Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25435.t1 | XP_013445749.1 | 100 | 233 | 0 | 0 | 1 | 233 | 50 | 282 | 8.80E-105 | 389.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25435.t1 | Q8LC03 | 65.1 | 232 | 77 | 2 | 6 | 233 | 63 | 294 | 6.7e-53 | 208.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25435.t1 | A0A072U1W4 | 100.0 | 233 | 0 | 0 | 1 | 233 | 50 | 282 | 6.4e-105 | 389.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene25435.t1 | TF | HB-HD-ZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene25435 | 0.818462 | 1.94E-52 | -1.69E-46 |
| MS.gene049190 | MS.gene25435 | 0.842459 | 2.55E-58 | -1.69E-46 |
| MS.gene049328 | MS.gene25435 | 0.801774 | 7.68E-49 | -1.69E-46 |
| MS.gene049340 | MS.gene25435 | 0.807864 | 4.10E-50 | -1.69E-46 |
| MS.gene049341 | MS.gene25435 | 0.857672 | 1.39E-62 | -1.69E-46 |
| MS.gene049404 | MS.gene25435 | 0.822486 | 2.31E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene25435 | 0.818983 | 1.47E-52 | -1.69E-46 |
| MS.gene049807 | MS.gene25435 | 0.834313 | 3.22E-56 | -1.69E-46 |
| MS.gene049808 | MS.gene25435 | 0.816673 | 4.90E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene25435 | 0.800619 | 1.32E-48 | -1.69E-46 |
| MS.gene049824 | MS.gene25435 | 0.80114 | 1.04E-48 | -1.69E-46 |
| MS.gene049850 | MS.gene25435 | 0.801505 | 8.73E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene25435 | 0.800798 | 1.22E-48 | -1.69E-46 |
| MS.gene050020 | MS.gene25435 | 0.849709 | 2.72E-60 | -1.69E-46 |
| MS.gene05016 | MS.gene25435 | 0.802783 | 4.76E-49 | -1.69E-46 |
| MS.gene050241 | MS.gene25435 | 0.809597 | 1.75E-50 | -1.69E-46 |
| MS.gene050586 | MS.gene25435 | 0.804163 | 2.46E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene25435 | 0.820697 | 5.98E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene25435 | 0.867581 | 1.23E-65 | -1.69E-46 |
| MS.gene050808 | MS.gene25435 | 0.827014 | 1.98E-54 | -1.69E-46 |
| MS.gene050901 | MS.gene25435 | 0.815928 | 7.19E-52 | -1.69E-46 |
| MS.gene051102 | MS.gene25435 | 0.815747 | 7.89E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene25435 | 0.811098 | 8.30E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene25435 | 0.826359 | 2.83E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene25435 | 0.830122 | 3.51E-55 | -1.69E-46 |
| MS.gene05157 | MS.gene25435 | 0.845148 | 4.87E-59 | -1.69E-46 |
| MS.gene051719 | MS.gene25435 | 0.864498 | 1.16E-64 | -1.69E-46 |
| MS.gene051720 | MS.gene25435 | 0.852668 | 3.97E-61 | -1.69E-46 |
| MS.gene051744 | MS.gene25435 | 0.821528 | 3.85E-53 | -1.69E-46 |
| MS.gene052020 | MS.gene25435 | 0.806033 | 1.00E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene25435 | 0.85027 | 1.89E-60 | -1.69E-46 |
| MS.gene052239 | MS.gene25435 | -0.811211 | 7.84E-51 | -1.69E-46 |
| MS.gene052514 | MS.gene25435 | 0.804023 | 2.64E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene25435 | 0.869803 | 2.35E-66 | -1.69E-46 |
| MS.gene052611 | MS.gene25435 | 0.82502 | 5.89E-54 | -1.69E-46 |
| MS.gene052612 | MS.gene25435 | 0.80569 | 1.18E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene25435 | 0.858353 | 8.73E-63 | -1.69E-46 |
| MS.gene052732 | MS.gene25435 | 0.853958 | 1.69E-61 | -1.69E-46 |
| MS.gene052879 | MS.gene25435 | 0.825676 | 4.12E-54 | -1.69E-46 |
| MS.gene052880 | MS.gene25435 | 0.812217 | 4.74E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene25435 | 0.812274 | 4.60E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene25435 | 0.874397 | 6.97E-68 | -1.69E-46 |
| MS.gene053174 | MS.gene25435 | 0.84002 | 1.12E-57 | -1.69E-46 |
| MS.gene053226 | MS.gene25435 | 0.801545 | 8.56E-49 | -1.69E-46 |
| MS.gene053565 | MS.gene25435 | 0.806186 | 9.30E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene25435 | 0.864174 | 1.47E-64 | -1.69E-46 |
| MS.gene053597 | MS.gene25435 | 0.808087 | 3.68E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene25435 | 0.844301 | 8.23E-59 | -1.69E-46 |
| MS.gene05364 | MS.gene25435 | 0.817965 | 2.51E-52 | -1.69E-46 |
| MS.gene053883 | MS.gene25435 | 0.809248 | 2.08E-50 | -1.69E-46 |
| MS.gene054550 | MS.gene25435 | 0.841259 | 5.29E-58 | -1.69E-46 |
| MS.gene054584 | MS.gene25435 | 0.874391 | 7.01E-68 | -1.69E-46 |
| MS.gene05462 | MS.gene25435 | 0.818818 | 1.61E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene25435 | 0.817402 | 3.36E-52 | -1.69E-46 |
| MS.gene054791 | MS.gene25435 | 0.809951 | 1.47E-50 | -1.69E-46 |
| MS.gene055144 | MS.gene25435 | 0.827654 | 1.39E-54 | -1.69E-46 |
| MS.gene055260 | MS.gene25435 | 0.801362 | 9.33E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene25435 | 0.870424 | 1.47E-66 | -1.69E-46 |
| MS.gene055466 | MS.gene25435 | 0.865922 | 4.15E-65 | -1.69E-46 |
| MS.gene055468 | MS.gene25435 | 0.855108 | 7.87E-62 | -1.69E-46 |
| MS.gene055469 | MS.gene25435 | 0.849778 | 2.60E-60 | -1.69E-46 |
| MS.gene055512 | MS.gene25435 | 0.840079 | 1.08E-57 | -1.69E-46 |
| MS.gene055537 | MS.gene25435 | 0.838884 | 2.21E-57 | -1.69E-46 |
| MS.gene055580 | MS.gene25435 | -0.861869 | 7.58E-64 | -1.69E-46 |
| MS.gene055890 | MS.gene25435 | 0.956767 | 1.35E-114 | -1.69E-46 |
| MS.gene055891 | MS.gene25435 | 0.937077 | 6.21E-98 | -1.69E-46 |
| MS.gene055912 | MS.gene25435 | 0.804416 | 2.18E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene25435 | -0.841885 | 3.62E-58 | -1.69E-46 |
| MS.gene056308 | MS.gene25435 | 0.830287 | 3.20E-55 | -1.69E-46 |
| MS.gene056366 | MS.gene25435 | 0.813799 | 2.13E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene25435 | 0.821619 | 3.67E-53 | -1.69E-46 |
| MS.gene056553 | MS.gene25435 | 0.8427 | 2.20E-58 | -1.69E-46 |
| MS.gene057132 | MS.gene25435 | 0.80043 | 1.45E-48 | -1.69E-46 |
| MS.gene057287 | MS.gene25435 | 0.808902 | 2.46E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene25435 | 0.804642 | 1.96E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene25435 | 0.815114 | 1.09E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene25435 | 0.802132 | 6.49E-49 | -1.69E-46 |
| MS.gene058087 | MS.gene25435 | 0.807708 | 4.43E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene25435 | 0.813235 | 2.84E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene25435 | 0.810169 | 1.32E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene25435 | 0.807484 | 4.94E-50 | -1.69E-46 |
| MS.gene058945 | MS.gene25435 | 0.826787 | 2.24E-54 | -1.69E-46 |
| MS.gene05894 | MS.gene25435 | 0.820461 | 6.78E-53 | -1.69E-46 |
| MS.gene059015 | MS.gene25435 | 0.837411 | 5.28E-57 | -1.69E-46 |
| MS.gene059154 | MS.gene25435 | 0.806274 | 8.91E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene25435 | 0.805577 | 1.25E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene25435 | 0.823707 | 1.20E-53 | -1.69E-46 |
| MS.gene059937 | MS.gene25435 | 0.842379 | 2.68E-58 | -1.69E-46 |
| MS.gene060194 | MS.gene25435 | 0.828495 | 8.71E-55 | -1.69E-46 |
| MS.gene060519 | MS.gene25435 | 0.826523 | 2.59E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene25435 | 0.871286 | 7.67E-67 | -1.69E-46 |
| MS.gene060603 | MS.gene25435 | 0.827985 | 1.16E-54 | -1.69E-46 |
| MS.gene060918 | MS.gene25435 | 0.80799 | 3.86E-50 | -1.69E-46 |
| MS.gene061176 | MS.gene25435 | 0.833916 | 4.05E-56 | -1.69E-46 |
| MS.gene061177 | MS.gene25435 | 0.831834 | 1.33E-55 | -1.69E-46 |
| MS.gene061178 | MS.gene25435 | 0.833555 | 4.99E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25435.t1 | MTR_8g468210 | 100.000 | 233 | 0 | 0 | 1 | 233 | 50 | 282 | 4.24e-173 | 477 |
| MS.gene25435.t1 | MTR_5g039000 | 85.232 | 237 | 30 | 4 | 1 | 233 | 48 | 283 | 2.15e-132 | 374 |
| MS.gene25435.t1 | MTR_7g010020 | 55.745 | 235 | 84 | 7 | 1 | 226 | 48 | 271 | 1.86e-74 | 227 |
| MS.gene25435.t1 | MTR_6g011610 | 53.689 | 244 | 70 | 8 | 1 | 230 | 58 | 272 | 7.52e-74 | 226 |
| MS.gene25435.t1 | MTR_6g011610 | 55.909 | 220 | 65 | 6 | 15 | 230 | 62 | 253 | 7.85e-73 | 222 |
| MS.gene25435.t1 | MTR_6g007647 | 64.000 | 100 | 36 | 0 | 24 | 123 | 29 | 128 | 8.95e-40 | 137 |
| MS.gene25435.t1 | MTR_6g007647 | 67.021 | 94 | 31 | 0 | 27 | 120 | 66 | 159 | 3.16e-39 | 137 |
| MS.gene25435.t1 | MTR_3g080100 | 48.276 | 174 | 67 | 4 | 15 | 173 | 7 | 172 | 3.23e-38 | 132 |
| MS.gene25435.t1 | MTR_3g080100 | 49.689 | 161 | 62 | 3 | 15 | 164 | 46 | 198 | 5.17e-38 | 133 |
| MS.gene25435.t1 | MTR_5g038280 | 66.667 | 96 | 32 | 0 | 28 | 123 | 87 | 182 | 2.08e-37 | 133 |
| MS.gene25435.t1 | MTR_4g107650 | 58.475 | 118 | 46 | 2 | 3 | 120 | 73 | 187 | 3.41e-37 | 133 |
| MS.gene25435.t1 | MTR_3g086790 | 56.911 | 123 | 46 | 2 | 1 | 123 | 40 | 155 | 3.96e-37 | 132 |
| MS.gene25435.t1 | MTR_8g089895 | 62.245 | 98 | 37 | 0 | 26 | 123 | 52 | 149 | 1.41e-36 | 130 |
| MS.gene25435.t1 | MTR_8g469430 | 65.625 | 96 | 33 | 0 | 28 | 123 | 89 | 184 | 1.43e-36 | 130 |
| MS.gene25435.t1 | MTR_7g103340 | 47.692 | 130 | 52 | 2 | 3 | 123 | 29 | 151 | 8.80e-33 | 119 |
| MS.gene25435.t1 | MTR_1g061660 | 52.830 | 106 | 41 | 2 | 16 | 121 | 49 | 145 | 3.74e-28 | 107 |
| MS.gene25435.t1 | MTR_3g092150 | 53.846 | 91 | 42 | 0 | 30 | 120 | 40 | 130 | 1.89e-27 | 105 |
| MS.gene25435.t1 | MTR_8g026960 | 38.000 | 150 | 82 | 3 | 35 | 173 | 41 | 190 | 3.96e-25 | 99.4 |
| MS.gene25435.t1 | MTR_4g100550 | 44.444 | 108 | 57 | 2 | 10 | 114 | 99 | 206 | 6.68e-20 | 86.3 |
| MS.gene25435.t1 | MTR_5g019680 | 47.778 | 90 | 47 | 0 | 28 | 117 | 53 | 142 | 1.76e-19 | 83.6 |
| MS.gene25435.t1 | MTR_5g019650 | 46.809 | 94 | 50 | 0 | 28 | 121 | 53 | 146 | 1.82e-19 | 84.0 |
| MS.gene25435.t1 | MTR_4g097600 | 45.263 | 95 | 52 | 0 | 20 | 114 | 119 | 213 | 9.30e-19 | 82.8 |
| MS.gene25435.t1 | MTR_7g093430 | 46.939 | 98 | 48 | 1 | 28 | 125 | 160 | 253 | 3.20e-18 | 82.0 |
| MS.gene25435.t1 | MTR_1g054285 | 42.609 | 115 | 62 | 1 | 11 | 125 | 137 | 247 | 5.08e-18 | 81.3 |
| MS.gene25435.t1 | MTR_5g014890 | 44.000 | 100 | 56 | 0 | 20 | 119 | 115 | 214 | 7.91e-18 | 80.5 |
| MS.gene25435.t1 | MTR_5g013010 | 40.708 | 113 | 66 | 1 | 3 | 114 | 110 | 222 | 1.05e-17 | 80.5 |
| MS.gene25435.t1 | MTR_2g061030 | 39.669 | 121 | 69 | 1 | 5 | 125 | 177 | 293 | 1.44e-17 | 80.5 |
| MS.gene25435.t1 | MTR_8g006705 | 48.276 | 87 | 45 | 0 | 28 | 114 | 146 | 232 | 2.53e-17 | 79.3 |
| MS.gene25435.t1 | MTR_4g126900 | 45.882 | 85 | 46 | 0 | 31 | 115 | 91 | 175 | 5.65e-17 | 77.0 |
| MS.gene25435.t1 | MTR_1g017090 | 45.455 | 88 | 48 | 0 | 28 | 115 | 130 | 217 | 1.54e-16 | 77.0 |
| MS.gene25435.t1 | MTR_4g084750 | 43.434 | 99 | 52 | 1 | 28 | 126 | 65 | 159 | 1.92e-15 | 72.4 |
| MS.gene25435.t1 | MTR_3g103590 | 48.611 | 72 | 37 | 0 | 28 | 99 | 145 | 216 | 3.64e-14 | 70.5 |
| MS.gene25435.t1 | MTR_2g038625 | 37.615 | 109 | 64 | 2 | 10 | 114 | 60 | 168 | 1.27e-11 | 62.4 |
| MS.gene25435.t1 | MTR_2g038580 | 37.615 | 109 | 64 | 2 | 10 | 114 | 60 | 168 | 1.27e-11 | 62.4 |
| MS.gene25435.t1 | MTR_5g013010 | 42.308 | 78 | 44 | 1 | 3 | 79 | 110 | 187 | 2.52e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25435.t1 | AT1G69780 | 67.364 | 239 | 60 | 5 | 6 | 233 | 63 | 294 | 2.95e-102 | 298 |
| MS.gene25435.t1 | AT1G26960 | 60.889 | 225 | 63 | 5 | 11 | 233 | 54 | 255 | 8.28e-86 | 255 |
| MS.gene25435.t1 | AT3G01220 | 53.425 | 219 | 78 | 6 | 15 | 226 | 72 | 273 | 6.50e-67 | 208 |
| MS.gene25435.t1 | AT5G15150 | 48.696 | 230 | 83 | 8 | 7 | 226 | 96 | 300 | 3.18e-59 | 189 |
| MS.gene25435.t1 | AT4G40060 | 57.576 | 132 | 52 | 2 | 10 | 137 | 39 | 170 | 1.14e-40 | 141 |
| MS.gene25435.t1 | AT5G65310 | 45.026 | 191 | 84 | 5 | 3 | 174 | 19 | 207 | 2.34e-40 | 140 |
| MS.gene25435.t1 | AT5G65310 | 45.026 | 191 | 84 | 5 | 3 | 174 | 37 | 225 | 2.94e-40 | 140 |
| MS.gene25435.t1 | AT2G22430 | 66.667 | 99 | 33 | 0 | 25 | 123 | 59 | 157 | 3.19e-39 | 137 |
| MS.gene25435.t1 | AT3G01470 | 65.979 | 97 | 33 | 0 | 24 | 120 | 64 | 160 | 4.32e-39 | 136 |
| MS.gene25435.t1 | AT1G27045 | 48.800 | 125 | 58 | 1 | 28 | 146 | 17 | 141 | 1.66e-28 | 106 |
| MS.gene25435.t1 | AT1G27045 | 48.800 | 125 | 58 | 1 | 28 | 146 | 25 | 149 | 1.71e-28 | 106 |
| MS.gene25435.t1 | AT1G27045 | 48.800 | 125 | 58 | 1 | 28 | 146 | 25 | 149 | 1.71e-28 | 106 |
| MS.gene25435.t1 | AT1G27045 | 45.517 | 145 | 71 | 2 | 10 | 146 | 48 | 192 | 2.10e-28 | 107 |
| MS.gene25435.t1 | AT2G46680 | 52.688 | 93 | 44 | 0 | 29 | 121 | 33 | 125 | 3.35e-28 | 107 |
| MS.gene25435.t1 | AT2G46680 | 53.333 | 90 | 42 | 0 | 29 | 118 | 33 | 122 | 1.75e-27 | 105 |
| MS.gene25435.t1 | AT1G27045 | 50.442 | 113 | 54 | 1 | 10 | 120 | 48 | 160 | 6.95e-27 | 104 |
| MS.gene25435.t1 | AT3G61890 | 51.111 | 90 | 44 | 0 | 31 | 120 | 33 | 122 | 5.92e-26 | 101 |
| MS.gene25435.t1 | AT5G03790 | 52.273 | 88 | 42 | 0 | 28 | 115 | 77 | 164 | 1.17e-24 | 97.8 |
| MS.gene25435.t1 | AT5G03790 | 55.000 | 80 | 36 | 0 | 28 | 107 | 77 | 156 | 7.99e-24 | 94.7 |
| MS.gene25435.t1 | AT2G36610 | 43.590 | 117 | 51 | 3 | 9 | 117 | 59 | 168 | 9.66e-23 | 91.7 |
| MS.gene25435.t1 | AT2G18550 | 46.341 | 123 | 56 | 3 | 28 | 147 | 61 | 176 | 1.12e-22 | 92.4 |
| MS.gene25435.t1 | AT4G36740 | 48.544 | 103 | 46 | 1 | 19 | 121 | 46 | 141 | 3.10e-22 | 91.3 |
| MS.gene25435.t1 | AT4G36740 | 48.544 | 103 | 46 | 1 | 19 | 121 | 47 | 142 | 3.20e-22 | 91.3 |
| MS.gene25435.t1 | AT5G66700 | 45.378 | 119 | 56 | 2 | 12 | 123 | 57 | 173 | 1.64e-21 | 89.4 |
| MS.gene25435.t1 | AT5G53980 | 44.554 | 101 | 56 | 0 | 23 | 123 | 6 | 106 | 3.71e-21 | 86.7 |
| MS.gene25435.t1 | AT2G01430 | 43.810 | 105 | 59 | 0 | 10 | 114 | 121 | 225 | 2.91e-18 | 81.6 |
| MS.gene25435.t1 | AT5G47370 | 42.708 | 96 | 55 | 0 | 20 | 115 | 122 | 217 | 2.70e-17 | 79.3 |
| MS.gene25435.t1 | AT4G37790 | 41.228 | 114 | 63 | 1 | 12 | 125 | 110 | 219 | 3.91e-17 | 78.6 |
| MS.gene25435.t1 | AT2G22800 | 46.667 | 90 | 48 | 0 | 26 | 115 | 111 | 200 | 5.40e-17 | 78.2 |
| MS.gene25435.t1 | AT5G06710 | 43.750 | 96 | 54 | 0 | 20 | 115 | 182 | 277 | 7.99e-17 | 78.6 |
| MS.gene25435.t1 | AT4G17460 | 43.000 | 100 | 55 | 1 | 15 | 114 | 124 | 221 | 1.14e-16 | 77.4 |
| MS.gene25435.t1 | AT3G60390 | 42.991 | 107 | 57 | 1 | 15 | 121 | 149 | 251 | 1.58e-16 | 77.4 |
| MS.gene25435.t1 | AT1G70920 | 37.903 | 124 | 69 | 2 | 8 | 131 | 50 | 165 | 3.63e-15 | 72.0 |
| MS.gene25435.t1 | AT1G70920 | 37.903 | 124 | 69 | 2 | 8 | 131 | 20 | 135 | 4.44e-15 | 71.2 |
| MS.gene25435.t1 | AT2G44910 | 44.681 | 94 | 48 | 1 | 28 | 121 | 163 | 252 | 5.16e-15 | 73.2 |
| MS.gene25435.t1 | AT4G16780 | 44.681 | 94 | 48 | 1 | 28 | 121 | 129 | 218 | 9.00e-15 | 72.0 |
| MS.gene25435.t1 | AT2G01430 | 50.704 | 71 | 35 | 0 | 10 | 80 | 121 | 191 | 1.31e-13 | 67.8 |
Find 39 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTCTGTTTCTTTATTA+AGG | 0.139873 | 8.3:-42279130 | None:intergenic |
| CTGAATGTCTTGTCTTGAAT+TGG | 0.288821 | 8.3:-42279309 | None:intergenic |
| AAGACAATATGATACTATTA+AGG | 0.363112 | 8.3:+42278384 | MS.gene25435:CDS |
| AACCAAGACAGATTGCTATA+TGG | 0.383913 | 8.3:+42278299 | MS.gene25435:CDS |
| TCCGATGATGGATCGCAGTT+AGG | 0.391738 | 8.3:+42278160 | MS.gene25435:CDS |
| GTCTTGAAGAAGATGGAAAT+AGG | 0.399749 | 8.3:-42279256 | None:intergenic |
| CCGATGATGGATCGCAGTTA+GGG | 0.414857 | 8.3:+42278161 | MS.gene25435:CDS |
| ATGCAGCTAGCAAGGGCTCT+TGG | 0.429987 | 8.3:+42278271 | MS.gene25435:CDS |
| TGGATGATCAATCTGGACTA+TGG | 0.444127 | 8.3:+42279390 | MS.gene25435:CDS |
| CCATCTTCTTCAAGACCAGC+AGG | 0.460199 | 8.3:+42279263 | MS.gene25435:CDS |
| CTTGTCTGTTGAGTAGATAA+AGG | 0.476490 | 8.3:-42279227 | None:intergenic |
| AGCTGATGAGGAACTCCTGC+TGG | 0.491266 | 8.3:-42279278 | None:intergenic |
| TGTGCCATGGATGATCAATC+TGG | 0.494499 | 8.3:+42279383 | MS.gene25435:CDS |
| CCCTAACTGCGATCCATCAT+CGG | 0.502143 | 8.3:-42278161 | None:intergenic |
| CTATATGGTTTCAAAACAGA+AGG | 0.506981 | 8.3:+42278314 | MS.gene25435:CDS |
| CCTGCTGGTCTTGAAGAAGA+TGG | 0.521993 | 8.3:-42279263 | None:intergenic |
| ATCTGGACTATGGCCATGGT+TGG | 0.522424 | 8.3:+42279400 | MS.gene25435:CDS |
| AACCATATAGCAATCTGTCT+TGG | 0.526039 | 8.3:-42278301 | None:intergenic |
| AGAGGAAAATGCAGCTAGCA+AGG | 0.526858 | 8.3:+42278263 | MS.gene25435:CDS |
| TTAAGGTTGATTGATTCAGT+TGG | 0.542418 | 8.3:-42279113 | None:intergenic |
| GAGGAAGAATTATCCGATGA+TGG | 0.563562 | 8.3:+42278148 | MS.gene25435:CDS |
| GGTTTCAAAACAGAAGGGCT+AGG | 0.568856 | 8.3:+42278320 | MS.gene25435:CDS |
| TAGTCCAGATTGATCATCCA+TGG | 0.576768 | 8.3:-42279387 | None:intergenic |
| GTGTCAAAAGATTGATCACA+TGG | 0.589732 | 8.3:+42279331 | MS.gene25435:CDS |
| TTGGTTTGAAAGAGCTGATG+AGG | 0.592238 | 8.3:-42279290 | None:intergenic |
| AACCTTAATAAAGAAACAGA+AGG | 0.601474 | 8.3:+42279128 | MS.gene25435:CDS |
| GAAGAAGAGAAGGCTTAACA+TGG | 0.612268 | 8.3:+42278186 | MS.gene25435:CDS |
| ATCAATCTGGACTATGGCCA+TGG | 0.615676 | 8.3:+42279396 | MS.gene25435:CDS |
| AGTTAGGGGAGAAGAAGAGA+AGG | 0.616244 | 8.3:+42278176 | MS.gene25435:CDS |
| AAACAGTTCAGATATCAAGC+TGG | 0.622724 | 8.3:+42279172 | MS.gene25435:CDS |
| TAGGTGGAAGACAAAACAGT+TGG | 0.622940 | 8.3:+42278339 | MS.gene25435:CDS |
| TATATGGTTTCAAAACAGAA+GGG | 0.626685 | 8.3:+42278315 | MS.gene25435:CDS |
| GAGGAAAATGCAGCTAGCAA+GGG | 0.631443 | 8.3:+42278264 | MS.gene25435:CDS |
| AAGTGCTGTTGCTCCAACCA+TGG | 0.633621 | 8.3:-42279413 | None:intergenic |
| CGATGATGGATCGCAGTTAG+GGG | 0.649440 | 8.3:+42278162 | MS.gene25435:CDS |
| GAAACAAGCTTGAACCTGAG+AGG | 0.652955 | 8.3:+42278245 | MS.gene25435:CDS |
| TGGAGAAGAAGCTAATGTCG+AGG | 0.659865 | 8.3:+42278129 | MS.gene25435:CDS |
| TTCAAAACAGAAGGGCTAGG+TGG | 0.663747 | 8.3:+42278323 | MS.gene25435:CDS |
| TCAAGCTGGATATTTCAACA+AGG | 0.727961 | 8.3:+42279186 | MS.gene25435:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCTTTTTATATTCAAA+AGG | - | chr8.3:42278802-42278821 | None:intergenic | 10.0% |
| !! | TTATAAAAGTTATCATTAGT+TGG | - | chr8.3:42278867-42278886 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGCTTTTTACTTA+TGG | + | chr8.3:42279020-42279039 | MS.gene25435:intron | 15.0% |
| !!! | TTAATTTTTTTACCAAAATG+AGG | - | chr8.3:42278959-42278978 | None:intergenic | 15.0% |
| !! | AAATTGATGAAAGGAAATAA+AGG | - | chr8.3:42278842-42278861 | None:intergenic | 20.0% |
| !! | AAGACAATATGATACTATTA+AGG | + | chr8.3:42278384-42278403 | MS.gene25435:CDS | 20.0% |
| !! | CATTGAAAATTAGTAACATT+TGG | - | chr8.3:42279059-42279078 | None:intergenic | 20.0% |
| !! | GACACATAAATTAACAAATA+TGG | - | chr8.3:42278626-42278645 | None:intergenic | 20.0% |
| !!! | AACTTTTTATTCTTTACTCA+TGG | + | chr8.3:42278465-42278484 | MS.gene25435:intron | 20.0% |
| ! | AACCTTAATAAAGAAACAGA+AGG | + | chr8.3:42279128-42279147 | MS.gene25435:CDS | 25.0% |
| ! | TATATGGTTTCAAAACAGAA+GGG | + | chr8.3:42278315-42278334 | MS.gene25435:CDS | 25.0% |
| !! | ATCCTTCTGTTTCTTTATTA+AGG | - | chr8.3:42279133-42279152 | None:intergenic | 25.0% |
| !!! | CTTTTAGAACAACATTAGAT+TGG | - | chr8.3:42278554-42278573 | None:intergenic | 25.0% |
| !!! | GTAAAAAGCTTTTTTTTGCT+TGG | - | chr8.3:42279017-42279036 | None:intergenic | 25.0% |
| AAAGAAAACATGTCATTGAG+TGG | - | chr8.3:42278926-42278945 | None:intergenic | 30.0% | |
| CTATATGGTTTCAAAACAGA+AGG | + | chr8.3:42278314-42278333 | MS.gene25435:CDS | 30.0% | |
| GAAAGTAACTGTGTAATGAT+AGG | - | chr8.3:42278904-42278923 | None:intergenic | 30.0% | |
| ! | ATGACATGTTTTCTTTTGCA+TGG | + | chr8.3:42278930-42278949 | MS.gene25435:intron | 30.0% |
| ! | CAAGAGATGTTCAAGTATTT+TGG | + | chr8.3:42278681-42278700 | MS.gene25435:intron | 30.0% |
| ! | TTAAGGTTGATTGATTCAGT+TGG | - | chr8.3:42279116-42279135 | None:intergenic | 30.0% |
| !! | TAGTTGGTGAAATTGATGAA+AGG | - | chr8.3:42278851-42278870 | None:intergenic | 30.0% |
| AAACAGTTCAGATATCAAGC+TGG | + | chr8.3:42279172-42279191 | MS.gene25435:CDS | 35.0% | |
| AACCAAGACAGATTGCTATA+TGG | + | chr8.3:42278299-42278318 | MS.gene25435:CDS | 35.0% | |
| AACCATATAGCAATCTGTCT+TGG | - | chr8.3:42278304-42278323 | None:intergenic | 35.0% | |
| CTGAATGTCTTGTCTTGAAT+TGG | - | chr8.3:42279312-42279331 | None:intergenic | 35.0% | |
| CTTGTCTGTTGAGTAGATAA+AGG | - | chr8.3:42279230-42279249 | None:intergenic | 35.0% | |
| GAATCAAAAACTTCAGACTG+AGG | + | chr8.3:42278432-42278451 | MS.gene25435:CDS | 35.0% | |
| GTCTTGAAGAAGATGGAAAT+AGG | - | chr8.3:42279259-42279278 | None:intergenic | 35.0% | |
| GTGTCAAAAGATTGATCACA+TGG | + | chr8.3:42279331-42279350 | MS.gene25435:CDS | 35.0% | |
| TCAAGCTGGATATTTCAACA+AGG | + | chr8.3:42279186-42279205 | MS.gene25435:CDS | 35.0% | |
| ! | TCAATGCTTGTTGCAGATAT+TGG | + | chr8.3:42279073-42279092 | MS.gene25435:intron | 35.0% |
| ! | TTTGCATGGTTTCCTCATTT+TGG | + | chr8.3:42278944-42278963 | MS.gene25435:intron | 35.0% |
| !! | TCATTTTCAGGGATAGAACT+TGG | + | chr8.3:42278109-42278128 | MS.gene25435:CDS | 35.0% |
| !!! | CTTGAGAAGAGTTTTGAGTT+AGG | + | chr8.3:42278223-42278242 | MS.gene25435:CDS | 35.0% |
| CAACAAGAGCTGAATTTCAG+TGG | + | chr8.3:42278517-42278536 | MS.gene25435:intron | 40.0% | |
| GAAGAAGAGAAGGCTTAACA+TGG | + | chr8.3:42278186-42278205 | MS.gene25435:CDS | 40.0% | |
| GAGGAAGAATTATCCGATGA+TGG | + | chr8.3:42278148-42278167 | MS.gene25435:CDS | 40.0% | |
| TAGGTGGAAGACAAAACAGT+TGG | + | chr8.3:42278339-42278358 | MS.gene25435:CDS | 40.0% | |
| TAGTCCAGATTGATCATCCA+TGG | - | chr8.3:42279390-42279409 | None:intergenic | 40.0% | |
| TGGATGATCAATCTGGACTA+TGG | + | chr8.3:42279390-42279409 | MS.gene25435:CDS | 40.0% | |
| ! | GAGTAACATGTTTTGTGCCA+TGG | + | chr8.3:42279370-42279389 | MS.gene25435:CDS | 40.0% |
| ! | TTGGTTTGAAAGAGCTGATG+AGG | - | chr8.3:42279293-42279312 | None:intergenic | 40.0% |
| AGAGGAAAATGCAGCTAGCA+AGG | + | chr8.3:42278263-42278282 | MS.gene25435:CDS | 45.0% | |
| AGTTAGGGGAGAAGAAGAGA+AGG | + | chr8.3:42278176-42278195 | MS.gene25435:CDS | 45.0% | |
| ATCAATCTGGACTATGGCCA+TGG | + | chr8.3:42279396-42279415 | MS.gene25435:CDS | 45.0% | |
| GAAACAAGCTTGAACCTGAG+AGG | + | chr8.3:42278245-42278264 | MS.gene25435:CDS | 45.0% | |
| GAGGAAAATGCAGCTAGCAA+GGG | + | chr8.3:42278264-42278283 | MS.gene25435:CDS | 45.0% | |
| GGTTTCAAAACAGAAGGGCT+AGG | + | chr8.3:42278320-42278339 | MS.gene25435:CDS | 45.0% | |
| TGGAGAAGAAGCTAATGTCG+AGG | + | chr8.3:42278129-42278148 | MS.gene25435:CDS | 45.0% | |
| TGTGCCATGGATGATCAATC+TGG | + | chr8.3:42279383-42279402 | MS.gene25435:CDS | 45.0% | |
| TTCAAAACAGAAGGGCTAGG+TGG | + | chr8.3:42278323-42278342 | MS.gene25435:CDS | 45.0% | |
| ATCTGGACTATGGCCATGGT+TGG | + | chr8.3:42279400-42279419 | MS.gene25435:CDS | 50.0% | |
| CCATCTTCTTCAAGACCAGC+AGG | + | chr8.3:42279263-42279282 | MS.gene25435:CDS | 50.0% | |
| CCCTAACTGCGATCCATCAT+CGG | - | chr8.3:42278164-42278183 | None:intergenic | 50.0% | |
| ! | AAGTGCTGTTGCTCCAACCA+TGG | - | chr8.3:42279416-42279435 | None:intergenic | 50.0% |
| ! | GCTAGCTGCATTTTCCTCTC+AGG | - | chr8.3:42278262-42278281 | None:intergenic | 50.0% |
| !! | CCGATGATGGATCGCAGTTA+GGG | + | chr8.3:42278161-42278180 | MS.gene25435:CDS | 50.0% |
| !! | CCTGCTGGTCTTGAAGAAGA+TGG | - | chr8.3:42279266-42279285 | None:intergenic | 50.0% |
| !! | CGATGATGGATCGCAGTTAG+GGG | + | chr8.3:42278162-42278181 | MS.gene25435:CDS | 50.0% |
| !! | TCCGATGATGGATCGCAGTT+AGG | + | chr8.3:42278160-42278179 | MS.gene25435:CDS | 50.0% |
| AGCTGATGAGGAACTCCTGC+TGG | - | chr8.3:42279281-42279300 | None:intergenic | 55.0% | |
| ATGCAGCTAGCAAGGGCTCT+TGG | + | chr8.3:42278271-42278290 | MS.gene25435:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 42278106 | 42279442 | 42278106 | ID=MS.gene25435 |
| chr8.3 | mRNA | 42278106 | 42279442 | 42278106 | ID=MS.gene25435.t1;Parent=MS.gene25435 |
| chr8.3 | exon | 42278106 | 42278453 | 42278106 | ID=MS.gene25435.t1.exon1;Parent=MS.gene25435.t1 |
| chr8.3 | CDS | 42278106 | 42278453 | 42278106 | ID=cds.MS.gene25435.t1;Parent=MS.gene25435.t1 |
| chr8.3 | exon | 42279089 | 42279442 | 42279089 | ID=MS.gene25435.t1.exon2;Parent=MS.gene25435.t1 |
| chr8.3 | CDS | 42279089 | 42279442 | 42279089 | ID=cds.MS.gene25435.t1;Parent=MS.gene25435.t1 |
| Gene Sequence |
| Protein sequence |
