Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50644.t1 | XP_013468480.1 | 85.4 | 371 | 54 | 0 | 1 | 371 | 1 | 371 | 1.90E-165 | 592 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50644.t1 | Q94K75 | 37.1 | 418 | 189 | 15 | 1 | 368 | 3 | 396 | 5.0e-34 | 146.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50644.t1 | A0A072VL21 | 85.4 | 371 | 54 | 0 | 1 | 371 | 1 | 371 | 1.3e-165 | 592.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene50644 | 0.80634 | 8.62E-50 | -1.69E-46 |
| MS.gene049150 | MS.gene50644 | 0.867269 | 1.55E-65 | -1.69E-46 |
| MS.gene049151 | MS.gene50644 | 0.84671 | 1.83E-59 | -1.69E-46 |
| MS.gene049153 | MS.gene50644 | 0.870121 | 1.85E-66 | -1.69E-46 |
| MS.gene049195 | MS.gene50644 | 0.807366 | 5.23E-50 | -1.69E-46 |
| MS.gene049260 | MS.gene50644 | 0.84809 | 7.65E-60 | -1.69E-46 |
| MS.gene049284 | MS.gene50644 | 0.802071 | 6.67E-49 | -1.69E-46 |
| MS.gene049297 | MS.gene50644 | 0.879183 | 1.53E-69 | -1.69E-46 |
| MS.gene04933 | MS.gene50644 | 0.824149 | 9.44E-54 | -1.69E-46 |
| MS.gene049346 | MS.gene50644 | 0.814338 | 1.62E-51 | -1.69E-46 |
| MS.gene049351 | MS.gene50644 | 0.832006 | 1.21E-55 | -1.69E-46 |
| MS.gene049378 | MS.gene50644 | 0.825114 | 5.59E-54 | -1.69E-46 |
| MS.gene049389 | MS.gene50644 | 0.812601 | 3.91E-51 | -1.69E-46 |
| MS.gene049426 | MS.gene50644 | 0.811443 | 6.98E-51 | -1.69E-46 |
| MS.gene049491 | MS.gene50644 | 0.827564 | 1.46E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene50644 | 0.899599 | 1.69E-77 | -1.69E-46 |
| MS.gene049910 | MS.gene50644 | 0.86127 | 1.15E-63 | -1.69E-46 |
| MS.gene049915 | MS.gene50644 | 0.833826 | 4.27E-56 | -1.69E-46 |
| MS.gene050099 | MS.gene50644 | 0.865976 | 3.99E-65 | -1.69E-46 |
| MS.gene050128 | MS.gene50644 | 0.801386 | 9.23E-49 | -1.69E-46 |
| MS.gene050168 | MS.gene50644 | 0.810269 | 1.25E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene50644 | 0.856859 | 2.42E-62 | -1.69E-46 |
| MS.gene050227 | MS.gene50644 | 0.864367 | 1.28E-64 | -1.69E-46 |
| MS.gene050228 | MS.gene50644 | 0.856993 | 2.21E-62 | -1.69E-46 |
| MS.gene050231 | MS.gene50644 | 0.814123 | 1.81E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene50644 | 0.892677 | 1.27E-74 | -1.69E-46 |
| MS.gene050319 | MS.gene50644 | -0.821376 | 4.17E-53 | -1.69E-46 |
| MS.gene050330 | MS.gene50644 | -0.843824 | 1.10E-58 | -1.69E-46 |
| MS.gene050397 | MS.gene50644 | 0.843273 | 1.55E-58 | -1.69E-46 |
| MS.gene050426 | MS.gene50644 | -0.816483 | 5.40E-52 | -1.69E-46 |
| MS.gene050438 | MS.gene50644 | 0.803048 | 4.20E-49 | -1.69E-46 |
| MS.gene050464 | MS.gene50644 | 0.86155 | 9.48E-64 | -1.69E-46 |
| MS.gene050529 | MS.gene50644 | 0.858919 | 5.92E-63 | -1.69E-46 |
| MS.gene050558 | MS.gene50644 | 0.873881 | 1.04E-67 | -1.69E-46 |
| MS.gene050560 | MS.gene50644 | 0.812196 | 4.79E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene50644 | -0.860424 | 2.09E-63 | -1.69E-46 |
| MS.gene050642 | MS.gene50644 | 0.898443 | 5.28E-77 | -1.69E-46 |
| MS.gene050650 | MS.gene50644 | 0.822541 | 2.24E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene50644 | 0.821947 | 3.08E-53 | -1.69E-46 |
| MS.gene050787 | MS.gene50644 | 0.818109 | 2.33E-52 | -1.69E-46 |
| MS.gene050820 | MS.gene50644 | 0.83671 | 7.98E-57 | -1.69E-46 |
| MS.gene05101 | MS.gene50644 | 0.837168 | 6.09E-57 | -1.69E-46 |
| MS.gene05119 | MS.gene50644 | -0.830224 | 3.31E-55 | -1.69E-46 |
| MS.gene051257 | MS.gene50644 | 0.821265 | 4.43E-53 | -1.69E-46 |
| MS.gene051471 | MS.gene50644 | 0.83774 | 4.35E-57 | -1.69E-46 |
| MS.gene051525 | MS.gene50644 | 0.810256 | 1.26E-50 | -1.69E-46 |
| MS.gene051582 | MS.gene50644 | 0.836003 | 1.21E-56 | -1.69E-46 |
| MS.gene051662 | MS.gene50644 | 0.870544 | 1.35E-66 | -1.69E-46 |
| MS.gene051663 | MS.gene50644 | 0.89694 | 2.28E-76 | -1.69E-46 |
| MS.gene051860 | MS.gene50644 | 0.907477 | 4.86E-81 | -1.69E-46 |
| MS.gene051983 | MS.gene50644 | 0.886072 | 4.70E-72 | -1.69E-46 |
| MS.gene052011 | MS.gene50644 | -0.833727 | 4.52E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene50644 | 0.866053 | 3.78E-65 | -1.69E-46 |
| MS.gene052078 | MS.gene50644 | 0.866305 | 3.14E-65 | -1.69E-46 |
| MS.gene052176 | MS.gene50644 | 0.812337 | 4.46E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene50644 | 0.850807 | 1.34E-60 | -1.69E-46 |
| MS.gene052188 | MS.gene50644 | 0.881057 | 3.29E-70 | -1.69E-46 |
| MS.gene052207 | MS.gene50644 | 0.821814 | 3.31E-53 | -1.69E-46 |
| MS.gene052253 | MS.gene50644 | 0.86179 | 8.01E-64 | -1.69E-46 |
| MS.gene052255 | MS.gene50644 | 0.837438 | 5.20E-57 | -1.69E-46 |
| MS.gene052309 | MS.gene50644 | -0.817502 | 3.19E-52 | -1.69E-46 |
| MS.gene052310 | MS.gene50644 | 0.840761 | 7.16E-58 | -1.69E-46 |
| MS.gene052326 | MS.gene50644 | 0.803055 | 4.18E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene50644 | 0.870412 | 1.49E-66 | -1.69E-46 |
| MS.gene052485 | MS.gene50644 | 0.833395 | 5.47E-56 | -1.69E-46 |
| MS.gene052600 | MS.gene50644 | 0.863088 | 3.19E-64 | -1.69E-46 |
| MS.gene05316 | MS.gene50644 | 0.806929 | 6.48E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene50644 | 0.837665 | 4.55E-57 | -1.69E-46 |
| MS.gene053559 | MS.gene50644 | 0.82802 | 1.13E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene50644 | 0.938505 | 6.03E-99 | -1.69E-46 |
| MS.gene053907 | MS.gene50644 | 0.82658 | 2.51E-54 | -1.69E-46 |
| MS.gene053928 | MS.gene50644 | 0.821231 | 4.51E-53 | -1.69E-46 |
| MS.gene053971 | MS.gene50644 | 0.800332 | 1.51E-48 | -1.69E-46 |
| MS.gene054010 | MS.gene50644 | 0.807883 | 4.07E-50 | -1.69E-46 |
| MS.gene054011 | MS.gene50644 | 0.826535 | 2.57E-54 | -1.69E-46 |
| MS.gene054012 | MS.gene50644 | 0.820686 | 6.01E-53 | -1.69E-46 |
| MS.gene054013 | MS.gene50644 | 0.813522 | 2.45E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene50644 | 0.818715 | 1.70E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene50644 | 0.842483 | 2.52E-58 | -1.69E-46 |
| MS.gene054184 | MS.gene50644 | 0.813692 | 2.25E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene50644 | 0.816926 | 4.30E-52 | -1.69E-46 |
| MS.gene054349 | MS.gene50644 | 0.830207 | 3.34E-55 | -1.69E-46 |
| MS.gene054473 | MS.gene50644 | 0.868537 | 6.07E-66 | -1.69E-46 |
| MS.gene05455 | MS.gene50644 | 0.834108 | 3.63E-56 | -1.69E-46 |
| MS.gene054667 | MS.gene50644 | 0.817449 | 3.28E-52 | -1.69E-46 |
| MS.gene054719 | MS.gene50644 | 0.822729 | 2.03E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene50644 | 0.86826 | 7.45E-66 | -1.69E-46 |
| MS.gene054942 | MS.gene50644 | 0.888657 | 4.86E-73 | -1.69E-46 |
| MS.gene054983 | MS.gene50644 | 0.867437 | 1.37E-65 | -1.69E-46 |
| MS.gene055116 | MS.gene50644 | 0.83177 | 1.38E-55 | -1.69E-46 |
| MS.gene055277 | MS.gene50644 | 0.858621 | 7.26E-63 | -1.69E-46 |
| MS.gene055356 | MS.gene50644 | 0.806245 | 9.03E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene50644 | 0.811808 | 5.82E-51 | -1.69E-46 |
| MS.gene055390 | MS.gene50644 | 0.85701 | 2.18E-62 | -1.69E-46 |
| MS.gene055422 | MS.gene50644 | 0.91148 | 5.80E-83 | -1.69E-46 |
| MS.gene055428 | MS.gene50644 | 0.892117 | 2.13E-74 | -1.69E-46 |
| MS.gene05553 | MS.gene50644 | 0.858264 | 9.28E-63 | -1.69E-46 |
| MS.gene055601 | MS.gene50644 | -0.800811 | 1.21E-48 | -1.69E-46 |
| MS.gene055604 | MS.gene50644 | 0.842564 | 2.39E-58 | -1.69E-46 |
| MS.gene055712 | MS.gene50644 | 0.8437 | 1.19E-58 | -1.69E-46 |
| MS.gene055859 | MS.gene50644 | 0.822855 | 1.89E-53 | -1.69E-46 |
| MS.gene056191 | MS.gene50644 | 0.808767 | 2.63E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene50644 | 0.838333 | 3.06E-57 | -1.69E-46 |
| MS.gene056451 | MS.gene50644 | 0.822027 | 2.95E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene50644 | 0.857354 | 1.73E-62 | -1.69E-46 |
| MS.gene056659 | MS.gene50644 | 0.808206 | 3.47E-50 | -1.69E-46 |
| MS.gene056723 | MS.gene50644 | 0.829228 | 5.79E-55 | -1.69E-46 |
| MS.gene056796 | MS.gene50644 | 0.810131 | 1.34E-50 | -1.69E-46 |
| MS.gene056875 | MS.gene50644 | 0.867305 | 1.51E-65 | -1.69E-46 |
| MS.gene056899 | MS.gene50644 | -0.856135 | 3.95E-62 | -1.69E-46 |
| MS.gene056979 | MS.gene50644 | 0.8816 | 2.10E-70 | -1.69E-46 |
| MS.gene05702 | MS.gene50644 | 0.852832 | 3.56E-61 | -1.69E-46 |
| MS.gene057121 | MS.gene50644 | 0.904299 | 1.42E-79 | -1.69E-46 |
| MS.gene057245 | MS.gene50644 | 0.866823 | 2.15E-65 | -1.69E-46 |
| MS.gene057260 | MS.gene50644 | 0.835316 | 1.80E-56 | -1.69E-46 |
| MS.gene057439 | MS.gene50644 | 0.873433 | 1.48E-67 | -1.69E-46 |
| MS.gene057448 | MS.gene50644 | 0.854392 | 1.27E-61 | -1.69E-46 |
| MS.gene057449 | MS.gene50644 | 0.846279 | 2.40E-59 | -1.69E-46 |
| MS.gene057450 | MS.gene50644 | 0.854196 | 1.45E-61 | -1.69E-46 |
| MS.gene057469 | MS.gene50644 | 0.857959 | 1.14E-62 | -1.69E-46 |
| MS.gene057749 | MS.gene50644 | 0.820023 | 8.54E-53 | -1.69E-46 |
| MS.gene057750 | MS.gene50644 | 0.817319 | 3.51E-52 | -1.69E-46 |
| MS.gene057754 | MS.gene50644 | 0.814971 | 1.17E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene50644 | 0.818126 | 2.31E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene50644 | 0.924753 | 4.62E-90 | -1.69E-46 |
| MS.gene05811 | MS.gene50644 | 0.927566 | 9.83E-92 | -1.69E-46 |
| MS.gene058139 | MS.gene50644 | 0.807828 | 4.18E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene50644 | 0.891022 | 5.80E-74 | -1.69E-46 |
| MS.gene058233 | MS.gene50644 | 0.81373 | 2.21E-51 | -1.69E-46 |
| MS.gene058276 | MS.gene50644 | 0.859502 | 3.96E-63 | -1.69E-46 |
| MS.gene058293 | MS.gene50644 | 0.803038 | 4.22E-49 | -1.69E-46 |
| MS.gene05842 | MS.gene50644 | 0.808509 | 2.99E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene50644 | 0.84901 | 4.25E-60 | -1.69E-46 |
| MS.gene058710 | MS.gene50644 | 0.854145 | 1.50E-61 | -1.69E-46 |
| MS.gene058749 | MS.gene50644 | 0.852017 | 6.08E-61 | -1.69E-46 |
| MS.gene058833 | MS.gene50644 | 0.860813 | 1.59E-63 | -1.69E-46 |
| MS.gene058845 | MS.gene50644 | 0.85597 | 4.41E-62 | -1.69E-46 |
| MS.gene05886 | MS.gene50644 | 0.863796 | 1.93E-64 | -1.69E-46 |
| MS.gene058928 | MS.gene50644 | 0.818153 | 2.27E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene50644 | 0.907029 | 7.88E-81 | -1.69E-46 |
| MS.gene059124 | MS.gene50644 | 0.811381 | 7.20E-51 | -1.69E-46 |
| MS.gene059141 | MS.gene50644 | 0.813519 | 2.46E-51 | -1.69E-46 |
| MS.gene059247 | MS.gene50644 | 0.84611 | 2.67E-59 | -1.69E-46 |
| MS.gene059285 | MS.gene50644 | 0.863428 | 2.51E-64 | -1.69E-46 |
| MS.gene059294 | MS.gene50644 | 0.83759 | 4.75E-57 | -1.69E-46 |
| MS.gene059342 | MS.gene50644 | 0.813857 | 2.07E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene50644 | 0.841351 | 5.01E-58 | -1.69E-46 |
| MS.gene059421 | MS.gene50644 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene50644 | 0.880616 | 4.74E-70 | -1.69E-46 |
| MS.gene059597 | MS.gene50644 | 0.871846 | 5.01E-67 | -1.69E-46 |
| MS.gene059676 | MS.gene50644 | 0.845903 | 3.04E-59 | -1.69E-46 |
| MS.gene059688 | MS.gene50644 | 0.836482 | 9.12E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene50644 | 0.838115 | 3.48E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene50644 | 0.833586 | 4.90E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene50644 | 0.924496 | 6.52E-90 | -1.69E-46 |
| MS.gene059894 | MS.gene50644 | 0.874823 | 5.00E-68 | -1.69E-46 |
| MS.gene059899 | MS.gene50644 | 0.853636 | 2.10E-61 | -1.69E-46 |
| MS.gene06037 | MS.gene50644 | 0.826531 | 2.58E-54 | -1.69E-46 |
| MS.gene060403 | MS.gene50644 | 0.805767 | 1.14E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene50644 | 0.839567 | 1.47E-57 | -1.69E-46 |
| MS.gene060476 | MS.gene50644 | 0.837913 | 3.92E-57 | -1.69E-46 |
| MS.gene06090 | MS.gene50644 | 0.80658 | 7.68E-50 | -1.69E-46 |
| MS.gene060986 | MS.gene50644 | 0.821412 | 4.09E-53 | -1.69E-46 |
| MS.gene060994 | MS.gene50644 | 0.827679 | 1.37E-54 | -1.69E-46 |
| MS.gene061000 | MS.gene50644 | 0.823264 | 1.52E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene50644 | 0.885246 | 9.59E-72 | -1.69E-46 |
| MS.gene061071 | MS.gene50644 | 0.801652 | 8.14E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene50644 | -0.837319 | 5.57E-57 | -1.69E-46 |
| MS.gene061154 | MS.gene50644 | 0.801194 | 1.01E-48 | -1.69E-46 |
| MS.gene061159 | MS.gene50644 | 0.838274 | 3.17E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50644.t1 | MTR_1g069855 | 94.070 | 371 | 22 | 0 | 1 | 371 | 1 | 371 | 0.0 | 705 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50644.t1 | AT1G06190 | 36.806 | 432 | 171 | 14 | 1 | 368 | 3 | 396 | 8.05e-47 | 164 |
| MS.gene50644.t1 | AT1G06190 | 36.597 | 429 | 168 | 15 | 4 | 368 | 11 | 399 | 1.69e-45 | 161 |
| MS.gene50644.t1 | AT1G06190 | 42.960 | 277 | 102 | 10 | 1 | 254 | 3 | 246 | 1.40e-37 | 137 |
| MS.gene50644.t1 | AT1G06190 | 36.223 | 323 | 118 | 8 | 105 | 368 | 1 | 294 | 1.94e-31 | 121 |
| MS.gene50644.t1 | AT1G06190 | 36.223 | 323 | 118 | 8 | 105 | 368 | 1 | 294 | 1.94e-31 | 121 |
| MS.gene50644.t1 | AT2G31150 | 40.526 | 190 | 78 | 8 | 69 | 253 | 28 | 187 | 9.72e-18 | 83.2 |
Find 91 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATCTCCCTTCTTCATTT+TGG | 0.199446 | 1.2:+53102469 | None:intergenic |
| ATTCATTCTCATGTCAAAAT+TGG | 0.207354 | 1.2:-53103403 | MS.gene50644:CDS |
| AGGAGATTGTTGAATTATTT+AGG | 0.215094 | 1.2:-53103144 | MS.gene50644:CDS |
| ATCCACACCCTCATTATTAT+AGG | 0.236533 | 1.2:+53102583 | None:intergenic |
| CACTGAAGATGTCTGAATTA+AGG | 0.272149 | 1.2:-53102526 | MS.gene50644:CDS |
| CAACAGAGTGTTTCTTCAAT+AGG | 0.293426 | 1.2:+53103014 | None:intergenic |
| TTCCCGTGTTCACGTGGTTT+TGG | 0.304722 | 1.2:-53103472 | MS.gene50644:CDS |
| GAATCATCATCAGAAAATTC+AGG | 0.322009 | 1.2:+53102623 | None:intergenic |
| CACGGGAAACACTTGTCTTC+TGG | 0.338216 | 1.2:+53103487 | None:intergenic |
| GTGGAACAGGAGACTTTCTT+TGG | 0.339277 | 1.2:+53102816 | None:intergenic |
| CTTGCAACTGGTCAGAGTTA+AGG | 0.357514 | 1.2:+53102951 | None:intergenic |
| GGTCATCAAGAGGCAGAAAT+AGG | 0.364129 | 1.2:-53103294 | MS.gene50644:CDS |
| CCTGAATTATGCGATACTAA+TGG | 0.364548 | 1.2:+53103205 | None:intergenic |
| CTCATTATTATAGGTTTGTT+CGG | 0.368039 | 1.2:+53102592 | None:intergenic |
| AGAAGCCAACATTGCTTCTT+CGG | 0.370636 | 1.2:-53102858 | MS.gene50644:CDS |
| ATTGGTTACTTTCTTGCAAC+TGG | 0.376988 | 1.2:+53102939 | None:intergenic |
| GCTTCTCGAGACTCGCCCTT+TGG | 0.377737 | 1.2:+53102875 | None:intergenic |
| TCATTATCTTCAGTACCTAT+TGG | 0.378379 | 1.2:+53102743 | None:intergenic |
| CAAGAAAGTAACCAATATAA+TGG | 0.383785 | 1.2:-53102932 | MS.gene50644:CDS |
| ATCTCCTTCTCTCTGGGGCC+AGG | 0.383899 | 1.2:+53103160 | None:intergenic |
| CCATTAGTATCGCATAATTC+AGG | 0.386197 | 1.2:-53103205 | MS.gene50644:CDS |
| TGAAGATAATGAGAACATTC+AGG | 0.393717 | 1.2:-53102732 | MS.gene50644:CDS |
| TCTCCTTCTCTCTGGGGCCA+GGG | 0.398569 | 1.2:+53103161 | None:intergenic |
| ACTGAAGATGTCTGAATTAA+GGG | 0.399378 | 1.2:-53102525 | MS.gene50644:CDS |
| TTCAACAATCTCCTTCTCTC+TGG | 0.400512 | 1.2:+53103153 | None:intergenic |
| TCAATGTCAGACACAAGTTT+AGG | 0.403640 | 1.2:+53102674 | None:intergenic |
| AAAATTGGAGGACTAAAGTA+TGG | 0.407218 | 1.2:-53103388 | MS.gene50644:CDS |
| ATTTCTCAAGGCAAAACAAT+AGG | 0.425700 | 1.2:-53103321 | MS.gene50644:CDS |
| TTGCTTCTTCGGCTCGGCCT+CGG | 0.432797 | 1.2:-53102847 | MS.gene50644:CDS |
| TCTGGGGCCAGGGGATGAAG+TGG | 0.433553 | 1.2:+53103171 | None:intergenic |
| AGTCTCCTGTTCCACGTGTT+AGG | 0.449557 | 1.2:-53102808 | MS.gene50644:CDS |
| CTCCTTCTCTCTGGGGCCAG+GGG | 0.453590 | 1.2:+53103162 | None:intergenic |
| GAGATACTAACCAACGTTGT+TGG | 0.460708 | 1.2:+53105140 | None:intergenic |
| GATACTAATGCAATACCAAT+AGG | 0.463250 | 1.2:-53102758 | MS.gene50644:CDS |
| CCAGCCTCTCTCTAATAACT+TGG | 0.465102 | 1.2:-53102783 | MS.gene50644:CDS |
| CATTCTCATGTCAAAATTGG+AGG | 0.466208 | 1.2:-53103400 | MS.gene50644:CDS |
| TGGTACCTAACACGTGGAAC+AGG | 0.468633 | 1.2:+53102803 | None:intergenic |
| GCATAATTCAGGAAAATTCC+AGG | 0.470969 | 1.2:-53103194 | MS.gene50644:CDS |
| CCAAGTTATTAGAGAGAGGC+TGG | 0.475081 | 1.2:+53102783 | None:intergenic |
| GGCAGAAATAGGAACGATGA+TGG | 0.476321 | 1.2:-53103283 | MS.gene50644:CDS |
| GTATATTCATGCACTTCTCT+AGG | 0.477464 | 1.2:-53103436 | MS.gene50644:CDS |
| GAGCAAGGAAAGAGAAGTAA+TGG | 0.479561 | 1.2:-53102992 | MS.gene50644:CDS |
| TCAGACACAAGTTTAGGTTC+TGG | 0.480757 | 1.2:+53102680 | None:intergenic |
| TCAACAATCTCCTTCTCTCT+GGG | 0.484672 | 1.2:+53103154 | None:intergenic |
| TTCTGATTCAGGTGCTCCAA+AGG | 0.490898 | 1.2:-53102891 | MS.gene50644:CDS |
| GGCCAGGGGATGAAGTGGCC+TGG | 0.491170 | 1.2:+53103176 | None:intergenic |
| CAAAGTCTCGTGGCGTGAAA+GGG | 0.496245 | 1.2:-53102496 | MS.gene50644:CDS |
| GCAAAGTCTCGTGGCGTGAA+AGG | 0.497859 | 1.2:-53102497 | MS.gene50644:CDS |
| CGAACAAACCTATAATAATG+AGG | 0.509607 | 1.2:-53102591 | MS.gene50644:CDS |
| TTCAAGCTCGGTTGCGTGAG+AGG | 0.514959 | 1.2:-53103117 | MS.gene50644:CDS |
| TTCCAGGCCACTTCATCCCC+TGG | 0.519556 | 1.2:-53103178 | MS.gene50644:CDS |
| AATCATCATCAGAAAATTCA+GGG | 0.519668 | 1.2:+53102624 | None:intergenic |
| AGGGTTCTCCAAAATGAAGA+AGG | 0.519774 | 1.2:-53102477 | MS.gene50644:CDS |
| AACCTATAATAATGAGGGTG+TGG | 0.526342 | 1.2:-53102585 | MS.gene50644:CDS |
| AGAAGTAATGGAGAGGACGA+TGG | 0.534478 | 1.2:-53102980 | MS.gene50644:CDS |
| TCTGATTCAGGTGCTCCAAA+GGG | 0.540137 | 1.2:-53102890 | MS.gene50644:CDS |
| ATCCCCTGGCCCCAGAGAGA+AGG | 0.545660 | 1.2:-53103164 | MS.gene50644:CDS |
| CAAACCAACAATGTCGCAAA+CGG | 0.547964 | 1.2:-53105178 | None:intergenic |
| TCAAGGCAAAACAATAGGCA+TGG | 0.548267 | 1.2:-53103316 | MS.gene50644:CDS |
| CCGAGCCGAAGAAGCAATGT+TGG | 0.549322 | 1.2:+53102853 | None:intergenic |
| AGTGTTTCTTCAATAGGTTG+AGG | 0.554093 | 1.2:+53103020 | None:intergenic |
| CTTCCAAAACCACGTGAACA+CGG | 0.555093 | 1.2:+53103469 | None:intergenic |
| CCAACATTGCTTCTTCGGCT+CGG | 0.556816 | 1.2:-53102853 | MS.gene50644:CDS |
| TATTTAGGAAAGTTCAAGCT+CGG | 0.557831 | 1.2:-53103129 | MS.gene50644:CDS |
| GCATGTAGTGGTTCAAAATG+AGG | 0.559809 | 1.2:-53102558 | MS.gene50644:CDS |
| TTTGCTCTTTAACATGCCCT+CGG | 0.561148 | 1.2:+53103059 | None:intergenic |
| AAAGTAACCAATATAATGGA+AGG | 0.561546 | 1.2:-53102928 | MS.gene50644:CDS |
| TTTCTTCAATAGGTTGAGGA+GGG | 0.570516 | 1.2:+53103024 | None:intergenic |
| GTTTCTTCAATAGGTTGAGG+AGG | 0.572179 | 1.2:+53103023 | None:intergenic |
| TTCCAAAACCACGTGAACAC+GGG | 0.574997 | 1.2:+53103470 | None:intergenic |
| CTCATCGTCGCCAACAACGT+TGG | 0.587414 | 1.2:-53105150 | MS.gene50644:intron |
| GCAGAAATAGGAACGATGAT+GGG | 0.587866 | 1.2:-53103282 | MS.gene50644:CDS |
| AAGAAACACTCTGTTGAGCA+AGG | 0.591435 | 1.2:-53103007 | MS.gene50644:CDS |
| AAGTGTTTCCCGTGTTCACG+TGG | 0.592780 | 1.2:-53103478 | MS.gene50644:CDS |
| GAACAAACCTATAATAATGA+GGG | 0.596913 | 1.2:-53102590 | MS.gene50644:CDS |
| AATGAAGAAGGGAGATCTCG+TGG | 0.596961 | 1.2:-53102465 | MS.gene50644:CDS |
| AGAAAGTTGAAGCACGCCGA+GGG | 0.601504 | 1.2:-53103075 | MS.gene50644:CDS |
| CAAGGCAAAACAATAGGCAT+GGG | 0.615186 | 1.2:-53103315 | MS.gene50644:CDS |
| GGGTTCTCCAAAATGAAGAA+GGG | 0.625338 | 1.2:-53102476 | MS.gene50644:CDS |
| TCAGCCAAGTTATTAGAGAG+AGG | 0.631266 | 1.2:+53102779 | None:intergenic |
| AATAGGCATGGGTCATCAAG+AGG | 0.632902 | 1.2:-53103304 | MS.gene50644:CDS |
| TGACATTGATCTTGATACAA+AGG | 0.632946 | 1.2:-53102660 | MS.gene50644:CDS |
| GGAGGAACTCAGATTTCTCA+AGG | 0.637151 | 1.2:-53103333 | MS.gene50644:CDS |
| AGGACTAAAGTATGGTTCAA+CGG | 0.640774 | 1.2:-53103380 | MS.gene50644:CDS |
| AGGGCACTTGCAAAGTCTCG+TGG | 0.643518 | 1.2:-53102506 | MS.gene50644:CDS |
| TTTCTTTGGAAAACTGACCG+AGG | 0.646782 | 1.2:+53102830 | None:intergenic |
| AAGAAAGTTGAAGCACGCCG+AGG | 0.654479 | 1.2:-53103076 | MS.gene50644:CDS |
| AGGAAAGAGAAGTAATGGAG+AGG | 0.667328 | 1.2:-53102987 | MS.gene50644:CDS |
| CAACAATCTCCTTCTCTCTG+GGG | 0.674813 | 1.2:+53103155 | None:intergenic |
| GGGTGTGGATGAGCATGTAG+TGG | 0.698167 | 1.2:-53102570 | MS.gene50644:CDS |
| AGAGGCTGGTACCTAACACG+TGG | 0.705728 | 1.2:+53102797 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAACAAAAAATATATTTG+AGG | + | chr1.2:53103078-53103097 | None:intergenic | 15.0% |
| !! | GATGATTATGATTAAAATTT+GGG | - | chr1.2:53102952-53102971 | MS.gene50644:CDS | 15.0% |
| !!! | ATTTTCTTTGTTTTTTCAAT+TGG | - | chr1.2:53102634-53102653 | MS.gene50644:CDS | 15.0% |
| !!! | ATTTTTCTTCATAATACAAT+GGG | - | chr1.2:53103264-53103283 | MS.gene50644:CDS | 15.0% |
| !! | AAGAATAAAAAAATCCAACT+TGG | + | chr1.2:53103831-53103850 | None:intergenic | 20.0% |
| !! | AATATATTTGAGGACTAAAT+TGG | + | chr1.2:53103068-53103087 | None:intergenic | 20.0% |
| !! | ACATCAAATTATACAAAACA+CGG | + | chr1.2:53104027-53104046 | None:intergenic | 20.0% |
| !! | AGAGACTTATTTAACTAAAA+AGG | + | chr1.2:53103597-53103616 | None:intergenic | 20.0% |
| !! | ATCAAACCAATCAAATAAAA+GGG | + | chr1.2:53102566-53102585 | None:intergenic | 20.0% |
| !! | ATTAACATGCTAATTTAAAC+TGG | + | chr1.2:53103865-53103884 | None:intergenic | 20.0% |
| !! | GAGACTTATTTAACTAAAAA+GGG | + | chr1.2:53103596-53103615 | None:intergenic | 20.0% |
| !! | GATATGTTATCTTCAAAAAA+TGG | - | chr1.2:53104384-53104403 | MS.gene50644:intron | 20.0% |
| !! | GGATGATTATGATTAAAATT+TGG | - | chr1.2:53102951-53102970 | MS.gene50644:CDS | 20.0% |
| !! | TATCAAACCAATCAAATAAA+AGG | + | chr1.2:53102567-53102586 | None:intergenic | 20.0% |
| !! | TCAAAAATTGTATTGCATAT+GGG | - | chr1.2:53103292-53103311 | MS.gene50644:CDS | 20.0% |
| !!! | AAGTTGGATTTTTTTATTCT+TGG | - | chr1.2:53103830-53103849 | MS.gene50644:intron | 20.0% |
| !!! | ATGTTGTTTTAAATTTTCTC+AGG | - | chr1.2:53102885-53102904 | MS.gene50644:CDS | 20.0% |
| !!! | CATTTTTCTTCATAATACAA+TGG | - | chr1.2:53103263-53103282 | MS.gene50644:CDS | 20.0% |
| !!! | TGATATACAAATTTTACACT+AGG | - | chr1.2:53102582-53102601 | MS.gene50644:CDS | 20.0% |
| !!! | TTTATTGCCTATTATTTTCT+GGG | - | chr1.2:53102687-53102706 | MS.gene50644:CDS | 20.0% |
| !!! | TTTTATTGTTACATGTTTCT+GGG | - | chr1.2:53103039-53103058 | MS.gene50644:CDS | 20.0% |
| !!! | TTTTTCTTCATAATACAATG+GGG | - | chr1.2:53103265-53103284 | MS.gene50644:CDS | 20.0% |
| ! | AATAAACCCAATTGAACATA+CGG | + | chr1.2:53102617-53102636 | None:intergenic | 25.0% |
| ! | AATAGTACATCACATATTCT+AGG | - | chr1.2:53103553-53103572 | MS.gene50644:intron | 25.0% |
| ! | AATCATCATCAGAAAATTCA+GGG | + | chr1.2:53104992-53105011 | None:intergenic | 25.0% |
| ! | AGGAGATTGTTGAATTATTT+AGG | - | chr1.2:53104469-53104488 | MS.gene50644:intron | 25.0% |
| ! | AGGTTTAGTTATGATAGATT+AGG | + | chr1.2:53103975-53103994 | None:intergenic | 25.0% |
| ! | ATTCATTCTCATGTCAAAAT+TGG | - | chr1.2:53104210-53104229 | MS.gene50644:intron | 25.0% |
| ! | CAAGAAAGTAACCAATATAA+TGG | - | chr1.2:53104681-53104700 | MS.gene50644:intron | 25.0% |
| ! | CTCAAAAATTGTATTGCATA+TGG | - | chr1.2:53103291-53103310 | MS.gene50644:CDS | 25.0% |
| ! | CTCTTATGTAAGTAAGTTTA+GGG | + | chr1.2:53103110-53103129 | None:intergenic | 25.0% |
| ! | GAACAAACCTATAATAATGA+GGG | - | chr1.2:53105023-53105042 | MS.gene50644:intron | 25.0% |
| ! | GGTTTAGTTATGATAGATTA+GGG | + | chr1.2:53103974-53103993 | None:intergenic | 25.0% |
| ! | GTAAATCATGTTATCTTAGT+GGG | - | chr1.2:53102709-53102728 | MS.gene50644:CDS | 25.0% |
| ! | GTTGGAAATATATGGAAAAA+TGG | + | chr1.2:53103466-53103485 | None:intergenic | 25.0% |
| ! | TAAAAAAATCCAACTTGGTA+AGG | + | chr1.2:53103826-53103845 | None:intergenic | 25.0% |
| ! | TAAAAACCGTATGTTCAATT+GGG | - | chr1.2:53102608-53102627 | MS.gene50644:CDS | 25.0% |
| ! | TAAAATGCGTTACAAAAAGA+AGG | + | chr1.2:53103708-53103727 | None:intergenic | 25.0% |
| ! | TAAAATGTACTCCATCATAA+AGG | + | chr1.2:53103678-53103697 | None:intergenic | 25.0% |
| ! | TAAATCAATGGTGATAAAAG+AGG | - | chr1.2:53103639-53103658 | MS.gene50644:intron | 25.0% |
| ! | TCAAACCAATCAAATAAAAG+GGG | + | chr1.2:53102565-53102584 | None:intergenic | 25.0% |
| ! | TGATTTACCCAGAAAATAAT+AGG | + | chr1.2:53102697-53102716 | None:intergenic | 25.0% |
| ! | TTAAAAACCGTATGTTCAAT+TGG | - | chr1.2:53102607-53102626 | MS.gene50644:CDS | 25.0% |
| !! | AAAGTAACCAATATAATGGA+AGG | - | chr1.2:53104685-53104704 | MS.gene50644:intron | 25.0% |
| !! | AACTCTAAATTTTCTGATTC+AGG | - | chr1.2:53104711-53104730 | MS.gene50644:intron | 25.0% |
| !! | CTCATTATTATAGGTTTGTT+CGG | + | chr1.2:53105024-53105043 | None:intergenic | 25.0% |
| !! | CTTTATTGCCTATTATTTTC+TGG | - | chr1.2:53102686-53102705 | MS.gene50644:CDS | 25.0% |
| !! | CTTTTATTGTTACATGTTTC+TGG | - | chr1.2:53103038-53103057 | MS.gene50644:CDS | 25.0% |
| !! | TTTTCTTCATAATACAATGG+GGG | - | chr1.2:53103266-53103285 | MS.gene50644:CDS | 25.0% |
| !!! | TAAAACCCCTTTTATTTGAT+TGG | - | chr1.2:53102557-53102576 | MS.gene50644:CDS | 25.0% |
| !!! | TTTGAGTATCTACTTTTTAC+TGG | + | chr1.2:53103731-53103750 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTCAATTGGTTG+CGG | - | chr1.2:53102640-53102659 | MS.gene50644:CDS | 25.0% |
| AAAAACCTAAACCAGAGAAA+AGG | + | chr1.2:53102843-53102862 | None:intergenic | 30.0% | |
| AAAACCTAAACCAGAGAAAA+GGG | + | chr1.2:53102842-53102861 | None:intergenic | 30.0% | |
| AAAATTGGAGGACTAAAGTA+TGG | - | chr1.2:53104225-53104244 | MS.gene50644:intron | 30.0% | |
| ACTGAAGATGTCTGAATTAA+GGG | - | chr1.2:53105088-53105107 | MS.gene50644:intron | 30.0% | |
| ATTTCTCAAGGCAAAACAAT+AGG | - | chr1.2:53104292-53104311 | MS.gene50644:intron | 30.0% | |
| CATAGACTATACTATAGTGT+TGG | + | chr1.2:53102982-53103001 | None:intergenic | 30.0% | |
| CATCTTAAAATTCTACACCA+AGG | + | chr1.2:53102789-53102808 | None:intergenic | 30.0% | |
| CCTAAACTTACTTACATAAG+AGG | - | chr1.2:53103108-53103127 | MS.gene50644:CDS | 30.0% | |
| CCTCTTATGTAAGTAAGTTT+AGG | + | chr1.2:53103111-53103130 | None:intergenic | 30.0% | |
| CGAACAAACCTATAATAATG+AGG | - | chr1.2:53105022-53105041 | MS.gene50644:intron | 30.0% | |
| GAATCATCATCAGAAAATTC+AGG | + | chr1.2:53104993-53105012 | None:intergenic | 30.0% | |
| GATACTAATGCAATACCAAT+AGG | - | chr1.2:53104855-53104874 | MS.gene50644:intron | 30.0% | |
| GGTAAATCATGTTATCTTAG+TGG | - | chr1.2:53102708-53102727 | MS.gene50644:CDS | 30.0% | |
| GTCATTGAAACGTCAAATAT+TGG | + | chr1.2:53102757-53102776 | None:intergenic | 30.0% | |
| TAGATGACATTCAGAAAAGA+AGG | - | chr1.2:53103229-53103248 | MS.gene50644:CDS | 30.0% | |
| TATTTAGGAAAGTTCAAGCT+CGG | - | chr1.2:53104484-53104503 | MS.gene50644:intron | 30.0% | |
| TCATTATCTTCAGTACCTAT+TGG | + | chr1.2:53104873-53104892 | None:intergenic | 30.0% | |
| TCTATCATAACTAAACCTAG+AGG | - | chr1.2:53103977-53103996 | MS.gene50644:intron | 30.0% | |
| TGAAGATAATGAGAACATTC+AGG | - | chr1.2:53104881-53104900 | MS.gene50644:intron | 30.0% | |
| TGACATTGATCTTGATACAA+AGG | - | chr1.2:53104953-53104972 | MS.gene50644:intron | 30.0% | |
| TGTAAGGACGAAAAAAGTAA+AGG | + | chr1.2:53104053-53104072 | None:intergenic | 30.0% | |
| TGTTAAAAGTCAGAACATTG+TGG | - | chr1.2:53102930-53102949 | MS.gene50644:CDS | 30.0% | |
| TTTGGAAGGTTGGAAATATA+TGG | + | chr1.2:53103474-53103493 | None:intergenic | 30.0% | |
| ! | AGTTTTGCCTTCCATTATAT+TGG | + | chr1.2:53104695-53104714 | None:intergenic | 30.0% |
| ! | ATTGTATTGCATATGGGTTT+TGG | - | chr1.2:53103298-53103317 | MS.gene50644:CDS | 30.0% |
| ! | TTGGTAATTACAGGACATTT+AGG | - | chr1.2:53103143-53103162 | MS.gene50644:CDS | 30.0% |
| ! | TTGTATTGCATATGGGTTTT+GGG | - | chr1.2:53103299-53103318 | MS.gene50644:CDS | 30.0% |
| ! | TTTCTTTTCTTCTTTGACAG+TGG | + | chr1.2:53104523-53104542 | None:intergenic | 30.0% |
| !! | GACTGTTCTCATATTAGTTT+TGG | - | chr1.2:53102516-53102535 | MS.gene50644:CDS | 30.0% |
| !!! | AAAGGGGTTTTAGAAATTGA+AGG | + | chr1.2:53102549-53102568 | None:intergenic | 30.0% |
| !!! | AAGGGGTTTTAGAAATTGAA+GGG | + | chr1.2:53102548-53102567 | None:intergenic | 30.0% |
| !!! | ATGTTTTTTATGACCCTTAG+AGG | - | chr1.2:53103797-53103816 | MS.gene50644:intron | 30.0% |
| !!! | GGTGTAGAATTTTAAGATGT+AGG | - | chr1.2:53102790-53102809 | MS.gene50644:CDS | 30.0% |
| !!! | TGTTTTTTATGACCCTTAGA+GGG | - | chr1.2:53103798-53103817 | MS.gene50644:intron | 30.0% |
| AACAATAAAAGAGACGCTTG+TGG | + | chr1.2:53103029-53103048 | None:intergenic | 35.0% | |
| AACCTATAATAATGAGGGTG+TGG | - | chr1.2:53105028-53105047 | MS.gene50644:intron | 35.0% | |
| ACATTCAGAAAAGAAGGCTT+TGG | - | chr1.2:53103235-53103254 | MS.gene50644:CDS | 35.0% | |
| ACCACAAAGATAATCGTGTA+AGG | + | chr1.2:53104069-53104088 | None:intergenic | 35.0% | |
| AGAACAGTCTTGAATCAAAG+AGG | + | chr1.2:53102505-53102524 | None:intergenic | 35.0% | |
| AGGACTAAAGTATGGTTCAA+CGG | - | chr1.2:53104233-53104252 | MS.gene50644:intron | 35.0% | |
| AGGGGTTTGAAAAAAAAGGA+AGG | - | chr1.2:53103191-53103210 | MS.gene50644:CDS | 35.0% | |
| AGTGTTTCTTCAATAGGTTG+AGG | + | chr1.2:53104596-53104615 | None:intergenic | 35.0% | |
| ATCCACACCCTCATTATTAT+AGG | + | chr1.2:53105033-53105052 | None:intergenic | 35.0% | |
| ATCTTTGTGGTTGTTGAGTT+GGG | - | chr1.2:53104078-53104097 | MS.gene50644:intron | 35.0% | |
| ATTCAGAAAAGAAGGCTTTG+GGG | - | chr1.2:53103237-53103256 | MS.gene50644:CDS | 35.0% | |
| CACTGAAGATGTCTGAATTA+AGG | - | chr1.2:53105087-53105106 | MS.gene50644:intron | 35.0% | |
| CATTCAGAAAAGAAGGCTTT+GGG | - | chr1.2:53103236-53103255 | MS.gene50644:CDS | 35.0% | |
| CATTCTCATGTCAAAATTGG+AGG | - | chr1.2:53104213-53104232 | MS.gene50644:intron | 35.0% | |
| CCATTAGTATCGCATAATTC+AGG | - | chr1.2:53104408-53104427 | MS.gene50644:intron | 35.0% | |
| CCTGAATTATGCGATACTAA+TGG | + | chr1.2:53104411-53104430 | None:intergenic | 35.0% | |
| GCATAATTCAGGAAAATTCC+AGG | - | chr1.2:53104419-53104438 | MS.gene50644:intron | 35.0% | |
| GTATATTCATGCACTTCTCT+AGG | - | chr1.2:53104177-53104196 | MS.gene50644:intron | 35.0% | |
| TATCTTTGTGGTTGTTGAGT+TGG | - | chr1.2:53104077-53104096 | MS.gene50644:intron | 35.0% | |
| TCAATGACCAATTGTAACCT+TGG | - | chr1.2:53102769-53102788 | MS.gene50644:CDS | 35.0% | |
| TCAATGTCAGACACAAGTTT+AGG | + | chr1.2:53104942-53104961 | None:intergenic | 35.0% | |
| TCCTTACACGATTATCTTTG+TGG | - | chr1.2:53104065-53104084 | MS.gene50644:intron | 35.0% | |
| TGGTGATAAAAGAGGATAAC+TGG | - | chr1.2:53103647-53103666 | MS.gene50644:intron | 35.0% | |
| TTCTACACCAAGGTTACAAT+TGG | + | chr1.2:53102779-53102798 | None:intergenic | 35.0% | |
| ! | AAAAGGGTAAACCACCATTT+TGG | + | chr1.2:53103580-53103599 | None:intergenic | 35.0% |
| ! | ATTGGTTACTTTCTTGCAAC+TGG | + | chr1.2:53104677-53104696 | None:intergenic | 35.0% |
| ! | CAACAGAGTGTTTCTTCAAT+AGG | + | chr1.2:53104602-53104621 | None:intergenic | 35.0% |
| ! | CATCTTTTGTATGTGAAGCA+AGG | - | chr1.2:53104259-53104278 | MS.gene50644:intron | 35.0% |
| ! | TAAGCTGAGTTTTCAACAGT+TGG | - | chr1.2:53103946-53103965 | MS.gene50644:intron | 35.0% |
| ! | TGTAGATTTTCCACAAGTCA+TGG | - | chr1.2:53103897-53103916 | MS.gene50644:intron | 35.0% |
| ! | TGTATTGCATATGGGTTTTG+GGG | - | chr1.2:53103300-53103319 | MS.gene50644:CDS | 35.0% |
| ! | TTACTATCGTCTCTAAGAGT+TGG | + | chr1.2:53103535-53103554 | None:intergenic | 35.0% |
| ! | TTTCTTCAATAGGTTGAGGA+GGG | + | chr1.2:53104592-53104611 | None:intergenic | 35.0% |
| !! | ACATTTAGGCTTTGTTTGGA+GGG | - | chr1.2:53103157-53103176 | MS.gene50644:CDS | 35.0% |
| !! | ATATTCTAGGACCAAAATGG+TGG | - | chr1.2:53103566-53103585 | MS.gene50644:intron | 35.0% |
| !! | CACATATTCTAGGACCAAAA+TGG | - | chr1.2:53103563-53103582 | MS.gene50644:intron | 35.0% |
| !! | CAGAGATTGTTGGTAATTAC+AGG | - | chr1.2:53103134-53103153 | MS.gene50644:CDS | 35.0% |
| !! | GAGTTGGGTTGATATATTTC+AGG | - | chr1.2:53104093-53104112 | MS.gene50644:intron | 35.0% |
| !! | GGTTGATATATTTCAGGTTG+TGG | - | chr1.2:53104099-53104118 | MS.gene50644:intron | 35.0% |
| !! | GTTGATAGTTTGCTACCATA+GGG | - | chr1.2:53103999-53104018 | MS.gene50644:intron | 35.0% |
| !!! | AGGGGTTTTAGAAATTGAAG+GGG | + | chr1.2:53102547-53102566 | None:intergenic | 35.0% |
| AACTGGTGTGTCCTTTATGA+TGG | - | chr1.2:53103664-53103683 | MS.gene50644:intron | 40.0% | |
| AAGAAACACTCTGTTGAGCA+AGG | - | chr1.2:53104606-53104625 | MS.gene50644:intron | 40.0% | |
| ACTACAATGACCATGACTTG+TGG | + | chr1.2:53103910-53103929 | None:intergenic | 40.0% | |
| AGAAGCCAACATTGCTTCTT+CGG | - | chr1.2:53104755-53104774 | MS.gene50644:intron | 40.0% | |
| AGGGTTCTCCAAAATGAAGA+AGG | - | chr1.2:53105136-53105155 | MS.gene50644:intron | 40.0% | |
| CAAGGCAAAACAATAGGCAT+GGG | - | chr1.2:53104298-53104317 | MS.gene50644:intron | 40.0% | |
| GAGATACTAACCAACGTTGT+TGG | + | chr1.2:53102476-53102495 | None:intergenic | 40.0% | |
| GAGCAAGGAAAGAGAAGTAA+TGG | - | chr1.2:53104621-53104640 | MS.gene50644:intron | 40.0% | |
| GCAGAAATAGGAACGATGAT+GGG | - | chr1.2:53104331-53104350 | MS.gene50644:intron | 40.0% | |
| GCATGTAGTGGTTCAAAATG+AGG | - | chr1.2:53105055-53105074 | MS.gene50644:intron | 40.0% | |
| GGGTTCTCCAAAATGAAGAA+GGG | - | chr1.2:53105137-53105156 | MS.gene50644:intron | 40.0% | |
| GTAGCAAACTATCAACCTCT+AGG | + | chr1.2:53103995-53104014 | None:intergenic | 40.0% | |
| TCAACAATCTCCTTCTCTCT+GGG | + | chr1.2:53104462-53104481 | None:intergenic | 40.0% | |
| TCAAGGCAAAACAATAGGCA+TGG | - | chr1.2:53104297-53104316 | MS.gene50644:intron | 40.0% | |
| TCAGCCAAGTTATTAGAGAG+AGG | + | chr1.2:53104837-53104856 | None:intergenic | 40.0% | |
| TTCAACAATCTCCTTCTCTC+TGG | + | chr1.2:53104463-53104482 | None:intergenic | 40.0% | |
| TTTGCTCTTTAACATGCCCT+CGG | + | chr1.2:53104557-53104576 | None:intergenic | 40.0% | |
| ! | AGGAAAGAGAAGTAATGGAG+AGG | - | chr1.2:53104626-53104645 | MS.gene50644:intron | 40.0% |
| ! | ATCGTCTCTAAGAGTTGGTT+TGG | + | chr1.2:53103530-53103549 | None:intergenic | 40.0% |
| ! | ATTGGTTGCGGTTTTCTCAT+AGG | - | chr1.2:53102652-53102671 | MS.gene50644:CDS | 40.0% |
| ! | CTTTTGTATGTGAAGCAAGG+AGG | - | chr1.2:53104262-53104281 | MS.gene50644:intron | 40.0% |
| ! | GAGATCTCCCTTCTTCATTT+TGG | + | chr1.2:53105147-53105166 | None:intergenic | 40.0% |
| ! | GTTTCTTCAATAGGTTGAGG+AGG | + | chr1.2:53104593-53104612 | None:intergenic | 40.0% |
| ! | TCAGACACAAGTTTAGGTTC+TGG | + | chr1.2:53104936-53104955 | None:intergenic | 40.0% |
| ! | TCGTCTCTAAGAGTTGGTTT+GGG | + | chr1.2:53103529-53103548 | None:intergenic | 40.0% |
| ! | TTCAGAAAAGAAGGCTTTGG+GGG | - | chr1.2:53103238-53103257 | MS.gene50644:CDS | 40.0% |
| ! | TTGCGGTTTTCTCATAGGAA+AGG | - | chr1.2:53102657-53102676 | MS.gene50644:CDS | 40.0% |
| ! | TTTCTTTGGAAAACTGACCG+AGG | + | chr1.2:53104786-53104805 | None:intergenic | 40.0% |
| !! | CAGGACATTTAGGCTTTGTT+TGG | - | chr1.2:53103153-53103172 | MS.gene50644:CDS | 40.0% |
| !! | GACATTTAGGCTTTGTTTGG+AGG | - | chr1.2:53103156-53103175 | MS.gene50644:CDS | 40.0% |
| !! | GGTTGATAGTTTGCTACCAT+AGG | - | chr1.2:53103998-53104017 | MS.gene50644:intron | 40.0% |
| !! | TAAGAGGCATCAGAGATTGT+TGG | - | chr1.2:53103124-53103143 | MS.gene50644:CDS | 40.0% |
| !! | TAAGAGTTGGTTTGGGAGTT+TGG | + | chr1.2:53103522-53103541 | None:intergenic | 40.0% |
| !!! | ATATGGGTTTTGGGGAGTTT+TGG | - | chr1.2:53103308-53103327 | MS.gene50644:CDS | 40.0% |
| !!! | ATTAGAAGTGCCCTTTTCTC+TGG | - | chr1.2:53102829-53102848 | MS.gene50644:CDS | 40.0% |
| AATAGGCATGGGTCATCAAG+AGG | - | chr1.2:53104309-53104328 | MS.gene50644:intron | 45.0% | |
| AATGAAGAAGGGAGATCTCG+TGG | - | chr1.2:53105148-53105167 | MS.gene50644:intron | 45.0% | |
| ACTTGGTAAGGTTCCCTCTA+AGG | + | chr1.2:53103814-53103833 | None:intergenic | 45.0% | |
| ATACAAAACACGGTGCCCTA+TGG | + | chr1.2:53104017-53104036 | None:intergenic | 45.0% | |
| CAACAATCTCCTTCTCTCTG+GGG | + | chr1.2:53104461-53104480 | None:intergenic | 45.0% | |
| CCAAGTTATTAGAGAGAGGC+TGG | + | chr1.2:53104833-53104852 | None:intergenic | 45.0% | |
| CCAGCCTCTCTCTAATAACT+TGG | - | chr1.2:53104830-53104849 | MS.gene50644:intron | 45.0% | |
| CTTCCAAAACCACGTGAACA+CGG | + | chr1.2:53104147-53104166 | None:intergenic | 45.0% | |
| CTTGCAACTGGTCAGAGTTA+AGG | + | chr1.2:53104665-53104684 | None:intergenic | 45.0% | |
| CTTGGTAAGGTTCCCTCTAA+GGG | + | chr1.2:53103813-53103832 | None:intergenic | 45.0% | |
| GGAGGAACTCAGATTTCTCA+AGG | - | chr1.2:53104280-53104299 | MS.gene50644:intron | 45.0% | |
| GGCAGAAATAGGAACGATGA+TGG | - | chr1.2:53104330-53104349 | MS.gene50644:intron | 45.0% | |
| GGGGAGGGGTTTGAAAAAAA+AGG | - | chr1.2:53103187-53103206 | MS.gene50644:CDS | 45.0% | |
| GGTCATCAAGAGGCAGAAAT+AGG | - | chr1.2:53104319-53104338 | MS.gene50644:intron | 45.0% | |
| GTGGAACAGGAGACTTTCTT+TGG | + | chr1.2:53104800-53104819 | None:intergenic | 45.0% | |
| TAGAGGGAACCTTACCAAGT+TGG | - | chr1.2:53103814-53103833 | MS.gene50644:intron | 45.0% | |
| TCTGATTCAGGTGCTCCAAA+GGG | - | chr1.2:53104723-53104742 | MS.gene50644:intron | 45.0% | |
| TTCCAAAACCACGTGAACAC+GGG | + | chr1.2:53104146-53104165 | None:intergenic | 45.0% | |
| TTCTGATTCAGGTGCTCCAA+AGG | - | chr1.2:53104722-53104741 | MS.gene50644:intron | 45.0% | |
| TTTGTTTGGAGGGTAAGGGA+GGG | - | chr1.2:53103167-53103186 | MS.gene50644:CDS | 45.0% | |
| ! | AGAAGTAATGGAGAGGACGA+TGG | - | chr1.2:53104633-53104652 | MS.gene50644:intron | 45.0% |
| !! | AGGCTTTGTTTGGAGGGTAA+GGG | - | chr1.2:53103163-53103182 | MS.gene50644:CDS | 45.0% |
| !! | AGTGCCCTTTTCTCTGGTTT+AGG | - | chr1.2:53102835-53102854 | MS.gene50644:CDS | 45.0% |
| !! | AGTTGGTTTGGGAGTTTGGA+AGG | + | chr1.2:53103518-53103537 | None:intergenic | 45.0% |
| !! | GTTGGTTTGGGAGTTTGGAA+GGG | + | chr1.2:53103517-53103536 | None:intergenic | 45.0% |
| !! | TAGGCTTTGTTTGGAGGGTA+AGG | - | chr1.2:53103162-53103181 | MS.gene50644:CDS | 45.0% |
| !!! | TATTATTTAAAATAAATGAA+TGG | + | chr1.2:53103621-53103640 | None:intergenic | 5.0% |
| !!! | TATTTTAAATAATAAATCAA+TGG | - | chr1.2:53103627-53103646 | MS.gene50644:intron | 5.0% |
| AAGAAAGTTGAAGCACGCCG+AGG | - | chr1.2:53104537-53104556 | MS.gene50644:intron | 50.0% | |
| AAGTGTTTCCCGTGTTCACG+TGG | - | chr1.2:53104135-53104154 | MS.gene50644:intron | 50.0% | |
| AGAAAGTTGAAGCACGCCGA+GGG | - | chr1.2:53104538-53104557 | MS.gene50644:intron | 50.0% | |
| AGTCTCCTGTTCCACGTGTT+AGG | - | chr1.2:53104805-53104824 | MS.gene50644:intron | 50.0% | |
| CAAAGTCTCGTGGCGTGAAA+GGG | - | chr1.2:53105117-53105136 | MS.gene50644:intron | 50.0% | |
| CACGGGAAACACTTGTCTTC+TGG | + | chr1.2:53104129-53104148 | None:intergenic | 50.0% | |
| CCAACATTGCTTCTTCGGCT+CGG | - | chr1.2:53104760-53104779 | MS.gene50644:intron | 50.0% | |
| GTTTGGGAGTTTGGAAGGGA+GGG | + | chr1.2:53103513-53103532 | None:intergenic | 50.0% | |
| TGGTACCTAACACGTGGAAC+AGG | + | chr1.2:53104813-53104832 | None:intergenic | 50.0% | |
| TTGTTTGGAGGGTAAGGGAG+GGG | - | chr1.2:53103168-53103187 | MS.gene50644:CDS | 50.0% | |
| TTTGGGAGTTTGGAAGGGAG+GGG | + | chr1.2:53103512-53103531 | None:intergenic | 50.0% | |
| ! | CTTTGTTTGGAGGGTAAGGG+AGG | - | chr1.2:53103166-53103185 | MS.gene50644:CDS | 50.0% |
| ! | TTCCCGTGTTCACGTGGTTT+TGG | - | chr1.2:53104141-53104160 | MS.gene50644:intron | 50.0% |
| !! | AAGGGAAGGCTTTGGAAGGT+TGG | + | chr1.2:53103484-53103503 | None:intergenic | 50.0% |
| !!! | GGGTTTTGGGGAGTTTTGGA+GGG | - | chr1.2:53103312-53103331 | MS.gene50644:CDS | 50.0% |
| !!! | TGGGTTTTGGGGAGTTTTGG+AGG | - | chr1.2:53103311-53103330 | MS.gene50644:CDS | 50.0% |
| AGAGGCTGGTACCTAACACG+TGG | + | chr1.2:53104819-53104838 | None:intergenic | 55.0% | |
| CCGAGCCGAAGAAGCAATGT+TGG | + | chr1.2:53104763-53104782 | None:intergenic | 55.0% | |
| CTCATCGTCGCCAACAACGT+TGG | - | chr1.2:53102463-53102482 | MS.gene50644:CDS | 55.0% | |
| GCAAAGTCTCGTGGCGTGAA+AGG | - | chr1.2:53105116-53105135 | MS.gene50644:intron | 55.0% | |
| GGGTGTGGATGAGCATGTAG+TGG | - | chr1.2:53105043-53105062 | MS.gene50644:intron | 55.0% | |
| GGTTTGGGAGTTTGGAAGGG+AGG | + | chr1.2:53103514-53103533 | None:intergenic | 55.0% | |
| TTCAAGCTCGGTTGCGTGAG+AGG | - | chr1.2:53104496-53104515 | MS.gene50644:intron | 55.0% | |
| ! | AGGGCACTTGCAAAGTCTCG+TGG | - | chr1.2:53105107-53105126 | MS.gene50644:intron | 55.0% |
| GAGTTTGGAAGGGAGGGGAG+GGG | + | chr1.2:53103507-53103526 | None:intergenic | 60.0% | |
| GCTTCTCGAGACTCGCCCTT+TGG | + | chr1.2:53104741-53104760 | None:intergenic | 60.0% | |
| GGAGTTTGGAAGGGAGGGGA+GGG | + | chr1.2:53103508-53103527 | None:intergenic | 60.0% | |
| TTCCAGGCCACTTCATCCCC+TGG | - | chr1.2:53104435-53104454 | MS.gene50644:intron | 60.0% | |
| TTGGAGGGTAAGGGAGGGGA+GGG | - | chr1.2:53103172-53103191 | MS.gene50644:CDS | 60.0% | |
| TTTGGAGGGTAAGGGAGGGG+AGG | - | chr1.2:53103171-53103190 | MS.gene50644:CDS | 60.0% | |
| !! | ATCTCCTTCTCTCTGGGGCC+AGG | + | chr1.2:53104456-53104475 | None:intergenic | 60.0% |
| !! | GGGGAAGGGAAGGCTTTGGA+AGG | + | chr1.2:53103488-53103507 | None:intergenic | 60.0% |
| !! | TCTCCTTCTCTCTGGGGCCA+GGG | + | chr1.2:53104455-53104474 | None:intergenic | 60.0% |
| !! | TTGCTTCTTCGGCTCGGCCT+CGG | - | chr1.2:53104766-53104785 | MS.gene50644:intron | 60.0% |
| ATCCCCTGGCCCCAGAGAGA+AGG | - | chr1.2:53104449-53104468 | MS.gene50644:intron | 65.0% | |
| GGGAGGGGAAGGGAAGGCTT+TGG | + | chr1.2:53103492-53103511 | None:intergenic | 65.0% | |
| GGGAGTTTGGAAGGGAGGGG+AGG | + | chr1.2:53103509-53103528 | None:intergenic | 65.0% | |
| TGGAAGGGAGGGGAGGGGAA+GGG | + | chr1.2:53103502-53103521 | None:intergenic | 65.0% | |
| TGGAGGGTAAGGGAGGGGAG+GGG | - | chr1.2:53103173-53103192 | MS.gene50644:CDS | 65.0% | |
| TTGGAAGGGAGGGGAGGGGA+AGG | + | chr1.2:53103503-53103522 | None:intergenic | 65.0% | |
| ! | TCTGGGGCCAGGGGATGAAG+TGG | + | chr1.2:53104445-53104464 | None:intergenic | 65.0% |
| !! | CTCCTTCTCTCTGGGGCCAG+GGG | + | chr1.2:53104454-53104473 | None:intergenic | 65.0% |
| AGGGAGGGGAGGGGAAGGGA+AGG | + | chr1.2:53103498-53103517 | None:intergenic | 70.0% | |
| GGCCAGGGGATGAAGTGGCC+TGG | + | chr1.2:53104440-53104459 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 53102445 | 53105190 | 53102445 | ID=MS.gene50644 |
| chr1.2 | mRNA | 53102445 | 53105190 | 53102445 | ID=MS.gene50644.t1;Parent=MS.gene50644 |
| chr1.2 | exon | 53105151 | 53105190 | 53105151 | ID=MS.gene50644.t1.exon1;Parent=MS.gene50644.t1 |
| chr1.2 | CDS | 53105151 | 53105190 | 53105151 | ID=cds.MS.gene50644.t1;Parent=MS.gene50644.t1 |
| chr1.2 | exon | 53102445 | 53103520 | 53102445 | ID=MS.gene50644.t1.exon2;Parent=MS.gene50644.t1 |
| chr1.2 | CDS | 53102445 | 53103520 | 53102445 | ID=cds.MS.gene50644.t1;Parent=MS.gene50644.t1 |
| Gene Sequence |
| Protein sequence |
