Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90704.t1 | XP_013466135.1 | 98.5 | 134 | 2 | 0 | 1 | 134 | 1 | 134 | 1.60E-71 | 278.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90704.t1 | Q9FWS4 | 57.5 | 146 | 48 | 3 | 1 | 134 | 1 | 144 | 8.4e-40 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90704.t1 | G8A1R6 | 98.5 | 134 | 2 | 0 | 1 | 134 | 1 | 134 | 1.2e-71 | 278.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene90704 | 0.812699 | 3.72E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene90704 | 0.814685 | 1.36E-51 | -1.69E-46 |
| MS.gene049195 | MS.gene90704 | 0.800651 | 1.30E-48 | -1.69E-46 |
| MS.gene049260 | MS.gene90704 | 0.821472 | 3.97E-53 | -1.69E-46 |
| MS.gene04933 | MS.gene90704 | 0.808931 | 2.43E-50 | -1.69E-46 |
| MS.gene049346 | MS.gene90704 | 0.84006 | 1.09E-57 | -1.69E-46 |
| MS.gene049351 | MS.gene90704 | 0.824317 | 8.62E-54 | -1.69E-46 |
| MS.gene049378 | MS.gene90704 | 0.840213 | 9.95E-58 | -1.69E-46 |
| MS.gene049599 | MS.gene90704 | -0.815905 | 7.27E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene90704 | 0.801538 | 8.59E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene90704 | 0.923733 | 1.80E-89 | -1.69E-46 |
| MS.gene049910 | MS.gene90704 | 0.839254 | 1.77E-57 | -1.69E-46 |
| MS.gene049915 | MS.gene90704 | 0.822451 | 2.35E-53 | -1.69E-46 |
| MS.gene050099 | MS.gene90704 | 0.819264 | 1.27E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene90704 | 0.811122 | 8.20E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene90704 | 0.810469 | 1.14E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene90704 | 0.81136 | 7.28E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene90704 | 0.809898 | 1.51E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene90704 | 0.86589 | 4.25E-65 | -1.69E-46 |
| MS.gene050319 | MS.gene90704 | -0.808506 | 2.99E-50 | -1.69E-46 |
| MS.gene050330 | MS.gene90704 | -0.832841 | 7.51E-56 | -1.69E-46 |
| MS.gene050397 | MS.gene90704 | 0.835468 | 1.65E-56 | -1.69E-46 |
| MS.gene050438 | MS.gene90704 | 0.81392 | 2.00E-51 | -1.69E-46 |
| MS.gene050464 | MS.gene90704 | 0.845001 | 5.33E-59 | -1.69E-46 |
| MS.gene050529 | MS.gene90704 | 0.83483 | 2.39E-56 | -1.69E-46 |
| MS.gene050558 | MS.gene90704 | 0.840134 | 1.04E-57 | -1.69E-46 |
| MS.gene050623 | MS.gene90704 | -0.835328 | 1.79E-56 | -1.69E-46 |
| MS.gene050642 | MS.gene90704 | 0.855552 | 5.84E-62 | -1.69E-46 |
| MS.gene050670 | MS.gene90704 | 0.813498 | 2.48E-51 | -1.69E-46 |
| MS.gene050820 | MS.gene90704 | 0.813249 | 2.82E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene90704 | 0.820968 | 5.18E-53 | -1.69E-46 |
| MS.gene05119 | MS.gene90704 | -0.851138 | 1.08E-60 | -1.69E-46 |
| MS.gene051471 | MS.gene90704 | 0.830136 | 3.48E-55 | -1.69E-46 |
| MS.gene051582 | MS.gene90704 | 0.862107 | 6.41E-64 | -1.69E-46 |
| MS.gene051662 | MS.gene90704 | 0.842938 | 1.90E-58 | -1.69E-46 |
| MS.gene051663 | MS.gene90704 | 0.854219 | 1.42E-61 | -1.69E-46 |
| MS.gene051860 | MS.gene90704 | 0.856056 | 4.16E-62 | -1.69E-46 |
| MS.gene051983 | MS.gene90704 | 0.854733 | 1.01E-61 | -1.69E-46 |
| MS.gene052011 | MS.gene90704 | -0.81893 | 1.52E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene90704 | 0.847258 | 1.30E-59 | -1.69E-46 |
| MS.gene052078 | MS.gene90704 | 0.837945 | 3.85E-57 | -1.69E-46 |
| MS.gene052176 | MS.gene90704 | 0.813308 | 2.73E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene90704 | 0.843533 | 1.32E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene90704 | 0.826058 | 3.34E-54 | -1.69E-46 |
| MS.gene052207 | MS.gene90704 | 0.818571 | 1.83E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene90704 | 0.820608 | 6.27E-53 | -1.69E-46 |
| MS.gene052309 | MS.gene90704 | -0.806646 | 7.43E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene90704 | 0.810388 | 1.18E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene90704 | 0.822706 | 2.05E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene90704 | 0.811013 | 8.66E-51 | -1.69E-46 |
| MS.gene052600 | MS.gene90704 | 0.803171 | 3.96E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene90704 | 0.813976 | 1.95E-51 | -1.69E-46 |
| MS.gene053557 | MS.gene90704 | 0.823057 | 1.70E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene90704 | 0.918911 | 8.68E-87 | -1.69E-46 |
| MS.gene053907 | MS.gene90704 | 0.831406 | 1.70E-55 | -1.69E-46 |
| MS.gene053928 | MS.gene90704 | 0.834231 | 3.38E-56 | -1.69E-46 |
| MS.gene054011 | MS.gene90704 | 0.812653 | 3.81E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene90704 | 0.815455 | 9.17E-52 | -1.69E-46 |
| MS.gene054473 | MS.gene90704 | 0.843384 | 1.45E-58 | -1.69E-46 |
| MS.gene054542 | MS.gene90704 | 0.807104 | 5.95E-50 | -1.69E-46 |
| MS.gene054667 | MS.gene90704 | 0.803676 | 3.11E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene90704 | 0.857707 | 1.36E-62 | -1.69E-46 |
| MS.gene054942 | MS.gene90704 | 0.841913 | 3.56E-58 | -1.69E-46 |
| MS.gene054983 | MS.gene90704 | 0.837361 | 5.44E-57 | -1.69E-46 |
| MS.gene055116 | MS.gene90704 | 0.814411 | 1.56E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene90704 | 0.872229 | 3.73E-67 | -1.69E-46 |
| MS.gene055390 | MS.gene90704 | 0.831364 | 1.74E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene90704 | 0.891832 | 2.77E-74 | -1.69E-46 |
| MS.gene055428 | MS.gene90704 | 0.871661 | 5.76E-67 | -1.69E-46 |
| MS.gene05553 | MS.gene90704 | 0.829227 | 5.79E-55 | -1.69E-46 |
| MS.gene055564 | MS.gene90704 | 0.8281 | 1.08E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene90704 | 0.828953 | 6.75E-55 | -1.69E-46 |
| MS.gene055712 | MS.gene90704 | 0.883122 | 5.86E-71 | -1.69E-46 |
| MS.gene055859 | MS.gene90704 | 0.84098 | 6.27E-58 | -1.69E-46 |
| MS.gene056407 | MS.gene90704 | 0.846119 | 2.65E-59 | -1.69E-46 |
| MS.gene056612 | MS.gene90704 | 0.861379 | 1.07E-63 | -1.69E-46 |
| MS.gene056723 | MS.gene90704 | 0.819456 | 1.15E-52 | -1.69E-46 |
| MS.gene056875 | MS.gene90704 | 0.810231 | 1.28E-50 | -1.69E-46 |
| MS.gene056899 | MS.gene90704 | -0.811571 | 6.55E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene90704 | 0.853507 | 2.28E-61 | -1.69E-46 |
| MS.gene05702 | MS.gene90704 | 0.833353 | 5.60E-56 | -1.69E-46 |
| MS.gene057121 | MS.gene90704 | 0.881914 | 1.61E-70 | -1.69E-46 |
| MS.gene057245 | MS.gene90704 | 0.855373 | 6.59E-62 | -1.69E-46 |
| MS.gene057260 | MS.gene90704 | 0.813905 | 2.02E-51 | -1.69E-46 |
| MS.gene057439 | MS.gene90704 | 0.85698 | 2.23E-62 | -1.69E-46 |
| MS.gene057448 | MS.gene90704 | 0.826223 | 3.05E-54 | -1.69E-46 |
| MS.gene057449 | MS.gene90704 | 0.814663 | 1.37E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene90704 | 0.830113 | 3.52E-55 | -1.69E-46 |
| MS.gene057469 | MS.gene90704 | 0.829323 | 5.49E-55 | -1.69E-46 |
| MS.gene058002 | MS.gene90704 | 0.877232 | 7.41E-69 | -1.69E-46 |
| MS.gene05811 | MS.gene90704 | 0.878998 | 1.78E-69 | -1.69E-46 |
| MS.gene058142 | MS.gene90704 | 0.844032 | 9.72E-59 | -1.69E-46 |
| MS.gene058233 | MS.gene90704 | 0.815078 | 1.11E-51 | -1.69E-46 |
| MS.gene058276 | MS.gene90704 | 0.8325 | 9.12E-56 | -1.69E-46 |
| MS.gene058660 | MS.gene90704 | 0.82338 | 1.43E-53 | -1.69E-46 |
| MS.gene058710 | MS.gene90704 | 0.836602 | 8.50E-57 | -1.69E-46 |
| MS.gene058749 | MS.gene90704 | 0.81931 | 1.24E-52 | -1.69E-46 |
| MS.gene058845 | MS.gene90704 | 0.846356 | 2.29E-59 | -1.69E-46 |
| MS.gene05886 | MS.gene90704 | 0.850881 | 1.27E-60 | -1.69E-46 |
| MS.gene059033 | MS.gene90704 | -0.828748 | 7.57E-55 | -1.69E-46 |
| MS.gene05907 | MS.gene90704 | 0.86671 | 2.34E-65 | -1.69E-46 |
| MS.gene059228 | MS.gene90704 | 0.805472 | 1.31E-49 | -1.69E-46 |
| MS.gene059247 | MS.gene90704 | 0.834042 | 3.77E-56 | -1.69E-46 |
| MS.gene059420 | MS.gene90704 | 0.813983 | 1.94E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene90704 | 0.84912 | 3.97E-60 | -1.69E-46 |
| MS.gene059676 | MS.gene90704 | 0.808318 | 3.28E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene90704 | 0.809572 | 1.77E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene90704 | 0.819442 | 1.16E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene90704 | 0.813153 | 2.96E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene90704 | 0.883429 | 4.52E-71 | -1.69E-46 |
| MS.gene059894 | MS.gene90704 | 0.857061 | 2.11E-62 | -1.69E-46 |
| MS.gene059899 | MS.gene90704 | 0.840819 | 6.91E-58 | -1.69E-46 |
| MS.gene06037 | MS.gene90704 | 0.834921 | 2.27E-56 | -1.69E-46 |
| MS.gene060476 | MS.gene90704 | 0.808843 | 2.54E-50 | -1.69E-46 |
| MS.gene060480 | MS.gene90704 | 0.813172 | 2.93E-51 | -1.69E-46 |
| MS.gene060994 | MS.gene90704 | 0.80986 | 1.54E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene90704 | 0.807653 | 4.55E-50 | -1.69E-46 |
| MS.gene061002 | MS.gene90704 | 0.823026 | 1.73E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene90704 | 0.880628 | 4.69E-70 | -1.69E-46 |
| MS.gene061114 | MS.gene90704 | -0.806994 | 6.28E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene90704 | 0.811524 | 6.71E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene90704 | 0.806641 | 7.45E-50 | -1.69E-46 |
| MS.gene061265 | MS.gene90704 | 0.800798 | 1.22E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90704.t1 | MTR_1g022450 | 98.507 | 134 | 2 | 0 | 1 | 134 | 1 | 134 | 1.81e-96 | 273 |
| MS.gene90704.t1 | MTR_1g022450 | 97.059 | 136 | 2 | 1 | 1 | 134 | 1 | 136 | 1.30e-94 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90704.t1 | AT1G75350 | 59.398 | 133 | 42 | 2 | 1 | 121 | 1 | 133 | 1.76e-52 | 162 |
Find 33 sgRNAs with CRISPR-Local
Find 55 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAACCACATACTCTTTC+TGG | 0.120517 | 1.4:+1797878 | None:intergenic |
| TTAGCATCTTCGTAGAATTT+TGG | 0.129378 | 1.4:+1797943 | None:intergenic |
| ATGGAGATTCCTGTGCTTAA+AGG | 0.247138 | 1.4:-1797748 | MS.gene90704:CDS |
| CGGTGAATTGTCGCAGATTA+TGG | 0.250630 | 1.4:-1797767 | MS.gene90704:CDS |
| GGAAAGAAAGTGGGCAATTT+CGG | 0.276920 | 1.4:-1797994 | MS.gene90704:CDS |
| AGGTAACAGGTCTGCTCTTA+TGG | 0.321423 | 1.4:-1797827 | MS.gene90704:CDS |
| GACCTGTTACCTAGGTAAAA+TGG | 0.333258 | 1.4:+1797838 | None:intergenic |
| TTAATCCCTTTACGTCTAGA+AGG | 0.369196 | 1.4:+1797712 | None:intergenic |
| TTATTCCTTCTAGACGTAAA+GGG | 0.415844 | 1.4:-1797717 | MS.gene90704:CDS |
| ATCAACCACATACTCTTTCT+GGG | 0.433365 | 1.4:+1797879 | None:intergenic |
| ATAACCAATACCTTTGTTCA+AGG | 0.436471 | 1.4:-1798382 | MS.gene90704:CDS |
| GTTATTCCTTCTAGACGTAA+AGG | 0.445368 | 1.4:-1797718 | MS.gene90704:CDS |
| TATGTGGTTGATGTTTGGTC+TGG | 0.461863 | 1.4:-1797868 | MS.gene90704:CDS |
| TCTTATGGTGAGTGATGATC+AGG | 0.479241 | 1.4:-1797812 | MS.gene90704:CDS |
| AAGAGTATGTGGTTGATGTT+TGG | 0.479372 | 1.4:-1797873 | MS.gene90704:CDS |
| GAGAAGTTTCGTAAGAAGTT+CGG | 0.493517 | 1.4:-1797787 | MS.gene90704:CDS |
| AACGAGCTTGTGATGACAAC+TGG | 0.499125 | 1.4:-1797907 | MS.gene90704:CDS |
| ATGTGGTTGATGTTTGGTCT+GGG | 0.499973 | 1.4:-1797867 | MS.gene90704:CDS |
| TTTGTGGGAAGTGGAAGGAA+TGG | 0.505762 | 1.4:+1798355 | None:intergenic |
| TAAGAGCAGACCTGTTACCT+AGG | 0.535799 | 1.4:+1797830 | None:intergenic |
| AAAGGGATTAAAAGTGGTGG+AGG | 0.538533 | 1.4:-1797700 | MS.gene90704:CDS |
| AAAATTCTACGAAGATGCTA+AGG | 0.547901 | 1.4:-1797941 | MS.gene90704:CDS |
| ACAATCTCACCTTTAAGCAC+AGG | 0.575557 | 1.4:+1797739 | None:intergenic |
| GAATCAACAAGGAAAGAAAG+TGG | 0.577082 | 1.4:-1798004 | MS.gene90704:CDS |
| AGACGTAAAGGGATTAAAAG+TGG | 0.579688 | 1.4:-1797706 | MS.gene90704:CDS |
| CGTAAAGGGATTAAAAGTGG+TGG | 0.606986 | 1.4:-1797703 | MS.gene90704:CDS |
| GTTTGGTTGCAGAATCAACA+AGG | 0.616245 | 1.4:-1798015 | MS.gene90704:intron |
| AATCAACAAGGAAAGAAAGT+GGG | 0.633997 | 1.4:-1798003 | MS.gene90704:CDS |
| AAGGGATTAAAAGTGGTGGA+GGG | 0.644540 | 1.4:-1797699 | MS.gene90704:CDS |
| TGTTACCTAGGTAAAATGGA+TGG | 0.664203 | 1.4:+1797842 | None:intergenic |
| TGGAACCCAGAAAGAGTATG+TGG | 0.674951 | 1.4:-1797884 | MS.gene90704:CDS |
| GAGCTTGTGATGACAACTGG+TGG | 0.675964 | 1.4:-1797904 | MS.gene90704:CDS |
| TATGGTGAGTGATGATCAGG+TGG | 0.684535 | 1.4:-1797809 | MS.gene90704:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTAATTTCCTAAAT+AGG | - | chr1.4:1797868-1797887 | MS.gene90704:CDS | 10.0% |
| !! | ATATTCTAATAGAAATGATA+AGG | + | chr1.4:1797778-1797797 | None:intergenic | 15.0% |
| !! | GAAACAATAATATGAATAAT+TGG | + | chr1.4:1797994-1798013 | None:intergenic | 15.0% |
| !! | AACAAAACAAAAAAACATGT+TGG | + | chr1.4:1798030-1798049 | None:intergenic | 20.0% |
| !! | AATATGTCTATATTAGAATC+AGG | + | chr1.4:1797961-1797980 | None:intergenic | 20.0% |
| !! | ATATGTCTATATTAGAATCA+GGG | + | chr1.4:1797960-1797979 | None:intergenic | 20.0% |
| ! | AACTGTTTACAAACCTATTT+AGG | + | chr1.4:1797884-1797903 | None:intergenic | 25.0% |
| ! | CAAATGATATCAATACAATC+AGG | - | chr1.4:1797917-1797936 | MS.gene90704:CDS | 25.0% |
| ! | TAATAGAAATGATAAGGAAG+TGG | + | chr1.4:1797772-1797791 | None:intergenic | 25.0% |
| AAAATTCTACGAAGATGCTA+AGG | - | chr1.4:1798140-1798159 | MS.gene90704:intron | 30.0% | |
| AATCAACAAGGAAAGAAAGT+GGG | - | chr1.4:1798078-1798097 | MS.gene90704:intron | 30.0% | |
| ATAACCAATACCTTTGTTCA+AGG | - | chr1.4:1797699-1797718 | MS.gene90704:CDS | 30.0% | |
| TTATTCCTTCTAGACGTAAA+GGG | - | chr1.4:1798364-1798383 | MS.gene90704:CDS | 30.0% | |
| TTCTCATGAATTGTGATTCA+TGG | + | chr1.4:1797849-1797868 | None:intergenic | 30.0% | |
| ! | TAGCATCTTCGTAGAATTTT+GGG | + | chr1.4:1798140-1798159 | None:intergenic | 30.0% |
| ! | TTAGCATCTTCGTAGAATTT+TGG | + | chr1.4:1798141-1798160 | None:intergenic | 30.0% |
| ! | TTTTTGTGTGTGTTTGTGTT+TGG | - | chr1.4:1798049-1798068 | MS.gene90704:intron | 30.0% |
| !! | TTTTCCTTGAACAAAGGTAT+TGG | + | chr1.4:1797706-1797725 | None:intergenic | 30.0% |
| !!! | TACTACAGTACGTTTTTTGT+GGG | + | chr1.4:1797744-1797763 | None:intergenic | 30.0% |
| !!! | TTACTACAGTACGTTTTTTG+TGG | + | chr1.4:1797745-1797764 | None:intergenic | 30.0% |
| AGAAATGATAAGGAAGTGGT+TGG | + | chr1.4:1797768-1797787 | None:intergenic | 35.0% | |
| AGACGTAAAGGGATTAAAAG+TGG | - | chr1.4:1798375-1798394 | MS.gene90704:CDS | 35.0% | |
| ATCAACCACATACTCTTTCT+GGG | + | chr1.4:1798205-1798224 | None:intergenic | 35.0% | |
| GAATCAACAAGGAAAGAAAG+TGG | - | chr1.4:1798077-1798096 | MS.gene90704:intron | 35.0% | |
| GAGAAGTTTCGTAAGAAGTT+CGG | - | chr1.4:1798294-1798313 | MS.gene90704:intron | 35.0% | |
| GTTATTCCTTCTAGACGTAA+AGG | - | chr1.4:1798363-1798382 | MS.gene90704:CDS | 35.0% | |
| TGTGATTCATGGCTAATGAA+TGG | + | chr1.4:1797838-1797857 | None:intergenic | 35.0% | |
| TGTTACCTAGGTAAAATGGA+TGG | + | chr1.4:1798242-1798261 | None:intergenic | 35.0% | |
| TTAATCCCTTTACGTCTAGA+AGG | + | chr1.4:1798372-1798391 | None:intergenic | 35.0% | |
| ! | AAGAGTATGTGGTTGATGTT+TGG | - | chr1.4:1798208-1798227 | MS.gene90704:intron | 35.0% |
| ! | ATCCATTTTACCTAGGTAAC+AGG | - | chr1.4:1798241-1798260 | MS.gene90704:intron | 35.0% |
| ! | GAATGGTTTTCCTTGAACAA+AGG | + | chr1.4:1797712-1797731 | None:intergenic | 35.0% |
| AAAGGGATTAAAAGTGGTGG+AGG | - | chr1.4:1798381-1798400 | MS.gene90704:CDS | 40.0% | |
| ACAATCTCACCTTTAAGCAC+AGG | + | chr1.4:1798345-1798364 | None:intergenic | 40.0% | |
| ATGGAGATTCCTGTGCTTAA+AGG | - | chr1.4:1798333-1798352 | MS.gene90704:intron | 40.0% | |
| CATCAACCACATACTCTTTC+TGG | + | chr1.4:1798206-1798225 | None:intergenic | 40.0% | |
| CGTAAAGGGATTAAAAGTGG+TGG | - | chr1.4:1798378-1798397 | MS.gene90704:CDS | 40.0% | |
| GACCTGTTACCTAGGTAAAA+TGG | + | chr1.4:1798246-1798265 | None:intergenic | 40.0% | |
| GGAAAGAAAGTGGGCAATTT+CGG | - | chr1.4:1798087-1798106 | MS.gene90704:intron | 40.0% | |
| GTTTGGTTGCAGAATCAACA+AGG | - | chr1.4:1798066-1798085 | MS.gene90704:intron | 40.0% | |
| TCTTATGGTGAGTGATGATC+AGG | - | chr1.4:1798269-1798288 | MS.gene90704:intron | 40.0% | |
| ! | AAGGGATTAAAAGTGGTGGA+GGG | - | chr1.4:1798382-1798401 | MS.gene90704:CDS | 40.0% |
| ! | ATGTGGTTGATGTTTGGTCT+GGG | - | chr1.4:1798214-1798233 | MS.gene90704:intron | 40.0% |
| ! | TATGTGGTTGATGTTTGGTC+TGG | - | chr1.4:1798213-1798232 | MS.gene90704:intron | 40.0% |
| !!! | AGTACGTTTTTTGTGGGAAG+TGG | + | chr1.4:1797738-1797757 | None:intergenic | 40.0% |
| AACGAGCTTGTGATGACAAC+TGG | - | chr1.4:1798174-1798193 | MS.gene90704:intron | 45.0% | |
| AGGTAACAGGTCTGCTCTTA+TGG | - | chr1.4:1798254-1798273 | MS.gene90704:intron | 45.0% | |
| CGGTGAATTGTCGCAGATTA+TGG | - | chr1.4:1798314-1798333 | MS.gene90704:intron | 45.0% | |
| TAAGAGCAGACCTGTTACCT+AGG | + | chr1.4:1798254-1798273 | None:intergenic | 45.0% | |
| TATGGTGAGTGATGATCAGG+TGG | - | chr1.4:1798272-1798291 | MS.gene90704:intron | 45.0% | |
| TTTGTGGGAAGTGGAAGGAA+TGG | + | chr1.4:1797729-1797748 | None:intergenic | 45.0% | |
| ! | GGGAACCATCCATTTTACCT+AGG | - | chr1.4:1798234-1798253 | MS.gene90704:intron | 45.0% |
| ! | TGGAACCCAGAAAGAGTATG+TGG | - | chr1.4:1798197-1798216 | MS.gene90704:intron | 45.0% |
| !!! | CGTTTTTTGTGGGAAGTGGA+AGG | + | chr1.4:1797734-1797753 | None:intergenic | 45.0% |
| GAGCTTGTGATGACAACTGG+TGG | - | chr1.4:1798177-1798196 | MS.gene90704:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 1797687 | 1798416 | 1797687 | ID=MS.gene90704 |
| chr1.4 | mRNA | 1797687 | 1798416 | 1797687 | ID=MS.gene90704.t1;Parent=MS.gene90704 |
| chr1.4 | exon | 1798351 | 1798416 | 1798351 | ID=MS.gene90704.t1.exon1;Parent=MS.gene90704.t1 |
| chr1.4 | CDS | 1798351 | 1798416 | 1798351 | ID=cds.MS.gene90704.t1;Parent=MS.gene90704.t1 |
| chr1.4 | exon | 1797687 | 1798025 | 1797687 | ID=MS.gene90704.t1.exon2;Parent=MS.gene90704.t1 |
| chr1.4 | CDS | 1797687 | 1798025 | 1797687 | ID=cds.MS.gene90704.t1;Parent=MS.gene90704.t1 |
| Gene Sequence |
| Protein sequence |
