Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061564.t1 | XP_024633611.1 | 92 | 200 | 16 | 0 | 1 | 200 | 1 | 200 | 2.80E-99 | 371.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061564.t1 | Q6NLW5 | 41.9 | 86 | 35 | 3 | 119 | 200 | 226 | 300 | 1.5e-08 | 61.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061564.t1 | G7J8M9 | 92.0 | 200 | 16 | 0 | 1 | 200 | 75 | 274 | 2.0e-99 | 371.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene061564 | 0.844527 | 7.16E-59 | -1.69E-46 |
| MS.gene049254 | MS.gene061564 | 0.83909 | 1.95E-57 | -1.69E-46 |
| MS.gene049350 | MS.gene061564 | 0.862202 | 5.99E-64 | -1.69E-46 |
| MS.gene049368 | MS.gene061564 | 0.801247 | 9.85E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene061564 | 0.811393 | 7.16E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene061564 | 0.906338 | 1.65E-80 | -1.69E-46 |
| MS.gene049807 | MS.gene061564 | 0.84256 | 2.40E-58 | -1.69E-46 |
| MS.gene049824 | MS.gene061564 | 0.809632 | 1.72E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene061564 | 0.802134 | 6.48E-49 | -1.69E-46 |
| MS.gene050253 | MS.gene061564 | 0.81546 | 9.14E-52 | -1.69E-46 |
| MS.gene050414 | MS.gene061564 | 0.806621 | 7.53E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene061564 | 0.858207 | 9.65E-63 | -1.69E-46 |
| MS.gene050561 | MS.gene061564 | 0.851861 | 6.73E-61 | -1.69E-46 |
| MS.gene050562 | MS.gene061564 | 0.851562 | 8.19E-61 | -1.69E-46 |
| MS.gene050901 | MS.gene061564 | 0.821684 | 3.54E-53 | -1.69E-46 |
| MS.gene051201 | MS.gene061564 | 0.838645 | 2.54E-57 | -1.69E-46 |
| MS.gene051279 | MS.gene061564 | 0.842486 | 2.51E-58 | -1.69E-46 |
| MS.gene051628 | MS.gene061564 | 0.805716 | 1.17E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene061564 | 0.813903 | 2.02E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene061564 | 0.854862 | 9.28E-62 | -1.69E-46 |
| MS.gene051720 | MS.gene061564 | 0.846476 | 2.12E-59 | -1.69E-46 |
| MS.gene051744 | MS.gene061564 | 0.856827 | 2.47E-62 | -1.69E-46 |
| MS.gene052016 | MS.gene061564 | 0.80787 | 4.09E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene061564 | 0.811869 | 5.64E-51 | -1.69E-46 |
| MS.gene052239 | MS.gene061564 | -0.823729 | 1.18E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene061564 | 0.819607 | 1.06E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene061564 | 0.847193 | 1.35E-59 | -1.69E-46 |
| MS.gene052516 | MS.gene061564 | 0.825722 | 4.02E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene061564 | 0.800055 | 1.72E-48 | -1.69E-46 |
| MS.gene052533 | MS.gene061564 | 0.856175 | 3.84E-62 | -1.69E-46 |
| MS.gene052534 | MS.gene061564 | 0.80594 | 1.05E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene061564 | 0.800555 | 1.36E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene061564 | 0.815956 | 7.09E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene061564 | 0.80377 | 2.97E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene061564 | 0.814652 | 1.38E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene061564 | 0.836027 | 1.19E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene061564 | 0.853878 | 1.79E-61 | -1.69E-46 |
| MS.gene053581 | MS.gene061564 | 0.812051 | 5.15E-51 | -1.69E-46 |
| MS.gene053599 | MS.gene061564 | 0.827633 | 1.40E-54 | -1.69E-46 |
| MS.gene05364 | MS.gene061564 | 0.822687 | 2.07E-53 | -1.69E-46 |
| MS.gene054142 | MS.gene061564 | 0.810594 | 1.07E-50 | -1.69E-46 |
| MS.gene054178 | MS.gene061564 | 0.805669 | 1.19E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene061564 | 0.818057 | 2.39E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene061564 | 0.81157 | 6.55E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene061564 | 0.834385 | 3.09E-56 | -1.69E-46 |
| MS.gene05458 | MS.gene061564 | 0.839935 | 1.18E-57 | -1.69E-46 |
| MS.gene054651 | MS.gene061564 | 0.835098 | 2.04E-56 | -1.69E-46 |
| MS.gene055083 | MS.gene061564 | 0.818055 | 2.39E-52 | -1.69E-46 |
| MS.gene055144 | MS.gene061564 | 0.83207 | 1.17E-55 | -1.69E-46 |
| MS.gene055386 | MS.gene061564 | 0.807685 | 4.48E-50 | -1.69E-46 |
| MS.gene05538 | MS.gene061564 | 0.813274 | 2.78E-51 | -1.69E-46 |
| MS.gene05539 | MS.gene061564 | 0.817034 | 4.07E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene061564 | 0.806808 | 6.87E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene061564 | 0.801633 | 8.21E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene061564 | 0.80068 | 1.29E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene061564 | 0.834233 | 3.37E-56 | -1.69E-46 |
| MS.gene055537 | MS.gene061564 | 0.832981 | 6.93E-56 | -1.69E-46 |
| MS.gene055580 | MS.gene061564 | -0.80753 | 4.83E-50 | -1.69E-46 |
| MS.gene056005 | MS.gene061564 | 0.801533 | 8.61E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene061564 | 0.831634 | 1.49E-55 | -1.69E-46 |
| MS.gene056082 | MS.gene061564 | 0.807139 | 5.85E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene061564 | 0.833871 | 4.16E-56 | -1.69E-46 |
| MS.gene056699 | MS.gene061564 | 0.817395 | 3.37E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene061564 | 0.860038 | 2.73E-63 | -1.69E-46 |
| MS.gene057102 | MS.gene061564 | 0.85078 | 1.36E-60 | -1.69E-46 |
| MS.gene057208 | MS.gene061564 | 0.804673 | 1.93E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene061564 | 0.802061 | 6.71E-49 | -1.69E-46 |
| MS.gene058492 | MS.gene061564 | 0.812097 | 5.03E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene061564 | 0.825268 | 5.14E-54 | -1.69E-46 |
| MS.gene058668 | MS.gene061564 | 0.813139 | 2.98E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene061564 | 0.802622 | 5.14E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene061564 | 0.82256 | 2.22E-53 | -1.69E-46 |
| MS.gene059015 | MS.gene061564 | 0.808939 | 2.42E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene061564 | 0.822807 | 1.94E-53 | -1.69E-46 |
| MS.gene059634 | MS.gene061564 | 0.811518 | 6.73E-51 | -1.69E-46 |
| MS.gene059778 | MS.gene061564 | 0.801083 | 1.06E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene061564 | -0.849992 | 2.26E-60 | -1.69E-46 |
| MS.gene059965 | MS.gene061564 | 0.827688 | 1.36E-54 | -1.69E-46 |
| MS.gene060519 | MS.gene061564 | 0.839569 | 1.47E-57 | -1.69E-46 |
| MS.gene060525 | MS.gene061564 | 0.848895 | 4.58E-60 | -1.69E-46 |
| MS.gene060603 | MS.gene061564 | 0.80929 | 2.04E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene061564 | 0.804564 | 2.03E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene061564 | 0.831892 | 1.29E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene061564 | 0.836105 | 1.14E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene061564 | 0.834051 | 3.75E-56 | -1.69E-46 |
| MS.gene061160 | MS.gene061564 | 0.804345 | 2.26E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene061564 | 0.81999 | 8.69E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061564.t1 | MTR_3g064750 | 92.000 | 200 | 16 | 0 | 1 | 200 | 75 | 274 | 4.18e-137 | 384 |
| MS.gene061564.t1 | MTR_3g064750 | 82.927 | 123 | 18 | 1 | 1 | 123 | 75 | 194 | 1.62e-68 | 208 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061564.t1 | AT2G01990 | 37.745 | 204 | 96 | 6 | 21 | 200 | 17 | 213 | 7.66e-33 | 117 |
| MS.gene061564.t1 | AT2G01990 | 37.745 | 204 | 96 | 6 | 21 | 200 | 48 | 244 | 2.29e-32 | 117 |
| MS.gene061564.t1 | AT1G14630 | 37.968 | 187 | 101 | 5 | 21 | 200 | 48 | 226 | 8.16e-29 | 107 |
| MS.gene061564.t1 | AT5G48720 | 41.860 | 86 | 35 | 3 | 119 | 200 | 226 | 300 | 1.04e-11 | 62.8 |
| MS.gene061564.t1 | AT5G48720 | 41.860 | 86 | 35 | 3 | 119 | 200 | 226 | 300 | 1.04e-11 | 62.8 |
| MS.gene061564.t1 | AT5G48720 | 41.860 | 86 | 35 | 3 | 119 | 200 | 192 | 266 | 1.23e-11 | 62.4 |
| MS.gene061564.t1 | AT5G48720 | 41.860 | 86 | 35 | 3 | 119 | 200 | 192 | 266 | 1.23e-11 | 62.4 |
Find 48 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCGTGGTTATGGTATTTC+AGG | 0.166700 | 3.2:+60262293 | MS.gene061564:CDS |
| TATACATACCTTGAAGTAAT+TGG | 0.169435 | 3.2:-60261565 | None:intergenic |
| CAATCACTGGCTGGGATATT+TGG | 0.233908 | 3.2:+60261333 | MS.gene061564:CDS |
| TTTCCTTTCCTCCATGGAAT+TGG | 0.298126 | 3.2:+60260734 | None:intergenic |
| GAGGCTCCATTACCATTATT+AGG | 0.327547 | 3.2:+60262357 | MS.gene061564:CDS |
| TCAACCTTTAGTCCTAATAA+TGG | 0.328259 | 3.2:-60262369 | None:intergenic |
| TTGAAGTAATTGGGCTGCTT+TGG | 0.351121 | 3.2:-60261555 | None:intergenic |
| GGATGTGGAATTGGCTTTGA+TGG | 0.358593 | 3.2:-60262230 | None:intergenic |
| TGTATTTCAAACCGTGGTTA+TGG | 0.360210 | 3.2:+60262284 | MS.gene061564:CDS |
| ACAGCCACAGGATGTGGAAT+TGG | 0.391650 | 3.2:-60262239 | None:intergenic |
| ACTCATTCAGATTTAACTCT+TGG | 0.392699 | 3.2:+60260768 | MS.gene061564:CDS |
| GAAGAAAATGTTGGAAATAG+AGG | 0.396185 | 3.2:-60261533 | None:intergenic |
| CCAGGTTTCACCAGCTCAAA+TGG | 0.402015 | 3.2:-60262152 | None:intergenic |
| ATGGACTCATCATCATTTGA+TGG | 0.411072 | 3.2:-60262211 | None:intergenic |
| CTAGATGCACAACTTCTTTG+AGG | 0.413057 | 3.2:-60261943 | None:intergenic |
| ATTACCATTATTAGGACTAA+AGG | 0.415904 | 3.2:+60262365 | MS.gene061564:CDS |
| GTTTCCCCTTCAACTCCTCC+AGG | 0.422860 | 3.2:-60262170 | None:intergenic |
| CCATTTGAGCTGGTGAAACC+TGG | 0.428678 | 3.2:+60262152 | MS.gene061564:CDS |
| ATACATACCTTGAAGTAATT+GGG | 0.433333 | 3.2:-60261564 | None:intergenic |
| AAGAAGTGGCAGCACTTACT+AGG | 0.434363 | 3.2:+60262318 | MS.gene061564:CDS |
| TTGAAGATGCAATCACTGGC+TGG | 0.441092 | 3.2:+60261324 | MS.gene061564:CDS |
| TTTAGTCCTAATAATGGTAA+TGG | 0.443297 | 3.2:-60262363 | None:intergenic |
| GTGAAACCTGGAGGAGTTGA+AGG | 0.448286 | 3.2:+60262164 | MS.gene061564:CDS |
| GTGCTTCTACAGCTGAGTCT+TGG | 0.458655 | 3.2:+60261273 | MS.gene061564:intron |
| AACCTACTCTCAAGATCAAA+AGG | 0.460972 | 3.2:+60261376 | MS.gene061564:CDS |
| AAAGCAGCCCAATTACTTCA+AGG | 0.465374 | 3.2:+60261557 | MS.gene061564:CDS |
| TCTTCTACAGCCACAGGATG+TGG | 0.472074 | 3.2:-60262245 | None:intergenic |
| CACTTACTAGGATTCAAACT+AGG | 0.484716 | 3.2:+60262330 | MS.gene061564:CDS |
| GATTCCAATGTCCAATTCCA+TGG | 0.514674 | 3.2:-60260745 | None:intergenic |
| ACTTACTAGGATTCAAACTA+GGG | 0.519902 | 3.2:+60262331 | MS.gene061564:CDS |
| TCCTCCATGGAATTGGACAT+TGG | 0.529804 | 3.2:+60260741 | None:intergenic |
| AGGATTCAAACTAGGGGTAG+AGG | 0.539013 | 3.2:+60262338 | MS.gene061564:CDS |
| TAACCACGGTTTGAAATACA+TGG | 0.544046 | 3.2:-60262281 | None:intergenic |
| GCTGCTTTGGAAGAAAATGT+TGG | 0.550147 | 3.2:-60261542 | None:intergenic |
| TGAAGATGCAATCACTGGCT+GGG | 0.560320 | 3.2:+60261325 | MS.gene061564:CDS |
| AATAGCTTATCCATTTGAGC+TGG | 0.561873 | 3.2:+60262142 | MS.gene061564:CDS |
| ATAGAATCTTCTACAGCCAC+AGG | 0.564847 | 3.2:-60262251 | None:intergenic |
| TGAAACCTGGAGGAGTTGAA+GGG | 0.578494 | 3.2:+60262165 | MS.gene061564:CDS |
| TATCTTGAAGATGCAATCAC+TGG | 0.588676 | 3.2:+60261320 | MS.gene061564:CDS |
| TGGTATTTCAGGAAAAGAAG+TGG | 0.597344 | 3.2:+60262304 | MS.gene061564:CDS |
| CAAAGAAGTTGTGCATCTAG+AGG | 0.598019 | 3.2:+60261946 | MS.gene061564:CDS |
| TTTGCAGCTGATACATCAAG+TGG | 0.606270 | 3.2:+60261296 | MS.gene061564:CDS |
| TTCCTGAAATACCATAACCA+CGG | 0.632367 | 3.2:-60262295 | None:intergenic |
| AAAGCCAATTCCACATCCTG+TGG | 0.636787 | 3.2:+60262235 | MS.gene061564:CDS |
| CATCCATGTATTTCAAACCG+TGG | 0.645090 | 3.2:+60262278 | MS.gene061564:CDS |
| GAAACCTGGAGGAGTTGAAG+GGG | 0.660694 | 3.2:+60262166 | MS.gene061564:CDS |
| TTTGAGCTGGTGAAACCTGG+AGG | 0.684329 | 3.2:+60262155 | MS.gene061564:CDS |
| CTTACTAGGATTCAAACTAG+GGG | 0.738551 | 3.2:+60262332 | MS.gene061564:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAAAACAAAATGTT+TGG | + | chr3.2:60261499-60261518 | MS.gene061564:intron | 10.0% |
| !!! | CAATCATTTGAAAATAATTT+TGG | + | chr3.2:60261652-60261671 | MS.gene061564:intron | 15.0% |
| !!! | TAGGTTATTATTTCTAATTT+TGG | + | chr3.2:60261784-60261803 | MS.gene061564:intron | 15.0% |
| !! | TAACCTAAAGTTAAAATGTT+AGG | - | chr3.2:60261771-60261790 | None:intergenic | 20.0% |
| !!! | ATTATGTTTTGATGTAACTA+GGG | + | chr3.2:60262105-60262124 | MS.gene061564:intron | 20.0% |
| ! | ACCATAAAAAATTCAACACT+AGG | + | chr3.2:60261866-60261885 | MS.gene061564:CDS | 25.0% |
| ! | AGAAAAGAGAAATGAAATGA+TGG | - | chr3.2:60262046-60262065 | None:intergenic | 25.0% |
| ! | ATACATACCTTGAAGTAATT+GGG | - | chr3.2:60261567-60261586 | None:intergenic | 25.0% |
| ! | ATGAAACAGAGAAGATAAAT+TGG | - | chr3.2:60261691-60261710 | None:intergenic | 25.0% |
| ! | ATTACCATTATTAGGACTAA+AGG | + | chr3.2:60262365-60262384 | MS.gene061564:CDS | 25.0% |
| ! | CAATCATGTATTACTAGATT+TGG | + | chr3.2:60261624-60261643 | MS.gene061564:intron | 25.0% |
| ! | CTAAAGTTAAAATGTTAGGT+TGG | - | chr3.2:60261767-60261786 | None:intergenic | 25.0% |
| ! | CTAGTTACATCAAAACATAA+TGG | - | chr3.2:60262106-60262125 | None:intergenic | 25.0% |
| ! | TAATAAATCAGCAAGTGAAA+AGG | - | chr3.2:60260806-60260825 | None:intergenic | 25.0% |
| ! | TATACATACCTTGAAGTAAT+TGG | - | chr3.2:60261568-60261587 | None:intergenic | 25.0% |
| ! | TCAAAACATAATGGTACAAA+AGG | - | chr3.2:60262097-60262116 | None:intergenic | 25.0% |
| ! | TTCAATGTAATCACAAATGT+CGG | - | chr3.2:60261133-60261152 | None:intergenic | 25.0% |
| ! | TTCTGATTGAAGATATGTTT+CGG | + | chr3.2:60261071-60261090 | MS.gene061564:intron | 25.0% |
| ! | TTTAGTCCTAATAATGGTAA+TGG | - | chr3.2:60262366-60262385 | None:intergenic | 25.0% |
| !!! | CAACCTAACATTTTAACTTT+AGG | + | chr3.2:60261765-60261784 | MS.gene061564:intron | 25.0% |
| !!! | CATTATGTTTTGATGTAACT+AGG | + | chr3.2:60262104-60262123 | MS.gene061564:intron | 25.0% |
| !!! | TCCTAGTGTTGAATTTTTTA+TGG | - | chr3.2:60261870-60261889 | None:intergenic | 25.0% |
| !!! | TTATGTTTTGATGTAACTAG+GGG | + | chr3.2:60262106-60262125 | MS.gene061564:intron | 25.0% |
| ACTCATTCAGATTTAACTCT+TGG | + | chr3.2:60260768-60260787 | MS.gene061564:CDS | 30.0% | |
| ACTTACTAGGATTCAAACTA+GGG | + | chr3.2:60262331-60262350 | MS.gene061564:CDS | 30.0% | |
| ATATACTACTAGATGACACT+TGG | + | chr3.2:60260884-60260903 | MS.gene061564:intron | 30.0% | |
| ATTCTACTTGTTTGTGATCT+TGG | + | chr3.2:60260922-60260941 | MS.gene061564:intron | 30.0% | |
| CAAGTAGAATAAGATCATAG+TGG | - | chr3.2:60260912-60260931 | None:intergenic | 30.0% | |
| GAAGAAAATGTTGGAAATAG+AGG | - | chr3.2:60261536-60261555 | None:intergenic | 30.0% | |
| GATTCAGCAGCTATATAATA+AGG | + | chr3.2:60261718-60261737 | MS.gene061564:intron | 30.0% | |
| GTCATCTAGTAGTATATTCT+TGG | - | chr3.2:60260881-60260900 | None:intergenic | 30.0% | |
| TCAACCTTTAGTCCTAATAA+TGG | - | chr3.2:60262372-60262391 | None:intergenic | 30.0% | |
| TGTATATATATACACCCTTG+TGG | + | chr3.2:60261582-60261601 | MS.gene061564:intron | 30.0% | |
| !!! | TATGTTTTGATGTAACTAGG+GGG | + | chr3.2:60262107-60262126 | MS.gene061564:intron | 30.0% |
| AACAAAATGTTTGGTTGAGC+AGG | + | chr3.2:60261508-60261527 | MS.gene061564:intron | 35.0% | |
| AACCTACTCTCAAGATCAAA+AGG | + | chr3.2:60261376-60261395 | MS.gene061564:CDS | 35.0% | |
| AATAGCTTATCCATTTGAGC+TGG | + | chr3.2:60262142-60262161 | MS.gene061564:CDS | 35.0% | |
| AATCAGAAATGTCTGCAACA+AGG | - | chr3.2:60261059-60261078 | None:intergenic | 35.0% | |
| ATGGACTCATCATCATTTGA+TGG | - | chr3.2:60262214-60262233 | None:intergenic | 35.0% | |
| CACTTACTAGGATTCAAACT+AGG | + | chr3.2:60262330-60262349 | MS.gene061564:CDS | 35.0% | |
| CTTACTAGGATTCAAACTAG+GGG | + | chr3.2:60262332-60262351 | MS.gene061564:CDS | 35.0% | |
| GGTTAACTAACAACTATGCA+TGG | + | chr3.2:60261397-60261416 | MS.gene061564:intron | 35.0% | |
| TATCTTGAAGATGCAATCAC+TGG | + | chr3.2:60261320-60261339 | MS.gene061564:CDS | 35.0% | |
| TGGTATTTCAGGAAAAGAAG+TGG | + | chr3.2:60262304-60262323 | MS.gene061564:CDS | 35.0% | |
| TGTATTTCAAACCGTGGTTA+TGG | + | chr3.2:60262284-60262303 | MS.gene061564:CDS | 35.0% | |
| TTCCTGAAATACCATAACCA+CGG | - | chr3.2:60262298-60262317 | None:intergenic | 35.0% | |
| ! | AAAGTAATTTGCAGTGTCAG+TGG | - | chr3.2:60261839-60261858 | None:intergenic | 35.0% |
| ! | AACCTTTTGATCTTGAGAGT+AGG | - | chr3.2:60261381-60261400 | None:intergenic | 35.0% |
| ! | GTGACTTTTCTCAATCATGA+TGG | - | chr3.2:60260990-60261009 | None:intergenic | 35.0% |
| ! | TAACCACGGTTTGAAATACA+TGG | - | chr3.2:60262284-60262303 | None:intergenic | 35.0% |
| ! | TTTTGATCTTGAGAGTAGGT+TGG | - | chr3.2:60261377-60261396 | None:intergenic | 35.0% |
| !!! | GTCTGCTTATTTTGTCTCTA+TGG | + | chr3.2:60261251-60261270 | MS.gene061564:intron | 35.0% |
| AAAGCAGCCCAATTACTTCA+AGG | + | chr3.2:60261557-60261576 | MS.gene061564:CDS | 40.0% | |
| AACCGTGGTTATGGTATTTC+AGG | + | chr3.2:60262293-60262312 | MS.gene061564:CDS | 40.0% | |
| ATAGAATCTTCTACAGCCAC+AGG | - | chr3.2:60262254-60262273 | None:intergenic | 40.0% | |
| ATATACACCCTTGTGGAATG+TGG | + | chr3.2:60261589-60261608 | MS.gene061564:intron | 40.0% | |
| CAAAGAAGTTGTGCATCTAG+AGG | + | chr3.2:60261946-60261965 | MS.gene061564:CDS | 40.0% | |
| CATCCATGTATTTCAAACCG+TGG | + | chr3.2:60262278-60262297 | MS.gene061564:CDS | 40.0% | |
| CTAGATGCACAACTTCTTTG+AGG | - | chr3.2:60261946-60261965 | None:intergenic | 40.0% | |
| GAGGCTCCATTACCATTATT+AGG | + | chr3.2:60262357-60262376 | MS.gene061564:CDS | 40.0% | |
| TCACACTTTGAACCTTCTGA+CGG | + | chr3.2:60261006-60261025 | MS.gene061564:intron | 40.0% | |
| TTGAAGTAATTGGGCTGCTT+TGG | - | chr3.2:60261558-60261577 | None:intergenic | 40.0% | |
| TTTGCAGCTGATACATCAAG+TGG | + | chr3.2:60261296-60261315 | MS.gene061564:CDS | 40.0% | |
| !! | GCTGCTTTGGAAGAAAATGT+TGG | - | chr3.2:60261545-60261564 | None:intergenic | 40.0% |
| AAAGCCAATTCCACATCCTG+TGG | + | chr3.2:60262235-60262254 | MS.gene061564:CDS | 45.0% | |
| AAGAAGTGGCAGCACTTACT+AGG | + | chr3.2:60262318-60262337 | MS.gene061564:CDS | 45.0% | |
| AGGATTCAAACTAGGGGTAG+AGG | + | chr3.2:60262338-60262357 | MS.gene061564:CDS | 45.0% | |
| CAGCAAACACAACACTGACA+CGG | - | chr3.2:60261198-60261217 | None:intergenic | 45.0% | |
| GATGCAACCACATTCCACAA+GGG | - | chr3.2:60261599-60261618 | None:intergenic | 45.0% | |
| GTCTCTATGAAGCACAGACA+CGG | - | chr3.2:60261222-60261241 | None:intergenic | 45.0% | |
| TCTGCAACAAGGACTGAGTT+TGG | - | chr3.2:60261048-60261067 | None:intergenic | 45.0% | |
| TGAAACCTGGAGGAGTTGAA+GGG | + | chr3.2:60262165-60262184 | MS.gene061564:CDS | 45.0% | |
| TGATGCAACCACATTCCACA+AGG | - | chr3.2:60261600-60261619 | None:intergenic | 45.0% | |
| TTGAAGATGCAATCACTGGC+TGG | + | chr3.2:60261324-60261343 | MS.gene061564:CDS | 45.0% | |
| ! | CAATCACTGGCTGGGATATT+TGG | + | chr3.2:60261333-60261352 | MS.gene061564:CDS | 45.0% |
| ! | GTAATTTGCAGTGTCAGTGG+TGG | - | chr3.2:60261836-60261855 | None:intergenic | 45.0% |
| ! | TGAAGATGCAATCACTGGCT+GGG | + | chr3.2:60261325-60261344 | MS.gene061564:CDS | 45.0% |
| !! | GGATGTGGAATTGGCTTTGA+TGG | - | chr3.2:60262233-60262252 | None:intergenic | 45.0% |
| ACAGCCACAGGATGTGGAAT+TGG | - | chr3.2:60262242-60262261 | None:intergenic | 50.0% | |
| ATCACGACAACACCGTCAGA+AGG | - | chr3.2:60261021-60261040 | None:intergenic | 50.0% | |
| CCAGGTTTCACCAGCTCAAA+TGG | - | chr3.2:60262155-60262174 | None:intergenic | 50.0% | |
| CCATTTGAGCTGGTGAAACC+TGG | + | chr3.2:60262152-60262171 | MS.gene061564:CDS | 50.0% | |
| GAAACCTGGAGGAGTTGAAG+GGG | + | chr3.2:60262166-60262185 | MS.gene061564:CDS | 50.0% | |
| GTGAAACCTGGAGGAGTTGA+AGG | + | chr3.2:60262164-60262183 | MS.gene061564:CDS | 50.0% | |
| GTGCTTCTACAGCTGAGTCT+TGG | + | chr3.2:60261273-60261292 | MS.gene061564:intron | 50.0% | |
| TCTTCTACAGCCACAGGATG+TGG | - | chr3.2:60262248-60262267 | None:intergenic | 50.0% | |
| TGATGTAACTAGGGGGACAG+TGG | + | chr3.2:60262114-60262133 | MS.gene061564:intron | 50.0% | |
| TTTGAGCTGGTGAAACCTGG+AGG | + | chr3.2:60262155-60262174 | MS.gene061564:CDS | 50.0% | |
| CTGACACGGACACGTTGACA+CGG | - | chr3.2:60261184-60261203 | None:intergenic | 55.0% | |
| GTTTCCCCTTCAACTCCTCC+AGG | - | chr3.2:60262173-60262192 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 60260747 | 60262391 | 60260747 | ID=MS.gene061564 |
| chr3.2 | mRNA | 60260747 | 60262391 | 60260747 | ID=MS.gene061564.t1;Parent=MS.gene061564 |
| chr3.2 | exon | 60260747 | 60260789 | 60260747 | ID=MS.gene061564.t1.exon1;Parent=MS.gene061564.t1 |
| chr3.2 | CDS | 60260747 | 60260789 | 60260747 | ID=cds.MS.gene061564.t1;Parent=MS.gene061564.t1 |
| chr3.2 | exon | 60261285 | 60261397 | 60261285 | ID=MS.gene061564.t1.exon2;Parent=MS.gene061564.t1 |
| chr3.2 | CDS | 60261285 | 60261397 | 60261285 | ID=cds.MS.gene061564.t1;Parent=MS.gene061564.t1 |
| chr3.2 | exon | 60261530 | 60261578 | 60261530 | ID=MS.gene061564.t1.exon3;Parent=MS.gene061564.t1 |
| chr3.2 | CDS | 60261530 | 60261578 | 60261530 | ID=cds.MS.gene061564.t1;Parent=MS.gene061564.t1 |
| chr3.2 | exon | 60261866 | 60261997 | 60261866 | ID=MS.gene061564.t1.exon4;Parent=MS.gene061564.t1 |
| chr3.2 | CDS | 60261866 | 60261997 | 60261866 | ID=cds.MS.gene061564.t1;Parent=MS.gene061564.t1 |
| chr3.2 | exon | 60262126 | 60262391 | 60262126 | ID=MS.gene061564.t1.exon5;Parent=MS.gene061564.t1 |
| chr3.2 | CDS | 60262126 | 60262391 | 60262126 | ID=cds.MS.gene061564.t1;Parent=MS.gene061564.t1 |
| Gene Sequence |
| Protein sequence |
