 | 0.808928 | 2.43E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene80631 | 0.847106 | 1.43E-59 | -1.69E-46 |
| MS.gene057371 | MS.gene80631 | 0.805637 | 1.21E-49 | -1.69E-46 |
| MS.gene057611 | MS.gene80631 | 0.811472 | 6.88E-51 | -1.69E-46 |
| MS.gene057893 | MS.gene80631 | -0.82402 | 1.01E-53 | -1.69E-46 |
| MS.gene058159 | MS.gene80631 | 0.823262 | 1.52E-53 | -1.69E-46 |
| MS.gene058279 | MS.gene80631 | 0.833605 | 4.84E-56 | -1.69E-46 |
| MS.gene058330 | MS.gene80631 | 0.813441 | 2.56E-51 | -1.69E-46 |
| MS.gene058592 | MS.gene80631 | 0.804014 | 2.65E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene80631 | 0.844275 | 8.36E-59 | -1.69E-46 |
| MS.gene058783 | MS.gene80631 | 0.833716 | 4.55E-56 | -1.69E-46 |
| MS.gene05897 | MS.gene80631 | 0.806195 | 9.25E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene80631 | 0.81897 | 1.48E-52 | -1.69E-46 |
| MS.gene059439 | MS.gene80631 | 0.834325 | 3.20E-56 | -1.69E-46 |
| MS.gene05952 | MS.gene80631 | 0.832641 | 8.42E-56 | -1.69E-46 |
| MS.gene059625 | MS.gene80631 | 0.818653 | 1.75E-52 | -1.69E-46 |
| MS.gene059634 | MS.gene80631 | 0.804717 | 1.89E-49 | -1.69E-46 |
| MS.gene059774 | MS.gene80631 | 0.811935 | 5.46E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene80631 | -0.887564 | 1.28E-72 | -1.69E-46 |
| MS.gene059935 | MS.gene80631 | 0.815094 | 1.10E-51 | -1.69E-46 |
| MS.gene060244 | MS.gene80631 | 0.804005 | 2.66E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene80631 | 0.84922 | 3.72E-60 | -1.69E-46 |
| MS.gene060522 | MS.gene80631 | 0.809729 | 1.64E-50 | -1.69E-46 |
| MS.gene060527 | MS.gene80631 | 0.819333 | 1.23E-52 | -1.69E-46 |
| MS.gene060697 | MS.gene80631 | 0.805018 | 1.63E-49 | -1.69E-46 |
| MS.gene060716 | MS.gene80631 | 0.822783 | 1.97E-53 | -1.69E-46 |
| MS.gene060777 | MS.gene80631 | 0.838399 | 2.94E-57 | -1.69E-46 |
| MS.gene060785 | MS.gene80631 | 0.816645 | 4.97E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene80631 | 0.809406 | 1.92E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene80631 | 0.832666 | 8.30E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene80631 | 0.852446 | 4.59E-61 | -1.69E-46 |
| MS.gene060937 | MS.gene80631 | 0.863748 | 2.00E-64 | -1.69E-46 |
| MS.gene061100 | MS.gene80631 | 0.840177 | 1.02E-57 | -1.69E-46 |
| MS.gene061160 | MS.gene80631 | 0.807935 | 3.96E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene80631 | 0.915171 | 8.08E-85 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80631.t1 | MTR_5g081550 | 98.341 | 422 | 7 | 0 | 1 | 422 | 1 | 422 | 0.0 | 857 |
| MS.gene80631.t1 | MTR_3g069720 | 71.528 | 432 | 103 | 6 | 1 | 413 | 1 | 431 | 0.0 | 619 |
| MS.gene80631.t1 | MTR_1g022075 | 52.865 | 384 | 161 | 9 | 1 | 378 | 1 | 370 | 7.05e-136 | 394 |
| MS.gene80631.t1 | MTR_3g111790 | 52.455 | 387 | 160 | 11 | 1 | 378 | 8 | 379 | 1.22e-133 | 389 |
| MS.gene80631.t1 | MTR_5g019880 | 50.524 | 382 | 164 | 7 | 1 | 373 | 10 | 375 | 2.04e-131 | 383 |
| MS.gene80631.t1 | MTR_1g106875 | 44.221 | 398 | 202 | 7 | 14 | 409 | 74 | 453 | 7.44e-112 | 337 |
| MS.gene80631.t1 | MTR_1g018620 | 47.950 | 317 | 157 | 2 | 58 | 374 | 113 | 421 | 1.23e-107 | 326 |
| MS.gene80631.t1 | MTR_3g102670 | 46.906 | 307 | 155 | 3 | 68 | 374 | 93 | 391 | 3.01e-102 | 310 |
| MS.gene80631.t1 | MTR_6g445110 | 42.246 | 374 | 192 | 7 | 14 | 373 | 17 | 380 | 8.12e-98 | 298 |
| MS.gene80631.t1 | MTR_1g054670 | 40.625 | 320 | 170 | 4 | 58 | 376 | 50 | 350 | 3.77e-82 | 257 |
| MS.gene80631.t1 | MTR_7g109880 | 58.974 | 78 | 24 | 3 | 3 | 72 | 125 | 202 | 1.48e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80631.t1 | AT5G05840 | 61.827 | 427 | 143 | 6 | 1 | 408 | 1 | 426 | 0.0 | 514 |
| MS.gene80631.t1 | AT3G55720 | 53.704 | 432 | 176 | 11 | 1 | 409 | 1 | 431 | 3.23e-147 | 426 |
| MS.gene80631.t1 | AT1G75160 | 52.239 | 402 | 158 | 9 | 1 | 377 | 3 | 395 | 1.50e-131 | 384 |
| MS.gene80631.t1 | AT5G66740 | 50.263 | 380 | 170 | 6 | 1 | 374 | 1 | 367 | 7.03e-131 | 382 |
| MS.gene80631.t1 | AT3G19540 | 49.684 | 316 | 150 | 3 | 59 | 374 | 129 | 435 | 1.91e-107 | 326 |
| MS.gene80631.t1 | AT1G49840 | 40.566 | 424 | 230 | 7 | 6 | 419 | 78 | 489 | 9.96e-107 | 324 |
| MS.gene80631.t1 | AT1G27690 | 43.717 | 382 | 198 | 6 | 6 | 378 | 41 | 414 | 8.90e-106 | 320 |
| MS.gene80631.t1 | AT1G79420 | 38.978 | 372 | 198 | 8 | 29 | 376 | 36 | 402 | 1.75e-90 | 280 |
| MS.gene80631.t1 | AT5G06610 | 40.498 | 321 | 170 | 7 | 59 | 376 | 51 | 353 | 7.06e-78 | 246 |
Find 99 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTAGAGTTGGTGGTTTC+TGG | 0.051533 | 5.4:-64296833 | MS.gene80631:CDS |
| CTGAAACTGAATTCATATTT+TGG | 0.078513 | 5.4:-64295188 | MS.gene80631:CDS |
| AATAGATTGGCAGTGGATTT+TGG | 0.183170 | 5.4:+64295414 | None:intergenic |
| GGCATCATTCTCATGCTTCT+AGG | 0.228218 | 5.4:-64296757 | MS.gene80631:CDS |
| ATCATCACTCGTAACATTAA+AGG | 0.273706 | 5.4:-64297414 | MS.gene80631:CDS |
| CAGCCAAAGAACTGGACTTT+TGG | 0.274210 | 5.4:-64295250 | MS.gene80631:CDS |
| TTGAAGAGAGATGAAGAAAA+AGG | 0.287471 | 5.4:-64294955 | MS.gene80631:CDS |
| CAACTCTTGCTTGGTGTTGT+AGG | 0.287651 | 5.4:-64297480 | MS.gene80631:CDS |
| GAACCAAAAGTCCAGTTCTT+TGG | 0.292412 | 5.4:+64295247 | None:intergenic |
| GATGATCTTGATTCATTGTT+TGG | 0.312116 | 5.4:+64297531 | None:intergenic |
| AGAGTTTGTGGCAGGGGAAG+GGG | 0.331687 | 5.4:-64296954 | MS.gene80631:CDS |
| TTGTTGATGAAAATATCTTC+TGG | 0.344725 | 5.4:+64297594 | None:intergenic |
| AGTAGCAACATAGAAATAAT+TGG | 0.366580 | 5.4:-64295294 | MS.gene80631:CDS |
| TAGCACATTGTGGGAAAACT+TGG | 0.371373 | 5.4:-64295110 | MS.gene80631:CDS |
| CAAGGCCATCCTCATGATAA+AGG | 0.376628 | 5.4:+64297640 | None:intergenic |
| GGCTATTTCAGCCAAAGAAC+TGG | 0.377671 | 5.4:-64295258 | MS.gene80631:CDS |
| CACATCAATAGCAGCTACTT+TGG | 0.378200 | 5.4:+64294864 | None:intergenic |
| GCATCATTCTCATGCTTCTA+GGG | 0.380106 | 5.4:-64296756 | MS.gene80631:CDS |
| CAATGGGTGAAGTGAGAATA+GGG | 0.392256 | 5.4:-64296982 | MS.gene80631:CDS |
| GTTTAGAGTTGGTGGTTTCT+GGG | 0.395885 | 5.4:-64296832 | MS.gene80631:CDS |
| GGTGGATATGAAAGAAGAGT+TGG | 0.398116 | 5.4:-64296894 | MS.gene80631:CDS |
| AAGAGTTGAATATTTGTGTT+TGG | 0.407599 | 5.4:+64297495 | None:intergenic |
| GCCACTTAAACGTTTACTTC+AGG | 0.407710 | 5.4:-64296723 | MS.gene80631:intron |
| CTTGTCCTTGAATGATTCTC+AGG | 0.407841 | 5.4:+64295060 | None:intergenic |
| TGGGTCACTTTATCAAGGTT+TGG | 0.410083 | 5.4:-64295090 | MS.gene80631:CDS |
| AACTCTAAACACCACAATTC+TGG | 0.410084 | 5.4:+64296845 | None:intergenic |
| GGTTTGTACTCATTGGTGAT+AGG | 0.410664 | 5.4:+64297438 | None:intergenic |
| TTTAATGTTACGAGTGATGA+TGG | 0.411678 | 5.4:+64297416 | None:intergenic |
| CAGAGTTTGTGGCAGGGGAA+GGG | 0.418765 | 5.4:-64296955 | MS.gene80631:CDS |
| GGACAAGTATAAATGAGGTT+TGG | 0.421027 | 5.4:-64295044 | MS.gene80631:CDS |
| TACTCATTGGTGATAGGAAA+AGG | 0.430614 | 5.4:+64297444 | None:intergenic |
| GAGTTTGTGGCAGGGGAAGG+GGG | 0.447315 | 5.4:-64296953 | MS.gene80631:CDS |
| ACAAATATTCAACTCTTGCT+TGG | 0.448693 | 5.4:-64297489 | MS.gene80631:CDS |
| ACCTGAAGTAAACGTTTAAG+TGG | 0.449339 | 5.4:+64296722 | None:intergenic |
| TCAGAGTTTGTGGCAGGGGA+AGG | 0.452821 | 5.4:-64296956 | MS.gene80631:CDS |
| TGTTGATGAAAATATCTTCT+GGG | 0.454937 | 5.4:+64297595 | None:intergenic |
| GCAATGGGTGAAGTGAGAAT+AGG | 0.466333 | 5.4:-64296983 | MS.gene80631:CDS |
| GTGATAGGAAAAGGAATCAA+TGG | 0.468167 | 5.4:+64297453 | None:intergenic |
| TAATATTAAAGGGTTGTCCT+TGG | 0.470790 | 5.4:-64295001 | MS.gene80631:CDS |
| TGTTGAGTTGTTGAATAGAT+TGG | 0.471791 | 5.4:+64295401 | None:intergenic |
| ATTGTGGTGTTTAGAGTTGG+TGG | 0.473766 | 5.4:-64296840 | MS.gene80631:CDS |
| GAACTTCTAGCACTGTTTCA+AGG | 0.479426 | 5.4:+64297622 | None:intergenic |
| AATAGGGACCTCAGAGTTTG+TGG | 0.484018 | 5.4:-64296966 | MS.gene80631:CDS |
| AAACTTGGGTCACTTTATCA+AGG | 0.484471 | 5.4:-64295095 | MS.gene80631:CDS |
| CATACAAGACTATAGAATAG+TGG | 0.484564 | 5.4:-64295145 | MS.gene80631:CDS |
| GCTTCTTGTTTGTAATGAAG+TGG | 0.484584 | 5.4:+64295317 | None:intergenic |
| AAAATTAGTGCAGGGAGTGA+TGG | 0.488027 | 5.4:-64296806 | MS.gene80631:CDS |
| GATGGTGAAGAAAGTGAAGA+AGG | 0.494517 | 5.4:-64296915 | MS.gene80631:CDS |
| AAATGAGGTTTGGAAAATTG+AGG | 0.496792 | 5.4:-64295034 | MS.gene80631:CDS |
| GTGGATATGAAAGAAGAGTT+GGG | 0.501576 | 5.4:-64296893 | MS.gene80631:CDS |
| TTCAAGGACAAGTATAAATG+AGG | 0.502582 | 5.4:-64295049 | MS.gene80631:CDS |
| TCTGGGTACAAAATTAGTGC+AGG | 0.503450 | 5.4:-64296815 | MS.gene80631:CDS |
| GCCATCCTCATGATAAAGGT+TGG | 0.509678 | 5.4:+64297644 | None:intergenic |
| GGGACCTCAGAGTTTGTGGC+AGG | 0.512171 | 5.4:-64296962 | MS.gene80631:CDS |
| AGTAAACGTTTAAGTGGCCT+AGG | 0.518850 | 5.4:+64296728 | None:intergenic |
| CCATCCTCATGATAAAGGTT+GGG | 0.519135 | 5.4:+64297645 | None:intergenic |
| GATGATGGGTTTGTACTCAT+TGG | 0.529124 | 5.4:+64297431 | None:intergenic |
| GACCTCAGAGTTTGTGGCAG+GGG | 0.529813 | 5.4:-64296960 | MS.gene80631:CDS |
| GTATTCAAATAGCACATTGT+GGG | 0.530481 | 5.4:-64295119 | MS.gene80631:CDS |
| GTTGAAAGTATGTATGCAAT+GGG | 0.538137 | 5.4:-64296998 | MS.gene80631:CDS |
| AAAACAATATGTGGCAGCTG+TGG | 0.539484 | 5.4:-64297044 | MS.gene80631:CDS |
| CCCAACCTTTATCATGAGGA+TGG | 0.540030 | 5.4:-64297645 | MS.gene80631:CDS |
| GTTGTTGAATAGATTGGCAG+TGG | 0.542030 | 5.4:+64295407 | None:intergenic |
| GATGAAAATATCTTCTGGGA+TGG | 0.548098 | 5.4:+64297599 | None:intergenic |
| TGCAGGGAGTGATGGAAAAG+TGG | 0.552240 | 5.4:-64296798 | MS.gene80631:CDS |
| GTGATGGAAAAGTGGCTTGG+AGG | 0.553808 | 5.4:-64296790 | MS.gene80631:CDS |
| ATGAAAATATCTTCTGGGAT+GGG | 0.555387 | 5.4:+64297600 | None:intergenic |
| AGAATTGTGGTGTTTAGAGT+TGG | 0.558165 | 5.4:-64296843 | MS.gene80631:CDS |
| TTGCTTCATGTTCTTCCATG+TGG | 0.558177 | 5.4:+64297563 | None:intergenic |
| GGAGTGATGGAAAAGTGGCT+TGG | 0.558565 | 5.4:-64296793 | MS.gene80631:CDS |
| GGTGAAGAAAGTGAAGAAGG+TGG | 0.561830 | 5.4:-64296912 | MS.gene80631:CDS |
| CATCATTCTCATGCTTCTAG+GGG | 0.571410 | 5.4:-64296755 | MS.gene80631:CDS |
| TTGTCCCAACCTTTATCATG+AGG | 0.572543 | 5.4:-64297649 | MS.gene80631:CDS |
| AAACAATATGTGGCAGCTGT+GGG | 0.574423 | 5.4:-64297043 | MS.gene80631:CDS |
| AAGGACCTGAGAATCATTCA+AGG | 0.576245 | 5.4:-64295065 | MS.gene80631:CDS |
| TTAATGTTACGAGTGATGAT+GGG | 0.585219 | 5.4:+64297417 | None:intergenic |
| GTATATAGTAAAACAATATG+TGG | 0.585668 | 5.4:-64297053 | MS.gene80631:CDS |
| TGTTGAAAGTATGTATGCAA+TGG | 0.588575 | 5.4:-64296999 | MS.gene80631:CDS |
| GGTATTCAAATAGCACATTG+TGG | 0.592853 | 5.4:-64295120 | MS.gene80631:CDS |
| TCATCTCTCTTCAAATCACT+AGG | 0.595333 | 5.4:+64294964 | None:intergenic |
| TTCCCCTGCCACAAACTCTG+AGG | 0.595617 | 5.4:+64296958 | None:intergenic |
| TGGCTTGGAGGCAAACACCT+TGG | 0.599300 | 5.4:-64296778 | MS.gene80631:CDS |
| CAAAGTAGCTGCTATTGATG+TGG | 0.599483 | 5.4:-64294863 | MS.gene80631:CDS |
| AGCACATTGTGGGAAAACTT+GGG | 0.600682 | 5.4:-64295109 | MS.gene80631:CDS |
| ACTTTATCAAGGTTTGGTGA+AGG | 0.603544 | 5.4:-64295084 | MS.gene80631:CDS |
| CATGGAAGAACATGAAGCAA+TGG | 0.606163 | 5.4:-64297560 | MS.gene80631:CDS |
| CTGGGTACAAAATTAGTGCA+GGG | 0.608598 | 5.4:-64296814 | MS.gene80631:CDS |
| ATGCTTCTAGGGGTCCACCT+AGG | 0.608662 | 5.4:-64296745 | MS.gene80631:CDS |
| GGGTGCGAATAGCAAGAAGA+TGG | 0.609487 | 5.4:-64296933 | MS.gene80631:CDS |
| CAATATGTGGCAGCTGTGGG+AGG | 0.614293 | 5.4:-64297040 | MS.gene80631:CDS |
| TTCAACAACTCAACATGCAT+AGG | 0.619833 | 5.4:-64295393 | MS.gene80631:CDS |
| CAAGACTATAGAATAGTGGA+TGG | 0.626381 | 5.4:-64295141 | MS.gene80631:CDS |
| GAAGCATGAGAATGATGCCA+AGG | 0.632801 | 5.4:+64296761 | None:intergenic |
| GGACCTCAGAGTTTGTGGCA+GGG | 0.643727 | 5.4:-64296961 | MS.gene80631:CDS |
| TCTCTCTTCAAATCACTAGG+AGG | 0.655690 | 5.4:+64294967 | None:intergenic |
| TCAACAAGAGTGGAACCACA+TGG | 0.660301 | 5.4:-64297578 | MS.gene80631:CDS |
| AAACGTTTAAGTGGCCTAGG+TGG | 0.667507 | 5.4:+64296731 | None:intergenic |
| GATATGAAAGAAGAGTTGGG+AGG | 0.679988 | 5.4:-64296890 | MS.gene80631:CDS |
| GGCAAAAGAGACCAGAATTG+TGG | 0.686509 | 5.4:-64296856 | MS.gene80631:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTGTATAAAAAAATATTAA+AGG | - | chr5.4:64295326-64295345 | MS.gene80631:CDS | 10.0% |
| !! | TATAACAAAAAATATAAGTT+TGG | - | chr5.4:64296194-64296213 | MS.gene80631:intron | 10.0% |
| !!! | AAGTTGATTTTAATATTAAA+GGG | - | chr5.4:64297474-64297493 | MS.gene80631:CDS | 10.0% |
| !!! | AATTATTTTATGTATTTTGA+AGG | - | chr5.4:64295393-64295412 | MS.gene80631:CDS | 10.0% |
| !!! | TCATTTTATTTTTATAACAA+TGG | - | chr5.4:64296006-64296025 | MS.gene80631:intron | 10.0% |
| !!! | ATTTTATACTTACAATGTTA+TGG | + | chr5.4:64295097-64295116 | None:intergenic | 15.0% |
| !!! | GAAGTTGATTTTAATATTAA+AGG | - | chr5.4:64297473-64297492 | MS.gene80631:CDS | 15.0% |
| !!! | TTCTCAAAATTTTATCTAAA+TGG | - | chr5.4:64295282-64295301 | MS.gene80631:CDS | 15.0% |
| !! | ATTTCCATGAAAAAACAATT+TGG | + | chr5.4:64296320-64296339 | None:intergenic | 20.0% |
| !! | GTATATAGTAAAACAATATG+TGG | - | chr5.4:64295432-64295451 | MS.gene80631:intron | 20.0% |
| !! | TAGACAAAATTATGATTGAA+TGG | - | chr5.4:64296669-64296688 | MS.gene80631:intron | 20.0% |
| !! | TTATGAATTTAAGAAACTTG+TGG | + | chr5.4:64295260-64295279 | None:intergenic | 20.0% |
| !!! | AGATTTTAGTTTAATCAAGT+TGG | + | chr5.4:64297276-64297295 | None:intergenic | 20.0% |
| !!! | ATGTTAATATGAGGAAATTT+TGG | - | chr5.4:64296768-64296787 | MS.gene80631:CDS | 20.0% |
| !!! | ATTATTGTCTTAATTTGATC+AGG | - | chr5.4:64297040-64297059 | MS.gene80631:CDS | 20.0% |
| !!! | ATTTCCAAATTGTTTTTTCA+TGG | - | chr5.4:64296313-64296332 | MS.gene80631:intron | 20.0% |
| !!! | GTTTTGAAAATGTTAATATG+AGG | - | chr5.4:64296759-64296778 | MS.gene80631:CDS | 20.0% |
| !!! | TATTTTATGTATTTTGAAGG+AGG | - | chr5.4:64295396-64295415 | MS.gene80631:CDS | 20.0% |
| !!! | TGAAACTGAATTCATATTTT+GGG | - | chr5.4:64297298-64297317 | MS.gene80631:intron | 20.0% |
| !!! | TGTTAATATGAGGAAATTTT+GGG | - | chr5.4:64296769-64296788 | MS.gene80631:CDS | 20.0% |
| !!! | TTATTGTCTTAATTTGATCA+GGG | - | chr5.4:64297041-64297060 | MS.gene80631:CDS | 20.0% |
| !!! | TTTTGTCTAATTAAAAGTTG+TGG | + | chr5.4:64295176-64295195 | None:intergenic | 20.0% |
| ! | AAGAGTTGAATATTTGTGTT+TGG | + | chr5.4:64294993-64295012 | None:intergenic | 25.0% |
| ! | ACAATTTAATAGCTAATGCA+AGG | - | chr5.4:64296390-64296409 | MS.gene80631:intron | 25.0% |
| ! | ACTATGATTTAAAGATCGTA+CGG | + | chr5.4:64296624-64296643 | None:intergenic | 25.0% |
| ! | AGTAGCAACATAGAAATAAT+TGG | - | chr5.4:64297191-64297210 | MS.gene80631:intron | 25.0% |
| ! | GTATAATGCATATCAAAAGA+GGG | - | chr5.4:64296905-64296924 | MS.gene80631:CDS | 25.0% |
| ! | TATAATGCATATCAAAAGAG+GGG | - | chr5.4:64296906-64296925 | MS.gene80631:CDS | 25.0% |
| !! | CTGAAACTGAATTCATATTT+TGG | - | chr5.4:64297297-64297316 | MS.gene80631:intron | 25.0% |
| !! | CTTGTCACATATTTTTCTTT+TGG | - | chr5.4:64296869-64296888 | MS.gene80631:CDS | 25.0% |
| !! | GAAGCAGATTGAATTTTATA+TGG | + | chr5.4:64297584-64297603 | None:intergenic | 25.0% |
| !! | GTTAATATGAGGAAATTTTG+GGG | - | chr5.4:64296770-64296789 | MS.gene80631:CDS | 25.0% |
| !! | TAATTTTGTCTAAGTTCAAG+TGG | + | chr5.4:64296661-64296680 | None:intergenic | 25.0% |
| !! | TGTTGATGAAAATATCTTCT+GGG | + | chr5.4:64294893-64294912 | None:intergenic | 25.0% |
| !! | TTAATATGAGGAAATTTTGG+GGG | - | chr5.4:64296771-64296790 | MS.gene80631:CDS | 25.0% |
| !! | TTGTTGATGAAAATATCTTC+TGG | + | chr5.4:64294894-64294913 | None:intergenic | 25.0% |
| !!! | ACATATTTTTCTTTTGGCTA+TGG | - | chr5.4:64296875-64296894 | MS.gene80631:CDS | 25.0% |
| !!! | CATATTTTTCTTTTGGCTAT+GGG | - | chr5.4:64296876-64296895 | MS.gene80631:CDS | 25.0% |
| AAATGAGGTTTGGAAAATTG+AGG | - | chr5.4:64297451-64297470 | MS.gene80631:CDS | 30.0% | |
| AAATGTAGACCTTCACTTTA+TGG | + | chr5.4:64296356-64296375 | None:intergenic | 30.0% | |
| AAGGGAAAACAAAGTGAAAT+GGG | + | chr5.4:64296146-64296165 | None:intergenic | 30.0% | |
| ACAAATATTCAACTCTTGCT+TGG | - | chr5.4:64294996-64295015 | MS.gene80631:CDS | 30.0% | |
| ACCTTCATGTAAAAAAGACA+AGG | + | chr5.4:64296165-64296184 | None:intergenic | 30.0% | |
| ATCATCACTCGTAACATTAA+AGG | - | chr5.4:64295071-64295090 | MS.gene80631:CDS | 30.0% | |
| CAAATCAATTAGGCAATGTT+TGG | + | chr5.4:64296239-64296258 | None:intergenic | 30.0% | |
| CATACAAGACTATAGAATAG+TGG | - | chr5.4:64297340-64297359 | MS.gene80631:intron | 30.0% | |
| CCTTCATGTAAAAAAGACAA+GGG | + | chr5.4:64296164-64296183 | None:intergenic | 30.0% | |
| CTATGATTTAAAGATCGTAC+GGG | + | chr5.4:64296623-64296642 | None:intergenic | 30.0% | |
| GATGATCTTGATTCATTGTT+TGG | + | chr5.4:64294957-64294976 | None:intergenic | 30.0% | |
| GGTATAATGCATATCAAAAG+AGG | - | chr5.4:64296904-64296923 | MS.gene80631:CDS | 30.0% | |
| GTATTCAAATAGCACATTGT+GGG | - | chr5.4:64297366-64297385 | MS.gene80631:intron | 30.0% | |
| TAATATTAAAGGGTTGTCCT+TGG | - | chr5.4:64297484-64297503 | MS.gene80631:CDS | 30.0% | |
| TCAAAAGAGGGGAATATAAA+AGG | - | chr5.4:64296917-64296936 | MS.gene80631:CDS | 30.0% | |
| TTAATGTTACGAGTGATGAT+GGG | + | chr5.4:64295071-64295090 | None:intergenic | 30.0% | |
| TTCAAGGACAAGTATAAATG+AGG | - | chr5.4:64297436-64297455 | MS.gene80631:CDS | 30.0% | |
| TTGAAGAGAGATGAAGAAAA+AGG | - | chr5.4:64297530-64297549 | MS.gene80631:CDS | 30.0% | |
| TTTAATGTTACGAGTGATGA+TGG | + | chr5.4:64295072-64295091 | None:intergenic | 30.0% | |
| ! | ACAAGCATTGTTGACATTTA+GGG | + | chr5.4:64296463-64296482 | None:intergenic | 30.0% |
| ! | ATAATTGGTCACACAGTTTT+AGG | - | chr5.4:64297206-64297225 | MS.gene80631:intron | 30.0% |
| ! | GATATTTTCATCAACAAGAG+TGG | - | chr5.4:64294897-64294916 | MS.gene80631:CDS | 30.0% |
| ! | GTTGAAAGTATGTATGCAAT+GGG | - | chr5.4:64295487-64295506 | MS.gene80631:intron | 30.0% |
| ! | TGTTGAAAGTATGTATGCAA+TGG | - | chr5.4:64295486-64295505 | MS.gene80631:intron | 30.0% |
| ! | TGTTGAGTTGTTGAATAGAT+TGG | + | chr5.4:64297087-64297106 | None:intergenic | 30.0% |
| !! | AAAACGCAAGTGTTTTTACT+TGG | - | chr5.4:64295192-64295211 | MS.gene80631:CDS | 30.0% |
| !! | ATGAAAATATCTTCTGGGAT+GGG | + | chr5.4:64294888-64294907 | None:intergenic | 30.0% |
| !! | ATGTCGATTTATTGTTCAAC+CGG | - | chr5.4:64296714-64296733 | MS.gene80631:intron | 30.0% |
| !!! | TGACCTTTTTCAAATGAGAA+GGG | + | chr5.4:64296293-64296312 | None:intergenic | 30.0% |
| !!! | TTGACCTTTTTCAAATGAGA+AGG | + | chr5.4:64296294-64296313 | None:intergenic | 30.0% |
| AAAGAGGGGAATATAAAAGG+AGG | - | chr5.4:64296920-64296939 | MS.gene80631:CDS | 35.0% | |
| AACTCTAAACACCACAATTC+TGG | + | chr5.4:64295643-64295662 | None:intergenic | 35.0% | |
| ACCTGAAGTAAACGTTTAAG+TGG | + | chr5.4:64295766-64295785 | None:intergenic | 35.0% | |
| AGGAGGTAAAAAACAATCCA+AGG | + | chr5.4:64297504-64297523 | None:intergenic | 35.0% | |
| CAAGGGAAAACAAAGTGAAA+TGG | + | chr5.4:64296147-64296166 | None:intergenic | 35.0% | |
| CAATTAGGCAATGTTTGGTT+AGG | + | chr5.4:64296234-64296253 | None:intergenic | 35.0% | |
| GGACAAGTATAAATGAGGTT+TGG | - | chr5.4:64297441-64297460 | MS.gene80631:CDS | 35.0% | |
| GGGGTAGATTCAAATCAATT+AGG | + | chr5.4:64296249-64296268 | None:intergenic | 35.0% | |
| GGTATTCAAATAGCACATTG+TGG | - | chr5.4:64297365-64297384 | MS.gene80631:intron | 35.0% | |
| GTGATAGGAAAAGGAATCAA+TGG | + | chr5.4:64295035-64295054 | None:intergenic | 35.0% | |
| GTGGATATGAAAGAAGAGTT+GGG | - | chr5.4:64295592-64295611 | MS.gene80631:intron | 35.0% | |
| TAGACCTTCACTTTATGGTA+GGG | + | chr5.4:64296351-64296370 | None:intergenic | 35.0% | |
| TCATCTCTCTTCAAATCACT+AGG | + | chr5.4:64297524-64297543 | None:intergenic | 35.0% | |
| TTATCCCTACCATAAAGTGA+AGG | - | chr5.4:64296344-64296363 | MS.gene80631:intron | 35.0% | |
| TTCAACAACTCAACATGCAT+AGG | - | chr5.4:64297092-64297111 | MS.gene80631:intron | 35.0% | |
| ! | AAACTTGGGTCACTTTATCA+AGG | - | chr5.4:64297390-64297409 | MS.gene80631:intron | 35.0% |
| ! | AGAATTGTGGTGTTTAGAGT+TGG | - | chr5.4:64295642-64295661 | MS.gene80631:intron | 35.0% |
| ! | CAAGACTATAGAATAGTGGA+TGG | - | chr5.4:64297344-64297363 | MS.gene80631:intron | 35.0% |
| ! | CAAGCATTGTTGACATTTAG+GGG | + | chr5.4:64296462-64296481 | None:intergenic | 35.0% |
| ! | CACTTTGAGTTCGTTTATAG+TGG | + | chr5.4:64295852-64295871 | None:intergenic | 35.0% |
| ! | GACAAGCATTGTTGACATTT+AGG | + | chr5.4:64296464-64296483 | None:intergenic | 35.0% |
| ! | GATGAAAATATCTTCTGGGA+TGG | + | chr5.4:64294889-64294908 | None:intergenic | 35.0% |
| ! | GATTTTCTCGAAGCTTTTTG+TGG | - | chr5.4:64295304-64295323 | MS.gene80631:CDS | 35.0% |
| ! | GCTTCTTGTTTGTAATGAAG+TGG | + | chr5.4:64297171-64297190 | None:intergenic | 35.0% |
| ! | TACTCATTGGTGATAGGAAA+AGG | + | chr5.4:64295044-64295063 | None:intergenic | 35.0% |
| ! | TGGTTTGCAAAATGTTGTGT+TGG | - | chr5.4:64296796-64296815 | MS.gene80631:CDS | 35.0% |
| !! | AATAGATTGGCAGTGGATTT+TGG | + | chr5.4:64297074-64297093 | None:intergenic | 35.0% |
| !! | ACTTTATCAAGGTTTGGTGA+AGG | - | chr5.4:64297401-64297420 | MS.gene80631:intron | 35.0% |
| !!! | CCCTTGTCTTTTTTACATGA+AGG | - | chr5.4:64296161-64296180 | MS.gene80631:intron | 35.0% |
| AAAACAATATGTGGCAGCTG+TGG | - | chr5.4:64295441-64295460 | MS.gene80631:intron | 40.0% | |
| AAAATTAGTGCAGGGAGTGA+TGG | - | chr5.4:64295679-64295698 | MS.gene80631:intron | 40.0% | |
| AAACAATATGTGGCAGCTGT+GGG | - | chr5.4:64295442-64295461 | MS.gene80631:intron | 40.0% | |
| AAGGACCTGAGAATCATTCA+AGG | - | chr5.4:64297420-64297439 | MS.gene80631:CDS | 40.0% | |
| AATCTACCCCACCTAAAACT+AGG | - | chr5.4:64296259-64296278 | MS.gene80631:intron | 40.0% | |
| AGCACATTGTGGGAAAACTT+GGG | - | chr5.4:64297376-64297395 | MS.gene80631:intron | 40.0% | |
| AGGGGTCACAGCTAATTAAT+TGG | + | chr5.4:64296444-64296463 | None:intergenic | 40.0% | |
| AGTAAACGTTTAAGTGGCCT+AGG | + | chr5.4:64295760-64295779 | None:intergenic | 40.0% | |
| CAAAACTAGACCGAACTTCA+TGG | + | chr5.4:64296745-64296764 | None:intergenic | 40.0% | |
| CAAAGTAGCTGCTATTGATG+TGG | - | chr5.4:64297622-64297641 | MS.gene80631:CDS | 40.0% | |
| CAATGGGTGAAGTGAGAATA+GGG | - | chr5.4:64295503-64295522 | MS.gene80631:intron | 40.0% | |
| CACATCAATAGCAGCTACTT+TGG | + | chr5.4:64297624-64297643 | None:intergenic | 40.0% | |
| CATCATTCTCATGCTTCTAG+GGG | - | chr5.4:64295730-64295749 | MS.gene80631:intron | 40.0% | |
| CATGGAAGAACATGAAGCAA+TGG | - | chr5.4:64294925-64294944 | MS.gene80631:CDS | 40.0% | |
| CCATCCTCATGATAAAGGTT+GGG | + | chr5.4:64294843-64294862 | None:intergenic | 40.0% | |
| CCTCCCTTCTCATTTGAAAA+AGG | - | chr5.4:64296287-64296306 | MS.gene80631:intron | 40.0% | |
| CTGGGTACAAAATTAGTGCA+GGG | - | chr5.4:64295671-64295690 | MS.gene80631:intron | 40.0% | |
| CTTGTCCTTGAATGATTCTC+AGG | + | chr5.4:64297428-64297447 | None:intergenic | 40.0% | |
| GAACCAAAAGTCCAGTTCTT+TGG | + | chr5.4:64297241-64297260 | None:intergenic | 40.0% | |
| GAACTTCTAGCACTGTTTCA+AGG | + | chr5.4:64294866-64294885 | None:intergenic | 40.0% | |
| GAGAGATGAAGAAAAAGGAG+TGG | - | chr5.4:64297535-64297554 | MS.gene80631:CDS | 40.0% | |
| GATATGAAAGAAGAGTTGGG+AGG | - | chr5.4:64295595-64295614 | MS.gene80631:intron | 40.0% | |
| GATGGTGAAGAAAGTGAAGA+AGG | - | chr5.4:64295570-64295589 | MS.gene80631:intron | 40.0% | |
| GCATCATTCTCATGCTTCTA+GGG | - | chr5.4:64295729-64295748 | MS.gene80631:intron | 40.0% | |
| GCCACTTAAACGTTTACTTC+AGG | - | chr5.4:64295762-64295781 | MS.gene80631:intron | 40.0% | |
| GGTGGATATGAAAGAAGAGT+TGG | - | chr5.4:64295591-64295610 | MS.gene80631:intron | 40.0% | |
| GTAGACCTTCACTTTATGGT+AGG | + | chr5.4:64296352-64296371 | None:intergenic | 40.0% | |
| GTTGTTGAATAGATTGGCAG+TGG | + | chr5.4:64297081-64297100 | None:intergenic | 40.0% | |
| TAGCACATTGTGGGAAAACT+TGG | - | chr5.4:64297375-64297394 | MS.gene80631:intron | 40.0% | |
| TCTCTCTTCAAATCACTAGG+AGG | + | chr5.4:64297521-64297540 | None:intergenic | 40.0% | |
| TCTGGGTACAAAATTAGTGC+AGG | - | chr5.4:64295670-64295689 | MS.gene80631:intron | 40.0% | |
| TTGCTTCATGTTCTTCCATG+TGG | + | chr5.4:64294925-64294944 | None:intergenic | 40.0% | |
| TTGTCCCAACCTTTATCATG+AGG | - | chr5.4:64294836-64294855 | MS.gene80631:CDS | 40.0% | |
| ! | ATTGTGGTGTTTAGAGTTGG+TGG | - | chr5.4:64295645-64295664 | MS.gene80631:intron | 40.0% |
| ! | GGTTTGTACTCATTGGTGAT+AGG | + | chr5.4:64295050-64295069 | None:intergenic | 40.0% |
| ! | TAACAATGGACTCAATCCCA+TGG | - | chr5.4:64296020-64296039 | MS.gene80631:intron | 40.0% |
| ! | TGGGTCACTTTATCAAGGTT+TGG | - | chr5.4:64297395-64297414 | MS.gene80631:intron | 40.0% |
| !! | GATGATGGGTTTGTACTCAT+TGG | + | chr5.4:64295057-64295076 | None:intergenic | 40.0% |
| !! | GTTTAGAGTTGGTGGTTTCT+GGG | - | chr5.4:64295653-64295672 | MS.gene80631:intron | 40.0% |
| !! | TGTTTAGAGTTGGTGGTTTC+TGG | - | chr5.4:64295652-64295671 | MS.gene80631:intron | 40.0% |
| !! | TTCTTTTGGCTATGGGACAA+CGG | - | chr5.4:64296883-64296902 | MS.gene80631:CDS | 40.0% |
| !!! | CCTTTTTCAAATGAGAAGGG+AGG | + | chr5.4:64296290-64296309 | None:intergenic | 40.0% |
| AAACGTTTAAGTGGCCTAGG+TGG | + | chr5.4:64295757-64295776 | None:intergenic | 45.0% | |
| AATAGGGACCTCAGAGTTTG+TGG | - | chr5.4:64295519-64295538 | MS.gene80631:intron | 45.0% | |
| ACCGAACTTCATGGTTCAAC+CGG | + | chr5.4:64296736-64296755 | None:intergenic | 45.0% | |
| ACCGGTTGAACCATGAAGTT+CGG | - | chr5.4:64296732-64296751 | MS.gene80631:CDS | 45.0% | |
| CAAGGCCATCCTCATGATAA+AGG | + | chr5.4:64294848-64294867 | None:intergenic | 45.0% | |
| CCCAACCTTTATCATGAGGA+TGG | - | chr5.4:64294840-64294859 | MS.gene80631:CDS | 45.0% | |
| GAAGCATGAGAATGATGCCA+AGG | + | chr5.4:64295727-64295746 | None:intergenic | 45.0% | |
| GCAATGGGTGAAGTGAGAAT+AGG | - | chr5.4:64295502-64295521 | MS.gene80631:intron | 45.0% | |
| GCCATCCTCATGATAAAGGT+TGG | + | chr5.4:64294844-64294863 | None:intergenic | 45.0% | |
| GGCAAAAGAGACCAGAATTG+TGG | - | chr5.4:64295629-64295648 | MS.gene80631:intron | 45.0% | |
| GGCATCATTCTCATGCTTCT+AGG | - | chr5.4:64295728-64295747 | MS.gene80631:intron | 45.0% | |
| GGTGAAGAAAGTGAAGAAGG+TGG | - | chr5.4:64295573-64295592 | MS.gene80631:intron | 45.0% | |
| TCAACAAGAGTGGAACCACA+TGG | - | chr5.4:64294907-64294926 | MS.gene80631:CDS | 45.0% | |
| ! | CAGCCAAAGAACTGGACTTT+TGG | - | chr5.4:64297235-64297254 | MS.gene80631:intron | 45.0% |
| ! | GGCTATTTCAGCCAAAGAAC+TGG | - | chr5.4:64297227-64297246 | MS.gene80631:intron | 45.0% |
| !! | AGTTGGGAGGTTTTGTGTTG+TGG | - | chr5.4:64295608-64295627 | MS.gene80631:intron | 45.0% |
| !! | ATCGTACGGGTTAGATGCAA+GGG | + | chr5.4:64296610-64296629 | None:intergenic | 45.0% |
| !! | ATGAGGAAATTTTGGGGGTG+TGG | - | chr5.4:64296776-64296795 | MS.gene80631:CDS | 45.0% |
| !! | CAACTCTTGCTTGGTGTTGT+AGG | - | chr5.4:64295005-64295024 | MS.gene80631:CDS | 45.0% |
| !!! | AGGAAGCACCTAGTTTTAGG+TGG | + | chr5.4:64296270-64296289 | None:intergenic | 45.0% |
| !!! | GAAGCACCTAGTTTTAGGTG+GGG | + | chr5.4:64296268-64296287 | None:intergenic | 45.0% |
| !!! | GGAAGCACCTAGTTTTAGGT+GGG | + | chr5.4:64296269-64296288 | None:intergenic | 45.0% |
| !!! | TATTTTGAAGGAGGCGTCGA+TGG | - | chr5.4:64295405-64295424 | MS.gene80631:CDS | 45.0% |
| ATCAAAGGGATTGGAAGGGC+AGG | + | chr5.4:64296560-64296579 | None:intergenic | 50.0% | |
| CACCGTGAGATGATTGGAGT+CGG | - | chr5.4:64296584-64296603 | MS.gene80631:intron | 50.0% | |
| GCCCATCAAAGGGATTGGAA+GGG | + | chr5.4:64296564-64296583 | None:intergenic | 50.0% | |
| GCCCTTCCAATCCCTTTGAT+GGG | - | chr5.4:64296560-64296579 | MS.gene80631:intron | 50.0% | |
| GGGTGCGAATAGCAAGAAGA+TGG | - | chr5.4:64295552-64295571 | MS.gene80631:intron | 50.0% | |
| TGCCCTTCCAATCCCTTTGA+TGG | - | chr5.4:64296559-64296578 | MS.gene80631:intron | 50.0% | |
| ! | CAATGGACTCAATCCCATGG+TGG | - | chr5.4:64296023-64296042 | MS.gene80631:intron | 50.0% |
| ! | GGAGTGATGGAAAAGTGGCT+TGG | - | chr5.4:64295692-64295711 | MS.gene80631:intron | 50.0% |
| ! | GTGATGGAAAAGTGGCTTGG+AGG | - | chr5.4:64295695-64295714 | MS.gene80631:intron | 50.0% |
| ! | TGCAGGGAGTGATGGAAAAG+TGG | - | chr5.4:64295687-64295706 | MS.gene80631:intron | 50.0% |
| !! | GATCGTACGGGTTAGATGCA+AGG | + | chr5.4:64296611-64296630 | None:intergenic | 50.0% |
| !!! | GGGAGGAAGCACCTAGTTTT+AGG | + | chr5.4:64296273-64296292 | None:intergenic | 50.0% |
| AATTTCCCAGCCCTCCACCA+TGG | + | chr5.4:64296040-64296059 | None:intergenic | 55.0% | |
| AGAGTTTGTGGCAGGGGAAG+GGG | - | chr5.4:64295531-64295550 | MS.gene80631:intron | 55.0% | |
| ATCTCACGGTGGCCCATCAA+AGG | + | chr5.4:64296575-64296594 | None:intergenic | 55.0% | |
| ATGGGCCACCGTGAGATGAT+TGG | - | chr5.4:64296578-64296597 | MS.gene80631:intron | 55.0% | |
| ATTTCCCAGCCCTCCACCAT+GGG | + | chr5.4:64296039-64296058 | None:intergenic | 55.0% | |
| CAATATGTGGCAGCTGTGGG+AGG | - | chr5.4:64295445-64295464 | MS.gene80631:intron | 55.0% | |
| CAGAGTTTGTGGCAGGGGAA+GGG | - | chr5.4:64295530-64295549 | MS.gene80631:intron | 55.0% | |
| CGACTCCAATCATCTCACGG+TGG | + | chr5.4:64296586-64296605 | None:intergenic | 55.0% | |
| GACCTCAGAGTTTGTGGCAG+GGG | - | chr5.4:64295525-64295544 | MS.gene80631:intron | 55.0% | |
| GGACCTCAGAGTTTGTGGCA+GGG | - | chr5.4:64295524-64295543 | MS.gene80631:intron | 55.0% | |
| GGCCCATCAAAGGGATTGGA+AGG | + | chr5.4:64296565-64296584 | None:intergenic | 55.0% | |
| TCAGAGTTTGTGGCAGGGGA+AGG | - | chr5.4:64295529-64295548 | MS.gene80631:intron | 55.0% | |
| TCTCACGGTGGCCCATCAAA+GGG | + | chr5.4:64296574-64296593 | None:intergenic | 55.0% | |
| TGGACTCAATCCCATGGTGG+AGG | - | chr5.4:64296026-64296045 | MS.gene80631:intron | 55.0% | |
| TTCCCCTGCCACAAACTCTG+AGG | + | chr5.4:64295530-64295549 | None:intergenic | 55.0% | |
| ! | ATGCTTCTAGGGGTCCACCT+AGG | - | chr5.4:64295740-64295759 | MS.gene80631:intron | 55.0% |
| ! | GGACTCAATCCCATGGTGGA+GGG | - | chr5.4:64296027-64296046 | MS.gene80631:intron | 55.0% |
| ! | GGCCGACTCCAATCATCTCA+CGG | + | chr5.4:64296589-64296608 | None:intergenic | 55.0% |
| ! | TGGCTTGGAGGCAAACACCT+TGG | - | chr5.4:64295707-64295726 | MS.gene80631:intron | 55.0% |
| CGGTGGCCCATCAAAGGGAT+TGG | + | chr5.4:64296569-64296588 | None:intergenic | 60.0% | |
| GAGTTTGTGGCAGGGGAAGG+GGG | - | chr5.4:64295532-64295551 | MS.gene80631:intron | 60.0% | |
| GGGACCTCAGAGTTTGTGGC+AGG | - | chr5.4:64295523-64295542 | MS.gene80631:intron | 60.0% | |
| ! | CAATCCCATGGTGGAGGGCT+GGG | - | chr5.4:64296032-64296051 | MS.gene80631:intron | 60.0% |
| ! | TCAATCCCATGGTGGAGGGC+TGG | - | chr5.4:64296031-64296050 | MS.gene80631:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 64294825 | 64297682 | 64294825 | ID=MS.gene80631 |
| chr5.4 | mRNA | 64294825 | 64297682 | 64294825 | ID=MS.gene80631.t1;Parent=MS.gene80631 |
| chr5.4 | exon | 64297404 | 64297682 | 64297404 | ID=MS.gene80631.t1.exon1;Parent=MS.gene80631.t1 |
| chr5.4 | CDS | 64297404 | 64297682 | 64297404 | ID=cds.MS.gene80631.t1;Parent=MS.gene80631.t1 |
| chr5.4 | exon | 64296724 | 64297092 | 64296724 | ID=MS.gene80631.t1.exon2;Parent=MS.gene80631.t1 |
| chr5.4 | CDS | 64296724 | 64297092 | 64296724 | ID=cds.MS.gene80631.t1;Parent=MS.gene80631.t1 |
| chr5.4 | exon | 64294825 | 64295445 | 64294825 | ID=MS.gene80631.t1.exon3;Parent=MS.gene80631.t1 |
| chr5.4 | CDS | 64294825 | 64295445 | 64294825 | ID=cds.MS.gene80631.t1;Parent=MS.gene80631.t1 |
| Gene Sequence |
| Protein sequence |
