Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062321.t1 | PNY16019.1 | 94 | 397 | 24 | 0 | 1 | 397 | 1 | 397 | 7.10E-155 | 557 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062321.t1 | Q9ZVU5 | 68.1 | 411 | 117 | 3 | 1 | 397 | 1 | 411 | 1.1e-132 | 474.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062321.t1 | A0A2K3PL60 | 94.0 | 397 | 24 | 0 | 1 | 397 | 1 | 397 | 5.1e-155 | 557.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene062321 | 0.852365 | 4.84E-61 | -1.69E-46 |
| MS.gene049159 | MS.gene062321 | 0.811944 | 5.43E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene062321 | 0.804118 | 2.52E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene062321 | 0.80124 | 9.88E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene062321 | 0.816634 | 5.00E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene062321 | 0.827708 | 1.35E-54 | -1.69E-46 |
| MS.gene049786 | MS.gene062321 | 0.809519 | 1.82E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene062321 | 0.802398 | 5.72E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene062321 | 0.841186 | 5.53E-58 | -1.69E-46 |
| MS.gene050317 | MS.gene062321 | 0.800848 | 1.19E-48 | -1.69E-46 |
| MS.gene050551 | MS.gene062321 | 0.820882 | 5.42E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene062321 | 0.803491 | 3.40E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene062321 | 0.85852 | 7.79E-63 | -1.69E-46 |
| MS.gene050689 | MS.gene062321 | 0.818266 | 2.14E-52 | -1.69E-46 |
| MS.gene050941 | MS.gene062321 | 0.832142 | 1.12E-55 | -1.69E-46 |
| MS.gene051003 | MS.gene062321 | 0.843966 | 1.01E-58 | -1.69E-46 |
| MS.gene051210 | MS.gene062321 | 0.801358 | 9.35E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene062321 | 0.818785 | 1.64E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene062321 | 0.801405 | 9.14E-49 | -1.69E-46 |
| MS.gene051363 | MS.gene062321 | 0.807775 | 4.29E-50 | -1.69E-46 |
| MS.gene051365 | MS.gene062321 | 0.812964 | 3.25E-51 | -1.69E-46 |
| MS.gene05188 | MS.gene062321 | 0.818518 | 1.88E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene062321 | 0.839805 | 1.27E-57 | -1.69E-46 |
| MS.gene052052 | MS.gene062321 | 0.806305 | 8.77E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene062321 | 0.808608 | 2.85E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene062321 | 0.817468 | 3.25E-52 | -1.69E-46 |
| MS.gene052342 | MS.gene062321 | 0.845261 | 4.54E-59 | -1.69E-46 |
| MS.gene052434 | MS.gene062321 | 0.829931 | 3.90E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene062321 | 0.839849 | 1.24E-57 | -1.69E-46 |
| MS.gene052516 | MS.gene062321 | 0.820378 | 7.08E-53 | -1.69E-46 |
| MS.gene052518 | MS.gene062321 | 0.839558 | 1.47E-57 | -1.69E-46 |
| MS.gene052863 | MS.gene062321 | 0.809746 | 1.62E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene062321 | 0.812976 | 3.23E-51 | -1.69E-46 |
| MS.gene053058 | MS.gene062321 | 0.816081 | 6.65E-52 | -1.69E-46 |
| MS.gene053079 | MS.gene062321 | 0.813439 | 2.56E-51 | -1.69E-46 |
| MS.gene053381 | MS.gene062321 | 0.807391 | 5.17E-50 | -1.69E-46 |
| MS.gene054472 | MS.gene062321 | 0.800784 | 1.23E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene062321 | 0.823615 | 1.26E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene062321 | 0.855559 | 5.82E-62 | -1.69E-46 |
| MS.gene054651 | MS.gene062321 | 0.809652 | 1.70E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene062321 | 0.837565 | 4.82E-57 | -1.69E-46 |
| MS.gene055311 | MS.gene062321 | 0.818305 | 2.10E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene062321 | 0.829532 | 4.88E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene062321 | 0.867844 | 1.01E-65 | -1.69E-46 |
| MS.gene055864 | MS.gene062321 | 0.810687 | 1.02E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene062321 | 0.804593 | 2.01E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene062321 | 0.853692 | 2.02E-61 | -1.69E-46 |
| MS.gene056308 | MS.gene062321 | 0.807225 | 5.61E-50 | -1.69E-46 |
| MS.gene056390 | MS.gene062321 | 0.825225 | 5.26E-54 | -1.69E-46 |
| MS.gene056509 | MS.gene062321 | 0.801513 | 8.69E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene062321 | 0.832877 | 7.36E-56 | -1.69E-46 |
| MS.gene056776 | MS.gene062321 | 0.803701 | 3.07E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene062321 | 0.808852 | 2.53E-50 | -1.69E-46 |
| MS.gene056831 | MS.gene062321 | 0.83818 | 3.35E-57 | -1.69E-46 |
| MS.gene056986 | MS.gene062321 | 0.81682 | 4.54E-52 | -1.69E-46 |
| MS.gene057034 | MS.gene062321 | 0.830318 | 3.14E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene062321 | 0.845967 | 2.92E-59 | -1.69E-46 |
| MS.gene057208 | MS.gene062321 | 0.814261 | 1.69E-51 | -1.69E-46 |
| MS.gene057360 | MS.gene062321 | 0.810778 | 9.73E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene062321 | 0.826076 | 3.31E-54 | -1.69E-46 |
| MS.gene058781 | MS.gene062321 | 0.804218 | 2.40E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene062321 | 0.811921 | 5.50E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene062321 | 0.842622 | 2.31E-58 | -1.69E-46 |
| MS.gene059170 | MS.gene062321 | 0.809332 | 1.99E-50 | -1.69E-46 |
| MS.gene059283 | MS.gene062321 | 0.8247 | 7.00E-54 | -1.69E-46 |
| MS.gene059842 | MS.gene062321 | 0.840306 | 9.41E-58 | -1.69E-46 |
| MS.gene059965 | MS.gene062321 | 0.820746 | 5.83E-53 | -1.69E-46 |
| MS.gene06010 | MS.gene062321 | 0.825353 | 4.91E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene062321 | 0.822662 | 2.10E-53 | -1.69E-46 |
| MS.gene060296 | MS.gene062321 | 0.803413 | 3.53E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene062321 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene060527 | MS.gene062321 | 0.805371 | 1.38E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene062321 | 0.826131 | 3.21E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene062321 | 0.820345 | 7.21E-53 | -1.69E-46 |
| MS.gene060777 | MS.gene062321 | 0.820446 | 6.83E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene062321 | 0.813507 | 2.47E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene062321 | 0.834286 | 3.27E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene062321 | 0.843733 | 1.17E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene062321 | 0.852467 | 4.53E-61 | -1.69E-46 |
| MS.gene061100 | MS.gene062321 | 0.809801 | 1.58E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene062321 | 0.803931 | 2.75E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062321.t1 | MTR_5g092130 | 99.497 | 398 | 1 | 1 | 1 | 397 | 1 | 398 | 0.0 | 816 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062321.t1 | AT1G55460 | 69.712 | 416 | 102 | 4 | 1 | 397 | 1 | 411 | 0.0 | 589 |
| MS.gene062321.t1 | AT5G51795 | 52.500 | 400 | 116 | 7 | 2 | 397 | 18 | 347 | 2.98e-129 | 375 |
Find 100 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCGAGTTTGTTAAGTATT+TGG | 0.117727 | 5.1:+73682997 | MS.gene062321:CDS |
| TTTCCTCTTCAAATTGTTCT+TGG | 0.203876 | 5.1:-73683392 | None:intergenic |
| AAAACAACAGGAAGGATTAT+TGG | 0.276799 | 5.1:+73683479 | MS.gene062321:CDS |
| TTCCTCTTCAAATTGTTCTT+GGG | 0.324116 | 5.1:-73683391 | None:intergenic |
| TTCTACATTTAGTTCCTTTG+TGG | 0.324733 | 5.1:-73683248 | None:intergenic |
| ACCGAGTTTGTTAAGTATTT+GGG | 0.337309 | 5.1:+73682998 | MS.gene062321:CDS |
| TCTCATCACGACACTGCTTC+TGG | 0.346818 | 5.1:-73682745 | None:intergenic |
| TAAGAGAATCAAGGCAGATT+TGG | 0.365371 | 5.1:+73683120 | MS.gene062321:CDS |
| TGATGCATCACCTGTTTCCT+TGG | 0.369482 | 5.1:-73683320 | None:intergenic |
| TGGATCACTTGCTAGGCTGC+TGG | 0.373691 | 5.1:+73683717 | MS.gene062321:CDS |
| GGATCACTTGCTAGGCTGCT+GGG | 0.394089 | 5.1:+73683718 | MS.gene062321:CDS |
| CAGCTTTGGAAGAAATGATC+AGG | 0.409479 | 5.1:+73683434 | MS.gene062321:CDS |
| ATTCGATTGGCAATTGCCTT+AGG | 0.412636 | 5.1:-73682677 | None:intergenic |
| AGCCCTCTATTATGCGGGTT+GGG | 0.416024 | 5.1:-73682832 | None:intergenic |
| GTAGAAGATGGAACTAAGAT+AGG | 0.418114 | 5.1:+73683265 | MS.gene062321:CDS |
| GCATGAGGGAATTGTTGTTA+AGG | 0.426449 | 5.1:+73683504 | MS.gene062321:CDS |
| GTTAAGTATTTGGGTCGAAC+TGG | 0.429382 | 5.1:+73683007 | MS.gene062321:CDS |
| AAACTGTGATACCACAGGTT+GGG | 0.432957 | 5.1:+73683662 | MS.gene062321:CDS |
| AAAGTGATTGACAAGTATGT+AGG | 0.434461 | 5.1:+73683583 | MS.gene062321:CDS |
| TTTAAGCACCCTACCATCAT+AGG | 0.436419 | 5.1:-73683788 | None:intergenic |
| GCCAATCGAATTAAAGCAAA+AGG | 0.442753 | 5.1:+73682689 | MS.gene062321:CDS |
| GCATGTGCTTAGAGTTGATC+AGG | 0.446284 | 5.1:+73683630 | MS.gene062321:CDS |
| TCACCTGTTTCCTTGGTCAC+AGG | 0.446502 | 5.1:-73683313 | None:intergenic |
| AAACCTGTGACCAAGGAAAC+AGG | 0.453479 | 5.1:+73683310 | MS.gene062321:CDS |
| CAAAAGGACTGCAGAAGCTT+CGG | 0.454838 | 5.1:+73682705 | MS.gene062321:CDS |
| AAGTGATTGACAAGTATGTA+GGG | 0.460918 | 5.1:+73683584 | MS.gene062321:CDS |
| GGGTCGAACTGGAAAGTGTA+AGG | 0.469244 | 5.1:+73683018 | MS.gene062321:CDS |
| AAATGATCAGGGAGGAAGAG+AGG | 0.471242 | 5.1:+73683446 | MS.gene062321:CDS |
| TAGCCCTCTATTATGCGGGT+TGG | 0.476411 | 5.1:-73682833 | None:intergenic |
| AGCAAAGTCTTGGCTGAGAA+GGG | 0.481164 | 5.1:+73683532 | MS.gene062321:CDS |
| AAGAGGAAAGAAAGCGGTGG+TGG | 0.490671 | 5.1:+73683406 | MS.gene062321:CDS |
| AAAAGTTGTCTCAAACTCTT+CGG | 0.492025 | 5.1:-73682858 | None:intergenic |
| TAAGGTTATGAGCAAAGTCT+TGG | 0.495364 | 5.1:+73683522 | MS.gene062321:CDS |
| CGGTGGTGGAAAATCAGCTT+TGG | 0.497541 | 5.1:+73683420 | MS.gene062321:CDS |
| CTGTGAAGGCTGATCAGACT+CGG | 0.500574 | 5.1:-73683218 | None:intergenic |
| GAAGGGGTACTACAAGCAAA+AGG | 0.501155 | 5.1:+73683549 | MS.gene062321:CDS |
| AAACCCAACCCGCATAATAG+AGG | 0.501550 | 5.1:+73682829 | MS.gene062321:CDS |
| AACTGTGATACCACAGGTTG+GGG | 0.504284 | 5.1:+73683663 | MS.gene062321:CDS |
| ATCACTTGCTAGGCTGCTGG+GGG | 0.509623 | 5.1:+73683720 | MS.gene062321:CDS |
| CAGCCACACGGCTGAATCGA+TGG | 0.509707 | 5.1:-73682901 | None:intergenic |
| AAGGAACTAAATGTAGAAGA+TGG | 0.517017 | 5.1:+73683253 | MS.gene062321:CDS |
| GTATGTAATGAACCATCCCT+TGG | 0.519009 | 5.1:-73683053 | None:intergenic |
| AGATTCAGAAACAGATTGAA+AGG | 0.519987 | 5.1:+73683167 | MS.gene062321:CDS |
| AGGAAACAGGTGATGCATCA+AGG | 0.521074 | 5.1:+73683323 | MS.gene062321:CDS |
| TTTGTGGTCTGTACCTGTGA+AGG | 0.523916 | 5.1:-73683232 | None:intergenic |
| ATCAGCTAAACCTGTGACCA+AGG | 0.528222 | 5.1:+73683303 | MS.gene062321:CDS |
| GGTTGATGAAGAGAAATATG+AGG | 0.528248 | 5.1:+73683360 | MS.gene062321:CDS |
| GGTATAGCCCTCTATTATGC+GGG | 0.528294 | 5.1:-73682837 | None:intergenic |
| GATGAAGAATAAGAGAATCA+AGG | 0.529532 | 5.1:+73683111 | MS.gene062321:CDS |
| ACAAATGTCTTCATATTCCA+CGG | 0.532224 | 5.1:-73683812 | None:intergenic |
| GATCACTTGCTAGGCTGCTG+GGG | 0.533089 | 5.1:+73683719 | MS.gene062321:CDS |
| CATATCGTGGATCACTTGCT+AGG | 0.538560 | 5.1:+73683710 | MS.gene062321:CDS |
| CTGTGGAATTCATATGAACA+TGG | 0.541883 | 5.1:-73682961 | None:intergenic |
| CGGTATAGCCCTCTATTATG+CGG | 0.542283 | 5.1:-73682838 | None:intergenic |
| CGAGTCTGATCAGCCTTCAC+AGG | 0.543285 | 5.1:+73683219 | MS.gene062321:CDS |
| ATAGAGAAAGGTGCCTATGA+TGG | 0.547381 | 5.1:+73683775 | MS.gene062321:CDS |
| AGAAAGGTGCCTATGATGGT+AGG | 0.549060 | 5.1:+73683779 | MS.gene062321:CDS |
| ATGAAGAGAAATATGAGGAA+AGG | 0.551859 | 5.1:+73683365 | MS.gene062321:CDS |
| GAAGGATTATTGGTTGCATG+AGG | 0.552788 | 5.1:+73683489 | MS.gene062321:CDS |
| AGATGAAGAAAAGCAAGAGA+AGG | 0.554060 | 5.1:+73683144 | MS.gene062321:CDS |
| GAAAGGTGCCTATGATGGTA+GGG | 0.555344 | 5.1:+73683780 | MS.gene062321:CDS |
| AAATGCCACTGCATGAGTGA+AGG | 0.558311 | 5.1:+73682776 | MS.gene062321:CDS |
| TATGTAATGAACCATCCCTT+GGG | 0.561780 | 5.1:-73683052 | None:intergenic |
| AAACGACTTCCTCACACCTA+AGG | 0.562559 | 5.1:+73682661 | MS.gene062321:CDS |
| AATGCCACTGCATGAGTGAA+GGG | 0.566370 | 5.1:+73682777 | MS.gene062321:CDS |
| GAGCAAAGTCTTGGCTGAGA+AGG | 0.567059 | 5.1:+73683531 | MS.gene062321:CDS |
| TTGAAGAAACGCCCAAGGGA+TGG | 0.570858 | 5.1:+73683041 | MS.gene062321:CDS |
| AAGCAGTGTCGTGATGAGAA+TGG | 0.571787 | 5.1:+73682749 | MS.gene062321:CDS |
| GGAAACAGGTGATGCATCAA+GGG | 0.579318 | 5.1:+73683324 | MS.gene062321:CDS |
| GCTAAGGTGCAGATAGAGAA+AGG | 0.581012 | 5.1:+73683763 | MS.gene062321:CDS |
| TGGCAATTGCCTTAGGTGTG+AGG | 0.582973 | 5.1:-73682670 | None:intergenic |
| GATTCAGAAACAGATTGAAA+GGG | 0.585483 | 5.1:+73683168 | MS.gene062321:CDS |
| GAAACTGTGATACCACAGGT+TGG | 0.587831 | 5.1:+73683661 | MS.gene062321:CDS |
| GGTGCCCTTCACTCATGCAG+TGG | 0.591698 | 5.1:-73682781 | None:intergenic |
| ATAGTCAACGGGGCATATCG+TGG | 0.596417 | 5.1:+73683697 | MS.gene062321:CDS |
| ATCCCAAGAACAATTTGAAG+AGG | 0.596749 | 5.1:+73683389 | MS.gene062321:CDS |
| AACCCAACCCGCATAATAGA+GGG | 0.598618 | 5.1:+73682830 | MS.gene062321:CDS |
| TCATATGAATTCCACAGAGT+GGG | 0.606090 | 5.1:+73682967 | MS.gene062321:CDS |
| AAGGGGTACTACAAGCAAAA+GGG | 0.608494 | 5.1:+73683550 | MS.gene062321:CDS |
| AAGGATTATTGGTTGCATGA+GGG | 0.619867 | 5.1:+73683490 | MS.gene062321:CDS |
| GCTTGAAACTGTGATACCAC+AGG | 0.619884 | 5.1:+73683657 | MS.gene062321:CDS |
| TGGTAGGGTGCTTAAAGCCG+TGG | 0.620762 | 5.1:+73683795 | MS.gene062321:CDS |
| AAGGACTGCAGAAGCTTCGG+TGG | 0.623632 | 5.1:+73682708 | MS.gene062321:CDS |
| CAGCCATCGATTCAGCCGTG+TGG | 0.624533 | 5.1:+73682898 | MS.gene062321:CDS |
| TTCATATGAATTCCACAGAG+TGG | 0.625116 | 5.1:+73682966 | MS.gene062321:CDS |
| TGTGAAGGCTGATCAGACTC+GGG | 0.626706 | 5.1:-73683217 | None:intergenic |
| TAAGGTTGAAGAAACGCCCA+AGG | 0.626739 | 5.1:+73683036 | MS.gene062321:CDS |
| AAACTACAGTTGCAGCCACA+CGG | 0.628128 | 5.1:-73682913 | None:intergenic |
| ACCCAAATACTTAACAAACT+CGG | 0.632340 | 5.1:-73682999 | None:intergenic |
| AGCTTTGGAAGAAATGATCA+GGG | 0.643174 | 5.1:+73683435 | MS.gene062321:CDS |
| AGTGATTGACAAGTATGTAG+GGG | 0.650139 | 5.1:+73683585 | MS.gene062321:CDS |
| GCAAAGTCTTGGCTGAGAAG+GGG | 0.659381 | 5.1:+73683533 | MS.gene062321:CDS |
| GGTGAGTGTAGCCCACTCTG+TGG | 0.700195 | 5.1:-73682978 | None:intergenic |
| TTGAAGAGGAAAGAAAGCGG+TGG | 0.711942 | 5.1:+73683403 | MS.gene062321:CDS |
| ATCAAGGGTAGTGTTTGATG+AGG | 0.718808 | 5.1:+73683339 | MS.gene062321:CDS |
| AAGGTTGAAGAAACGCCCAA+GGG | 0.739475 | 5.1:+73683037 | MS.gene062321:CDS |
| AATTTGAAGAGGAAAGAAAG+CGG | 0.747065 | 5.1:+73683400 | MS.gene062321:CDS |
| TTTGGAAGAAATGATCAGGG+AGG | 0.753882 | 5.1:+73683438 | MS.gene062321:CDS |
| TTCACAGGTACAGACCACAA+AGG | 0.767217 | 5.1:+73683234 | MS.gene062321:CDS |
| ACTGTGATACCACAGGTTGG+GGG | 0.767960 | 5.1:+73683664 | MS.gene062321:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAAGAAAAAAACAACAGGA+AGG | + | chr5.1:73683471-73683490 | MS.gene062321:CDS | 25.0% |
| ! | GGATAAAAGAAAAAAACAAC+AGG | + | chr5.1:73683467-73683486 | MS.gene062321:CDS | 25.0% |
| AAAACAACAGGAAGGATTAT+TGG | + | chr5.1:73683479-73683498 | MS.gene062321:CDS | 30.0% | |
| AAAAGTTGTCTCAAACTCTT+CGG | - | chr5.1:73682861-73682880 | None:intergenic | 30.0% | |
| AAAGTGATTGACAAGTATGT+AGG | + | chr5.1:73683583-73683602 | MS.gene062321:CDS | 30.0% | |
| AAGGAACTAAATGTAGAAGA+TGG | + | chr5.1:73683253-73683272 | MS.gene062321:CDS | 30.0% | |
| AAGTGATTGACAAGTATGTA+GGG | + | chr5.1:73683584-73683603 | MS.gene062321:CDS | 30.0% | |
| AATTTGAAGAGGAAAGAAAG+CGG | + | chr5.1:73683400-73683419 | MS.gene062321:CDS | 30.0% | |
| ACAAATGTCTTCATATTCCA+CGG | - | chr5.1:73683815-73683834 | None:intergenic | 30.0% | |
| ACCCAAATACTTAACAAACT+CGG | - | chr5.1:73683002-73683021 | None:intergenic | 30.0% | |
| AGATTCAGAAACAGATTGAA+AGG | + | chr5.1:73683167-73683186 | MS.gene062321:CDS | 30.0% | |
| ATGAAGAGAAATATGAGGAA+AGG | + | chr5.1:73683365-73683384 | MS.gene062321:CDS | 30.0% | |
| GATGAAGAATAAGAGAATCA+AGG | + | chr5.1:73683111-73683130 | MS.gene062321:CDS | 30.0% | |
| GATTCAGAAACAGATTGAAA+GGG | + | chr5.1:73683168-73683187 | MS.gene062321:CDS | 30.0% | |
| TTCCTCTTCAAATTGTTCTT+GGG | - | chr5.1:73683394-73683413 | None:intergenic | 30.0% | |
| TTTCCTCTTCAAATTGTTCT+TGG | - | chr5.1:73683395-73683414 | None:intergenic | 30.0% | |
| ! | ACTAAGATAGGATTTTCTCT+TGG | + | chr5.1:73683277-73683296 | MS.gene062321:CDS | 30.0% |
| ! | AGATTCAGAAACTCTTTTCA+AGG | + | chr5.1:73683084-73683103 | MS.gene062321:CDS | 30.0% |
| ! | TCCTTTTGCTTTAATTCGAT+TGG | - | chr5.1:73682693-73682712 | None:intergenic | 30.0% |
| ! | TTCTACATTTAGTTCCTTTG+TGG | - | chr5.1:73683251-73683270 | None:intergenic | 30.0% |
| !! | ACCGAGTTTGTTAAGTATTT+GGG | + | chr5.1:73682998-73683017 | MS.gene062321:CDS | 30.0% |
| AGATGAAGAAAAGCAAGAGA+AGG | + | chr5.1:73683144-73683163 | MS.gene062321:CDS | 35.0% | |
| AGTGATTGACAAGTATGTAG+GGG | + | chr5.1:73683585-73683604 | MS.gene062321:CDS | 35.0% | |
| ATCCCAAGAACAATTTGAAG+AGG | + | chr5.1:73683389-73683408 | MS.gene062321:CDS | 35.0% | |
| CAAAAATTTGCATTTGACGC+TGG | - | chr5.1:73682805-73682824 | None:intergenic | 35.0% | |
| CTGTGGAATTCATATGAACA+TGG | - | chr5.1:73682964-73682983 | None:intergenic | 35.0% | |
| GCCAATCGAATTAAAGCAAA+AGG | + | chr5.1:73682689-73682708 | MS.gene062321:CDS | 35.0% | |
| GTAGAAGATGGAACTAAGAT+AGG | + | chr5.1:73683265-73683284 | MS.gene062321:CDS | 35.0% | |
| TAAGAGAATCAAGGCAGATT+TGG | + | chr5.1:73683120-73683139 | MS.gene062321:CDS | 35.0% | |
| TAAGGTTATGAGCAAAGTCT+TGG | + | chr5.1:73683522-73683541 | MS.gene062321:CDS | 35.0% | |
| TATGTAATGAACCATCCCTT+GGG | - | chr5.1:73683055-73683074 | None:intergenic | 35.0% | |
| TCATATGAATTCCACAGAGT+GGG | + | chr5.1:73682967-73682986 | MS.gene062321:CDS | 35.0% | |
| TTCATATGAATTCCACAGAG+TGG | + | chr5.1:73682966-73682985 | MS.gene062321:CDS | 35.0% | |
| ! | AAGGATTATTGGTTGCATGA+GGG | + | chr5.1:73683490-73683509 | MS.gene062321:CDS | 35.0% |
| ! | CAGCGTCAAATGCAAATTTT+TGG | + | chr5.1:73682803-73682822 | MS.gene062321:CDS | 35.0% |
| !! | AGCTTTGGAAGAAATGATCA+GGG | + | chr5.1:73683435-73683454 | MS.gene062321:CDS | 35.0% |
| !! | CACCGAGTTTGTTAAGTATT+TGG | + | chr5.1:73682997-73683016 | MS.gene062321:CDS | 35.0% |
| !! | GGTTGATGAAGAGAAATATG+AGG | + | chr5.1:73683360-73683379 | MS.gene062321:CDS | 35.0% |
| !! | TACAGATCGTTTTTGTGCTA+AGG | + | chr5.1:73683747-73683766 | MS.gene062321:CDS | 35.0% |
| AAACTGTGATACCACAGGTT+GGG | + | chr5.1:73683662-73683681 | MS.gene062321:CDS | 40.0% | |
| ATCAAGGGTAGTGTTTGATG+AGG | + | chr5.1:73683339-73683358 | MS.gene062321:CDS | 40.0% | |
| ATTCGATTGGCAATTGCCTT+AGG | - | chr5.1:73682680-73682699 | None:intergenic | 40.0% | |
| CCGTGTAAAAATAGTCAACG+GGG | + | chr5.1:73683687-73683706 | MS.gene062321:CDS | 40.0% | |
| GCCGTGTAAAAATAGTCAAC+GGG | + | chr5.1:73683686-73683705 | MS.gene062321:CDS | 40.0% | |
| GGCCGTGTAAAAATAGTCAA+CGG | + | chr5.1:73683685-73683704 | MS.gene062321:CDS | 40.0% | |
| GTATGTAATGAACCATCCCT+TGG | - | chr5.1:73683056-73683075 | None:intergenic | 40.0% | |
| GTTAAGTATTTGGGTCGAAC+TGG | + | chr5.1:73683007-73683026 | MS.gene062321:CDS | 40.0% | |
| TTTAAGCACCCTACCATCAT+AGG | - | chr5.1:73683791-73683810 | None:intergenic | 40.0% | |
| TTTGGAAGAAATGATCAGGG+AGG | + | chr5.1:73683438-73683457 | MS.gene062321:CDS | 40.0% | |
| ! | GAAGGATTATTGGTTGCATG+AGG | + | chr5.1:73683489-73683508 | MS.gene062321:CDS | 40.0% |
| ! | GCATGAGGGAATTGTTGTTA+AGG | + | chr5.1:73683504-73683523 | MS.gene062321:CDS | 40.0% |
| !! | AAGGGGTACTACAAGCAAAA+GGG | + | chr5.1:73683550-73683569 | MS.gene062321:CDS | 40.0% |
| !! | ATAGAGAAAGGTGCCTATGA+TGG | + | chr5.1:73683775-73683794 | MS.gene062321:CDS | 40.0% |
| !! | CAGCTTTGGAAGAAATGATC+AGG | + | chr5.1:73683434-73683453 | MS.gene062321:CDS | 40.0% |
| !!! | CCCCGTTGACTATTTTTACA+CGG | - | chr5.1:73683690-73683709 | None:intergenic | 40.0% |
| AAACCCAACCCGCATAATAG+AGG | + | chr5.1:73682829-73682848 | MS.gene062321:CDS | 45.0% | |
| AAACCTGTGACCAAGGAAAC+AGG | + | chr5.1:73683310-73683329 | MS.gene062321:CDS | 45.0% | |
| AAACGACTTCCTCACACCTA+AGG | + | chr5.1:73682661-73682680 | MS.gene062321:CDS | 45.0% | |
| AAACTACAGTTGCAGCCACA+CGG | - | chr5.1:73682916-73682935 | None:intergenic | 45.0% | |
| AAATGATCAGGGAGGAAGAG+AGG | + | chr5.1:73683446-73683465 | MS.gene062321:CDS | 45.0% | |
| AAATGCCACTGCATGAGTGA+AGG | + | chr5.1:73682776-73682795 | MS.gene062321:CDS | 45.0% | |
| AACCCAACCCGCATAATAGA+GGG | + | chr5.1:73682830-73682849 | MS.gene062321:CDS | 45.0% | |
| AACTGTGATACCACAGGTTG+GGG | + | chr5.1:73683663-73683682 | MS.gene062321:CDS | 45.0% | |
| AAGCAGTGTCGTGATGAGAA+TGG | + | chr5.1:73682749-73682768 | MS.gene062321:CDS | 45.0% | |
| AAGGTTGAAGAAACGCCCAA+GGG | + | chr5.1:73683037-73683056 | MS.gene062321:CDS | 45.0% | |
| AATGCCACTGCATGAGTGAA+GGG | + | chr5.1:73682777-73682796 | MS.gene062321:CDS | 45.0% | |
| AGCAAAGTCTTGGCTGAGAA+GGG | + | chr5.1:73683532-73683551 | MS.gene062321:CDS | 45.0% | |
| AGGAAACAGGTGATGCATCA+AGG | + | chr5.1:73683323-73683342 | MS.gene062321:CDS | 45.0% | |
| ATCAGCTAAACCTGTGACCA+AGG | + | chr5.1:73683303-73683322 | MS.gene062321:CDS | 45.0% | |
| CAAAAGGACTGCAGAAGCTT+CGG | + | chr5.1:73682705-73682724 | MS.gene062321:CDS | 45.0% | |
| CATATCGTGGATCACTTGCT+AGG | + | chr5.1:73683710-73683729 | MS.gene062321:CDS | 45.0% | |
| CGGTATAGCCCTCTATTATG+CGG | - | chr5.1:73682841-73682860 | None:intergenic | 45.0% | |
| GAAACTGTGATACCACAGGT+TGG | + | chr5.1:73683661-73683680 | MS.gene062321:CDS | 45.0% | |
| GCTAAGGTGCAGATAGAGAA+AGG | + | chr5.1:73683763-73683782 | MS.gene062321:CDS | 45.0% | |
| GCTTGAAACTGTGATACCAC+AGG | + | chr5.1:73683657-73683676 | MS.gene062321:CDS | 45.0% | |
| GGAAACAGGTGATGCATCAA+GGG | + | chr5.1:73683324-73683343 | MS.gene062321:CDS | 45.0% | |
| GGTATAGCCCTCTATTATGC+GGG | - | chr5.1:73682840-73682859 | None:intergenic | 45.0% | |
| TAAGGTTGAAGAAACGCCCA+AGG | + | chr5.1:73683036-73683055 | MS.gene062321:CDS | 45.0% | |
| TGATGCATCACCTGTTTCCT+TGG | - | chr5.1:73683323-73683342 | None:intergenic | 45.0% | |
| TTCACAGGTACAGACCACAA+AGG | + | chr5.1:73683234-73683253 | MS.gene062321:CDS | 45.0% | |
| TTGAAGAGGAAAGAAAGCGG+TGG | + | chr5.1:73683403-73683422 | MS.gene062321:CDS | 45.0% | |
| TTTGTGGTCTGTACCTGTGA+AGG | - | chr5.1:73683235-73683254 | None:intergenic | 45.0% | |
| ! | GCATGTGCTTAGAGTTGATC+AGG | + | chr5.1:73683630-73683649 | MS.gene062321:CDS | 45.0% |
| !! | AGAAAGGTGCCTATGATGGT+AGG | + | chr5.1:73683779-73683798 | MS.gene062321:CDS | 45.0% |
| !! | GAAAGGTGCCTATGATGGTA+GGG | + | chr5.1:73683780-73683799 | MS.gene062321:CDS | 45.0% |
| !! | GAAGGGGTACTACAAGCAAA+AGG | + | chr5.1:73683549-73683568 | MS.gene062321:CDS | 45.0% |
| AAGAGGAAAGAAAGCGGTGG+TGG | + | chr5.1:73683406-73683425 | MS.gene062321:CDS | 50.0% | |
| AGCCCTCTATTATGCGGGTT+GGG | - | chr5.1:73682835-73682854 | None:intergenic | 50.0% | |
| ATAGTCAACGGGGCATATCG+TGG | + | chr5.1:73683697-73683716 | MS.gene062321:CDS | 50.0% | |
| CTGTGAAGGCTGATCAGACT+CGG | - | chr5.1:73683221-73683240 | None:intergenic | 50.0% | |
| GAGCAAAGTCTTGGCTGAGA+AGG | + | chr5.1:73683531-73683550 | MS.gene062321:CDS | 50.0% | |
| GCAAAGTCTTGGCTGAGAAG+GGG | + | chr5.1:73683533-73683552 | MS.gene062321:CDS | 50.0% | |
| TAGCCCTCTATTATGCGGGT+TGG | - | chr5.1:73682836-73682855 | None:intergenic | 50.0% | |
| TCACCTGTTTCCTTGGTCAC+AGG | - | chr5.1:73683316-73683335 | None:intergenic | 50.0% | |
| TCTCATCACGACACTGCTTC+TGG | - | chr5.1:73682748-73682767 | None:intergenic | 50.0% | |
| TGGCAATTGCCTTAGGTGTG+AGG | - | chr5.1:73682673-73682692 | None:intergenic | 50.0% | |
| TGTGAAGGCTGATCAGACTC+GGG | - | chr5.1:73683220-73683239 | None:intergenic | 50.0% | |
| TTGAAGAAACGCCCAAGGGA+TGG | + | chr5.1:73683041-73683060 | MS.gene062321:CDS | 50.0% | |
| ! | ACTGTGATACCACAGGTTGG+GGG | + | chr5.1:73683664-73683683 | MS.gene062321:CDS | 50.0% |
| ! | GGGTCGAACTGGAAAGTGTA+AGG | + | chr5.1:73683018-73683037 | MS.gene062321:CDS | 50.0% |
| !! | CGGTGGTGGAAAATCAGCTT+TGG | + | chr5.1:73683420-73683439 | MS.gene062321:CDS | 50.0% |
| AAGGACTGCAGAAGCTTCGG+TGG | + | chr5.1:73682708-73682727 | MS.gene062321:CDS | 55.0% | |
| CGAGTCTGATCAGCCTTCAC+AGG | + | chr5.1:73683219-73683238 | MS.gene062321:CDS | 55.0% | |
| ! | ATCACTTGCTAGGCTGCTGG+GGG | + | chr5.1:73683720-73683739 | MS.gene062321:CDS | 55.0% |
| ! | GATCACTTGCTAGGCTGCTG+GGG | + | chr5.1:73683719-73683738 | MS.gene062321:CDS | 55.0% |
| ! | GGATCACTTGCTAGGCTGCT+GGG | + | chr5.1:73683718-73683737 | MS.gene062321:CDS | 55.0% |
| ! | TGGATCACTTGCTAGGCTGC+TGG | + | chr5.1:73683717-73683736 | MS.gene062321:CDS | 55.0% |
| ! | TGGTAGGGTGCTTAAAGCCG+TGG | + | chr5.1:73683795-73683814 | MS.gene062321:CDS | 55.0% |
| CAGCCACACGGCTGAATCGA+TGG | - | chr5.1:73682904-73682923 | None:intergenic | 60.0% | |
| GGTGAGTGTAGCCCACTCTG+TGG | - | chr5.1:73682981-73683000 | None:intergenic | 60.0% | |
| GGTGCCCTTCACTCATGCAG+TGG | - | chr5.1:73682784-73682803 | None:intergenic | 60.0% | |
| TTTACACGGCCCCCAACCTG+TGG | - | chr5.1:73683676-73683695 | None:intergenic | 60.0% | |
| !! | CAGCCATCGATTCAGCCGTG+TGG | + | chr5.1:73682898-73682917 | MS.gene062321:CDS | 60.0% |
| ! | ACTTGCTAGGCTGCTGGGGG+TGG | + | chr5.1:73683723-73683742 | MS.gene062321:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 73682653 | 73683846 | 73682653 | ID=MS.gene062321 |
| chr5.1 | mRNA | 73682653 | 73683846 | 73682653 | ID=MS.gene062321.t1;Parent=MS.gene062321 |
| chr5.1 | exon | 73682653 | 73683846 | 73682653 | ID=MS.gene062321.t1.exon1;Parent=MS.gene062321.t1 |
| chr5.1 | CDS | 73682653 | 73683846 | 73682653 | ID=cds.MS.gene062321.t1;Parent=MS.gene062321.t1 |
| Gene Sequence |
| Protein sequence |
