AlfalfaGEDB | MS.gene39104

M. sativa cultivar XinJiangDaYe / MS.gene39104

KEGG: -
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF01926.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39104.t1	XP_003625073.1	94.6	631	20	3	1	617	1	631	0.00E+00	1110.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39104.t1	Q8W4I6	62.3	610	194	7	33	609	49	655	3.3e-200	699.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39104.t1	G7KSJ1	94.6	631	20	3	1	617	1	631	0.0e+00	1110.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene39104	0.825862	3.72E-54	-1.69E-46
MS.gene049153	MS.gene39104	0.824646	7.21E-54	-1.69E-46
MS.gene049260	MS.gene39104	0.860723	1.69E-63	-1.69E-46
MS.gene049297	MS.gene39104	0.863536	2.32E-64	-1.69E-46
MS.gene04933	MS.gene39104	0.806969	6.35E-50	-1.69E-46
MS.gene049346	MS.gene39104	0.819169	1.34E-52	-1.69E-46
MS.gene049351	MS.gene39104	0.83463	2.68E-56	-1.69E-46
MS.gene049389	MS.gene39104	0.807179	5.74E-50	-1.69E-46
MS.gene049491	MS.gene39104	0.812821	3.50E-51	-1.69E-46
MS.gene049681	MS.gene39104	0.80241	5.68E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39104.t1	MTR_7g090640	94.453	631	21	3	1	617	1	631	0.0	1215
MS.gene39104.t1	MTR_4g074870	50.224	446	206	4	172	603	127	570	1.82e-153	454
MS.gene39104.t1	MTR_2g060420	26.613	372	211	10	241	569	172	524	2.07e-25	110
MS.gene39104.t1	MTR_2g060420	32.961	179	93	7	244	413	175	335	2.28e-13	72.4
MS.gene39104.t1	MTR_2g060420	32.961	179	93	7	244	413	175	335	2.45e-13	72.8
MS.gene39104.t1	MTR_2g060420	26.336	262	148	7	244	478	175	418	2.81e-13	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39104.t1	AT4G10620	50.115	433	207	4	187	612	151	581	5.92e-145	433
MS.gene39104.t1	AT3G47450	27.554	323	189	9	244	540	191	494	4.70e-22	100
MS.gene39104.t1	AT3G47450	27.554	323	189	9	244	540	191	494	8.46e-22	100

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Find 166 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGAGAAGAAGAGAA+TGG	0.524889	7.4:+18143106	MS.gene39104:CDS
AAAAGTATCTGGATCTAGTT+GGG	0.464693	7.4:+18146316	MS.gene39104:CDS
AAACAATGTATGTCACTGTT+TGG	0.346253	7.4:+18144384	MS.gene39104:CDS
AAAGATGGTTGAGATAAGGA+AGG	0.653649	7.4:+18143850	MS.gene39104:CDS
AAAGCTCTATCTGAAGCTAT+TGG	0.457900	7.4:+18146509	MS.gene39104:CDS
AAATAAACTGCGCTTAACTT+AGG	0.557086	7.4:-18143527	None:intergenic
AAATATGGATGCAAGAGCCC+TGG	0.544879	7.4:-18143797	None:intergenic
AAATGATGATAAGGTTGATT+TGG	0.346656	7.4:+18143004	MS.gene39104:CDS
AAATGATGATGAGACTGAGT+GGG	0.704615	7.4:+18142944	MS.gene39104:CDS
AACAAAAGATGGTTGAGATA+AGG	0.483577	7.4:+18143846	MS.gene39104:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTAAGTATGGCCCAT+GGG	+	chr7.4:18145828-18145847	MS.gene39104:intron	30.0%
AAACAATGTATGTCACTGTT+TGG	+	chr7.4:18144384-18144403	MS.gene39104:CDS	30.0%
AAATAAACTGCGCTTAACTT+AGG	-	chr7.4:18143530-18143549	None:intergenic	30.0%
AAATGATTGATCGTACAGTT+CGG	-	chr7.4:18146136-18146155	None:intergenic	30.0%
AACAAAAGATGGTCAGAATA+TGG	-	chr7.4:18144549-18144568	None:intergenic	30.0%
AACAAAAGATGGTTGAGATA+AGG	+	chr7.4:18143846-18143865	MS.gene39104:CDS	30.0%
AACAATGTATGTCACTGTTT+GGG	+	chr7.4:18144385-18144404	MS.gene39104:CDS	30.0%
ACCTCGTTCATATAGAATTA+CGG	+	chr7.4:18143880-18143899	MS.gene39104:CDS	30.0%
AGCTGTGAAATCATTGTTTA+AGG	+	chr7.4:18143355-18143374	MS.gene39104:CDS	30.0%
ATCATAGGTCCATAATTTCA+TGG	-	chr7.4:18146411-18146430	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	18142546	18146622	18142546	ID=MS.gene39104
chr7.4	mRNA	18142546	18146622	18142546	ID=MS.gene39104.t1;Parent=MS.gene39104
chr7.4	exon	18142546	18142642	18142546	ID=MS.gene39104.t1.exon1;Parent=MS.gene39104.t1
chr7.4	CDS	18142546	18142642	18142546	ID=cds.MS.gene39104.t1;Parent=MS.gene39104.t1
chr7.4	exon	18142670	18143905	18142670	ID=MS.gene39104.t1.exon2;Parent=MS.gene39104.t1
chr7.4	CDS	18142670	18143905	18142670	ID=cds.MS.gene39104.t1;Parent=MS.gene39104.t1
chr7.4	exon	18144333	18144490	18144333	ID=MS.gene39104.t1.exon3;Parent=MS.gene39104.t1
chr7.4	CDS	18144333	18144490	18144333	ID=cds.MS.gene39104.t1;Parent=MS.gene39104.t1
chr7.4	exon	18146260	18146622	18146260	ID=MS.gene39104.t1.exon4;Parent=MS.gene39104.t1
chr7.4	CDS	18146260	18146622	18146260	ID=cds.MS.gene39104.t1;Parent=MS.gene39104.t1

Gene Sequence

>MS.gene39104

ATGGCTATCTTGTTCTCTACAATTGCACTTCCCTCCACAAACCTCACTTCCATCTTCAACAACACTTCACATTCTCACGCACTTCGCCATTTCTCAGGTAATACTACTAAACGCTTTCATAAAGCTTCTTCCTTTATTGCTTTTGCTGTGAAGAATAACCCCACCATAAGAAAAACCACTCCAAGAAGAGATAGTAGAAACCCACTTTTGAGTGAAGGAAGAGATGAAGATGAAGCTCTTGGACCCATTTGCCCTGGTTGTGGAATTTTCATGCAAGATAATGATCCAAATCTTCCTGGTTTTTACCAACAAAAAGAGGTCAAAATTGAAGCTTTTTCAGAAGAAGATTATGAATTAGATGATGAAGAGGATGATGGTGAAGAAGAAGATAAAGGGTCAAATGATGATGAGACTGAGTGGGATTCTGATGAGTTGGAAGCTATGTTACTTGGTGAAGAAAATGATGATAAGGTTGATTTGGATGGGTTTACACATGCAGGTGTTGGGTATGGTAATGTTACTGAGGAGGTTTTAGAGAGGGCTAAGAAGAAGAAGGTTTCAAAAGCTGAGAAGAAGAGAATGGTTAGGGAAGCTGAGAAGGTGAAAGAAGAGGTTACTGTTTGTGCTAGGTGTCATTCCTTGAGAAATTATGGGCAAGTGAAGAATTATATGGCGGAGAATTTGATACCGGATTTTGATTTTGATAGGTTGATTTCGACTAGGTTGATGAATCCTGCTGGTAGTGGTAGTTCTACTGTTGTTGTTATGGTTGTGGATTGTGTTGATTTTGATGGTTCTTTCCCGAGAACAGCTGTGAAATCATTGTTTAAGGCGTTGGAAGGTATGCAGGAGAATACGAAGAAGGGTAAGAAACTGCCAAAGCTTGTGCTTGTAGCTACTAAGGTCGATCTCCTACCATCACAAGTTTCTCCAACGAGATTGGATAGATGGGTTCGACACCGTGCAAGTGCGGGAGGAGCGCCTAAGTTAAGCGCAGTTTATTTGGTCAGTTCTCGAAAGGATTTAGGTGTGAGGAATGTGTTGTCGTTTGTAAAGGATTTGGCTGGTCCTCGTGGGAATGTTTGGGTTATTGGGGCTCAAAATGCTGGGAAGTCTACTCTGATCAATGCATTTGCGAAGAAAGAAGGAGCCAAAGTTACGAAGCTCACGGAAGCTCCAGTTCCTGGGACGACACTTGGGATCTTGAGGATTGCAGGAATTTTGTCAGCCAAGGCTAAGATGTTTGATACTCCAGGGCTCTTGCATCCATATTTATTGTCGATGAGATTGAATCGGGAGGAACAAAAGATGGTTGAGATAAGGAAGGAACTTAAACCTCGTTCATATAGAATTACGGCAAGTCAATTATTGCTACTGTCATTTTCTTATTTTCTTGCATAGATTATGTACGATTATATGTGTGATTTTTGCATGTGCATTAGTTAATAGCTAACAGAAATGAGAATAGTTCTTATTTAAATGATTTTATGTGTGTTGGCTATTTAACAATGCGAGAAATTATCTGATTTCTGGAGATTATGAACCATGAATATCTGTAGTGAGTTGAGTTGAGATTGTAAGGTTTTTATGTGTATTAGTATGTATGTATGTATGTGTCTATGTAGGTTGTCAAATAGATCCTATAGCGACGCTATGACATTATAGTGTAGCAGAATTTGAACAAATCGCTATTTTACGCAATATGCGATTGACAATATTGACGTATATTTCACAAGGAGATGCTGTTTGAATCTTACATGTTGGTTTTAATTTGCAGGCTGGACAAGCTATACATGTTGGTGGCTTGGCAAGACTTGATCTAATTGAAGCCTCTGTTCAAACAATGTATGTCACTGTTTGGGCATCACCAAATGTTTCTCTACACATGGGAAAAATAGAAAATGCTAATGATATTTGGAATAATCATGTTGGCGTCAGGCTGCAGGTAAGCCTTTTCCTGTTATACTTTGCACTACTGAGGAGATACAATTGGCACGTTTCCATATTCTGACCATCTTTTGTTCAATCCATTTGATTGATTTATTTGTCTTGATCCCTCTCTGGTCTTGCAAATCTCACTTTAGGCGTGATATGATGGAATATTTTGCACAGTTTCTCTGTTGGTTATGCTTTAATACATCATCATATTCGAATAATCTAATGATAAGTATATCTTTTGATTTTCTTAAGTGGGGTTGAGGGTACTAGGTAGGGGTACTTCGATATATTTGAGTATTGAGCACCATTTACAATTGTTTCTAGGCAATTTTGTTGCCTCACACACAGTGAATATATTGGTTATCGTTGTTATTTTTTTAAAAAAGAAATTACATACTTTATTAGGGTTCCCAATTTGTTTAAAATGCTTCAAGGGCCACGTGTTCTATTCTTCAGTTTTTTAGATTTTGTTATTATATCAGTAGCATGCAAGTTGGGATTGGGATTACTTTATAAGTATAGGAGCTTATAGGTATATATAAGCGTATAGGTTTGCACAAGTGTTTATCTTTAATTATATGTATTAATATTAAATTTAATATTTTTACTAACGCCATAAATGTTTTATTACTTTTCATTGTAGCTAAGTTAGTTCAAGATACCATTTGAACGCAAGTAAAAATTCCTGTTAGTGGCAACTGTTCTGCATCATGGACATGGAGTAATTGAGTGAACATAAAAGATAGTATGTCGTAACTAAACTATCTCATAGAACCCGTAAAATCAAGATAGGAAACTGTATATTATTGAATGGTAAAGACGAGCTTAAGAGCTCCACAGTGTTGGAAAATGCAGAAAAGCAGAATGTAAACCAGAGTTCTAGGAACTCCTAAACCAGAGCTAGGCTCCCTAACCAGAGAGAAACCTCTCCTAACTGACTCTAACAGCTTTTCTGAATCATTTTCCCACTCCACTGCCCTCTCTTTTTTCTTTTTTTTGACGAACCACCGCCCTCTCTTTTATAACAGAGATTTCTTAAAATCAGGGAATATTCCAACAGACTCTTATTCCTTCTATTCAGCTTGGTTATTGGTCTTAGGCCCAAAACCAGTGTCCTGTCACTATCTTTCTTTCAGTTACAGTCTATGAAGAAATAAGTTATACACTGTCCTGCTAGTTAGTAATATAAATTATTGATCAACAGAAGTTGTTTCAAAAGTCATAAATAATCCTTTAATTTAAAGCTTACAGTGAGCTATCAGGGTGATTCTGGTAATACTCTCACATTAAAGTGTAAATCTTGGAATCTCAGATGTACATTATAGATAACCACATTAATGTGACAAAAATTAAGTATGGCCCATGGGGAGTGTAGGTTGAGTTGGTTTTCAGATGTATTGCTTGGAAAATTTGTGCAGCTTGCATGGAATAAAACAAATTATCTCTATTACGAAATTAGTTTGTCTATAGGTCGAGTATGGCTCATATTCACTGGTAAATGGACGAACGCTCGAGTGTAGCGGAACTCTACAATCAAAACCATAGTATTTATTTTTAATCACAATTTATACCTTGTAACCCAAAACATAGCATATTAGAAGGAAAAAAAACAGGCGTCATCCAACTGACAGAGACTAAGGCACAATTGGCCGAACTGTACGATCAATCATTTGTTTCTTATGTGCGTTTGTTTATCTATTTACCTTAGAGTCAGGTTTGGTGTTCTAACACACAGTTTTCCCTAATTTATGTTTTTCATTTTTGTTCTTATTCCAGCCTCCCATTGGTAATGACTGTGCAGCTGAACTAGGTACATGGAAAGAAAGGGAAGTAAAAGTATCTGGATCTAGTTGGGATGTCAACTGCATGGACATATCAATAGCTGGCTTAGGTTGGTTTTCTTTGGGTATCCAAGGTGAAGCAACCATGAAATTATGGACCTATGATGGAATTGAAATAACTTTGAGAGAACCATTGGTACTTGACCGGGCCCCGTCCCTTGAAAAACCAGGTTTTTGGTTACCAAAAGCTCTATCTGAAGCTATTGGCAACCAAACTAAACTTGAAGCTCAAAGAAGGAAAAAACTTGAAGATGAAGATACAGAATACGTGGGGGCAAGGACAGAGATCTCTGCATGA

Protein sequence

>MS.gene39104.t1

MAILFSTIALPSTNLTSIFNNTSHSHALRHFSASSFIAFAVKNNPTIRKTTPRRDSRNPLLSEGRDEDEALGPICPGCGIFMQDNDPNLPGFYQQKEVKIEAFSEEDYELDDEEDDGEEEDKGSNDDETEWDSDELEAMLLGEENDDKVDLDGFTHAGVGYGNVTEEVLERAKKKKVSKAEKKRMVREAEKVKEEVTVCARCHSLRNYGQVKNYMAENLIPDFDFDRLISTRLMNPAGSGSSTVVVMVVDCVDFDGSFPRTAVKSLFKALEGMQENTKKGKKLPKLVLVATKVDLLPSQVSPTRLDRWVRHRASAGGAPKLSAVYLVSSRKDLGVRNVLSFVKDLAGPRGNVWVIGAQNAGKSTLINAFAKKEGAKVTKLTEAPVPGTTLGILRIAGILSAKAKMFDTPGLLHPYLLSMRLNREEQKMVEIRKELKPRSYRITATIHVGGLARLDLIEASVQTMYVTVWASPNVSLHMGKIENANDIWNNHVGVRLQPPIGNDCAAELGTWKEREVKVSGSSWDVNCMDISIAGLGWFSLGIQGEATMKLWTYDGIEITLREPLVLDRAPSLEKPGFWLPKALSEAIGNQTKLEAQRRKKLEDEDTEYVGARTEISA